Pseudomonas oryzihabitans

Bacteria
General | Carbohydrate O/F | Substrate utilisation | Enzymes | Metabolites | Antibiotics

Overview

  • Pseudomonas oryzihabitans is a Gram-negative, non-spore-forming, aerobic, motile, rod-shaped bacterium. It has been detected in at least 1 gut microbiome compilation study or metastudy. The DNA G+C content is 65.1%. Pseudomonas oryzihabitans is likely to be transient and not a long-term gut coloniser. (Kodama1985; Palleroni2005bBergey)



  • This organism has been recovered from human faeces (18-yr-old - CCUG), clinical sources (blood, urine, wound - CCUG) and rice paddies. The risk classification (www.baua.de) for this organism is 2, i.e., risk of individual infection, but low risk of spread. It is an opportunistic pathogen. Likely to be transient and not a long-term gut commensal.
    • GENERAL CHARACTERISTICS (Kodama1985); (Palleroni2005bBergey);
    Character Response
  • Substrates hydrolysed or digested:
  • casein; urea;
  • 🧂
  • Salt tolerance:
  • tolerates 6.5% salt;
  • 🌡
  • Temperature tolerance:
  • grows at 42℃;
  • H+
  • Acid from carbohydrates usually produced:
  • L-arabinose; fructose; galactose; glucose; mannose; xylose; maltose; trehalose; inositol; mannitol; sorbitol;
  • ⥅
  • Substrates assimilated or utilised:
  • arabinose; L-arabinose; d_arabitol; ethanol; fructose; fucose; galactose; gluconate; glucose; glycerol; inositol; maltose; mannitol; mannose; melibiose; propanol; rhamnose; ribose; sorbitol; trehalose; xylose; β-alanine; betaine; glutamate; isoleucine; leucine; serine; valine; acetate; caprate; citraconate; citrate; fumarate; glycerate; 3-hydroxybutyrate; 4-hydroxybenzoate; itaconate; 2-ketogluconate; 5-ketogluconate; malonate; mucate; propionate; pyruvate; succinate; L-tartrate; meso-tartrate; glutamine; inosine; D-malate; L-lactate;
  • Active enzymes:
  • catalase; urease;
    • SPECIAL FEATURES (Kodama1985); (Palleroni2005bBergey);
    Character Response
  • ✗
  • Metabolites not produced:
  • H₂S; indole;
  • ✗
  • ONPG test:
  • not active
  • ✓
  • NO3➔NO2:
  • reduced
  • Pigments:
  • yellow
    • RESPONSE TO ANTIBIOTICS
    Class Active Resistant
  • Penicillins:
  • imipenem;
  • Cephalosporins:
  • ceftazidime;

    • Details

    GENERAL
    Lineage Physiology General Growth Tolerances Hydrol./digest./degr.
    Phylum:  Proteobacteria Class:  Gammaproteobacteria Order:  Pseudomonadales Family:  Pseudomonadaceae Genus:  Pseudomonas Gram stain:  neg O2 Relation.:  aerobic Spore:  No spore Motility:  Swimming Morphology:  Rod Pigment:  yellow
    Health:  Unknown
    Source:  human faeces (18-yr-old - CCUG), clinical sources (blood, urine, wound - CCUG) and rice paddies
    DNA G+C(%):  65.1
    High T(℃):  42(+)
    NaCl >6%:  6.5(+)
    		Aesculin:  neg Urea:  + Gelatin:  neg Starch:  neg Casein:  + Agar:  neg Tween:  80(+)
    CARBOHYDRATE ACID FORMATION
    Monosaccharide O/F Oligosaccharide O/F Polysaccharide O/F Polyol O/F Other O/F
    L-Arabinose:  + Fructose:  + Galactose:  + Glucose:  + Mannose:  + Rhamnose:  neg Xylose:  + Cellubiose:  neg Lactose:  neg Maltose:  + Sucrose:  neg Trehalose:  + Inulin:  neg Adonitol:  neg Inositol:  + Mannitol:  + Sorbitol:  + Salicin:  neg
    SUBSTRATE ASSIMILATION & UTILISATION
    Monosaccharide util/assim Oligosaccharide util/assim Other carboh. util/assim Amino acid util/assim Organic acid util/assim
    Arabinose:  + L-Arabinose:  + Fructose:  + Fucose:  + Galactose:  + Glucose:  + Mannose:  + Rhamnose:  + Ribose:  + Xylose:  + Cellubiose:  neg Lactose:  neg Maltose:  + Melibiose:  + Raffinose:  neg Sucrose:  neg Trehalose:  + Adonitol:  neg D-Arabitol:  + L-Arabitol:  neg Erythritol:  neg Ethanol:  + Gluconate:  + Glucosamine:  neg Glycerol:  + Inositol:  + Inulin:  neg Mannitol:  + Propanol:  + Salicin:  neg Sorbitol:  + Starch:  neg Xylitol:  neg β-Ala:  + Betaine:  + L-Citrulline:  neg Glu:  + Gly:  neg Hippurate:  neg His:  neg Ile:  + Leu:  + Lys:  neg Orn:  neg Phe:  neg Ser:  + Thr:  neg Tryptamine:  neg Trp:  neg Tyr:  neg Val:  + Acetate:  + Adipate:  neg Azelate:  neg Benzoate:  neg Butyrate:  neg Caprate:  + Citraconate:  + Citrate:  + Fumarate:  + Glycerate:  + Glycolate:  neg 3-Hydroxybutyrate:  + 3-Hydroxybenzoate:  neg 4-Hydroxybenzoate:  + Isobutyrate:  neg Isovalerate:  neg Itaconate:  + 2-Ketogluconate:  + 5-Ketogluconate:  + Levulinate:  neg Malonate:  + L-Mandelate:  neg Mucate:  + Phenol:  neg Phenylacetate:  neg Propionate:  + Pyruvate:  + Sebacate:  neg Succinate:  + D-Tartrate:  neg L-Tartrate:  + Valerate:  neg
    ENZYME ACTIVITY
    Enzymes: General Enzymes: Carbohydrate Enzymes: Protein Enzymes: Arylamidases Enzymes: Esters/fats
    Oxidase:  neg Catalase:  + Urease:  + ArgDH:  neg LysDC:  neg OrnDC:  neg Phe deaminase:  neg AlkalineP:  neg AcidP:  neg Lipase:  neg
    METABOLITES - PRODUCTION & USE
    Fuel Usable Metabolites Metabolites Released Special Products Compounds Produced

    		H2S:  neg Indole:  neg Pigment:  yellow
    ANTIBIOTICS ℞
    Penicillins & Penems (μg/mL) Cephalosporins (μg/mL) Aminoglycosides (μg/mL) Macrolides (μg/mL) Quinolones (μg/mL)
    Augmentin:  Var(MIC50): 2, MIC90: -
    tica-clav:  Var(MIC50): 2, MIC90: 64, RNG: (0.13->64)
    imipenem:  S(MIC50): 0.13, MIC90: 0.25, RNG: (0.13-2)
    cefepime:  Var(MIC50): 0.13, MIC90: 8, RNG: (≤0.06->64)
    cefotetan:  Var(MIC50): 2, MIC90: 32, RNG: (0.5->64)
    ceftazidime:  S(MIC50): 0.5, MIC90: 2, RNG: (0.13->64)
    ciprofloxacin:  Var(MIC50): ≤0.06, MIC90: 0.5, RNG: (≤0.06-0.5)
    Tetracyclines (μg/mL) Vancomycin Class (μg/mL) Polypep/ketides (μg/mL) Heterocycles (μg/mL) Other (μg/mL)

    References

    SPECIFIC REFERENCES FOR PSEUDOMONAS ORYZIHABITANS
  • Kodama1985 - Two New Species of Pseudomonas: P. oryzihabitans Isolated from Rice Paddy and Clinical Specimens and P. luteola Isolated from Clinical Specimens.
  • Palleroni2005bBergey - Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Pseudomonadaceae, Genus I. Pseudomonas
  • ...............................
    • GUT MICROBIOME COMPILATIONS AND METASTUDIES FOR PSEUDOMONAS ORYZIHABITANS
  • Lagier2016 - Culture of previously uncultured members of the human gut microbiota by culturomics.
  • ...............................
    • GENERAL REFERENCES FOR PSEUDOMONAS ORYZIHABITANS
  • CCUG - Culture Collection University of Gothenburg - Entire Collection
    • Added: July 12, 2021