Lysobacter soli

Bacteria
General | Carbohydrate O/F | Substrate utilisation | Enzymes | Metabolites | Antibiotics

Overview

  • Lysobacter soli is a Gram-negative, non-spore-forming, aerobic, gliding, rod-shaped bacterium. It has been detected in at least 2 gut microbiome compilation studies or metastudies. The DNA G+C content is 65.4%. Lysobacter soli is probably a rare gut coloniser. (Srinivasan2010)



  • This organism has been recovered from human faeces, and soil. Pathogenicity status unknown, or very unlikely to be pathogenic. A possible gut commensal.
    • GENERAL CHARACTERISTICS (Srinivasan2010);
    Character Response
  • Substrates hydrolysed or digested:
  • chitin;
  • pH
  • Acidity tolerance:
  • tolerates pH 5; tolerates pH 6.0-8.0; grows weakly at pH 11; Grows optimally at pH 7.0-7.5.
  • 🌡
  • Temperature tolerance:
  • grows at 4℃; grows at 42℃; Grows optimally at 30℃.
  • H+
  • Acid from carbohydrates usually produced:
  • L-arabinose; D-fucose; D-lyxose; L-arabitol;
  • ⥅
  • Substrates assimilated or utilised:
  • N-acetylglucosamine; glucose; maltose; mannose; proline; acetate; 3-hydroxybenzoate; 4-hydroxybenzoate;
  • Active enzymes:
  • alkaline phosphatase; acid phosphatase; N-Ac β-glucosaminidase; catalase; cystine arylamidase; esterase C4; esterase lipase C8; α-glucosidase; β-glucosidase; Leu arylamidase; lipase C14; oxidase; Val arylamidase; naphthol-ASBI-P;
    • SPECIAL FEATURES (Srinivasan2010);
    Character Response
  • ✗
  • Metabolites not produced:
  • indole;
  • ✓
  • NO3➔NO2:
  • reduced
  • Pigments:
  • yellow

  • Lagier, J.-C., Armougom, F., Million, M., Hugon, P., Pagnier, I., Robert, C., Bittar, F., Fournous, G., Gimenez, G., Maraninchi, M., Trape, J.-F., Koonin, E. V., La Scola, B., & Raoult, D. (2012). Microbial culturomics: paradigm shift in the human gut microbiome study. Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases, 18(12), 1185–1193.

    • Details

    GENERAL
    Lineage Physiology General Growth Tolerances Hydrol./digest./degr.
    Phylum:  Proteobacteria Class:  Gammaproteobacteria Order:  Lysobacterales Family:  Lysobacteraceae Genus:  Lysobacter Gram stain:  neg O2 Relation.:  aerobic Spore:  No spore Motility:  Gliding Morphology:  Rod Pigment:  yellow
    Health:  Unknown
    Source:  human faeces, and soil
    DNA G+C(%):  65.4
    Opt. T:  30℃
    Low T(℃):  4(+)
    High T(℃):  42(+)
    Opt. pH:  7.0-7.5
    pH 4.2-5.9:  5(+)
    pH 6.0-8.0:  6.0-8.0(+)
    pH >8:  11(w)
    		Chitin:  +
    CARBOHYDRATE ACID FORMATION
    Monosaccharide O/F Oligosaccharide O/F Polysaccharide O/F Polyol O/F Other O/F
    L-Arabinose:  + D-Fucose:  + D-Lyxose:  + Xylose:  neg Cellubiose:  neg Gentiobiose:  neg Maltose:  w Melibiose:  neg Sucrose:  neg Trehalose:  neg Turanose:  w Amygdalin:  neg L-Arabitol:  + Gluconate:  neg Me-α-D-Glc:  neg Salicin:  neg
    SUBSTRATE ASSIMILATION & UTILISATION
    Monosaccharide util/assim Oligosaccharide util/assim Other carboh. util/assim Amino acid util/assim Organic acid util/assim
    L-Arabinose:  neg Fucose:  neg Glucose:  + Mannose:  + Ribose:  neg Maltose:  + Melibiose:  neg Sucrose:  neg N_Acetyl_glucosamine:  + Gluconate:  neg Glycogen:  neg Inositol:  w Mannitol:  neg Salicin:  neg Sorbitol:  neg Ala:  neg His:  neg Pro:  + Ser:  neg Acetate:  + Adipate:  neg Caprate:  neg Citrate:  neg 3-Hydroxybutyrate:  neg 3-Hydroxybenzoate:  + 4-Hydroxybenzoate:  + Itaconate:  neg 2-Ketogluconate:  neg 5-Ketogluconate:  neg Lactate:  neg L-Malate:  neg Malonate:  neg Phenylacetate:  neg Propionate:  neg Suberate:  neg Valerate:  neg
    ENZYME ACTIVITY
    Enzymes: General Enzymes: Carbohydrate Enzymes: Protein Enzymes: Arylamidases Enzymes: Esters/fats
    Oxidase:  + Catalase:  + Ac-β-glcamnd:  + α-Fucosidase:  neg α-Galactosidase:  neg β-Galactosidase:  neg α-Glucosidase:  + β-Glucosidase:  + β-Glucuronidase:  neg α-Mannosidase:  neg Chymotrypsin:  neg Trypsin:  neg CystineAA:  + LeuAA:  + ValAA:  + AlkalineP:  + AcidP:  + Esterase(C4):  + EstLip(C8):  + Lipase(C14):  +
    METABOLITES - PRODUCTION & USE
    Fuel Usable Metabolites Metabolites Released Special Products Compounds Produced

    		Indole:  neg Pigment:  yellow

    References

    SPECIFIC REFERENCES FOR LYSOBACTER SOLI
  • Srinivasan2010 - Lysobacter soli sp. nov., isolated from soil of a ginseng field.
  • ...............................
    • GUT MICROBIOME COMPILATIONS AND METASTUDIES FOR LYSOBACTER SOLI
  • Lagier2016 - Culture of previously uncultured members of the human gut microbiota by culturomics.
  • RajilicStojanovic2014 - The first 1000 cultured species of the human gastrointestinal microbiota.
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    • Added: April 08, 2021