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Lagier, J.-C., Armougom, F., Million, M., Hugon, P., Pagnier, I., Robert, C., Bittar, F., Fournous, G., Gimenez, G., Maraninchi, M., Trape, J.-F., Koonin, E. V., La Scola, B., & Raoult, D. (2012). Microbial culturomics: paradigm shift in the human gut microbiome study. Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases, 18(12), 1185–1193.
Lineage | Physiology | General | Growth Tolerances | Hydrol./digest./degr. |
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Health: Unknown
Source: clinical sources (nasopharynx, eye, proctitis - CCUG) and human faeces.
DNA G+C(%): 49–51
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Opt. T: 35-37℃
Mid T(℃): 35-37(+)
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Monosaccharide O/F | Oligosaccharide O/F | Polysaccharide O/F | Polyol O/F | Other O/F |
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Enzymes: General | Enzymes: Carbohydrate | Enzymes: Protein | Enzymes: Arylamidases | Enzymes: Esters/fats |
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Fuel | Usable Metabolites | Metabolites Released | Special Products | Compounds Produced |
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Penicillins & Penems (μg/mL) | Cephalosporins (μg/mL) | Aminoglycosides (μg/mL) | Macrolides (μg/mL) | Quinolones (μg/mL) |
Augmentin: S(MIC50): 1, MIC90: 2, RNG: (0.5-2)
penicillin: S(MIC50): 2, MIC90: 4, RNG: (0.5-8)
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azithromycin: S(MIC50): 2, MIC90: 2, RNG: (0.5-4)
erythromycin: Var(MIC50): 4, MIC90: 8, RNG: (1-8)
clarithromycin: Var(MIC50): 4, MIC90: 4, RNG: (0.5-4)
roxithromycin: R(MIC50): 8, MIC90: 8, RNG: (2-8)
telithromycin: S(MIC50): 0.5, MIC90: 1, RNG: (0.015-1)
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ciprofloxacin: S(MIC50): 0.007, MIC90: 0.015, RNG: (<0.003-0.12)
gatifloxacin: S(MIC50): 0.008, MIC90: 0.06, RNG: (0.002–0.125)
levofloxacin: S(MIC50): 0.015, MIC90: 0.03, RNG: (0.007-0.12)
moxifloxacin: S(MIC50): 0.064, MIC90: 1, RNG: (0.016-1)
ofloxacin: S(MIC50): 0.03, MIC90: 0.06, RNG: (0.015-0.25)
sparfloxacin: S(MIC50): 0.007, MIC90: 0.015, RNG: (0.007-0.015)
trovafloxacin: S(MIC50): 0.008, MIC90: 0.06, RNG: (0.002–0.06)
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Tetracyclines (μg/mL) | Vancomycin Class (μg/mL) | Polypep/ketides (μg/mL) | Heterocycles (μg/mL) | Other (μg/mL) |
doxycycline: Var(MIC50): 2, MIC90: >256, RNG: (0.5->256)
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clindamycin: R(MIC50): 128, MIC90: >256, RNG: (16->256)
colistin: Var
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