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| Citation | Keywords | Bacteria | Year | Authors | Title | Journal | Vol(Issue) pages | DOI/PMID |
|---|---|---|---|---|---|---|---|---|
| Abbrescia2015 | antibiotic, antimicrobial | Bacillus clausii | 2015 |
Abbrescia, A.; Palese, L. L.; Papa, S.; Gaballo, A.; Alifano, P.; Sardanelli, Anna |
Antibiotic Sensitivity of Bacillus clausii Strains in Commercial Preparation. | Clinical Immunology, Endocrine and Metabolic Drugs | 1(2), page(s): 102—110 | 10.2174/2212707002666150128195631 |
| Abraham1999 | summary, taxonomy | Maricaulis maris, Brevundimonas aurantiaca, Brevundimonas intermedia, Brevundimonas bacteroides | 1999 |
Abraham, Wolf-Rainer; Strömpl, Carsten; Meyer, Holger; Lindholst, Sabine; Moore, Edward R. B.; Christ, Ruprecht; Vancanneyt, Marc; Tindall, B. J.; Bennasar, Antonio; Smit, John; Tesar, Michael |
Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. | International Journal of Systematic and Evolutionary Microbiology | 49(3), page(s): 1053—1073 | 10.1099/00207713-49-3-1053 |
| Goldstein2003 | antibiotic, antimicrobial, clinical sources | Actinomyces israelii, Actinomyces naeslundii, Actinomyces viscosus, Anaerococcus prevotii, Anoxystipes contortum, Bifidobacterium adolescentis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium longum, Campylobacter concisus, Campylobacter gracilis, Campylobacter rectus, Campylobacter showae,Clostridium baratii, Clostridium butyricum, Clostridium cochlearium, Clostridium leptum, Clostridium novyi A, Clostridium paraputrificum, Clostridium sporogenes, Clostridium subterminale, Clostridium symbiosum, Clostridium tertium, Collinsella aerofaciens, Corynebacterium afermentans, Corynebacterium amycolatum, Corynebacterium minutissimum, Corynebacterium striatum, Corynebacterium xerosis, Cutibacterium acnes, Cutibacterium avidum, Cutibacterium granulosum, Eubacterium brachy, Eubacterium limosum, Finegoldia magna, Gemella morbillorum, Lacrimispora sphenoides, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus jensenii, Levilactobacillus brevis, Limosilactobacillus fermentum, Paeniclostridium sordellii, Paraclostridium bifermentans, Parvimonas micra, Peptostreptococcus anaerobius, Ureaplasma urealyticum | 2003 |
Goldstein, Ellie J. C.; Citron, Diane M.; Merriam, C. Vreni; Warren, Yumi A.; Tyrrell, Kerrin L.; Fernandez, Helen T |
In Vitro Activities of Daptomycin, Vancomycin, Quinupristin- Dalfopristin, Linezolid, and Five Other Antimicrobials against 307 Gram-Positive Anaerobic and 31 Corynebacterium Clinical Isolates. | Antimicrobial Agents and Chemotherapy | 47(1), page(s): 337—341 | 10.1128/aac.47.1.337-341.2003 |
| Farmer1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Atlantibacter hermannii, Cedecea davisae, Citrobacter amalonaticus, Citrobacter freundii, Cronobacter sakazakii, Edwardsiella tarda, Enterobacter cloacae, Escherichia coli, Escherichia fergusonii, Ewingella americana, Hafnia alvei, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Kluyvera ascorbata, Moellerella wisconsensis, Morganella morganii, Pantoea agglomerans, Pluralibacter gergoviae, Proteus mirabilis, Proteus penneri, Proteus vulgaris, Providencia alcalifaciens, Providencia rettgeri, Providencia rustigianii, Providencia stuartii, Escherichia vulneris, Raoultella planticola, Raoultella terrigena, Serratia ficaria, Serratia fonticola, Serratia liquefaciens, Serratia marcescens, Serratia odorifera, Shigella sonnei, Yersinia enterocolitica subsp. enterocolitica, Yersinia frederiksenii, Yersinia kristensenii subsp. rochesterensis, Yersinia pseudotuberculosis | 1985 |
Farmer, J. J.; Davis, B. R.; Hickman-Brenner, F. W.; McWhorter, A.; Huntley-Carter, G. P.; Asbury, M. A.; Riddle, C.; Wathen-Grady, H. G.; Elias, C.; Fanning, G. R. |
Biochemical identification of new species and biogroups of Enterobacteriaceae isolated from clinical specimens. | Journal of Clinical Microbiology | 21, page(s): 46—76 | 10.1128/jcm.21.1.46-76.1985 |
| Zheng2020 | taxonomy | Loigolactobacillus coryniformis subsp. torquens, Paucilactobacillus vaccinostercus, Paucilactobacillus oligofermentans, Companilactobacillus alimentarius, Companilactobacillus mindensis, Fructilactobacillus sanfranciscensis, Lapidilactobacillus dextrinicus, Ligilactobacillus murinus, Lentilactobacillus hilgardii, Lactiplantibacillus xiangfangensis, Lacticaseibacillus casei, Lacticaseibacillus paracasei, Lacticaseibacillus rhamnosus, Lacticaseibacillus saniviri, Lacticaseibacillus sharpeae, Lactiplantibacillus paraplantarum, Lactiplantibacillus pentosus, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus amylovorus, Lactobacillus crispatus, Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus gasseri, Lactobacillus hamsteri, Lactobacillus helveticus, Lactobacillus iners, Lactobacillus jensenii, Lactobacillus johnsonii, Lactobacillus kalixensis, Lactobacillus kefiranofaciens subsp. kefirgranum, Lactobacillus ultunensis, Latilactobacillus curvatus, Latilactobacillus sakei, Lentilactobacillus parabuchneri, Lentilactobacillus parakefiri, Lentilactobacillus senioris, Levilactobacillus brevis, Ligilactobacillus agilis, Ligilactobacillus animalis, Ligilactobacillus aviarius, Ligilactobacillus ruminis, Ligilactobacillus saerimneri, Limosilactobacillus antri, Limosilactobacillus coleohominis, Limosilactobacillus fermentum, Limosilactobacillus gastricus, Limosilactobacillus mucosae, Limosilactobacillus oris, Limosilactobacillus reuteri, Limosilactobacillus vaginalis, Loigolactobacillus coryniformis, Paucilactobacillus vaccinostercus, Schleiferilactobacillus harbinensis, Schleiferilactobacillus perolens, Latilactobacillus sakei subsp. carnosus | 2020 |
Zheng, Jinshui; Wittouck, Stijn; Salvetti, Elisa; Franz, Charles M. A. P.; Harris, Hugh M. B.; Mattarelli, Paola; O'Toole, Paul W.; Pot, Bruno; Vandamme, Peter; Walter, Jens; Watanabe, Koichi; Wuyts, Sander; Felis, Giovanna E.; Gänzle, Michael G.; Lebeer, Sarah |
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae. | International Journal of Systematic and Evolutionary Microbiology | 70(4), page(s): 2782—2858 | 10.1099/ijsem.0.004107 |
| Abraham2008 | summary, general characteristics, enzymes, metabolites, utilisation | Caulobacter mirabilis, Phenylobacterium haematophilum, Phenylobacterium conjunctum, Brevundimonas bacteroides | 2008 |
Abraham, W.-R.; Macedo, A. J.; Lunsdorf, H.; Fischer, R.; Pawelczyk, S.; Smit, J.; Vancanneyt, M. |
Phylogeny by a polyphasic approach of the order Caulobacterales, proposal of Caulobacter mirabilis sp. nov., Phenylobacterium haematophilum sp. nov. and Phenylobacterium conjunctum sp. nov., and emendation of the genus Phenylobacterium. | International Journal of Systematic and Evolutionary Microbiology | 58(8), page(s): 1939—1949 | 10.1099/ijs.0.65567-0 |
| Adimpong2012 | antibiotic, antimicrobial, fermented foods | Bacillus licheniformis, Bacillus subtilis subsp. subtilis, Bacillus sonorensis | 2012 |
Adimpong D.B., Sørensen K.I., Thorsen L., Stuer-Lauridsen B., Abdelgadir W.S., Nielsen D.S., Derkx P.M., Jespersen L. |
Antimicrobial Susceptibility of Bacillus Strains Isolated from Primary Starters for African Traditional Bread Production and Characterization of the Bacitracin Operon and Bacitracin Biosynthesis. | Applied and Environmental Microbiology | 78(22), page(s): 7903—7914 | 10.1128/aem.00730-12 |
| Afouda2017 | summary, general characteristics | Lactobacillus timonensis | 2017 |
Afouda, P.; Fournier, P. E.; Raoult, D.; Merhej, V. |
'Lactobacillus timonensis' sp. nov., a new bacterial species isolated from the human gut. | New Microbes and New Infections | 19, page(s): 121—122 | 10.1016/j.nmni.2017.07.001 |
| Afouda2017a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, health, Clostridioides difficile infection | Prevotella phocaeensis | 2017 |
Afouda, P.; Ndongo, S.; Khelaifia, S.; Labas, N.; Cadoret, F.; Pinto, F. Di; Delerce, J.; Raoult, D.; Million, M. |
Non-contiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile. | New Microbes and New Infections | 15, page(s): 117—127 | 10.1016/j.nmni.2016.12.013 |
| Afouda2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Intestinimonas massiliensis | 2018 |
Afouda, Pamela; Durand, Guillaume A.; Lagier, Jean-Christophe; Labas, Noémie; Cadoret, Fréderic; Armstrong, Nicholas; Raoult, Didier; Dubourg, Grégory |
Non-contiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2T, the second Intestinimonas species cultured from the human gut. | MicrobiologyOpen | 8(1), page(s): e00621 | 10.1002/mbo3.621 |
| Afouda2018a | summary, general characteristics | Massiliimalia timonensis | 2018 |
Afouda, P.; Dubourg, G.; Cadoret, F.; Fournier, P. E.; Raoult, D. |
'Massilimalia timonensis' sp. nov., a new bacterium species isolated from human faeces after decontamination with alcohol. | New Microbes and New Infections | 21, page(s): 86—87 | 10.1016/j.nmni.2017.10.011 |
| Agersoe2018 | antibiotic, antimicrobial | Bacillus megaterium, Bacillus amyloliquefaciens, Bacillus velezensis, Bacillus paralicheniformis, Bacillus licheniformis | 2018 |
Agersø, Yvonne; Stuer-Lauridsen, Birgitte; Bjerre, Karin; Jensen, Michelle Geervliet; Johansen, Eric; Bennedsen, Mads; Brockmann, Elke; Nielsen, Bea |
Antimicrobial Susceptibility Testing and Tentative Epidemiological Cutoff Values for Five Bacillus Species Relevant for Use as Animal Feed Additives or for Plant Protection. | Applied and Environmental Microbiology | 84(19), | 10.1128/aem.01108-18 |
| Agrawal2019 | disease, health | Abiotrophia defectiva | 2019 |
Agrawal, Upasana; Prabhu, M. Mukhyaprana |
Abiotrophia defectiva: A Rare but Critical Cause of Infective Endocarditis. | Cureus | 11(12), page(s): e6492 | 10.7759/cureus.6492 |
| Ah2007 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Bifidobacterium thermophilum | 2007 |
von Ah, Ueli; Mozzetti, Valeria; Lacroix, Christophe; Kheadr, Ehab E.; Fliss, Ismaïl; Meile, Leo |
Classification of a moderately oxygen-tolerant isolate from baby faeces as Bifidobacterium thermophilum. | BMC Microbiology | 7(1), | 10.1186/1471-2180-7-79 |
| Ahmed2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Lysinibacillus boronitolerans, Lysinibacillus fusiformis, Lysinibacillus sphaericus | 2007 |
Ahmed, Iftikhar; Yokota, Akira; Yamazoe, Atsushi; Fujiwara, Toru |
Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 57(5), page(s): 1117—1125 | 10.1099/ijs.0.63867-0 |
| Ahn2016 | summary, general characteristics, utilisation, acid from carbohydrates, metabolites, butyrate | Agathobaculum butyriciproducens, Agathobaculum desmolans | 2016 |
Ahn, Sharon; Jin, Tae-Eun; Chang, Dong-Ho; Rhee, Moon-Soo; Kim, Hyun Ju; Lee, Sang Jun; Park, Doo-Sang; Kim, Byoung-Chan |
Agathobaculum butyriciproducens gen. nov., sp. nov., a strict anaerobic, butyrate-producing gut bacterium isolated from human faeces and reclassification of Eubacterium desmolans as Agathobaculum desmolans comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(9), page(s): 3656—3661 | 10.1099/ijsem.0.001195 |
| Aken2004 | summary, general characteristics, enzymes, metabolites, utilisation | Methylobacterium populi | 2004 |
Aken, Benoit Van; Peres, Caroline M.; Doty, Sharon Lafferty; Yoon, Jong Moon; Schnoor, Jerald L. |
Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides\texttimesnigra DN34). | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1191—1196 | 10.1099/ijs.0.02796-0 |
| Alauzet2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Prevotella nanceiensis | 2007 |
Alauzet, C.; Mory, F.; Carlier, J.-P.; Marchandin, H.; Jumas-Bilak, E.; Lozniewski, A. |
Prevotella nanceiensis sp. nov., isolated from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 57(10), page(s): 2216—2220 | 10.1099/ijs.0.65173-0 |
| Alberti2016 | antibiotic, antimicrobial | Abiotrophia defectiva, Granulicatella adiacens, Granulicatella elegans | 2016 |
Alberti, Michael O.; Hindler, Janet A.; Humphries, Romney M. |
Antimicrobial Susceptibilities of Abiotrophia defectiva, Granulicatella adiacens, and Granulicatella elegans. | Antimicrobial Agents and Chemotherapy | 60(3), page(s): 1411—1420 | 10.1128/aac.02645-15 |
| Aldova1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Pragia fontium | 1988 |
Aldova, E.; Hausner, O.; Brenner, D. J.; Kocmoud, Z.; Schindler, J.; Potuznikova, B.; Petras, P. |
Pragia fontium gen. nov., sp. nov. of the Family Enterobacteriaceae, Isolated from Water. | International Journal of Systematic Bacteriology | 38(2), page(s): 183—189 | 10.1099/00207713-38-2-183 |
| Alexander1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus glucanolyticus | 1989 |
Alexander, B.; Priest, F. G. |
Bacillus glucanolyticus, a New Species That Degrades a Variety of beta-Glucans. | International Journal of Systematic Bacteriology | 39(2), page(s): 112—115 | 10.1099/00207713-39-2-112 |
| Ali1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Aeromonas bestiarum | 1996 |
Ali, A.; Carnahan, A. M.; Altwegg, M.; Luthy-Hottenstein, J.; Joseph, S. W. |
Aeromonas bestiarum sp. nov. (formerly genomospecies DNA group 2A Hydrophila), a new species isolated from non-human sources. | Med. Microbiol. Lett | 5, page(s): 156 | |
| Allen1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, water source | Aeromonas media | 1983 |
Allen, D. A.; Austin, B.; Colwell, R. R. |
Aeromonas media, a New Species Isolated from River Water. | International Journal of Systematic Bacteriology | 33(3), page(s): 599—604 | 10.1099/00207713-33-3-599 |
| Allen2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, water source | Cloacibacterium normanense | 2006 |
Allen, Toby D.; Lawson, Paul A.; Collins, Matthew D.; Falsen, Enevold; Tanner, Ralph S. |
Cloacibacterium normanense gen. nov., sp. nov., a novel bacterium in the family Flavobacteriaceae isolated from municipal wastewater. | International Journal of Systematic and Evolutionary Microbiology | 56(6), page(s): 1311—1316 | 10.1099/ijs.0.64218-0 |
| AllenVercoe2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Anaerostipes hadrus | 2012 |
Allen-Vercoe, Emma; Daigneault, Michelle; White, Aaron; Panaccione, Remo; Duncan, Sylvia H.; Flint, Harry J.; O'Neal, Lindsey; Lawson, Paul A. |
Anaerostipes hadrus comb. nov., a dominant species within the human colonic microbiota: reclassification of Eubacterium hadrum Moore et al. 1976. | Anaerobe | 18(5), page(s): 523—529 | 10.1016/j.anaerobe.2012.09.002 |
| Allison1985 | summary, general characteristics, enzymes, metabolites, utilisation | Oxalobacter formigenes | 1985 |
Allison, Milton J.; Dawson, Karl A.; Mayberry, William R.; Foss, John G. |
Oxalobacter formigenes gen. nov., sp. nov.: oxalate-degrading anaerobes that inhabit the gastrointestinal tract. | Archives of Microbiology | 141(1), page(s): 1—7 | 10.1007/bf00446731 |
| AlmaguerFlores2006 | antibiotics, oral cavity | Actinomyces israelii, Actinomyces naeslundii, Actinomyces viscosus, Campylobacter gracilis, Campylobacter rectus, Campylobacter showae, Capnocytophaga ochracea, Capnocytophaga sputigena, Eikenella corrodens, Eubacterium sulci, Fusobacterium nucleatum, Fusobacterium periodonticum, Gemella morbillorum, Leptotrichia buccalis, Neisseria mucosa, Parvimonas micra, Peptostreptococcus micros, Porphyromonas endodontalis, Porphyromonas gingivalis, Prevotella intermedia, Prevotella melaninogenica, Prevotella nigrescens, Cutibacterium acnes, Streptococcus anginosus, Streptococcus constellatus subsp. constellatus, Streptococcus gordonii, Streptococcus intermedius, Streptococcus mitis, Streptococcus oralis, Streptococcus sanguinis, Tannerella forsythia, Veillonella parvula | 2006 |
Almaguer-Flores, Argelia; Moreno-Borjas, Jazmin-Yunuen; Salgado-Martinez, Araceli; Sanchez-Reyes, Marco-Antonio; Alcantara-Maruri, Eulalio; Ximenez-Fyvie, Laurie-Ann |
Proportion of antibiotic resistance in subgingival plaque samples from Mexican subjects. | Journal of Clinical Periodontology | 33(10), page(s): 743—748 | 10.1111/j.1600-051x.2006.00975.x |
| Alnajar2017 | taxonomy | Pseudescherichia vulneris | 2017 |
Alnajar, Seema; Gupta, Radhey S. |
Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family. | Infection, Genetics and Evolution | 54, page(s): 108—127 | 10.1016/j.meegid.2017.06.024 |
| Alou2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus rubiinfantis | 2015 |
Alou, M. Tidjiani; Rathored, J.; Khelaifia, S.; Michelle, C.; Brah, S.; Diallo, B. A.; Raoult, D.; Lagier, J.-C. |
Bacillus rubiinfantis sp. nov. strain mt2(T), a new bacterial species isolated from human gut. | New Microbes and New Infections | 8, page(s): 51—60 | 10.1016/j.nmni.2015.09.008 |
| Alou2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, malnutrition | Anaerococcus rubiinfantis, Anaerococcus rubeinfantis | 2016 |
Alou, Maryam Tidjani; Khelaifia, Saber; Michelle, Caroline; Andrieu, Claudia; Armstrong, Nicholas; Bittar, Fadi; Sokhna, Cheikh; Diallo, Aldiouma; Fournier, Pierre-Edouard; Raoult, Didier; Million, Matthieu |
Anaerococcus rubiinfantis sp. nov., isolated from the gut microbiota of a Senegalese infant with severe acute malnutrition. | Anaerobe | 40, page(s): 85—94 | 10.1016/j.anaerobe.2016.06.007 |
| Alou2016a | summary, general characteristics | Clostridium massiliodielmoense | 2016 |
Alou, Maryam Tidjani; Sokhna, Cheikh; Bittar, Fadi; Khelaifia, Saber; Fournier, Pierre-Edouard; Raoult, Didier |
'Clostridium massiliodielmoense', a new species isolated from the human gut microbiota. | New Microbes and New Infections | 13, page(s): 27—28 | 10.1016/j.nmni.2016.05.014 |
| Alou2016b | summary | Lachnoclostridium massiliosenegalense | 2016 |
Alou, M. Tidjani; Lagier, J.-C.; Scola, B. La; Cassir, N. |
'Lachnoclostridium massiliosenegalense', a new bacterial species isolated from the human gut microbiota. | New Microbes and New Infections | 14, page(s): 4—5 | 10.1016/j.nmni.2016.07.014 |
| Alou2016c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Massilibacterium senegalense | 2016 |
Alou, M. Tidjani; Rathored, J.; Lagier, J.-C.; Khelaifia, S.; Labas, N.; Sokhna, C.; Diallo, A.; Raoult, D.; Dubourg, G. |
Massilibacterium senegalense gen. nov., sp. nov., a new bacterial genus isolated from the human gut. | New Microbes and New Infections | 10, page(s): 101—111 | 10.1016/j.nmni.2016.01.010 |
| Alou2016d | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Numidum massiliense | 2016 |
Alou, M. Tidjani; Nguyen, T.-T.; Armstrong, N.; Rathored, J.; Khelaifia, S.; Raoult, D.; Fournier, P.-E.; Lagier, J.-C. |
Numidum massiliense gen. nov., sp. nov., a new member of the Bacillaceae family isolated from the human gut. | New Microbes and New Infections | 12, page(s): 76—85 | 10.1016/j.nmni.2016.05.009 |
| Alou2017 | summary, general characteristics | Khelaifiella massiliensis, Niameybacter massiliensis, Brachybacterium massiliense, Enterobacter timonensis, Massilibacillus massiliensis | 2017 |
Alou, M. Tidjani; Cadoret, F.; Brah, S.; Diallo, A.; Sokhna, C.; Mehrej, V.; Lagier, J.-C.; Fournier, P.-E.; Raoult, D. |
'Khelaifiella massiliensis', 'Niameybacter massiliensis', 'Brachybacterium massiliense', 'Enterobacter timonensis', 'Massilibacillus massiliensis', new bacterial species and genera isolated from the gut microbiota of healthy infants. | New Microbes and New Infections | 19, page(s): 1—7 | 10.1016/j.nmni.2017.02.002 |
| Alou2017a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, malnutrition | Inediibacterium massiliense | 2017 |
Alou, Maryam Tidjani; Rathored, Jaishriram; Michelle, Caroline; Dubourg, Gregory; Andrieu, Claudia; Armstrong, Nicholas; Sokhna, Cheikh; Diallo, Aldiouma; Raoult, Didier; Fournier, Pierre-Edouard |
Inediibacterium massiliense gen. nov., sp. nov., a new bacterial species isolated from the gut microbiota of a severely malnourished infant. | Antonie van Leeuwenhoek | 110(6), page(s): 737—750 | 10.1007/s10482-017-0843-5 |
| Alou2018 | summary, general characteristics, enzymes, acid from carbohydrates | Clostridium amazonitimonense, Clostridium merdae, Clostridium massiliodielmoense, Clostridium nigeriense | 2018 |
Alou, M. T.; Ndongo, S.; Frégere, L.; Labas, N.; Andrieu, C.; Richez, M.; Couderc, C.; Baudoin, J.-P.; Abrahao, J.; Brah, S.; Diallo, A.; Sokhna, C.; Cassir, N.; Scola, B. La; Cadoret, F.; Raoult, D. |
Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense' , 'Clostridium merdae' , 'Clostridium massilidielmoense' and 'Clostridium nigeriense'. | New Microbes and New Infections | 21, page(s): 128—139 | 10.1016/j.nmni.2017.11.003 |
| Altenburger2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Georgenia muralis | 2002 |
Altenburger, Petra; Peter Kampfer, Peter Schumann, Dietmar Vybiral, Werner Lubitz and Hans-Jurgen Busse |
Georgenia muralis gen. nov., sp. nov., a novel actinobacterium isolated from a medieval wall painting. | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 875—881 | 10.1099/ijs.0.01984-0 |
| Amadou2016 | summary | Lachnoclostridium bouchesdurhonense | 2016 |
Amadou, T.; Hosny, M.; Scola, B. La; Cassir, N. |
Lachnoclostridium bouchesdurhonense,' a new bacterial species isolated from human gut microbiota. | New Microbes and New Infections | 13, page(s): 69—70 | 10.1016/j.nmni.2016.06.015 |
| Amir2014 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, blood infection | Eisenbergiella tayi | 2014 |
Amir, Itay; Bouvet, Philippe; Legeay, Christine; Gophna, Uri; Weinberger, Abraham |
Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/3), page(s): 907—914 | 10.1099/ijs.0.057331-0 |
| An2009 | summary, general characteristics, enzymes, metabolites, utilisation | Rhodanobacter ginsenosidimutans | 2009 |
An, D.-S.; Lee, H.-G.; Lee, S.-T.; Im, W.-T. |
Rhodanobacter ginsenosidimutans sp. nov., isolated from soil of a ginseng field in South Korea. | International Journal of Systematic and Evolutionary Microbiology | 59(4), page(s): 691—694 | 10.1099/ijs.0.001784-0 |
| Anani2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Colibacter massiliensis | 2019 |
Anani, Hussein; Abdallah, Rita Abou; Khoder, May; Fontanini, Anthony; Mailhe, Morgane; Ricaboni, Davide; Raoult, Didier; Fournier, Pierre-Edouard |
Colibacter massiliensis gen. nov. sp. nov., a novel Gram-stain-positive anaerobic diplococcal bacterium, isolated from the human left colon. | Scientific Reports | 9(1), page(s): 17199 | 10.1038/s41598-019-53791-1 |
| Andersson1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus thermosphaericus | 1995 |
Andersson, M.; Laukkanen, M.; Nurmiaho-Lassila, E.-L.; Rainey, F. A.; Niemelä, S. I.; Salkinoja-Salonen, M. |
Bacillus thermosphaericus sp. nov. a New Thermophilic Ureolytic. | Systematic and Applied Microbiology | 18(2), page(s): 203—220 | 10.1016/s0723-2020(11)80391-7 |
| Andino2015 | health, salmonella | Salmonella enterica | 2015 |
Andino, A.; Hanning, I. |
Salmonella enterica: Survival, Colonization, and Virulence Differences among Serovars. | The Scientific World Journal | 2015, page(s): 1—16 | 10.1155/2015/520179 |
| Andrews2002 | antibiotic, antimicrobial | Bacillus cereus, Bacillus subtilis | 2002 |
Andrews, J. M. |
Susceptibility testing of Bacillus species. | Journal of Antimicrobial Chemotherapy | 49(6), page(s): 1040—1042 | 10.1093/jac/dkf063 |
| Andriani2017 | image | Priestia megaterium, Bacillus mycoides | 2017 |
Andriani, Yuli; Rochima, Emma; Safitri, Ratu; Rahayuningsih, Sri Rejeki |
Characterization of Bacillus megaterium and Bacillus mycoides Bacteria as Probiotic Bacteria in Fish and Shrimp Feed. | KnE Life Sciences | 2(6), page(s): 127 | 10.18502/kls.v2i6.1029 |
| Andrieu2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides mediterraneensis, Bacteroides ihuae, Bacteroides togonis, Bacteroides ndongoniae, Bacteroides ilei, Bacteroides congonensis | 2018 |
Andrieu, C.; Mailhe, M.; Ricaboni, D.; Fonkou, M. D. M.; Bilen, M.; Cadoret, F.; Tomei, E.; Armstrong, N.; Vitton, V.; Benezech, A.; Davoust, B.; Levasseur, A.; Lagier, J.-C.; Fournier, P.-E.; Raoult, D. |
Non-contiguous finished genome sequences and description of Bacteroides mediterraneensis sp. nov., Bacteroides ihuae sp. nov., Bacteroides togonis sp. nov., Bacteroides ndongoniae sp. nov., Bacteroides ilei sp. nov. and Bacteroides congonensis sp. nov. identified by culturomics. | New Microbes and New Infections | 26, page(s): 73—88 | 10.1016/j.nmni.2018.06.006 |
| Angelakis2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Clostridium saudii, Clostridium saudiense | 2014 |
Angelakis, Emmanouil; Bibi, Fehmida; Ramasamy, Dhamodharan; Azhar, Esam I.; Jiman-Fatani, Asif A.; Aboushoushah, Sally M.; Lagier, Jean-Christophe; Robert, Catherine; Caputo, Aurelia; Yasir, Muhammad; Fournier, Pierre-Edouard; Raoult, Didier |
Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov. | Standards in Genomic Sciences | 9(1), | 10.1186/1944-3277-9-8 |
| Anzengruber2014 | enzymes | Lactobacillus buchneri | 2014 |
Anzengruber, Julia; Courtin, Pascal; Claes, Ingmar J. J.; Debreczeny, Monika; Hofbauer, Stefan; Obinger, Christian; Chapot-Chartier, Marie-Pierre; Vanderleyden, Jos; Messner, Paul; Schäffer, Christina |
Biochemical characterization of the major N-acetylmuramidase from Lactobacillus buchneri. | Microbiology | 160(8), page(s): 1807—1819 | 10.1099/mic.0.078162-0 |
| Arens1997 | antibiotic, antimicrobial, acid from carbohydrates, metabolites, enzymes, assimilation, utilisation | Citrobacter koseri, Citrobacter freundii, Citrobacter braakii, Citrobacter youngae, Citrobacter werkmanii, Citrobacter sedlakii | 1997 |
Arens, Sofie; Verhaegen, Jan; Verbist, Ludo |
Differentiation and susceptibility of Citrobacter isolates from patients in a university hospital. | Clinical Microbiology and Infection | 3(1), page(s): 53—57 | 10.1111/j.1469-0691.1997.tb00251.x |
| Arif2008 | summary, general characteristics, enzymes, metabolites, utilisation, oral cavity | Veillonella rogosae | 2008 |
Arif, N.; Do, T.; Byun, R.; Sheehy, E.; Clark, D.; Gilbert, S. C.; Beighton, D. |
Veillonella rogosae sp. nov., an anaerobic, Gram-negative coccus isolated from dental plaque. | International Journal of Systematic and Evolutionary Microbiology | 58(3), page(s): 581—584 | 10.1099/ijs.0.65093-0 |
| Aslam2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, fermented foods | Methylobacterium jeotgali | 2007 |
Aslam, Zubair; Lee, Chang Soo; Kim, Kyoung-Ho; Im, Wan-Taek; Ten, Leonid N.; Lee, Sung-Taik |
Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 57(3), page(s): 566—571 | 10.1099/ijs.0.64625-0 |
| Austin1979 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Pseudomonas mesophilica | 1979 |
Austin, B.; Goodfellow, M. |
Pseudomonas mesophilica, a New Species of Pink Bacteria Isolated from Leaf Surfaces. | International Journal of Systematic Bacteriology | 29(4), page(s): 373—378 | 10.1099/00207713-29-4-373 |
| Austin1981 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Alcaligenes faecalis subsp. homari | 1981 |
Austin, B.; Rodgers, C. J.; Forns, J. M.; Colwell, R. R. |
Alcaligenes faecalis subsp. homari subsp. nov., a New Group of Bacteria Isolated from Moribund Lobsters. | International Journal of Systematic Bacteriology | 31(1), page(s): 72—76 | 10.1099/00207713-31-1-72 |
| Austin2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, female genital tract | Mageeibacillus indolicus | 2015 |
Austin, Michele N.; Rabe, Lorna K.; Srinivasan, Sujatha; Fredricks, David N.; Wiesenfeld, Harold C.; Hillier, Sharon L. |
Mageeibacillus indolicus gen. nov., sp. nov.: A novel bacterium isolated from the female genital tract. | Anaerobe | 32, page(s): 37—42 | 10.1016/j.anaerobe.2014.12.003 |
| Avgustin1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Prevotella brevis, Prevotella bryantii, Prevotella albensis, Prevotella ruminicola | 1997 |
Avgustin, G.; Wallace, R. J.; Flint, H. J. |
Phenotypic Diversity among Ruminal Isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and Redefinition of Prevotella ruminicola. | International Journal of Systematic Bacteriology | 47(2), page(s): 284—288 | 10.1099/00207713-47-2-284 |
| Backer2010 | antibiotics, vaginosis | Atopobium vaginae, Atopobium minutum | 2010 |
Backer, E. De; Dubreuil, L.; Brauman, M.; Acar, J.; Vaneechoutte, M. |
In vitro activity of secnidazole against Atopobium vaginae, an anaerobic pathogen involved in bacterial vaginosis. | Clinical Microbiology and Infection | 16(5), page(s): 470—472 | 10.1111/j.1469-0691.2009.02852.x |
| Bae2004 | taxonomy | Tissierella praeacuta, Clostridium hastiforme | 2004 |
Bae, Jin-Woo; Park, Ja Ryeong; Chang, Young-Hyo; Rhee, Sung-Keun; Kim, Byung-Chun; Park, Yong-Ha |
Clostridium hastiforme is a later synonym of Tissierella praeacuta. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 947—949 | 10.1099/ijs.0.63068-0 |
| Baele2001 | summary, general characteristics, acid from carbohydrates | Lactobacillus agilis | 2001 |
Baele, M.; Devriese, L. A.; Haesebrouck, F. |
Lactobacillus agilis is an important component of the pigeon crop flora. | Journal of Applied Bacteriology | 91(3), page(s): 488—491 | 10.1046/j.1365-2672.2001.01407.x |
| Baele2008 | summary, general characteristics, enzymes, antibiotics | Helicobacter baculiformis | 2008 |
Baele, M.; Decostere, A.; Vandamme, P.; den Bulck, K. Van; Gruntar, I.; Mehle, J.; Mast, J.; Ducatelle, R.; Haesebrouck, F. |
Helicobacter baculiformis sp. nov., isolated from feline stomach mucosa. | International Journal of Systematic and Evolutionary Microbiology | 58(2), page(s): 357—364 | 10.1099/ijs.0.65152-0 |
| DeBaere2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, meningitis | Ralstonia mannitolilytica, Ralstonia pickettii Biovar Va-1&2 | 2001 |
Baere, T. De; Steyaert, S.; Wauters, G.; Vos, P. Des; Goris, J.; Coenye, T.; Suyama, T.; Verschraegen, G.; Vaneechoutte, M. |
Classification of Ralstonia pickettii biovar 3/'thomasii' strains (Pickett 1994) and of new isolates related to nosocomial recurrent meningitis as Ralstonia mannitolytica sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(2), page(s): 547—558 | 10.1099/00207713-51-2-547 |
| Bagcioglu2019 | in silico methods | Bacillus cereus, Bacillus cytotoxicus, Bacillus thuringiensis, Bacillus mycoides, Bacillus weihenstephanensis | 2019 |
Bagcioglu, Murat; Fricker, Martina; Johler, Sophia; Ehling-Schulz, Monika |
Detection and Identification of Bacillus cereus, Bacillus cytotoxicus, Bacillus thuringiensis, Bacillus mycoides and Bacillus weihenstephanensis via Machine Learning Based FTIR Spectroscopy. | Frontiers in Microbiology | 10, | 10.3389/fmicb.2019.00902 |
| Bagley1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Klebsiella planticola | 1981 |
Bagley, Susan T.; Seidler, Ramon J.; Brenner, Don J. |
Klebsiella planticola sp. nov.: A new species of enterobacteriaceae found primarily in nonclinical environments. | Current Microbiology | 6(2), page(s): 105—109 | 10.1007/bf01569013 |
| Bahaka1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium longum subsp. longum, Bifidobacterium infantis, Bifidobacterium breve | 1993 |
Bahaka, D.; Neut, C.; Khattabi, A.; Monget, D.; Gavini, F. |
Phenotypic and genomic analyses of human strains belonging or related to Bifidobacterium longum, Bifidobacterium infantis, and Bifidobacterium breve. | International Journal of Systematic Bacteriology | 43, page(s): 565—573 | 10.1099/00207713-43-3-565 |
| Baik2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Hymenobacter rigui | 2006 |
Baik, Keun Sik; Seong, Chi Nam; Moon, Eun Young; Park, Yoon-Dong; Yi, Hana; Chun, Jongsik |
Hymenobacter rigui sp. nov., isolated from wetland freshwater. | International Journal of Systematic and Evolutionary Microbiology | 56(9), page(s): 2189—2192 | 10.1099/ijs.0.64181-0 |
| Bailey1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Fusobacterium varium | 1993 |
Bailey, G. D.; D. N., Love |
Fusobacterium pseudonecrophorum Is a Synonym for Fusobacterium varium. | International Journal of Systematic Bacteriology | 43(4), page(s): 819—821 | 10.1099/00207713-43-4-819 |
| Bakir2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides finegoldii | 2006 |
Bakir, Mohammad Abdul; Kitahara, Maki; Sakamoto, Mitsuo; Matsumoto, Mitsuharu; Benno, Yoshimi |
Bacteroides finegoldii sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 56(5), page(s): 931—935 | 10.1099/ijs.0.64084-0 |
| Bakir2006a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides intestinalis | 2006 |
Bakir, M. A. |
Bacteroides intestinalis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 56(1), page(s): 151—154 | 10.1099/ijs.0.63914-0 |
| Bakir2006b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides dorei | 2006 |
Bakir, Mohammad Abdul; Sakamoto, Mitsuo; Kitahara, Maki; Matsumoto, Mitsuharu; Benno, Yoshimi |
Bacteroides dorei sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1639—1643 | 10.1099/ijs.0.64257-0 |
| Balch1979 | summary, general characteristics | Methanobrevibacter smithii, Methanobrevibacter ruminantium, Methanococcus voltae | 1979 |
Balch, W. E.; Fox, G. E.; Magrum, L. J.; Woese, C. R.; Wolfe, R. S. |
Methanogens: reevaluation of a unique biological group. | Microbiological reviews | 43, page(s): 260—296 | 10.1128/mr.43.2.260-296.1979 |
| Bannerman1991 | skin | Staphylococcus capitis subsp. ureolyticus | 1991 |
Bannerman, T. L.; Kloos, W. E. |
Staphylococcus capitis subsp. ureolyticus subsp. nov. from Human Skin. | International Journal of Systematic Bacteriology | 41(1), page(s): 144—147 | 10.1099/00207713-41-1-144 |
| Barberis2017 | antibiotic, antimicrobial, urinary tract infections, clinical sources | Actinomyces urogenitalis, Actinotignum schaalii, Bifidobacterium scardovii, Actinomyces viscosus, Actinomyces graevenitzii, Varibaculum cambriense | 2017 |
Barberis, Claudia; Budia, Mabel; Palombarani, Susana; Rodriguez, Carlos Hernán; Ramírez, María Soledad; Arias, Barbara; Bonofiglio, Laura; Famiglietti, Angela; Mollerach, Marta; Almuzara, Marisa; Vay, Carlos |
Antimicrobial susceptibility of clinical isolates of Actinomyces and related genera reveals an unusual clindamycin resistance among Actinomyces urogenitalis strains. | Journal of Global Antimicrobial Resistance | 8, page(s): 115—120 | 10.1016/j.jgar.2016.11.007 |
| Barnes1977 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Streptococcus pleomorphus | 1977 |
Barnes, E. M.; Impey, C. S.; Stevens, B. J. H.; Peel, J. L. |
Streptococcus pleomorphus sp. nov.: An Anaerobic Streptococcus Isolated Mainly from the Caeca of Birds. | Journal of General Microbiology | 102(1), page(s): 45—53 | 10.1099/00221287-102-1-45 |
| Baron1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, appendicitis | Bilophila wadsworthia | 1989 |
Baron, E. J.; Summanen, P.; Downes, J.; Roberts, M. C.; Wexler, H.; Finegold, S. M. |
Bilophila wadsworthia, gen. nov. and sp. nov., a Unique Gram-negative Anaerobic Rod Recovered from Appendicitis Specimens and Human Faeces. | Microbiology | 135(12), page(s): 3405—3411 | 10.1099/00221287-135-12-3405 |
| Baron1996 | 1996 |
Baron, Samuel |
Medical Microbiology 4th Ed. | ISBN-10: 0963117211 | page(s): 1—1273 | 21413252 PMID | ||
| Barrett1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Neisseria cinerea, Neisseria elongata, Neisseria flava, Neisseria flavescens, Neisseria mucosa, Neisseria perflava, Neisseria subflava | 1994 |
Barrett, S. J.; Sneath, P. H. A. |
A numerical phenotypic taxonomic study of the genus Neisseria. | Microbiology | 140(10), page(s): 2867—2891 | 10.1099/00221287-140-10-2867 |
| Bascomb1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Enterobacter cloacae, Hafnia alvei, Edwardsiella tarda | 1971 |
Bascomb, S.; Lapage, S. P.; Willcox, W. R.; Curtis, M. A. |
Numerical Classification of the Tribe Klebsielleae. | Journal of General Microbiology | 66(3), page(s): 279—295 | 10.1099/00221287-66-3-279 |
| Batty1958 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Actinomyces odontolyticus | 1958 |
Batty, Isabel |
Actinomyces odontolyticus, a new species of actinomycete regularly isolated from deep carious dentine. | The Journal of Pathology and Bacteriology | 75(2), page(s): 455—459 | 10.1002/path.1700750225 |
| BeazHidalgo2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Aeromonas dhakensis | 2013 |
Beaz-Hidalgo, Roxana; Martínez-Murcia, Antonio; Figueras, Maria José |
Reclassification of Aeromonas hydrophila subsp. dhakensis Huys et al. 2002 and Aeromonas aquariorum Martinez-Murcia et al. 2008 as Aeromonas dhakensis sp. nov. comb nov. and emendation of the species Aeromonas hydrophila. | Systematic and Applied Microbiology | 36(3), page(s): 171—176 | 10.1016/j.syapm.2012.12.007 |
| Beck2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, blood infection | Streptococcus gallolyticus, Streptococcus infantarius subsp. coli, Streptococcus gallolyticus subsp. pasteurianus | 2008 |
Beck, Marcella; Frodl, Reinhard; Funke, Guido |
Comprehensive Study of Strains Previously Designated Streptococcus bovis Consecutively Isolated from Human Blood Cultures and Emended Description of Streptococcus gallolyticus and Streptococcus infantarius subsp. coli. | Journal of Clinical Microbiology | 46(9), page(s): 2966—2972 | 10.1128/jcm.00078-08 |
| Becker2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Kytococcus schroeteri | 2002 |
Becker, K. |
Kytococcus schroeteri sp. nov., a novel Gram-positive actinobacterium isolated from a human clinical source. | International Journal of Systematic and Evolutionary Microbiology | 52(5), page(s): 1609—1614 | 10.1099/ijs.0.02069-0 |
| Behrendt2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium foliorum, Microbacterium phyllosphaerae, Microbacterium resistens | 2001 |
Behrendt, U.; Ulrich, A.; Schumann, P. |
Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1267—1276 | 10.1099/00207713-51-4-1267 |
| Belkacem2015 | antibiotics | Aggregatibacter aphrophilus | 2015 |
Belkacem, Anna; Caseris, Marion; Yazdanpanah, Yazdan |
A Case of Aggregatibacter aphrophilus Multiple Abscess. | Open Forum Infectious Diseases | 2(2), | 10.1093/ofid/ofv031 |
| Beltran2018 | summary, general characteristics, enzymes, metabolites | Ellagibacter isourolithinifaciens | 2018 |
Beltrán, David; Romo-Vaquero, María; Espín, Juan C.; Tomás-Barberán, Francisco A.; Selma, Maria V. |
Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut. | International Journal of Systematic and Evolutionary Microbiology | 68(5), page(s): 1707—1712 | 10.1099/ijsem.0.002735 |
| Bennett2013 | taxonomy | Neisseria oralis | 2013 |
Bennett, Julia S.; Jolley, Keith A.; Maiden, Martin C. J. |
Genome sequence analyses show that Neisseria oralis is the same species as 'Neisseria mucosa var. heidelbergensis'. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/10), page(s): 3920—3926 | 10.1099/ijs.0.052431-0 |
| Benno1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides pyogenes, Bacteroides suis, Bacteroides helcogenes | 1983 |
Benno, Yoshimi; Watabe, Junko; Mitsuoka, Tomotari |
Bacteroides pyogenes sp. nov., Bacteroides suis sp. nov., and Bacteroides helcogenes sp. nov., New Species from Abscesses and Feces of Pigs. | Systematic and Applied Microbiology | 4(3), page(s): 396—407 | 10.1016/s0723-2020(83)80024-1 |
| Benno1989 | distribution, prevalence, microflora, compilation | compilation | 1989 |
Benno, Y.; Endo, K.; Mizutani, T.; Namba, Y.; Komori, T.; Mitsuoka, T. |
Comparison of fecal microflora of elderly persons in rural and urban areas of Japan. | Applied and environmental microbiology | 55, page(s): 1100—1105 | 10.1128/aem.55.5.1100-1105.1989 |
| Benson2021 | antibiotics, antimicrobial, blood infection | Brevibacterium epidermidis, Brevibacterium casei | 2021 |
Benson, Charles E.; Tatem, Luis |
Successful Treatment of Brevibacterium Bacteremia Solely With Antimicrobial Therapy. | Cureus | 10.7759/cureus.16004 | |
| Bercovier1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Yersinia enterocolitica | 1980 |
Bercovier, Hervé; Brenner, Don J.; Ursing, Jan; Steigerwalt, Arnold G.; Fanning, G. Richard; Alonso, Jean Michel; Carter, Geraldine P.; Mollaret, H. H. |
Characterization of Yersinia enterocolitica sensu stricto. | Current Microbiology | 4(4), page(s): 201—206 | 10.1007/bf02605857 |
| Bercovier1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Yersinia aldovae | 1984 |
Bercovier, H.; Steigerwalt, A. G.; Guiyoule, A.; Huntley-Carter, G.; Brenner, D. J. |
Yersinia aldovae (Formerly Yersinia enterocolitica-Like Group X2): a New Species of Enterobacteriaceae Isolated from Aquatic Ecosystems. | International Journal of Systematic Bacteriology | 34(2), page(s): 166—172 | 10.1099/00207713-34-2-166 |
| Bergan1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Stomatococcus mucilaginosus | 1982 |
Bergan, T.; Kocur, M. |
Notes: Stomatococcus mucilaginosus gen. nov., sp. nov., ep. rev., a Member of the Family Micrococcaceae. | International Journal of Systematic Bacteriology | 32(3), page(s): 374—377 | 10.1099/00207713-32-3-374 |
| Berge2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food source | Paenibacillus graminis, Paenibacillus odorifer | 2002 |
Berge, Odile; Guinebretiere, Marie-Hélene; Achouak, Wafa; Normand, Philippe; Heulin, Thierry |
Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. | International Journal of Systematic and Evolutionary Microbiology | 52(2), page(s): 607—616 | 10.1099/00207713-52-2-607 |
| vanBerkum2006 | summary, general characteristics, enzymes, metabolites, utilisation | Bradyrhizobium denitrificans | 2006 |
van Berkum, Peter; Leibold, Juanita M.; Eardly, Bertrand D. |
Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsch and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.). | Systematic and Applied Microbiology | 29(3), page(s): 207—215 | 10.1016/j.syapm.2005.07.014 |
| Bernalier1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ruminococcus hydrogenotrophicus | 1996 |
Bernalier, A.; Willems, Anne; Leclerc, Marion; Rochet, Violaine; Collins, Matthew D. |
Ruminococcus hydrogenotrophicus sp. nov., a new H2 /CO2 -utilizing acetogenic bacterium isolated from human feces. | Archives of Microbiology | 166(3), page(s): 176—183 | 10.1007/s002030050373 |
| Bernard2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Corynebacterium stationis | 2010 |
Bernard, Kathryn A.; Wiebe, Deborah; Burdz, Tamara; Reimer, Aleisha; Ng, Betty; Singh, Cathleen; Schindle, Samantha; Pacheco, Ana Luisa |
Assignment of Brevibacterium stationis (ZoBell and Upham 1944) Breed 1953 to the genus Corynebacterium, as Corynebacterium stationis comb. nov., and emended description of the genus Corynebacterium to include isolates that can alkalinize citrate. | International Journal of Systematic and Evolutionary Microbiology | 60(4), page(s): 874—879 | 10.1099/ijs.0.012641-0 |
| Bernard2013 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | Corynebacterium propinquum | 2013 |
Bernard, Kathryn; Pacheco, Ana Luisa; Cunningham, Ian; Gill, Navdeep; Burdz, Tamara; Wiebe, Deborah |
Emendation of the description of the species Corynebacterium propinquum to include strains which produce urease. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 6), page(s): 2146—2154 | 10.1099/ijs.0.046979-0 |
| Bernard2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Brevibacterium ravenspurgense | 2016 |
Bernard, Kathryn A.; Pacheco, Ana Luisa; Burdz, Tamara; Wiebe, Deborah; Huynh, Chris; Bonner, Christine; German, Greg J.; Bernier, Anne-Marie |
Brevibacterium massiliense (Roux and Raoult 2009) is a later heterotypic synonym of Brevibacterium ravenspurgense (Mages, Frodl, Bernard and Funke 2009), using whole-genome sequence analysis as a comparative tool. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4440—4444 | 10.1099/ijsem.0.001371 |
| Bernard2018 | health, necrotizing enterocolitis, summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium neonatale, Clostridium budayi, Clostridium nitritogenes, Clostridium combesii | 2018 |
Bernard, Kathryn; Burdz, Tamara; Wiebe, Deborah; Alfa, Michelle; Bernier, Anne-Marie |
Clostridium neonatale sp. nov. linked to necrotizing enterocolitis in neonates and a clarification of species assignable to the genus Clostridium (Prazmowski 1880) emend. Lawson and Rainey 2016. | International Journal of Systematic and Evolutionary Microbiology | 68(8), page(s): 2416—2423 | 10.1099/ijsem.0.002827 |
| Bessis2016 | summary | Bariatricus massiliensis | 2016 |
Bessis, S.; Amadou, T.; Dubourg, G.; Raoult, D.; Fournier, P.-E. |
'Bariatricus massiliensis' as a new bacterial species from human gut microbiota. | New Microbes and New Infections | 12, page(s): 54—55 | 10.1016/j.nmni.2016.04.003 |
| Bessis2016a | summary | Emergencia timonensis | 2016 |
Bessis, S.; Ndongo, S.; Lagier, J.-C.; Fournier, P.-E.; Raoult, D. |
'Emergencia timonensis,' a new bacterium isolated from the stool of a healthy patient. | New Microbes and New Infections | 12, page(s): 73—75 | 10.1016/j.nmni.2016.05.001 |
| Bessis2016b | summary | Neglecta timonensis | 2016 |
Bessis, S.; Ndongo, S.; Lagier, J.-C.; Raoult, D.; Fournier, P.-E. |
'Neglecta timonensis' gen. nov., sp. nov., a new human-associated species. | New Microbes and New Infections | 13, page(s): 13—14 | 10.1016/j.nmni.2016.05.016 |
| Bhally2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, blood infection | Leptotrichia buccalis | 2005 |
Bhally, Hasan S.; Lema, Clara; Romagnoli, Mark; Borek, Anita; Wakefield, Teresa; Carroll, Karen C. |
Leptotrichia buccalis bacteremia in two patients with acute myelogenous leukemia. | Anaerobe | 11(6), page(s): 350—353 | 10.1016/j.anaerobe.2005.04.001 |
| Biavati1982 | summary, general characteristics, enzymes, acid from carbohydrates | Bifidobacterium coryneforme, Bifidobacterium pseudolongum subsp. globosum, Bifidobacterium subtile, Bifidobacterium minimum | 1982 |
Biavati, B.; Scardovi, V.; Moore, W. E. C. |
Electrophoretic Patterns of Proteins in the Genus Bifidobacterium and Proposal of Four New Species. | International Journal of Systematic Bacteriology | 32(3), page(s): 358—373 | 10.1099/00207713-32-3-358 |
| Biavati1991 | summary, general characteristics, acid from carbohydrates, metabolites | Bifidobacterium ruminantium, Bifidobacterium merycicum | 1991 |
Biavati, B.; Mattarelli, P. |
Bifidobacterium ruminantium sp. nov. and Bifidobacterium merycicum sp. nov. from the Rumens of Cattle. | International Journal of Systematic Bacteriology | 41(1), page(s): 163—168 | 10.1099/00207713-41-1-163 |
| Bilen2016 | summary | Bacteroides congonensis | 2016 |
Bilen, Melhem; Cadoret, Frederic; Daoud, Ziad; Fournier, Pierre-Edouard |
Bacteroides congonensis sp. nov., a new bacterial species from the human gut microbiota. | Human Microbiome Journal | 2, page(s): 21—22 | 10.1016/j.humic.2016.11.004 |
| Bilen2016a | summary | Parabacteroides timonensis | 2016 |
Bilen, Melhem; Cadoret, Frederic; Daoud, Ziad; Fournier, Pierre-Edouard; Raoult, Didier |
Parabacteroides timonensis sp. nov., identified in human stool. | Human Microbiome Journal | 2, page(s): 1—2 | 10.1016/j.humic.2016.10.002 |
| Bilen2017 | summary | Collinsella bouchesdurhonensis | 2017 |
Bilen, M.; Cadoret, F.; Daoud, Z.; Fournier, P.-E.; Raoult, D. |
Collinsella bouchesdurhonensis' sp. nov., identified in human stool sample. | New Microbes and New Infections | 17, page(s): 39—40 | 10.1016/j.nmni.2016.11.004 |
| Bilen2017a | summary | Congobacterium massiliense | 2017 |
Bilen, M.; Cadoret, F.; Daoud, Z.; Fournier, P. E.; Raoult, D. |
'Congobacterium massiliense' gen. nov. sp. nov., a new bacterium isolated from the gut of a pygmy ( Baka ) woman. | New Microbes and New Infections | 15, page(s): 63—64 | 10.1016/j.nmni.2016.11.005 |
| Bilen2017b | summary | Eggerthella timonensis | 2017 |
Bilen, M.; Cadoret, F.; Daoud, Z.; Fournier, P.-E.; Raoult, D. |
'Eggerthella timonensis' gen. nov. isolated from a human stool sample. | New Microbes and New Infections | 17, page(s): 41—42 | 10.1016/j.nmni.2016.11.001 |
| Bilen2017c | summary, general characteristics | Gabonibacter timonensis | 2017 |
Bilen, M.; Cadoret, F.; Dubourg, G.; Daoud, Z.; Fournier, P.-E.; Raoult, D. |
'Gabonibacter timonensis' sp. nov., a new bacterium isolated from the human gut of a Pygmy woman. | New Microbes and New Infections | 16, page(s): 39—40 | 10.1016/j.nmni.2016.12.017 |
| Bilen2017d | summary | Mobilibacterium massiliense, Mobilibacterium timonense | 2017 |
Bilen, M.; Ndongo, S.; Cadoret, F.; Dubourg, G.; Daoud, Z.; Fournier, P.-E.; Raoult, D. |
'Mobilibacterium massiliense' gen. nov. and 'Mobilibacterium timonense' sp. nov., identified in a human stool specimen. | New Microbes and New Infections | 15, page(s): 61—62 | 10.1016/j.nmni.2016.11.008 |
| Bilen2017e | summary | Libanicoccus massiliensis | 2017 |
Bilen, M.; Cadoret, F.; Fournier, P.-E.; Daoud, Z.; Raoult, D. |
'Libanicoccus massiliensis' gen. nov., sp. nov., a new bacterium isolated from a stool sample from a pygmy woman. | New Microbes and New Infections | 15, page(s): 40—41 | 10.1016/j.nmni.2016.10.006 |
| Bilen2017f | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Phoenicibacter massiliensis, Phoenicibacter congonensis | 2017 |
Bilen, M.; Cadoret, F.; Dubourg, G.; Fournier, P.-E.; Daoud, Z.; Raoult, D. |
'Phoenicibacter massiliensis' gen. nov., sp. nov., a new bacterium isolated from the human gut of a pygmy woman. | New Microbes and New Infections | 19, page(s): 43—44 | 10.1016/j.nmni.2017.04.003 |
| Bilen2017g | summary | Pygmaiobacter massiliensis | 2017 |
Bilen, M.; Mbogning, M. D.; Cadoret, F.; Dubourg, G.; Daoud, Z.; Fournier, P. E.; Raoult, D. |
'Pygmaiobacter massiliensis' sp. nov., a new bacterium isolated from the human gut of a Pygmy woman. | New Microbes and New Infections | 16, page(s): 37—38 | 10.1016/j.nmni.2016.12.015 |
| Bilen2017h | summary | Raoultibacter timonensis | 2017 |
Bilen, M.; Cadoret, F.; Dubourg, G.; Daoud, Z.; Fournier, P. E.; Raoult, D. |
'Raoultibacter timonensis' gen. nov., sp. nov. , a new bacterium isolated from the human gut of a Pygmy woman. | New Microbes and New Infections | 16, page(s): 45—46 | 10.1016/j.nmni.2016.12.016 |
| Bilen2018 | summary, general characteristics | Actinomyces minihominis, Sanguibacter massiliensis, Clostridium minihomine, Neobittarella massiliensis, Miniphocibacter massiliensis | 2018 |
Bilen, M.; Founkou, M. D. Mbogning; Cadoret, F.; Dubourg, G.; Daoud, Z.; Raoult, D. |
Sanguibacter massiliensis sp. nov., Actinomyces minihominis sp. nov., Clostridium minihomine sp. nov., Neobittarella massiliensis gen. nov. and Miniphocibacter massiliensis gen. nov., new bacterial species isolated by culturomics from human stool samples. | New Microbes and New Infections | 24, page(s): 21—25 | 10.1016/j.nmni.2018.03.002 |
| Bilen2018a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Collinsella bouchesdurhonensis | 2018 |
Bilen, Melhem; Beye, Mamadou; Fonkou, Maxime Descartes Mbogning; Khelaifia, Saber; Cadoret, Frédéric; Armstrong, Nicholas; Nguyen, Thi Tien; Delerce, Jérémy; Daoud, Ziad; Raoult, Didier; Fournier, Pierre-Edouard |
Genomic and phenotypic description of the newly isolated human species Collinsella bouchesdurhonensis sp. nov. | MicrobiologyOpen | 7(5), page(s): e00580 | 10.1002/mbo3.580 |
| Bilen2018b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Eggerthella timonensis | 2018 |
Bilen, Melhem; Fonkou, Maxime Descartes Mbogning; Tomei, Enora; Armstrong, Nicholas; Bittar, Fadi; Lagier, Jean-Christophe; Daoud, Ziad; Fournier, Pierre-Edouard; Raoult, Didier; Cadoret, Frédéric |
Eggerthella timonensis sp. nov, a new species isolated from the stool sample of a pygmy female. | MicrobiologyOpen | 7(5), page(s): e00575 | 10.1002/mbo3.575 |
| Bilen2018c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Libanicoccus massiliensis | 2018 |
Bilen, M.; Cadoret, F.; Richez, M.; Tomei, E.; Daoud, Z.; Raoult, D.; Fournier, P.-E. |
Libanicoccus massiliensis gen. nov., sp. nov., a new bacterium isolated from human stool. | New Microbes and New Infections | 21, page(s): 63—71 | 10.1016/j.nmni.2017.11.001 |
| Bilen2018d | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Phoenicibacter congonensis | 2018 |
Bilen, Melhem; Fonkou, Maxime Descartes Mbogning; Caputo, Aurélia; Nguyen, Thi-Thien; Pinto, Fabrizio Di; Bittar, Fadi; Daoud, Ziad; Levasseur, Anthony; Fournier, Pierre Edouard; Raoult, Didier; Cadoret, Frédéric |
Phoenicibacter congonensis gen. nov., sp. nov., a new genus isolated from the human gut and its description using a taxonogenomic approach. | Antonie van Leeuwenhoek | 112(5), page(s): 775—784 | 10.1007/s10482-018-01211-1 |
| Bilen2019 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Dysgonomonas massiliensis | 2019 |
Bilen, Melhem; Fonkou, Maxime Descartes Mbogning; Dubourg, Grégory; Tomei, Enora; Richez, Magali; Delerce, Jérémy; Levasseur, Anthony; Daoud, Ziad; Raoult, Didier; Cadoret, Frédéric |
Dysgonomonas massiliensis sp. nov., a new species isolated from the human gut and its taxonogenomic description. | Antonie van Leeuwenhoek | 112(6), page(s): 935—945 | 10.1007/s10482-019-01227-1 |
| Bittar2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus jeddahensis | 2015 |
Bittar, Fadi; Bibi, Fehmida; Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Azhar, Esam I.; Jiman-Fatani, Asif A.; Al-Ghamdi, Ahmed K.; Nguyen, Ti Thien; Yasir, Muhammad; Fournier, Pierre-Edouard; Raoult, Didier |
Non contiguous-finished genome sequence and description of Bacillus jeddahensis sp. nov. | Standards in Genomic Sciences | 10(1), | 10.1186/s40793-015-0024-y |
| Bjoerkroth2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food source, clinical sources | Weissella confusa, Weissella cibaria | 2002 |
Björkroth, K. Johanna; Schillinger, Ulrich; Geisen, Rolf; Weiss, Norbert; Hoste, Bart; Holzapfel, Wilhelm H.; Korkeala, Hannu J.; Vandamme, Peter |
Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 52(1), page(s): 141—148 | 10.1099/00207713-52-1-141 |
| Bluemel2001 | summary, general characteristics, enzymes, utilisation | Pigmentiphaga kullae | 2001 |
Blümel, S.; Mark, B.; Busse, H. J.; Kämpfer, P.; Stolz, A. |
Pigmentiphaga kullae gen. nov., sp. nov., a novel member of the family Alcaligenaceae with the ability to decolorize azo dyes aerobically. | International Journal of Systematic and Evolutionary Microbiology | 51(5), page(s): 1867—1871 | 10.1099/00207713-51-5-1867 |
| Boerlin1992 | summary, taxonomy | Listeria ivanovii subsp. londoniensis | 1992 |
Boerlin, P.; Rocourt, J.; Grimont, F.; Grimont, P. A. D.; Jacquet, C.; Piffaretti, J.-C. |
Listeria ivanovii subsp. londoniensis subsp. nov. | International Journal of Systematic Bacteriology | 42(1), page(s): 69—73 | 10.1099/00207713-42-1-69 |
| Bojalil1962 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Mycobacterium gordonae | 1962 |
Bojalil, L. F., Cerbón, J., and Trujillo, A. |
Adansonian classification of mycobacteria. | Journal of General Microbiology | 28, page(s): 333–346 | 10.1099/00221287-28-2-333 |
| Borrel2013 | summary | Candidatus Methanomassiliicoccus intestinalis | 2013 |
Borrel, Guillaume; Harris, Hugh M. B.; Parisot, Nicolas; Gaci, Nadia; Tottey, William; Mihajlovski, Agnes; Deane, Jennifer; Gribaldo, Simonetta; Bardot, Olivier; Peyretaillade, Eric; Peyret, Pierre; O'Toole, Paul W.; Brugere, Jean-François |
Genome Sequence of 'Candidatus Methanomassiliicoccus intestinalis' Issoire-Mx1, a Third Thermoplasmatales -Related Methanogenic Archaeon from Human Feces. | Genome Announcements | 1(4), | 10.1128/genomea.00453-13 |
| Bortolotti2019 | summary, antibiotics, blood infection | Clostridium ventriculi | 2019 |
Bortolotti, Perrine; Kipnis, Eric; Faure, Emmanuel; Faure, Karine; Wacrenier, Agnes; Fauquembergue, Maud; Penven, Malo; Messaadi, Sophian; Marceau, Laure; Dessein, Rodrigue; Guern, Rémi Le |
Clostridium ventriculi bacteremia following acute colonic pseudo-obstruction: A case report. | Anaerobe | 59, page(s): 32—34 | 10.1016/j.anaerobe.2019.05.005 |
| Bosshard2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Turicibacter sanguinis | 2002 |
Bosshard, P. P. |
Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium. | International Journal of Systematic and Evolutionary Microbiology | 52(4), page(s): 1263—1266 | 10.1099/ijs.0.02056-0 |
| Bouchard1996 | summary, general characteristics, enzymes, metabolites | Desulfitobacterium hafniense | 1996 |
Bouchard, B.; Beaudet, R.; Villemur, R.; Mcsween, G.; Lepine, F.; Bisaillon, J.-G. |
Isolation and Characterization of Desulfitobacterium frappieri sp. nov., an Anaerobic Bacterium Which Reductively Dechlorinates Pentachlorophenol to 3-Chlorophenol. | International Journal of Systematic Bacteriology | 46(4), page(s): 1010—1015 | 10.1099/00207713-46-4-1010 |
| Bouvet1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Acinetobacter baumannii, Acinetobacter haemolyticus, Acinetobacter johnsonii, Acinetobacter junii, Acinetobacter calcoaceticus, Acinetobacter lwoffii, Acinetobacter genomospecies 3 | 1986 |
Bouvet, P. J. M.; Grimont, P. A. D. |
Taxonomy of the Genus Acinetobacter with the Recognition of Acinetobacter baumannii sp. nov., Acinetobacter haemolyticus sp. nov., Acinetobacter johnsonii sp. nov., and Acinetobacter junii sp. nov. and Emended Descriptions of Acinetobacter calcoaceticus and Acinetobacter lwoffii. | International Journal of Systematic Bacteriology | 36(2), page(s): 228—240 | 10.1099/00207713-36-2-228 |
| Bouvet1989 | summary, general characteristics, enzymes, clinical sources | Abiotrophia defectiva | 1989 |
Bouvet, A.; Grimont, F.; Grimont, P. A. D. |
Streptococcus defectivus sp. nov. and Streptococcus adjacens sp. nov., Nutritionally Variant Streptococci from Human Clinical Specimens. | International Journal of Systematic and Evolutionary Microbiology | 39(3), page(s): 290—294 | 10.1099/00207713-39-3-290 |
| Bouvet2013 | clinical specimens, blood infection | Clostridium botulinum Gp III | 2013 |
Bouvet, P.; Ruimy, R.; Bouchier, C.; Faucher, N.; Mazuet, C.; Popoff, M. R. |
An Atypical Clostridium Strain Related to the Clostridium botulinum Group III Strain Isolated from a Human Blood Culture. | Journal of Clinical Microbiology | 52(1), page(s): 339—343 | 10.1128/jcm.00390-13 |
| Bovre1967 | summary, general characteristics, enzymes, metabolites, utilisation | Moraxella osloensis, Moraxella nonliquefaciens | 1967 |
Bovre, K.; Henriksen, S. D. |
A new Moraxella species, Moraxella osloensis, and a revised description of Moraxella nonliquefaciens. | International Journal of Systematic Bacteriology | 17(2), page(s): 127—135 | 10.1099/00207713-17-2-127 |
| Bovre1970 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Neisseria elongata | 1970 |
Bovre, K.; Holten, E. |
Neisseria elongata sp. nov., a Rod-shaped Member of the Genus Neisseria. Re-evaluation of Cell Shape as a Criterion in Classification. | Journal of General Microbiology | 60(1), page(s): 67—75 | 10.1099/00221287-60-1-67 |
| Bovre1979 | taxonomy | Moraxella catarrhalis, Moraxella osloensis | 1979 |
Bovre, K. |
Proposal to Divide the Genus Moraxella Lwoff 1939 emend. Henriksen and Bovre 1968 into Two Subgenera, Subgenus Moraxella (Lwoff 1939) Bovre 1979 and Subgenus Branhamella (Catlin 1970) Bovre 1979. | International Journal of Systematic Bacteriology | 29(4), page(s): 403—406 | 10.1099/00207713-29-4-403 |
| Boyer1973 | summary, general characteristics | Bacillus alcalophilus subsp. halodurans, Bacillus alcalophilus, Bacillus halodurans | 1973 |
Boyer, E. W.; Ingle, M. B.; Mercer, G. D. |
Bacillus alcalophilus subsp. halodurans subsp. nov.: An Alkaline-Amylase-Producing, Alkalophilic Organism. | International Journal of Systematic Bacteriology | 23(3), page(s): 238—242 | 10.1099/00207713-23-3-238 |
| Brady2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Pantoea septica, Pantoea eucrina, Pantoea brenneri, Pantoea conspicua, Pantoea cypripedii, Pantoea agglomerans | 2010 |
Brady, Carrie L.; Cleenwerck, Ilse; Venter, Stephanus N.; Engelbeen, Katrien; Vos, Paul De; Coutinho, Teresa A. |
Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 60(10), page(s): 2430—2440 | 10.1099/ijs.0.017301-0 |
| Brady2013 | summary, general characteristics, enzymes, metabolites, utilisation | Franconibacter pulveris, Lelliottia nimipressuralis, Lelliottia amnigena, Pluralibacter gergoviae, Pluralibacter pyrinus, Kosakonia cowanii, Kosakonia radicincitans, Kosakonia oryzae, Kosakonia arachidis, Cronobacter zurichensis, Cronobacter helveticus, Cronobacter pulveris | 2013 |
Brady, Carrie; Cleenwerck, Ilse; Venter, Stephanus; Coutinho, Teresa; Vos, Paul De |
Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter. | Systematic and Applied Microbiology | 36(5), page(s): 309—319 | 10.1016/j.syapm.2013.03.005 |
| Brandt2009 | antibiotics | Streptococcus dysgalactiae subsp. equisimilis | 2009 |
Brandt, Claudia M.; Spellerberg, Barbara |
Human infections due to Streptococcus dysgalactiae subspecies equisimilis. | Clinical Infectious Diseases | 49(5), page(s): 766—772 | 10.1086/605085 |
| Braune2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Catenibacillus scindens | 2018 |
Braune, Annett; Blaut, Michael |
Catenibacillus scindens gen. nov., sp. nov., a C-deglycosylating human intestinal representative of the Lachnospiraceae. | International Journal of Systematic and Evolutionary Microbiology | 68(10), page(s): 3356—3361 | 10.1099/ijsem.0.003001 |
| Brayton1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Vibrio alginolyticus, Vibrio cholerae, Vibrio cincinnatiensis, Vibrio fluvialis, Vibrio furnissii, Vibrio parahaemolyticus | 1986 |
Brayton, P. R.; Bode, R. B.; Colwell, R. R.; MacDonell, M. T.; Hall, H. L.; Grimes, D. J.; West, P. A.; Bryant, T. N. |
Vibrio cincinnatiensis sp. nov., a new human pathogen. | Journal of Clinical Microbiology | 23(1), page(s): 104—108 | 10.1128/jcm.23.1.104-108.1986 |
| Brennan2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, fermented foods | Microbacterium gubbeenense | 2001 |
Brennan, N. M.; Brown, R.; Goodfellow, M.; Ward, A. C.; Beresford, T. P.; Vancanneyt, M.; Cogan, T. M.; Fox, P. F. |
Microbacterium gubbeenense sp. nov., from the surface of a smear-ripened cheese. | International Journal of Systematic and Evolutionary Microbiology | 51(6), page(s): 1969—1976 | 10.1099/00207713-51-6-1969 |
| Brenner1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Enterobacter gergoviae | 1980 |
Brenner, D. J.; Richard, C.; Steigerwalt, A. G.; Asbury, M. A.; Mandel, M. |
Enterobacter gergoviae sp. nov.: a New Species of Enterobacteriaceae Found in Clinical Specimens and the Environment. | International Journal of Systematic Bacteriology | 30(1), page(s): 1—6 | 10.1099/00207713-30-1-1 |
| Brenner1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Escherichia hermannii | 1982 |
Brenner, D. J.; Davis, B. R.; Steigerwalt, A. G.; Riddle, C. F.; McWhorter, A. C.; Allen, S. D.; Farmer, J. J.; Saitoh, Y.; Fanning, G. R. |
Atypical biogroups of Escherichia coli found in clinical specimens and description of Escherichia hermannii sp. nov. | Journal of Clinical Microbiology | 15(4), page(s): 703—713 | 10.1128/jcm.15.4.703-713.1982 |
| Brenner1982a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, wound infections | Escherichia vulneris | 1982 |
Brenner, Don J.; McWhorter, Alma C.; Knutson, Jean K. Leete; Steigerwalt, Arnold G. |
Escherichia vulneris : a New Species of Enterobacteriaceae Associated with Human Wounds. | Journal of Clinical Microbiology | 15(6), page(s): 1133—1140 | 10.1128/jcm.15.6.1133-1140.1982 |
| Brenner1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Vibrio furnissii, Vibrio fluvialis | 1983 |
Brenner, D. J.; Hickman-Brenner, F. W.; Lee, J. V.; Steigerwalt, A. G.; Fanning, G. R.; Hollis, D. G.; Farmer, J. J.; Weaver, R. E.; Joseph, S. W.; Seidler, R. J. |
Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment. | Journal of Clinical Microbiology | 18(4), page(s): 816—824 | 10.1128/jcm.18.4.816-824.1983 |
| Brenner1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Enterobacter asburiae, Erwinia nimipressuralis, Enterobacter dissolvens, Enterobacter nimipressuralis | 1986 |
Brenner, D. J.; McWhorter, A. C.; Kai, A.; Steigerwalt, A. G.; Farmer, J. J. |
Enterobacter asburiae sp. nov., a new species found in clinical specimens, and reassignment of Erwinia dissolvens and Erwinia nimipressuralis to the genus Enterobacter as Enterobacter dissolvens comb. nov. and Enterobacter nimipressuralis comb. nov. | Journal of Clinical Microbiology | 23(6), page(s): 1114—1120 | 10.1128/jcm.23.6.1114-1120.1986 |
| Brenner1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Citrobacter farmeri, Citrobacter youngae, Citrobacter braakii, Citrobacter werkmanii, Citrobacter sedlakii | 1993 |
Brenner, D. J.; Grimont, P. A. D.; Steigerwalt, A. G.; Fanning, G. R.; Ageron, E.; Riddle, C. F. |
Classification of Citrobacteria by DNA Hybridization: Designation of Citrobacter farmeri sp. nov., Citrobacter youngae sp. nov., Citrobacter braakii sp. nov., Citrobacter werkmanii sp. nov., Citrobacter sedlakii sp. nov., and Three Unnamed Citrobacter Genomospecies. | International Journal of Systematic Bacteriology | 43(4), page(s): 645—658 | 10.1099/00207713-43-4-645 |
| Brenner1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Citrobacter gillenii, Citrobacter murliniae, Citrobacter koseri, Citrobacter amalonaticus, Citrobacter youngae, Citrobacter braakii, Citrobacter sedlakii, Citrobacter farmeri | 1999 |
Brenner, D. J.; O'Hara, C. M.; Grimont, P. A.; Janda, J. M.; Falsen, E.; Aldova, E.; Ageron, E.; Schindler, J.; Abbott, S. L.; Steigerwalt, A. G. |
Biochemical identification of Citrobacter species defined by DNA hybridization and description of Citrobacter gillenii sp. nov. (formerly Citrobacter genomospecies 10) and Citrobacter murliniae sp. nov. (formerly Citrobacter genomospecies 11). | Journal of Clinical Microbiology | 37, page(s): 2619—2624 | 10.1128/JCM.37.8.2619-2624.1999 |
| Brown1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, leprosy | Corynebacterium tuberculostearicum | 1984 |
Brown, S.; Lanéelle, M.-A.; Asselineau, J.; Barksdale, L. |
Description of Corynebacterium tuberculostearicum sp. nov., a leprosy-derived corynebacterium. | Annales de l'Institut Pasteur / Microbiologie | 135(3), page(s): 251—267 | 10.1016/s0769-2609(84)80093-9 |
| Brown2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Cellulomonas denverensis, Cellulomonas hominis | 2005 |
Brown, June M.; Frazier, Rodrick P.; Morey, Roger E.; Steigerwalt, Arnold G.; Pellegrini, Gerald J.; Daneshvar, Maryam I.; Hollis, Dannie G.; McNeil, Michael M. |
Phenotypic and Genetic Characterization of Clinical Isolates of CDC Coryneform Group A-3: Proposal of a New Species of Cellulomonas , Cellulomonas denverensis sp. nov. | Journal of Clinical Microbiology | 43(4), page(s): 1732—1737 | 10.1128/jcm.43.4.1732-1737.2005 |
| Browne2016 | bile-activated, endospore, summary, compilation | Fusicatenibacter saccharivorans, Blautia obeum, Eubacterium rectale, Anaerobutyricum hallii, Lachnospira eligens, Coprococcus eutactus, Coprococcus comes, Ruminococcus gnavus, Escherichia coli, Clostridioides difficile, Clostridium innocuum, Flavonifractor plautii, Hungatella hathewayi, Clostridium hathewayi, Clostridium baratii, Bacteroides uniformis, Bacteroides coprocola, Phocaeicola coprocola, Bacteroides vulgatus, Bacteroides caccae, Alistipes finegoldii, Bifidobacterium adolescentis, Bifidobacterium bifidum, Collinsella aerofaciens, Acetivibrio thermocellus, Faecalicatena contorta | 2016 |
Browne, Hilary P.; Forster, Samuel C.; Anonye, Blessing O.; Kumar, Nitin; Neville, B. Anne; Stares, Mark D.; Goulding, David; Lawley, Trevor D. |
Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation. | Nature | 533(7604), page(s): 543—546 | 10.1038/nature17645 |
| Brueggemann2019 | blood infection | Staphylococcus saccharolyticus | 2019 |
Brüggemann, Holger; Poehlein, Anja; Brzuszkiewicz, Elzbieta; Scavenius, Carsten; Enghild, Jan J.; Al-Zeer, Munir A.; Brinkmann, Volker; Jensen, Anders; Söderquist, Bo |
Staphylococcus saccharolyticus Isolated From Blood Cultures and Prosthetic Joint Infections Exhibits Excessive Genome Decay. | Frontiers in Microbiology | 10, | 10.3389/fmicb.2019.00478 |
| Bryant1956 | metabolites, general characteristics, utilisation, enzymes, acid from carbohydrates, summary | Lachnospira multipara, Succinivibrio dextrinosolvens | 1956 |
Bryant, M. P.; Small, N. |
Characteristics of two new genera of anaerobic curved rods isolated from the rumen of cattle. | Journal of bacteriology | 72, page(s): 16—21 | 10.1128/jb.72.1.22-26.1956 |
| Bryant1956a | metabolites, general characteristics, utilisation, enzymes, acid from carbohydrates, summary | Butyrivibrio fibrisolvens | 1956 |
Bryant, Marvin P.; Small, Nola |
The Anaerobic Monotrichous Butyric Acid-Producing Curved Rod-Shaped Bacteria of the Rumen. | Journal of bacteriology | 72(1), page(s): 22—26 | 10.1128/jb.72.1.16-21.1956 |
| Bryant1958 | summary, general characteristics, acid from carbohydrates, metabolites | Bacteroides Ruminicola, Succinimonas Amylolytica | 1958 |
Bryant, M. P.; Small, Nola; Bouma, Cecelia; Chu, Hilda |
Bacteroides Ruminicola n. sp. and Succinimonas Amylolytica the New Genus and Species. | Journal of bacteriology | 76(1), page(s): 15—23 | 10.1128/jb.76.5.529-537.1958 |
| Bryant1958a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Cillobacterium cellulosolvens, Eubacterium cellulosolvens | 1958 |
Bryant, M. P.; Small, N.; Bouma, C.; Robinson, I. M. |
Characteristics of ruminal anaerobic celluloytic cocci and Cillobacterium cellulosolvens n. sp. | Journal of bacteriology | 76, page(s): 529—537 | 10.1128/jb.76.1.15-23.1958 |
| Bryant1959 | general, educational | Selenomonas ruminantium, Bacillus spp., Cutibacterium spp., Lactobacillus spp., Clostridium spp., Streptococcus spp., Eubacterium spp., Lachnospira spp., Bacteroides spp., Fusobacterium spp., Butyrivibrio spp., Peptostreptococcus spp., Ruminococcus spp., Veillonella spp. | 1959 |
Bryant, M. P. |
Bacterial species of the rumen. | Bacteriological reviews | 23, page(s): 125—153 | 10.1128/br.23.3.125-153.1959 |
| Buchanan1962 | summary | Actinomyces propionicus | 1962 |
Buchanan, B. B.; L., Pine |
Characterization of a Propionic Acid Producing Actinomycete, Actinomyces propionicus, sp. nov. | Journal of General Microbiology | 28(2), page(s): 305—323 | 10.1099/00221287-28-2-305 |
| Buckel1994 | summary, general characteristics, enzymes, metabolites, utilisation | Clostridium viride | 1994 |
Buckel, Wolfgang; Janssen, Peter H.; Schuhmann, Alexandra; Eikmanns, Ulrich; Messner, Paul; Sleytr, Uwe; Liesack, Werner |
Clostridium viride sp. nov., a strictly anaerobic bacterium using 5-aminovalerate as growth substrate, previously assigned to Clostridium aminovalericum. | Archives of Microbiology | 162(6), page(s): 387—394 | 10.1007/bf00282102 |
| Buczolits2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium paraoxydans | 2008 |
Buczolits, Sandra; Schumann, Peter; Valens, Maria; Rosselló-Mora, Ramón; Busse, Hans-Jürgen |
Identification of a bacterial strain isolated from the liver of a laboratory mouse as Microbacterium paraoxydans and emended description of the species Microbacterium paraoxydans Laffineur et al 2003. | Indian Journal of Microbiology | 48(2), page(s): 243—251 | 10.1007/s12088-008-0035-0 |
| Bui2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, butyrate | Anaerostipes rhamnosivorans | 2014 |
Bui, Thi Phuong Nam; de Vos, Willem M.; Plugge, Caroline M. |
Anaerostipes rhamnosivorans sp. nov., a human intestinal, butyrate-forming bacterium. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/3), page(s): 787—793 | 10.1099/ijs.0.055061-0 |
| Busse2005 | summary, general characteristics, enzymes, metabolites, utilisation | Sphingomonas abaci, Sphingomonas panni | 2005 |
Busse, Hans-Jürgen; Hauser, Elke; Kämpfer, Peter |
Description of two novel species, Sphingomonas abaci sp. nov. and Sphingomonas panni sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(6), page(s): 2565—2569 | 10.1099/ijs.0.63872-0 |
| Busse2016 | summary, general characteristics, metabolites, utilisation | Arthrobacter roseus, Pseudarthrobacter oxydans, Pseudarthrobacter polychromogenes, Glutamicibacter arilaitensis, Glutamicibacter protophormiae, Paenarthrobacter aurescens, Paenarthrobacter ilicis, Pseudoglutamicibacter cumminsii | 2016 |
Busse, Hans-Jürgen |
Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudoglutamicibacter gen. nov., Paenarthrobacter gen. nov. and Pseudarthrobacter gen. nov., and emended description of Arthrobacter roseus. | International Journal of Systematic and Evolutionary Microbiology | 66(1), page(s): 9—37 | 10.1099/ijsem.0.000702 |
| Koch1995 | general characteristics, utilisation | Rhodococcus erythropolis | 1995 |
Koch, C.; Klatte, S.; Schumann, P.; Burghardt, J.; Kroppenstedt, R. M.; Stackebrandt, E. |
Transfer of Arthrobacter picolinophilus Tate and Ensign 1974 to Rhodococcus erythropolis. | International Journal of Systematic Bacteriology | 45(3), page(s): 576—577 | 10.1099/00207713-45-3-576 |
| Caccamo2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus vulcani = Geobacillus vulcani | 2000 |
Caccamo, D.; Gugliandolo, C.; Stackebrandt, E.; Maugeri, T. L. |
Bacillus vulcani sp. nov., a novel thermophilic species isolated from a shallow marine hydrothermal vent. | International Journal of Systematic and Evolutionary Microbiology | 50(6), page(s): 2009—2012 | 10.1099/00207713-50-6-2009 |
| Cadoret2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilionigeriensis, Bacillus phocaeensis, Bacillus tuaregi | 2017 |
Cadoret, F.; Alou, M. T.; Afouda, P.; Traore, I. S.; Bréchard, L.; Michelle, C.; Pinto, F. Di; Andrieu, C.; Delerce, J.; Levasseur, A.; Fournier, P.-E.; Raoult, D. |
Non-contiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics. | New Microbes and New Infections | 19, page(s): 45—59 | 10.1016/j.nmni.2017.04.005 |
| Cai2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Cellulosilyticum ruminicola, Cellulosilyticum lentocellum | 2010 |
Cai, Shichun; Dong, Xiuzhu |
Cellulosilyticum ruminicola gen. nov., sp. nov., isolated from the rumen of yak, and reclassification of Clostridium lentocellum as Cellulosilyticum lentocellum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 60(4), page(s): 845—849 | 10.1099/ijs.0.014712-0 |
| Cakir2019 | antibiotics | Escherichia hermannii, Enterobacter aerogenes | 2019 |
Cakir, Nedim; Süer, Kaya; Duygu, Hamza |
A Very Rare Diabetic Foot Co-infection Due to Escherichia hermannii and Enterobacter aerogenes in an Elderly Patient. | Journal of Clinical and Diagnostic Research | 10.7860/jcdr/2019/42078.13246 | |
| Caputo2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Microvirga massiliensis | 2016 |
Caputo, Aurélia; Lagier, Jean-Christophe; Azza, Saïd; Robert, Catherine; Mouelhi, Donia; Fournier, Pierre-Edouard; Raoult, Didier |
Microvirga massiliensis sp. nov., the human commensal with the largest genome. | MicrobiologyOpen | 5(2), page(s): 307—322 | 10.1002/mbo3.329 |
| Cardon1946 | summary, general characteristics, enzymes, metabolites, utilisation | Clostridium propionicum, Diplococcus glycinophilus = Parvimonas micra | 1946 |
Cardon, B. P.; Barker, H. A. |
Two New Amino-Acid-Fermenting Bacteria, Clostridium propionicum and Diplococcus glycinophilus. | Journal of bacteriology | 52(6), page(s): 629—634 | 10.1128/jb.52.6.629-634.1946 |
| Carlier2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaeroglobus geminatus | 2002 |
Carlier, J. P. |
Anaeroglobus geminatus gen. nov., sp. nov., a novel member of the family Veillonellaceae. | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 983—986 | 10.1099/ijs.0.02018-0 |
| Carlier2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Oribacterium sinus | 2004 |
Carlier, Jean-Philippe; K'ouas, Guylene; Bonne, Isabelle; Lozniewski, Alain; Mory, Francine |
Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes). | International Journal of Systematic and Evolutionary Microbiology | 54(5), page(s): 1611—1615 | 10.1099/ijs.0.63060-0 |
| Carlier2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Moryella indoligenes | 2007 |
Carlier, Jean-Philippe; K'ouas, Guylene; Han, Xiang Y. |
Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 725—729 | 10.1099/ijs.0.64705-0 |
| Carlier2010 | summary, general characteristics, enzymes, metabolites, antibiotics | Flavonifractor plautii, Pseudoflavonifractor capillosus | 2010 |
Carlier, Jean-Philippe; Bedora-Faure, Marie; K'ouas, Guylene; Alauzet, Corentine; Mory, Francine |
Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (S\'eguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 60(3), page(s): 585—590 | 10.1099/ijs.0.016725-0 |
| Carlin2021 | water source | Listeria cossartiae, Listeria immobilis, Listeria portnoyi, Listeria rustica | 2021 |
Carlin, Catharine R.; Liao, Jingqiu; Weller, Dan; Guo, Xiaodong; Orsi, Renato; Wiedmann, Martin |
Listeria cossartiae sp. nov., Listeria immobilis sp. nov., Listeria portnoyi sp. nov. and Listeria rustica sp. nov., isolated from agricultural water and natural environments. | International Journal of Systematic and Evolutionary Microbiology | 71(5), | 10.1099/ijsem.0.004795 |
| Carnahan1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Aeromonas trota | 1991 |
Carnahan, A. M.; Chakraborty, T.; Fanning, G. R.; Verma, D.; Ali, A.; Janda, J. M.; Joseph, S. W. |
Aeromonas trota sp. nov., an ampicillin-susceptible species isolated from clinical specimens. | Journal of Clinical Microbiology | 29(6), page(s): 1206—1210 | 10.1128/jcm.29.6.1206-1210.1991 |
| Cassir2014 | summary, general characteristics, enzymes, metabolites, utilisation | Bacteroides neonati | 2014 |
Cassir, Nadim; Croce, Olivier; Pagnier, Isabelle; Benamar, Samia; Couderc, Carine; Robert, Catherine; Raoult, Didier; Scola, Bernard La |
Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium. | Standards in Genomic Sciences | 9(3), page(s): 794—806 | 10.4056/sigs.5159098 |
| Cato1968 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium oroticum | 1968 |
E. P., Cato; Moore, W. E. C.; Holdeman, L. V. |
Clostridium oroticum comb. nov. amended description. | International Journal of Systematic Bacteriology | 18(1), page(s): 9—13 | 10.1099/00207713-18-1-9 |
| Cato1970 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium limosum | 1970 |
E. P., Cato; Cummins, C. S.; Smith, L. D. S. |
Clostridium limosum andre in Prevot 1948, 165 amended description and pathogenic characteristics. | International Journal of Systematic Bacteriology | 20(3), page(s): 305—316 | 10.1099/00207713-20-3-305 |
| Cato1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides hypermegas | 1976 |
E. P., Cato; Barnes, E. M. |
Designation of the Neotype Strain of Bacteroides hypermegas Harrison and Hansen. | International Journal of Systematic Bacteriology | 26(4), page(s): 494—497 | 10.1099/00207713-26-4-494 |
| Cato1976a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides fragilis, Bacteroides ovatus, Bacteroides distasonis, Bacteroides thetaiotaomicron, Bacteroides vulgatus | 1976 |
E. P., Cato; Johnson, J. L. |
Reinstatement of Species Rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of Neotype Strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers. | International Journal of Systematic Bacteriology | 26(2), page(s): 230—237 | 10.1099/00207713-26-2-230 |
| Cato1981 | taxonomy | Eubacterium limosum | 1981 |
E. P., Cato; Holdeman, L. V.; Moore, W. E. C. |
Designation of Eubacterium limosum (Eggerth) Prevot as the Type Species of Eubacterium Request for an Opinion. | International Journal of Systematic Bacteriology | 31(2), page(s): 209—210 | 10.1099/00207713-31-2-209 |
| Cato1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Fusobacterium alocis, Fusobacterium sulci | 1985 |
E. P., Cato; Moore, L. V. H.; Moore, W. E. C. |
Fusobacterium alocis sp. nov. and Fusobacterium sulci sp. nov. from the Human Gingival Sulcus. | International Journal of Systematic Bacteriology | 35(4), page(s): 475—477 | 10.1099/00207713-35-4-475 |
| Chamkha2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium glycolicum | 2001 |
Chamkha, M.; Labat, M.; Patel, B. K.; Garcia, J. L. |
Isolation of a cinnamic acid-metabolizing Clostridium glycolicum strain from oil mill wastewaters and emendation of the species description. | International Journal of Systematic and Evolutionary Microbiology | 51(6), page(s): 2049—2054 | 10.1099/00207713-51-6-2049 |
| Chang2020 | butyrate, colorectal cancer | Butyricicoccus pullicaecorum | 2020 |
Chang, Shih-Chang; Shen, Ming-Hung; Liu, Chih-Yi; Pu, Chi-Ming; Hu, Je-Ming; Huang, Chi-Jung |
A gut butyrate-producing bacterium Butyricicoccus pullicaecorum regulates short-chain fatty acid transporter and receptor to reduce the progression of 1,2-dimethylhydrazine-associated colorectal cancer. | Oncology Letters | 20(6), | 10.3892/ol.2020.12190 |
| Charfreitag1988 | summary | Arachnia propionica | 1988 |
Charfreitag, O.; Collins, M. D.; Stackebrandt, E. |
Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. | International Journal of Systematic Bacteriology | 38(4), page(s): 354—357 | 10.1099/00207713-38-4-354 |
| Chassard2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides xylanisolvens | 2008 |
Chassard, C.; Delmas, E.; Lawson, P. A.; Bernalier-Donadille, A. |
Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 58(4), page(s): 1008—1013 | 10.1099/ijs.0.65504-0 |
| Chaudhary2017 | summary, general characteristics, enzymes, metabolites, utilisation | Noviherbaspirillum agri, Noviherbaspirillum massiliense | 2017 |
Chaudhary, Dhiraj Kumar; Kim, Jaisoo |
Noviherbaspirillum agri sp. nov., isolated from reclaimed grassland soil, and reclassification of Herbaspirillum massiliense (Lagier et al., 2014) as Noviherbaspirillum massiliense comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1508—1515 | 10.1099/ijsem.0.001747 |
| Chelius2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Dyadobacter fermentans | 2000 |
Chelius, M. K.; Triplett, E. W. |
Dyadobacter fermentans gen. nov., sp. nov., a novel gram-negative bacterium isolated from surface-sterilized Zea mays stems. | International Journal of Systematic and Evolutionary Microbiology | 50(2), page(s): 751—758 | 10.1099/00207713-50-2-751 |
| Chen2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Acetanaerobacterium elongatum | 2004 |
Chen, Shuangya; Dong, Xiuzhu |
Acetanaerobacterium elongatum gen. nov., sp. nov., from paper mill waste water. | International Journal of Systematic and Evolutionary Microbiology | 54(6), page(s): 2257—2262 | 10.1099/ijs.0.63212-0 |
| Chen2013 | summary, general characteristics, acid from carbohydrates, food contamination | Enterococcus saccharolyticus subsp. taiwanensis, Enterococcus saccharolyticus subsp. saccharolyticus | 2013 |
Chen, Yi-sheng; Lin, Yu-hsuan; Pan, Shwu-fen; Ji, Si-hua; Chang, Yu-chung; Yu, Chi-rong; Liou, Min-shiuan; Wu, Hui-chung; Otoguro, Misa; Yanagida, Fujitoshi; Liao, Chen-chung; Chiu, Chi-ming; Huang, Bi-qiang |
Enterococcus saccharolyticus subsp. taiwanensis subsp. nov., isolated from broccoli. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/12), page(s): 4691—4697 | 10.1099/ijs.0.052761-0 |
| Chesneau1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, food source | Staphylococcus pasteuri | 1993 |
Chesneau, O.; Morvan, A.; Grimont, F.; Labischinski, H.; Solh, N. El |
Staphylococcus pasteuri sp. nov., Isolated from Human, Animal, and Food Specimens. | International Journal of Systematic Bacteriology | 43(2), page(s): 237—244 | 10.1099/00207713-43-2-237 |
| Choi2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium faecale | 2014 |
Choi, Jung-Hye; Lee, Kyung Min; Lee, Myung-Ki; Cha, Chang-Jun; Kim, Geun-Bae |
Bifidobacterium faecale sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/9), page(s): 3134—3139 | 10.1099/ijs.0.063479-0 |
| Choi2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Anaerotignum faecicola | 2019 |
Choi, Seung-Hyeon; Kim, Ji-Sun; Park, Jam-Eon; Lee, Keun Chul; Eom, Mi Kyung; Oh, Byeong Seob; Yu, Seung Yeob; Kang, Se Won; Han, Kook-Il; Suh, Min Kuk; Lee, Dong Ho; Yoon, Hyuk; Kim, Byung-Yong; Lee, Je Hee; Lee, Ju Huck; Lee, Jung-Sook; Park, Seung-Hwan |
Anaerotignum faecicola sp. nov., isolated from human faeces. | Journal of Microbiology | 57(12), page(s): 1073—1078 | 10.1007/s12275-019-9268-3 |
| Christensen2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Granulicatella adiacens, Granulicatella elegans, Abiotrophia defectiva | 2001 |
Christensen, Jens Jørgen; Facklam, Richard R. |
Granulicatella and Abiotrophia Species from Human Clinical Specimens. | Journal of Clinical Microbiology | 39(10), page(s): 3520—3523 | 10.1128/jcm.39.10.3520-3523.2001 |
| Christensen2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Necropsobacter rosorum | 2011 |
Christensen, H.; Korczak, B. M.; Bojesen, A. M.; Kuhnert, P.; Frederiksen, W.; Bisgaard, M. |
Classification of organisms previously reported as the SP and Stewart-Letscher groups, with descriptions of Necropsobacter gen. nov. and of Necropsobacter rosorum sp. nov. for organisms of the SP group. | International Journal of Systematic and Evolutionary Microbiology | 61(8), page(s): 1829—1836 | 10.1099/ijs.0.024174-0 |
| Chassard2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Ruminococcus champanellensis | 2012 |
Christophe Chassard; Eve Delmas; Céline Robert; Lawson, Paul A.; Bernalier-Donadille, Annick |
Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota. | International Journal of Systematic and Evolutionary Microbiology | 62(1), page(s): 138—143 | 10.1099/ijs.0.027375-0 |
| Chun2001 | taxonomy | Pseudomonas putida, Arthrobacter siderocapsulatus | 2001 |
Chun, J.; Rhee, M. S.; Han, J. I.; Bae, K. S. |
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL. | International Journal of Systematic and Evolutionary Microbiology | 51(1), page(s): 169—170 | 10.1099/00207713-51-1-169 |
| Cimmino2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Actinomyces polynesiensis | 2016 |
Cimmino, T.; Metidji, S.; Labas, N.; Page, S. Le; Musso, D.; Raoult, D.; Rolain, J.-M. |
Genome sequence and description of Actinomyces polynesiensis str. MS2 sp. nov. isolated from the human gut. | New Microbes and New Infections | 12, page(s): 1—5 | 10.1016/j.nmni.2016.02.014 |
| Clavel2007 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Clostridium saccharogumia, Lactonifactor longoviformis | 2007 |
Clavel, Thomas; Lippman, Ramona; Gavini, Françoise; Doré, Joël; Blaut, Michael |
Clostridium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside. | Systematic and Applied Microbiology | 30(1), page(s): 16—26 | 10.1016/j.syapm.2006.02.003 |
| Cleenwerck2003 | summary, general characteristics | Aquaspirillum dispar, Microvirgula aerodenitrificans | 2003 |
Cleenwerck, I.; Wachter, M. De; Hoste, B.; Janssens, D.; Swings, J. |
Aquaspirillum dispar Hylemon et al. 1973 and Microvirgula aerodenitrificans Patureau et al. 1998 are subjective synonyms. | International Journal of Systematic and Evolutionary Microbiology | 53(5), page(s): 1457—1459 | 10.1099/ijs.0.02675-0 |
| Clermont2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Citrobacter pasteurii | 2015 |
Clermont, Dominique; Motreff, Laurence; Passet, Virginie; Fernandez, José-Carlos; Bizet, Chantal; Brisse, Sylvain |
Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/5), page(s): 1486—1490 | 10.1099/ijs.0.000122 |
| Clermont2015a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Paenibacillus faecis | 2015 |
Clermont, Dominique; Gomard, Maïté; Hamon, Sylviane; Bonne, Isabelle; Fernandez, José-Carlos; Wheeler, Richard; Malosse, Christian; Chamot-Rooke, Julia; Gribaldo, Simonetta; Boneca, Ivo Gomperts; Bizet, Chantal |
Paenibacillus faecis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/12), page(s): 4621—4626 | 10.1099/ijsem.0.000622 |
| Coburn2013 | antibiotic, antimicrobial, clinical sources | HACEK, Aggregatibacter aphrophilus, Eikenella corrodens, Haemophilus parainfluenzae | 2013 |
Coburn, Bryan; Toye, Baldwin; Rawte, Prasad; Jamieson, Frances B.; Farrell, David J.; Patel, Samir N. |
Antimicrobial Susceptibilities of Clinical Isolates of HACEK Organisms. | Antimicrobial Agents and Chemotherapy | 57(4), page(s): 1989—1991 | 10.1128/aac.00111-13 |
| Coenye2003 | summary, general characteristics, clinical sources | Achromobacter denitrificans | 2003 |
Tom Coenye, Marc Vancanneyt, Margo C. Cnockaert, Enevold Falsen, Jean Swings, and Peter Vandamme |
Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Ruger and Tan 1983 as Achromobacter denitrificans comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(6), page(s): 1825—1831 | 10.1099/ijs.0.02609-0 |
| Collins1980 | summary, general characteristics, enzymes, metabolites | Brevibacterium iodinum, Brevibacterium linens | 1980 |
Collins, M. D.; Jones, D.; Keddie, R. M.; Sneath, P. H. A. |
Reclassification of Chromobacterium iodinum (Davis) in a Redefined Genus Brevibacterium (Breed) as Brevibacterium iodinum nom.rev.: comb.nov. | Microbiology | 120(1), page(s): 1—10 | 10.1099/00221287-120-1-1 |
| Collins1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Arcanobacterium haemolyticum | 1982 |
Collins, M. D.; Jones, D.; Schofield, G. M. |
Reclassification of 'Corynebacterium haemolyticum' (MacLean, Liebow \& Rosenberg) in the Genus Arcanobacterium gen. nov. as Arcanobacterium haemolyticum nom .rev., comb.nov. | Microbiology | 128(6), page(s): 1279—1281 | 10.1099/00221287-128-6-1279 |
| Collins1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus garvieae, Streptococcus plantarum | 1983 |
Collins, M. D.; Farrow, J. A. E.; Phillips, B. A.; Kandler, O. |
Streptococcus garvieae sp. nov. and Streptococcus plantarum sp. nov. | Journal of General Microbiology | 129(11), page(s): 3427—3431 | 10.1099/00221287-129-11-3427 |
| Collins1983a | summary, general characteristics, enzymes, metabolites | Brevibacterium casei, Brevibacterium epidermidis | 1983 |
Collins, M. D.; Farrow, J. A. E.; Goodfellow, M.; Minnikin, D. E. |
Brevibacterium casei sp. nov. and Brevibacterium epidermidis sp. nov. | Systematic and Applied Microbiology | 4(3), page(s): 388—395 | 10.1016/s0723-2020(83)80023-x |
| Collins1983b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Curtobacterium flaccumfaciens | 1983 |
Collins, M. D.; Jones, D. |
Reclassification of Corynebacterium flaccumfaciens, Corynebacterium betae, Corynebacterium oortii and Corynebacterium poinsettiae in the genus Curtobacterium, as Curtobacterium flaccumfaciens comb. nov. | Microbiology | 129(11), page(s): 3545—3548 | 10.1099/00221287-129-11-3545 |
| Collins1983c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Exiguobacterium aurantiacum | 1983 |
Collins, M. D.; Lund, B. M.; Farrow, J. A. E.; Schleifer, K. H. |
Chemotaxonomic Study of an Alkalophilic Bacterium, Exiguobacterium aurantiacum gen. nov., sp. nov. | Microbiology | 129(7), page(s): 2037—2042 | 10.1099/00221287-129-7-2037 |
| Collins1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus avium, Enterococcus casseliflavus, Enterococcus gallinarum, Enterococcus malodoratus, Enterococcus durans | 1984 |
Collins, M. D.; Jones, D.; Farrow, J. A. E.; Kilpper-Bälz, R.; Schleifer, K. H. |
Enterococcus avium nom. rev., comb. nov.: E. casseliflavus nom. rev., comb. nov.: E. durans nom. rev., comb. nov.: E. gallinarum comb. nov.: and E. malodoratus sp. nov. | International Journal of Systematic Bacteriology | 34(2), page(s): 220—223 | 10.1099/00207713-34-2-220 |
| Collins1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus mundtii | 1986 |
Collins, M. D.; Farrow, J. A. E.; Jones, D. |
Enterococcus mundtii sp. nov. | International Journal of Systematic Bacteriology | 36(1), page(s): 8—12 | 10.1099/00207713-36-1-8 |
| Collins1986a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Tissierella praeacuta | 1986 |
Collins, M. D.; H. N., Shah |
Notes: Reclassification of Bacteroides praeacutus Tissier (Holdeman and Moore) in a New Genus, Tissierella, as Tissierella praeacuta comb. nov. | International Journal of Systematic Bacteriology | 36(3), page(s): 461—463 | 10.1099/00207713-36-3-461 |
| Collins1987 | summary, general characteristics, enzymes, metabolites | Corynebacterium ammoniagenes | 1987 |
Collins, M. D. |
Transfer of Brevibacterium ammoniagenes (Cooke and Keith) to the Genus Corynebacterium as Corynebacterium ammoniagenes comb. nov. | International Journal of Systematic Bacteriology | 37(4), page(s): 442—443 | 10.1099/00207713-37-4-442 |
| Collins1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, skin | Corynebacterium amycolatum | 1988 |
Collins, Matthew D.; Burton, Ruth A.; Jones, Dorothy |
Corynebacterium amycolatum sp. nov. a new mycolic acid-less Corynebacterium species from human skin. | FEMS Microbiology Letters | 49(3), page(s): 349—352 | 10.1111/j.1574-6968.1988.tb02755.x |
| Collins1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus casei, Lactobacillus paracasei subsp. paracasei, Lactobacillus paracasei subsp. tolerans, Lactobacillus rhamnosus | 1989 |
Collins, M. D.; Phillips, B. A.; Zanoni, P. |
Deoxyribonucleic Acid Homology Studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov. | International Journal of Systematic Bacteriology | 39(2), page(s): 105—108 | 10.1099/00207713-39-2-105 |
| Collins1989a | summary, general characteristics, acid from carbohydrates, metabolites | Enterococcus raffinosus, Enterococcus solitarius, Enterococcus pseudoavium | 1989 |
Collins, Matthew D.; Facklam, Richard R.; Farrow, John A. E.; Williamson, Russell |
Enterococcus raffinosus sp. nov., Enterococcus solitarius sp. nov. and Enterococcus pseudoavium sp. nov. | FEMS Microbiology Letters | 57(3), page(s): 283—288 | 10.1111/j.1574-6968.1989.tb03350.x |
| Collins1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus dispar | 1991 |
Collins, M. D.; Rodrigues, U. M.; Pigott, N. E.; Facklam, R. R. |
Enterococcus dispar sp. nov. a new Enterococcus species from human sources. | Letters in Applied Microbiology | 12(3), page(s): 95—98 | 10.1111/j.1472-765x.1991.tb00514.x |
| Collins1993 | taxonomy | Aeromonas trota, Aeromonas enteropelogenes, Aeromonas ichthiosmia | 1993 |
Collins, M. D.; Martinez-Murcia, A. J.; J., Cai |
Aeromonas enteropelogenes and Aeromonas ichthiosmia Are Identical to Aeromonas trota and Aeromonas veronii, Respectively, as Revealed by Small-Subunit rRNA Sequence Analysis. | International Journal of Systematic Bacteriology | 43(4), page(s): 595—603 | 10.1111/j.1365-2672.1993.tb01600.x |
| Collins1993a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Weissella paramesenteroides, Weissella confusa, Weissella viridescens | 1993 |
Collins, M. D.; Samelis, J.; Metaxopoulos, J.; Wallbanks, S. |
Taxonomic studies on some leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species. | Journal of Applied Bacteriology | 75(6), page(s): 855—856 | 10.1099/00207713-43-4-855 |
| Collins1994 | taxonomy | Clostridium, Thermoanaerobacterium thermosaccharolyticum | 1994 |
Collins, M. D.; Lawson, P. A.; Willems, A.; Cordoba, J. J.; Fernandez-Garayzabal, J.; Garcia, P.; J., Cai; Hippe, H.; Farrow, J. A. E. |
The Phylogeny of the Genus Clostridium: Proposal of Five New Genera and Eleven New Species Combinations. | International Journal of Systematic Bacteriology | 44(4), page(s): 812—826 | 10.1099/00207713-44-4-812 |
| Collins1994a | general characteristics, enzymes | Porphyromonas cangingivalis, Porphyromonas cansulci, Porphyromonas asaccharolytica, Porphyromonas endodontalis, Porphyromonas gingivalis | 1994 |
Collins, M. D.; Love, D. N.; Karjalainen, J.; Kanervo, A.; Forsblom, B.; Willems, A.; Stubbs, S.; Sarkiala, E.; Bailey, G. D.; Wigney, D. I.; Jousimies-Somer, H. |
Phylogenetic Analysis of Members of the Genus Porphyromonas and Description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov. | International Journal of Systematic Bacteriology | 44(4), page(s): 674—679 | 10.1099/00207713-44-4-674 |
| Collins1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Corynebacterium kroppenstedtii | 1998 |
Collins, Matthew D.; Hutson, Roger A.; Falsen, Enevold; SjoÌden, Berit; Facklam, Richard R. |
Description of Gemella sanguinis sp. nov., Isolated from Human Clinical Specimens. | Journal of Clinical Microbiology | 36(10), page(s): 1449—1454 | 10.1128/jcm.36.10.3090-3093.1998 |
| Collins1998a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Gemella sanguinis | 1998 |
Collins, M. D.; Falsen, E.; Akervall, E.; Sjoden, B.; Alvarez, A. |
Note: Corynebacterium kroppenstedtii sp. nov., a novel corynebacterium that does not contain mycolic acids. | International Journal of Systematic Bacteriology | 48(4), page(s): 3090—3093 | 10.1099/00207713-48-4-1449 |
| Collins1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Corynebacterium sundsvallense | 1999 |
Collins, Matthew D.; Bernard, Kathryn A.; Hutson, Roger A.; Sjödén, Berit; Nyberg, Anders; Falsen, Enevold |
Corynebacterium sundsvallense sp. nov., from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 361—366 | 10.1099/00207713-49-2-361 |
| Collins1999a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Facklamia tabacinasalis | 1999 |
Collins, Matthew D.; Hutson, Roger A.; Falsen, Enevold; Sjöden, Berit |
Facklamia tabacinasalis sp. nov., from powdered tobacco. | International Journal of Systematic and Evolutionary Microbiology | 49(3), page(s): 1247—1250 | 10.1099/00207713-49-3-1247 |
| Collins2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Granulicatella adiacens, Granulicatella elegans, Granulicatella balaenopterae | 2000 |
Collins, M. D.; Lawson, P. A. |
The genus Abiotrophia (Kawamura et al.) is not monophyletic: proposal of Granulicatella gen. nov., Granulicatella adiacens comb. nov., Granulicatella elegans comb. nov. and Granulicatella balaenopterae comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(1), page(s): 365—369 | 10.1099/00207713-50-1-365 |
| Collins2000a | summary, general characteristics | Rothia nasimurium, Rothia mucilaginosa | 2000 |
Collins, M. D.; Hutson, R. A.; Båverud, V.; Falsen, E. |
Characterization of a Rothia-like organism from a mouse: description of Rothia nasimurium sp. nov. and reclassification of Stomatococcus mucilaginosus as Rothia mucilaginosa comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(3), page(s): 1247—1251 | 10.1099/00207713-50-3-1247 |
| Combetblanc1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus thermoamylovorans | 1995 |
Combet-Blanc, Y.; Ollivier, B.; Streicher, C.; Patel, B. K. C.; Dwivedi, P. P.; B., P. O. T.; Prensier, G.; Garcia, J.-L. |
Bacillus thermoamylovorans sp. nov., a Moderately Thermophilic and Amylolytic Bacterium. | International Journal of Systematic Bacteriology | 45(1), page(s): 9—16 | 10.1099/00207713-45-1-9 |
| Cook2007 | summary, general characteristics, enzymes, utilisation | Howardella ureilytica | 2007 |
Cook, Anthony R.; Riley, Paul W.; Murdoch, Heather; Evans, Paul N.; McDonald, Ian R. |
Howardella ureilytica gen. nov., sp. nov., a Gram-positive, coccoid-shaped bacterium from a sheep rumen. | International Journal of Systematic and Evolutionary Microbiology | 57(12), page(s): 2940—2945 | 10.1099/ijs.0.64819-0 |
| Cooksey2004 | summary, general characteristics, antibiotics, utilisation | Mycobacterium cosmeticum | 2004 |
Cooksey, Robert C.; de Waard, Jacobus H.; Yakrus, Mitchell A.; Rivera, Ismar; Chopite, Marina; Toney, Sean R.; Morlock, Glenn P.; Butler, W. Ray |
Mycobacterium cosmeticum sp. nov., a novel rapidly growing species isolated from a cosmetic infection and from a nail salon. | International Journal of Systematic and Evolutionary Microbiology | 54(6), page(s): 2385—2391 | 10.1099/ijs.0.63238-0 |
| Coonrod1971 | antibiotic, antimicrobial | Bacillus subtilis | 1971 |
Coonrod, J. Donald; Leadley, P. J.; Eickhoff, T. C. |
Antibiotic Susceptibility of Bacillus Species. | Journal of Infectious Diseases | 123(1), page(s): 102—105 | 10.1093/infdis/123.1.102 |
| Cornick1994 | summary, general characteristics, enzymes, metabolites, utilisation | Lachnospira pectinoschiza | 1994 |
Cornick, N. A.; Jensen, N. S.; Stahl, D. A.; Hartman, P. A.; Allison, M. J. |
Lachnospira pectinoschiza sp. nov., an Anaerobic Pectinophile from the Pig Intestine. | International Journal of Systematic Bacteriology | 44(1), page(s): 87—93 | 10.1099/00207713-44-1-87 |
| Cotta2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Robinsoniella peoriensis | 2009 |
Cotta, M. A.; Whitehead, T. R.; Falsen, E.; Moore, E.; Lawson, P. A. |
Robinsoniella peoriensis gen. nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source. | International Journal of Systematic and Evolutionary Microbiology | 59(1), page(s): 150—155 | 10.1099/ijs.0.65676-0 |
| Coykendall1987 | summary, general characteristics, acid from carbohydrates, metabolites | Streptococcus anginosus, Streptococcus milleri, Streptococcus constellatus, Streptococcus intermedius | 1987 |
Coykendall, A. L.; Wesbecher, P. M.; Gustafson, K. B. |
'Streptococcus milleri' Streptococcus constellatus, and Streptococcus intermedius Are Later Synonyms of Streptococcus anginosus. | International Journal of Systematic Bacteriology | 37(3), page(s): 222—228 | 10.1099/00207713-37-3-222 |
| Coyle1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Corynebacterium striatum | 1993 |
Coyle, M. B.; Leonard, R. B.; Nowowiejski, D. J. |
Pursuit of the Corynebacterium striatum Type Strain. | International Journal of Systematic Bacteriology | 43(4), page(s): 848—851 | 10.1099/00207713-43-4-848 |
| Crociani1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Bifidobacterium inopinatum, Bifidobacterium denticolens | 1996 |
Crociani, F.; Biavati, B.; Alessandrini, A.; Chiarini, C.; Scardovi, V. |
Bifidobacterium inopinatum sp. nov. and Bifidobacterium denticolens sp. nov., Two New Species Isolated from Human Dental Caries. | International Journal of Systematic Bacteriology | 46(2), page(s): 564—571 | 10.1099/00207713-46-2-564 |
| Cunningham2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Yersinia kristensenii subsp. rochesterensis | 2019 |
Cunningham, Scott A.; Jeraldo, Patricio; Patel, Robin |
Yersinia kristensenii subsp. rochesterensis subsp. nov., isolated from human feces. | International Journal of Systematic and Evolutionary Microbiology | 69(8), page(s): 2292—2298 | 10.1099/ijsem.0.003464 |
| Curk1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus paraplantarum | 1996 |
Curk, M.-C.; Hubert, J.-C.; Bringel, F. |
Lactobacillus paraplantarum sp. nov., a New Species Related to Lactobacillus plantarum. | International Journal of Systematic Bacteriology | 46(2), page(s): 595—598 | 10.1099/00207713-46-2-595 |
| Cutri1984 | summary, general characteristics, enzymes | Pseudomonas tolaasii, Pseudomonas gingeri | 1984 |
Cutri, S. S.; Macauley, B. J.; Roberts, W. P. |
Characteristics of pathogenic non-fluorescent (smooth) and non-pathogenic fluorescent (rough) forms of Pseudomonas tolaasii and Pseudomonas gingeri. | Journal of Applied Bacteriology | 57(2), page(s): 291—298 | 10.1111/j.1365-2672.1984.tb01393.x |
| Cwyk1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Treponema succinifaciens | 1979 |
Cwyk, W. M.; Canale-Parola, E. |
Treponema succinifaciens sp. nov., an anaerobic spirochete from the swine intestine. | Archives of Microbiology | 122(3), page(s): 231—239 | 10.1007/bf00411285 |
| Dai2005 | summary, general characteristics, enzymes, acid from carbohydrates | Planomicrobium chinense, Planomicrobium psychrophilum, Planomicrobium alkanoclasticum | 2005 |
Dai, Xin; Wang, Ya-Nan; Wang, Bao-Jun; Liu, Shuang-Jiang; Zhou, Yu-Guang |
Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 699—702 | 10.1099/ijs.0.63340-0 |
| Daillere2016 | health | Barnesiella intestinihominis, Enterococcus hirae | 2016 |
Daillere, Romain; Vétizou, Marie; Waldschmitt, Nadine; Yamazaki, Takahiro; Isnard, Christophe; Poirier-Colame, Vichnou; Duong, Connie P. M.; Flament, Caroline; Lepage, Patricia; Roberti, Maria Paula; Routy, Bertrand; Jacquelot, Nicolas; Apetoh, Lionel; Becharef, Sonia; Rusakiewicz, Sylvie; Langella, Philippe; Sokol, Harry; Kroemer, Guido; Enot, David; Roux, Antoine; Eggermont, Alexander; Tartour, Eric; Johannes, Ludger; Woerther, Paul-Louis; Chachaty, Elisabeth; Soria, Jean-Charles; Golden, Encouse; Formenti, Silvia; Plebanski, Magdalena; Madondo, Mutsa; Rosenstiel, Philip; Raoult, Didier; Cattoir, Vincent; Boneca, Ivo Gomperts; Chamaillard, Mathias; Zitvogel, Laurence |
Enterococcus hirae and Barnesiella intestinihominis Facilitate Cyclophosphamide-Induced Therapeutic Immunomodulatory Effects. | Immunity | 45(4), page(s): 931—943 | 10.1016/j.immuni.2016.09.009 |
| Daneshvar2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paracoccus yeeii | 2003 |
Daneshvar, Maryam I.; Hollis, Dannie G.; Weyant, Robbin S.; Steigerwalt, Arnold G.; Whitney, Anne M.; Douglas, Michael P.; Macgregor, John P.; Jordan, Jean G.; Mayer, Leonard W.; Rassouli, Shadi M.; Barchet, Winfred; Munro, Cindy; Shuttleworth, L.; Bernard, Kathryn |
Paracoccus yeeii sp. nov. (Formerly CDC Group EO-2), a Novel Bacterial Species Associated with Human Infection. | Journal of Clinical Microbiology | 41(3), page(s): 1289—1294 | 10.1128/jcm.41.3.1289-1294.2003 |
| Daneshvar2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Rothia dentocariosa, Corynebacterium aurimucosum | 2004 |
Daneshvar, Maryam I.; Hollis, Dannie G.; Weyant, Robbin S.; Jordan, Jean G.; MacGregor, John P.; Morey, Roger E.; Whitney, Anne M.; Brenner, Don J.; Steigerwalt, Arnold G.; Helsel, Leta O.; Raney, Patti M.; Patel, Jean B.; Levett, Paul N.; Brown, June M. |
Identification of Some Charcoal-Black-Pigmented CDC Fermentative Coryneform Group 4 Isolates as Rothia dentocariosa and Some as Corynebacterium aurimucosum : Proposal of Rothia dentocariosa emend. Georg and Brown 1967, Corynebacterium aurimucosum emend. Yassin et al. 2002, and Corynebacterium nigricans Shukla et al. 2003 pro synon. Corynebacterium aurimucosum. | Journal of Clinical Microbiology | 42(9), page(s): 4189—4198 | 10.1128/jcm.42.9.4189-4198.2004 |
| Danylec2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rubneribacter badeniensis, Enteroscipio rubneri | 2018 |
Danylec, Nicolas; Göbl, Andrea; Stoll, Dominic A.; Hetzer, Birgit; Kulling, Sabine E.; Huch, Melanie |
Rubneribacter badeniensis gen. nov., sp. nov. and Enteroscipio rubneri gen. nov., sp. nov., new members of the Eggerthellaceae isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(5), page(s): 1533—1540 | 10.1099/ijsem.0.002705 |
| Danylec2019 | summary | Adlercreutzia muris, Ellagibacter isourolithinifaciens | 2019 |
Danylec, Nicolas; Stoll, Dominic A.; Huch, Melanie |
Draft Genome Sequences of Type Strains of Adlercreutzia muris and Ellagibacter urolithinifaciens , Belonging to the Family Eggerthellaceae. | Microbiology Resource Announcements | 8(47), | 10.1128/mra.01306-19 |
| Danylec2019a | taxonomy | Gordonibacter isourolithinfaciens, Gordonibacter faecihominis | 2019 |
Danylec, Nicolas; Stoll, Dominic A.; Huch, Melanie |
Gordonibacter faecihominis is a later heterotypic synonym of Gordonibacter urolithinfaciens. | International Journal of Systematic and Evolutionary Microbiology | 69(8), page(s): 2527—2532 | 10.1099/ijsem.0.003537 |
| Davis1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Anaerobiospirillum succiniciproducens | 1976 |
Davis, C. P.; Cleven, D.; Brown, J.; Balish, E. |
Anaerobiospirillum, a New Genus of Spiral-Shaped Bacteria. | International Journal of Systematic Bacteriology | 26(4), page(s): 498—504 | 10.1099/00207713-26-4-498 |
| Davis1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Vibrio mimicus | 1981 |
Davis, B. R.; Fanning, G. R.; Madden, J. M.; Steigerwalt, A. G.; Bradford, H. B.; Smith, H. L.; Brenner, D. J. |
Characterization of biochemically atypical Vibrio cholerae strains and designation of a new pathogenic species, Vibrio mimicus. | Journal of Clinical Microbiology | 14, page(s): 631—639 | 10.1128/jcm.14.6.631-639.1981 |
| Debruyne2009 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, food source | Campylobacter peloridis, Campylobacter lari subsp. concheus, Campylobacter lari subsp. lari | 2009 |
Debruyne, L.; On, S. L. W.; Brandt, E. De; Vandamme, P. |
Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(5), page(s): 1126—1132 | 10.1099/ijs.0.000851-0 |
| Defnoun2000 | summary, general characteristics, utilisation, fermented foods | Papillibacter cinnamivorans | 2000 |
Defnoun, S.; Labat, M.; Ambrosio, M.; Garcia, J. L.; Patel, B. K. |
Papillibacter cinnamivorans gen. nov., sp. nov., a cinnamate-transforming bacterium from a shea cake digester. | International Journal of Systematic and Evolutionary Microbiology | 50(3), page(s): 1221—1228 | 10.1099/00207713-50-3-1221 |
| Dekio2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Cutibacterium acnes subsp. acnes, Cutibacterium acnes subsp. elongatum, Propionibacterium freudenreichii | 2015 |
Dekio, Itaru; Culak, Renata; Misra, Raju; Gaulton, Tom; Fang, Min; Sakamoto, Mitsuo; Ohkuma, Moriya; Oshima, Kenshiro; Hattori, Masahira; Klenk, Hans-Peter; Rajendram, Dunstan; Gharbia, Saheer E.; Shah, Haroun N. |
Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/12), page(s): 4776—4787 | 10.1099/ijsem.0.000648 |
| Dekio2020 | summary | Cutibacterium modestum, Cutibacterium granulosum, Cutibacterium namnetense | 2020 |
Dekio, Itaru; Sakamoto, Mitsuo; Suzuki, Tomo; Yuki, Masahiro; Kinoshita, Shigeru; Murakami, Yoshiyuki; Ohkuma, Moriya |
Cutibacterium modestum sp. nov., isolated from meibum of human meibomian glands, and emended descriptions of Cutibacterium granulosum and Cutibacterium namnetense. | International Journal of Systematic and Evolutionary Microbiology | 70(4), page(s): 2457—2462 | 10.1099/ijsem.0.004058 |
| Dekker2016 | antibiotics | Streptococcus alactolyticus, Streptococcus equinus, Streptococcus gallolyticus subsp. gallolyticus, Streptococcus dysgalactiae | 2016 |
Dekker, John P.; Lau, Anna F. |
An Update on the Streptococcus bovis Group: Classification, Identification, and Disease Associations. | Journal of Clinical Microbiology | 54(7), page(s): 1694—1699 | 10.1128/jcm.02977-15 |
| Dellaglio2004 | summary, general characteristics, acid from carbohydrates | Lactobacillus fermentum, Lactobacillus cellobiosus | 2004 |
Dellaglio, Franco; Torriani, Sandra; Felis, Giovanna E. |
Reclassification of Lactobacillus cellobiosus Rogosa et al. 1953 as a later synonym of Lactobacillus fermentum Beijerinck 1901. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 809—812 | 10.1099/ijs.0.02947-0 |
| Demarta2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Aeromonas tecta | 2008 |
Demarta, Antonella; Küpfer, Mara; Riegel, Philippe; Harf-Monteil, Colette; Tonolla, Mauro; Peduzzi, Raffaele; Monera, Arturo; Saavedra, Maria José; Martínez-Murcia, Antonio |
Aeromonas tecta sp. nov., isolated from clinical and environmental sources. | Systematic and Applied Microbiology | 31(4), page(s): 278—286 | 10.1016/j.syapm.2008.04.005 |
| Dent1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus animalis | 1982 |
Dent, V. E.; Williams, R. A. D. |
Lactobacillus animalis sp. nov., a new species of lactobacillus from the alimentary canal of animals. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene | 3(3), page(s): 377—386 | 10.1016/s0721-9571(82)80018-5 |
| Deptula2019 | general characteristics | Acidipropionibacterium jensenii | 2019 |
Deptula, Paulina; Loivamaa, Iida; Smolander, Olli-Pekka; Laine, Pia; Roberts, Richard J.; Piironen, Vieno; Paulin, Lars; Savijoki, Kirsi; Auvinen, Petri; Varmanen, Pekka |
Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster. | Microorganisms | 7(11), page(s): 512 | 10.3390/microorganisms7110512 |
| Derrien2004 | summary, general characteristics, utilisation, metabolites | Akkermansia muciniphila | 2004 |
Derrien, Muriel; Vaughan, Elaine E.; Plugge, Caroline M.; de Vos, Willem M. |
Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. | International Journal of Systematic and Evolutionary Microbiology | 54(5), page(s): 1469—1476 | 10.1099/ijs.0.02873-0 |
| DeVos1985 | summary, general characteristics, enzymes, metabolites, utilisation | Comamonas davis, Comamonas terrigena | 1985 |
P. De Vos; Kersters, K.; Falsen, E.; B., P. O. T.; Gillis, M.; Segers, P.; J. De, L. E. Y. |
Comamonas Davis and Park 1962 gen. nov., nom. rev. emend., and Comamonas terrigena Hugh 1962 sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 35(4), page(s): 443—453 | 10.1099/00207713-35-4-443 |
| Devriese1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Streptococcus cecorum | 1983 |
Devriese, L. A.; Dutta, G. N.; Farrow, J. A. E.; Van de Kerckhove, A.; Phillips, B. A. |
Streptococcus cecorum, a New Species Isolated from Chickens. | International Journal of Systematic Bacteriology | 33(4), page(s): 772—776 | 10.1099/00207713-33-4-772 |
| Devriese1983a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus gallinarum, Staphylococcus caprae | 1983 |
Devriese, L. A.; Poutrel, B.; Kilpper-Bälz, R.; Schleifer, K. H. |
Staphylococcus gallinarum and Staphylococcus caprae, Two New Species from Animals. | International Journal of Systematic Bacteriology | 33(3), page(s): 480—486 | 10.1099/00207713-33-3-480 |
| Devriese1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus hyovaginalis, Streptococcus thoraltensis | 1997 |
Devriese, L. A.; Pot, B.; Vandamme, P.; Kersters, K.; Collins, M. D.; Alvarez, N.; Haesebrouck, F.; Hommez, J. |
Streptococcus hyovaginalis sp. nov. and Streptococcus thoraltensis sp. nov., from the Genital Tract of Sows. | International Journal of Systematic Bacteriology | 47(4), page(s): 1073—1077 | 10.1099/00207713-47-4-1073 |
| Dewhirst1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, oral cavity | Kingella oralis, Neisseria elongata, Eikenella corrodens | 1993 |
Dewhirst, F. E.; Chen, C.-K. C.; Paster, B. J.; Zambon, J. J. |
Phylogeny of Species in the Family Neisseriaceae Isolated from Human Dental Plaque and Description of Kingella orale sp. nov. | International Journal of Systematic Bacteriology | 43(3), page(s): 490—499 | 10.1099/00207713-43-3-490 |
| Dewhirst2001 | summary, general characteristics, enzymes, acid from carbohydrates, oral cavity | Olsenella uli, Olsenella profusa | 2001 |
Dewhirst, F. E.; Paster, B. J.; Tzellas, N.; Coleman, B.; Downes, J.; Spratt, D. A.; Wade, W. G. |
Characterization of novel human oral isolates and cloned 16S rDNA sequences that fall in the family Coriobacteriaceae: description of olsenella gen. nov., reclassification of Lactobacillus uli as Olsenella uli comb. nov. and description of Olsenella profusa sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(5), page(s): 1797—1804 | 10.1099/00207713-51-5-1797 |
| Diamanti2020 | health, rheumatoid arthritis, gut microbiome, compilation | compilation | 2020 |
Diamanti, Andrea Picchianti; Panebianco, Concetta; Salerno, Gerardo; Rosa, Roberta Di; Salemi, Simonetta; Sorgi, Maria Laura; Meneguzzi, Giorgia; Mariani, Maria Benedetta; Rai, Alessandra; Iacono, Dalila; Sesti, Giorgio; Pazienza, Valerio; Lagana, Bruno |
Impact of Mediterranean Diet on Disease Activity and Gut Microbiota Composition of Rheumatoid Arthritis Patients. | Microorganisms | 8(12), page(s): 1989 | 10.3390/microorganisms8121989 |
| Dicks1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, dairy foods | Leuconostoc argentinum = Leuconostoc lactis | 1993 |
Dicks, L. M. T.; Fantuzzi, L.; Gonzalez, F. C.; Toit, M. Du; Dellaglio, F. |
Leuconostoc argentinum sp. nov., Isolated from Argentine Raw Milk. | International Journal of Systematic Bacteriology | 43(2), page(s): 347—351 | 10.1099/00207713-43-2-347 |
| Dione2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaerosalibacter massiliensis | 2016 |
Dione, N.; Sankar, S. A.; Lagier, J.-C.; Khelaifia, S.; Michele, C.; Armstrong, N.; Richez, M.; Abrahao, J.; Raoult, D.; Fournier, P.-E. |
Genome sequence and description of Anaerosalibacter massiliensis sp. nov. | New Microbes and New Infections | 10, page(s): 66—76 | 10.1016/j.nmni.2016.01.002 |
| Dione2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Anaerococcus jeddahensis | 2018 |
Dione, Niokhor; Bellali, Sara; Yasir, Muhammad; Azhar, Esam I.; Bibi, Fehmida; Beye, Mamadou; Armstrong, Nicholas; Cadoret, Frédéric; Jiman-Fatani, Asif A.; Helmy, Nayel; Rathored, Jaishriram; Labas, Noémie; Fournier, Pierre-Edouard; Raoult, Didier; Lagier, Jean-Christophe |
Anaerococcus jeddahensis sp. nov., a New Bacterial Species Isolated From Healthy Nomadic Bedouin Woman From Saudi Arabia. | Current Microbiology | 75(11), page(s): 1419—1428 | 10.1007/s00284-018-1538-5 |
| Dione2018a | summary, general characteristics | Collinsella provencensis, Parabacteroides bouchesdurhonensis, Sutterella seckii | 2018 |
Dione, N.; Ngom, I. I.; Valles, C.; Cadoret, F.; Fournier, P. E.; Raoult, D.; Lagier, J. C. |
'Collinsella provencensis' sp. nov., 'Parabacteroides bouchesdurhonensis' sp. nov. and 'Sutterella seckii,' sp. nov., three new bacterial species identified from human gut microbiota. | New Microbes and New Infections | 23, page(s): 44—47 | 10.1016/j.nmni.2018.02.003 |
| Djaballah2018 | summary, general characteristics | Streptomyces massilialgeriensis, Streptomyces massiliensis | 2018 |
Djaballah, C. E.; Kitouni, M.; Raoult, D.; Khelaifia, S. |
'Streptomyces massilialgeriensis' sp. nov., a new bacterial species isolated from an extremely saline soil collected from the dry lake of Ank el Djamel in Algeria. | New Microbes and New Infections | 21, page(s): 18—19 | 10.1016/j.nmni.2017.10.003 |
| Djordjevic2000 | summary, general characteristics, acid from carbohydrates | Paenibacillus alvei, Paenibacillus lautus | 2000 |
Djordjevic, Steven P.; Forbes, Wendy A.; Smith, Lisa A.; Hornitzky, Michael A. |
Genetic and Biochemical Diversity among Isolates of Paenibacillus alvei Cultured from Australian Honeybee (Apis mellifera) Colonies. | Applied and Environmental Microbiology | 66(3), page(s): 1098—1106 | 10.1128/aem.66.3.1098-1106.2000 |
| Doi2009 | summary, general characteristics, acid from carbohydrates | Pediococcus lolii = Pediococcus acidilactici | 2009 |
Doi, K.; Nishizaki, Y.; Fujino, Y.; Ohshima, T.; Ohmomo, S.; Ogata, S. |
Pediococcus lolii sp. nov., isolated from ryegrass silage. | International Journal of Systematic and Evolutionary Microbiology | 59(5), page(s): 1007—1010 | 10.1099/ijs.0.005793-0 |
| Dolka2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Enterococcus cecorum | 2016 |
Dolka, Beata; Chrobak-Chmiel, Dorota; Makrai, László; Szeleszczuk, Piotr |
Phenotypic and genotypic characterization of Enterococcus cecorum strains associated with infections in poultry. | BMC Veterinary Research | 12(1), | 10.1186/s12917-016-0761-1 |
| Domingo2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Ruminococcus gauvreauii | 2008 |
Domingo, M.-C.; Huletsky, A.; Boissinot, M.; Bernard, K. A.; Picard, F. J.; Bergeron, M. G. |
Ruminococcus gauvreauii sp. nov., a glycopeptide-resistant species isolated from a human faecal specimen. | International Journal of Systematic and Evolutionary Microbiology | 58(6), page(s): 1393—1397 | 10.1099/ijs.0.65259-0 |
| Domingo2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Clostridium lavalense | 2009 |
Domingo, M.-C.; Huletsky, A.; Boissinot, M.; Helie, M.-C.; Bernal, A.; Bernard, K. A.; Grayson, M. L.; Picard, F. J.; Bergeron, M. G. |
Clostridium lavalense sp. nov., a glycopeptide-resistant species isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 59(3), page(s): 498—503 | 10.1099/ijs.0.001958-0 |
| Domingo2015 | summary, antibiotics, blood infection | Cloacibacillus evryensis, Cloacibacillus porcorum | 2015 |
Domingo, M.-C.; Yansouni, C.; Gaudreau, C.; Lamothe, F.; Lévesque, S.; Tremblay, C.; Garceau, R. |
Cloacibacillus sp., a Potential Human Pathogen Associated with Bacteremia in Quebec and New Brunswick. | Journal of Clinical Microbiology | 53(10), page(s): 3380—3383 | 10.1128/jcm.01137-15 |
| Donabedian2006 | antibiotics, food contamination | Enterococcus faecium | 2006 |
Donabedian, S. M.; Perri, M. B.; Vager, D.; Hershberger, E.; Malani, P.; Simjee, S.; Chow, J.; Vergis, E. N.; Muder, R. R.; Gay, K.; Angulo, F. J.; Bartlett, P.; Zervos, M. J. |
Quinupristin-Dalfopristin Resistance in Enterococcus faecium Isolates from Humans, Farm Animals, and Grocery Store Meat in the United States. | Journal of Clinical Microbiology | 44(9), page(s): 3361—3365 | 10.1128/jcm.02412-05 |
| Donder2019 | antibiotics | Butyricimonas virosa | 2019 |
Donder, Laura De; Uyttebroek, Ortwin; Cleven, Stijn Van; Berrevoet, Frederik |
A subcutaneous infection mimicking necrotizing fasciitis due to Butyricimonas virosa. | Acta Chirurgica Belgica | 120(6), page(s): 425—428 | 10.1080/00015458.2019.1631612 |
| Dong2000 | summary, general characteristics, acid from carbohydrates, metabolites | Bifidobacterium thermacidophilum | 2000 |
Dong, X.; Xin, Y.; Jian, W.; Liu, X.; Ling, D. |
Bifidobacterium thermacidophilum sp. nov., isolated from an anaerobic digester. | International Journal of Systematic and Evolutionary Microbiology | 50(1), page(s): 119—125 | 10.1099/00207713-50-1-119 |
| Dong2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Dyadobacter beijingensis | 2007 |
Dong, Zhi; Guo, Xiaoyu; Zhang, Xiaoxia; Qiu, Fubin; Sun, Lei; Gong, Huili; Zhang, Feiyun |
Dyadobacter beijingensis sp. nov., isolated from the rhizosphere of turf grasses in China. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 862—865 | 10.1099/ijs.0.64754-0 |
| Dot1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Phascolarctobacterium faecium | 1993 |
Dot, Therese Del; Osawa, Ro; Stackebrandt, Erko |
Phascolarctobacterium faecium gen. nov, spec. nov., a Novel Taxon of the Sporomusa Group of Bacteria. | Systematic and Applied Microbiology | 16(3), page(s): 380—384 | 10.1016/s0723-2020(11)80269-9 |
| Douglas1917 | wound infections | 1917 |
Douglas, S. R.; Fleming, A.; Colebrook, L. |
Studies in Wound Infections. | The Lancet | 190(4910), page(s): 530—532 | 10.1016/s0140-6736(01)52070-x | |
| Douglass2018 | taxonomy | Pichia kudriavzevii | 2018 |
Douglass, Alexander P.; Offei, Benjamin; Braun-Galleani, Stephanie; Coughlan, Aisling Y.; Martos, Alexandre A. R.; Ortiz-Merino, Raúl A.; Byrne, Kevin P.; Wolfe, Kenneth H. |
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names. | PLoS Pathogens | 14(7), page(s): e1007138 | 10.1371/journal.ppat.1007138 |
| Downes2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, oral cavity | Bulleidia extructa | 2000 |
Downes, J.; Olsvik, B.; Hiom, S. J.; Spratt, D. A.; Cheeseman, S. L.; Olsen, I.; Weightman, A. J.; Wade, W. G. |
Bulleidia extructa gen. nov., sp. nov., isolated from the oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 50(3), page(s): 979—983 | 10.1099/00207713-50-3-979 |
| Downes2003 | summary, general characteristics, metabolites, utilisation, antibiotics, oral cavity | Dialister invisus, Dialister pneumosintes | 2003 |
Downes, J., M. Munson and W. G. Wade |
Dialister invisus sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 53(6), page(s): 1937—1940 | 10.1099/ijs.0.02640-0 |
| Downes2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Peptostreptococcus stomatis | 2006 |
Downes, Julia; Wade, William G. |
Peptostreptococcus stomatis sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 56(4), page(s): 751—754 | 10.1099/ijs.0.64041-0 |
| Downes2009 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, oral cavity | Pyramidobacter piscolens | 2009 |
Downes, J.; Vartoukian, S. R.; Dewhirst, F. E.; Izard, J.; Chen, T.; Yu, W.-H.; Sutcliffe, I. C.; Wade, W. G. |
Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 59(5), page(s): 972—980 | 10.1099/ijs.0.000364-0 |
| Downes2011 | clinical sources, oral cavity | Scardovia wiggsiae, Scardovia inopinata | 2011 |
Downes, Julia; Mantzourani, Maria; Beighton, David; Hooper, Samuel; Wilson, Melanie J.; Nicholson, Ainsley; Wade, William G. |
Scardovia wiggsiae sp. nov., isolated from the human oral cavity and clinical material, and emended descriptions of the genus Scardovia and Scardovia inopinata. | International Journal of Systematic and Evolutionary Microbiology | 61(1), page(s): 25—29 | 10.1099/ijs.0.019752-0 |
| Downes2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Alloprevotella rava, Alloprevotella tannerae | 2013 |
Downes, Julia; Dewhirst, Floyd E.; Tanner, Anne C. R.; Wade, William G. |
Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/4), page(s): 1214—1218 | 10.1099/ijs.0.041376-0 |
| Drancourt2001 | general characteristics, enzymes, metabolites, utilisation | Raoultella ornithinolytica, Raoultella terrigena, Raoultella planticola, Klebsiella pneumoniae, Klebsiella oxytoca | 2001 |
Drancourt, M.; Bollet, C.; Carta, A.; Rousselier, P. |
Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(3), page(s): 925—932 | 10.1099/00207713-51-3-925 |
| Dridi2012 | summary, general characteristics, metabolites, utilisation | Methanomassiliicoccus luminyensis | 2012 |
Dridi, Bédis; Fardeau, Marie-Laure; Ollivier, Bernard; Raoult, Didier; Drancourt, Michel |
Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt/8), page(s): 1902—1907 | 10.1099/ijs.0.033712-0 |
| Du2015 | summary, general characteristics, enzymes, metabolites, utilisation | Pedobacter daejeonensis, Pedobacter trunci | 2015 |
Du, Juan; Singh, Hina; Ngo, Hien T. T.; Won, Kyung-Hwa; Kim, Ki-Young; Yi, Tae-Hoo |
Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/4), page(s): 1241—1246 | 10.1099/ijs.0.000087 |
| Dubourg2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Paenibacillus antibioticophila | 2015 |
Dubourg, G.; Cimmino, T.; Senkar, S.a.; Lagier, J.-C.; Robert, C.; Flaudrops, C.; Brouqui, P.; Raoult, D.; Fournier, P.-E.; Rolain, J.-M. |
Non-contiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11T, the type strain of Paenibacillus antibioticophila. | New Microbes and New Infections | 8, page(s): 137—147 | 10.1016/j.nmni.2015.10.006 |
| Dubourg2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Nocardioides massiliensis | 2016 |
Dubourg, G.; Sankar, S. A.; Rathored, J.; Lagier, J.-C.; Robert, C.; Couderc, C.; Papazian, L.; Raoult, D.; Fournier, P.-E. |
Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13T. | New Microbes and New Infections | 10, page(s): 47—57 | 10.1016/j.nmni.2016.01.001 |
| Dubourg2016a | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Risungbinella massiliensis | 2016 |
Dubourg, Grégory; Lagier, Jean-Christophe; Robert, Catherine; Armstrong, Nicholas; Couderc, Carine; Fournier, Pierre-Edouard; Raoult, Didier |
Risungbinella massiliensis sp. nov., a new member of Thermoactinomycetaceae isolated from human gut. | Antonie van Leeuwenhoek | 109(6), page(s): 773—784 | 10.1007/s10482-016-0677-6 |
| Duckworth1998 | summary, general characteristics, enzymes, antibiotics, utilisation | Dietzia natronolimnaea | 1998 |
Duckworth, A. W.; Grant, Susan; Grant, W. D.; Jones, Brian E.; Meijer, Daan |
Dietzia natronolimnaios sp. nov., a new member of the genus Dietzia isolated from an East African soda lake. | Extremophiles | 2(3), page(s): 359—366 | 10.1007/s007920050079 |
| Duncan2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Faecalibacterium prausnitzii | 2002 |
Duncan, S. H.; Georgina L. Hold, Hermie J. M. Harmsen, Colin S. Stewart and Harry J. Flint |
Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(6), page(s): 2141—2146 | 10.1099/ijs.0.02241-0 |
| Duncan2002a | summary, antibiotics | Oxalobacter formigenes | 2002 |
Duncan, Sylvia H.; Richardson, Anthony J.; Kaul, Poonam; Holmes, Ross P.; Allison, Milton J.; Stewart, Colin S. |
Oxalobacter formigenes and Its Potential Role in Human Health. | Applied and Environmental Microbiology | 68(8), page(s): 3841—3847 | 10.1128/aem.68.8.3841-3847.2002 |
| Duncan2002b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, butyrate | Roseburia intestinalis | 2002 |
Duncan, S. H. |
Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 52(5), page(s): 1615—1620 | 10.1099/ijs.0.02143-0 |
| Duncan2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Roseburia faecis, Roseburia hominis, Roseburia inulinivorans | 2006 |
Duncan, Sylvia H.; Aminov, Rustam I.; Scott, Karen P.; Louis, Petra; Stanton, Thaddeus B.; Flint, Harry J. |
Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 56(10), page(s): 2437—2441 | 10.1099/ijs.0.64098-0 |
| Dunlap2016 | summary, general characteristics | Bacillus axarquiensis, Brevibacterium halotolerans, Bacillus malacitensis | 2016 |
Dunlap, Christopher A.; Bowman, Michael J.; Schisler, David A.; Rooney, Alejandro P. |
Genome analysis shows Bacillus axarquiensis is not a later heterotypic synonym of Bacillus mojavensis: reclassification of Bacillus malacitensis and Brevibacterium halotolerans as heterotypic synonyms of Bacillus axarquiensis. | International Journal of Systematic and Evolutionary Microbiology | 66(6), page(s): 2438—2443 | 10.1099/ijsem.0.001048 |
| Dunlap2019 | taxonomy | Lysinibacillus sphaericus, Lysinibacillus mangiferihumi, Lysinibacillus tabacifolii, Lysinibacillus varians | 2019 |
Dunlap, Christopher A. |
Lysinibacillus mangiferihumi, Lysinibacillus tabacifolii and Lysinibacillus varians are later heterotypic synonyms of Lysinibacillus sphaericus. | International Journal of Systematic and Evolutionary Microbiology | 69(9), page(s): 2958—2962 | 10.1099/ijsem.0.003577 |
| Durand2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Drancourtella massiliensis | 2016 |
Durand, G. A.; Lagier, J.-C.; Khelaifia, S.; Armstrong, N.; Robert, C.; Rathored, J.; Fournier, P.-E.; Raoult, D. |
Drancourtella massiliensis gen. nov., sp. nov. isolated from fresh healthy human faecal sample from South France. | New Microbes and New Infections | 11, page(s): 34—42 | 10.1016/j.nmni.2016.02.002 |
| Durand2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blautia massiliensis | 2017 |
Durand, Guillaume A.; Pham, Thao; Ndongo, Sokhna; Traore, Sory Ibrahima; Dubourg, Grégory; Lagier, Jean-Christophe; Michelle, Caroline; Armstrong, Nicholas; Fournier, Pierre-Edouard; Raoult, Didier; Million, Matthieu |
Blautia massiliensis sp. nov., isolated from a fresh human fecal sample and emended description of the genus Blautia. | Anaerobe | 43, page(s): 47—55 | 10.1016/j.anaerobe.2016.12.001 |
| Durand2017a | summary, general characteristics | Intestinimonas massiliensis | 2017 |
Durand, G.; Afouda, P.; Raoult, D.; Dubourg, G. |
'Intestinimonas massiliensis' sp. nov, a new bacterium isolated from human gut. | New Microbes and New Infections | 15, page(s): 1—2 | 10.1016/j.nmni.2016.09.014 |
| Durand2017b | summary, general characteristics | Gorbachella massiliensis, Fenollaria timonensis, Intestinimonas timonensis, Collinsella ihuae | 2017 |
Durand, G. A.; Cadoret, F.; Lagier, J. C.; Fournier, P. E.; Raoult, D. |
Description of 'Gorbachella massiliensis' gen. nov., sp. nov., 'Fenollaria timonensis' sp. nov., 'Intestinimonas timonensis' sp. nov. and 'Collinsella ihuae' sp. nov. isolated from healthy fresh stools with culturomics. | New Microbes and New Infections | 16, page(s): 60—62 | 10.1016/j.nmni.2017.01.005 |
| Edmond1993 | summary, general characteristics, antibiotics, opportunistic pathogen | Agrobacterium radiobacter | 1993 |
Edmond, M. B.; Riddler, S. A.; Baxter, C. M.; Wicklund, B. M.; Pasculle, A. W. |
Agrobacterium radiobacter: A Recently Recognized Opportunistic Pathogen. | Clinical Infectious Diseases | 16(3), page(s): 388—391 | 10.1093/clind/16.3.388 |
| Edouard2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Corynebacterium jeddahense | 2014 |
Edouard, Sophie; Bibi, Fehmida; Dhamodharan, Ramasamy; Lagier, Jean-Christophe; Azhar, Esam Ibraheen; Robert, Catherine; Caputo, Aurelia; Yasir, Muhammad; Jiman-Fatani, Asif Ahmad; Alawi, Maha; Fournier, Pierre-Edouard; Raoult, Didier |
Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 987—1002 | 10.4056/sigs.5561028 |
| Edouard2014a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Nesterenkonia massiliensis | 2014 |
Edouard, Sophie; Sankar, Senthil; Dangui, Nicole Prisca Makaya; Lagier, Jean-Christophe; Michelle, Caroline; Raoult, Didier; Fournier, Pierre-Edouard |
Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1T. | Standards in Genomic Sciences | 9(3), page(s): 866—882 | 10.4056/sigs.5631022 |
| Eeckhaut2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, butyrate | Butyricicoccus pullicaecorum | 2008 |
Eeckhaut, V.; Immerseel, F. Van; Teirlynck, E.; Pasmans, F.; Fievez, V.; Snauwaert, C.; Haesebrouck, F.; Ducatelle, R.; Louis, P.; Vandamme, P. |
Butyricicoccus pullicaecorum gen. nov., sp. nov., an anaerobic, butyrate-producing bacterium isolated from the caecal content of a broiler chicken. | International Journal of Systematic and Evolutionary Microbiology | 58(12), page(s): 2799—2802 | 10.1099/ijs.0.65730-0 |
| Eeckhaut2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, butyrate | Anaerostipes butyraticus | 2010 |
Eeckhaut, Venessa; Immerseel, Filip Van; Pasmans, Frank; Brandt, Evie De; Haesebrouck, Freddy; Ducatelle, Richard; Vandamme, Peter |
Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes. | International Journal of Systematic and Evolutionary Microbiology | 60(5), page(s): 1108—1112 | 10.1099/ijs.0.015289-0 |
| Eeckhaut2016 | probiotics, health | Butyricicoccus pullicaecorum | 2016 |
Eeckhaut, Venessa; Wang, Jun; Parys, Alexander Van; Haesebrouck, Freddy; Joossens, Marie; Falony, Gwen; Raes, Jeroen; Ducatelle, Richard; Immerseel, Filip Van |
The Probiotic Butyricicoccus pullicaecorum Reduces Feed Conversion and Protects from Potentially Harmful Intestinal Microorganisms and Necrotic Enteritis in Broilers. | Frontiers in Microbiology | 7, | 10.3389/fmicb.2016.01416 |
| Efimov2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Prevotella rara | 2018 |
Efimov, Boris A.; Chaplin, Andrei V.; Shcherbakova, Victoria A.; Suzina, Natalia E.; Podoprigora, Irina V.; Shkoporov, Andrei N. |
Prevotella rara sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(12), page(s): 3818—3825 | 10.1099/ijsem.0.003066 |
| Egan2021 | gut microbiome, spores, educational | Sporobiota, antibiotic treatment | 2021 |
Egan, Muireann; Dempsey, Eugene; Ryan, C. Anthony; Ross, R. Paul; Stanton, Catherine |
The Sporobiota of the Human Gut. | Gut Microbes | 13(1), page(s): 1863134 | 10.1080/19490976.2020.1863134 |
| Eggerth1933 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Phocaeicola vulgatus, Bacteroides gulosus, Bacteroides thetaiotaomicron, Bacteroides variabilis, Bacteroides uniformis, Bacteroides vulgatus, Parabacteroides distasonis, Bacteroides tumidus, Bacteroides ovatus, Bacteroides convexus, Bacteroides exiguus, Bacteroides insolitus, Fusobacterium varium, Ezakiella coagulans, Bacteroides siccus | 1933 |
Eggerth, Arnold H.; Gagnon, Bernard H. |
The Bacteroides of Human Feces. | Journal of bacteriology | 25(4), page(s): 389—413 | 10.1128/jb.25.4.389-413.1933 |
| Eggerth1935 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides catenaformis, Bacteroides ventriosus, Eubacterium tortuosum | 1935 |
Eggerth, A. H. |
The Gram-positive Non-spore-bearing Anaerobic Bacilli of Human Feces. | Journal of bacteriology | 30, page(s): 277—299 | 10.1128/jb.30.3.277-299.1935 |
| Eiken1958 | summary, general characteristics, acid from carbohydrates, metabolites | Bacteroides corrodens | 1958 |
Eiken, M. |
Studies on an anaerobic, rodshaped, gram-negative microorganism: Bacteroides corrodens n. sp. | Acta pathologica et microbiologica Scandinavica | 43, page(s): 404—416 | 13594456 PMID |
| Eksic1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, water source | Yersinia rohdei | 1987 |
Eksic, S.; Steigerwalt, A. G.; Bockemuhl, J.; Huntley-Carter, G. P.; Brenner, D. J. |
Yersinia rohdei sp. nov. Isolated from Human and Dog Feces and Surface Water. | International Journal of Systematic Bacteriology | 37(4), page(s): 327—332 | 10.1099/00207713-37-4-327 |
| Elomari1997 | summary, general characteristics, enzymes, metabolites, utilisation, clinical sources | Pseudomonas monteilii | 1997 |
Elomari, M.; Coroler, L.; Verhille, S.; Izard, D.; Leclerc, H. |
Pseudomonas monteilii sp. nov., Isolated from Clinical Specimens. | International Journal of Systematic Bacteriology | 47(3), page(s): 846—852 | 10.1099/00207713-47-3-846 |
| Embley1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, vagina | Lactobacillus vaginalis | 1989 |
Embley, T. M.; Faquir, N.; Bossart, W.; Collins, M. D. |
Lactobacillus vaginalis sp. nov. from the Human Vagina. | International Journal of Systematic Bacteriology | 39(3), page(s): 368—370 | 10.1099/00207713-39-3-368 |
| Ennahar2005 | summary, general characteristics, enzymes, acid from carbohydrates | Tetragenococcus solitarius | 2005 |
Ennahar, Saïd; Cai, Yimin |
Biochemical and genetic evidence for the transfer of Enterococcus solitarius Collins et al. 1989 to the genus Tetragenococcus as Tetragenococcus solitarius comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 589—592 | 10.1099/ijs.0.63205-0 |
| Esteve2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, water source | Aeromonas jandaei | 2003 |
Esteve, Consuelo; Valera, Lázara; Gutiérrez, Carmen; Ventosa, Antonio |
Taxonomic study of sucrose-positive Aeromonas jandaei-like isolates from faeces, water and eels: emendation of A. jandaei Carnahan et al. 1992. | International Journal of Systematic and Evolutionary Microbiology | 53(5), page(s): 1411—1419 | 10.1099/ijs.0.02504-0 |
| Etoh1993 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, oral cavity | Campylobacter showae | 1993 |
Etoh, Y.; Dewhirst, F. E.; Paster, B. J.; Yamamoto, A.; N., Goto |
Campylobacter showae sp. nov., Isolated from the Human Oral Cavity. | International Journal of Systematic Bacteriology | 43(4), page(s): 631—639 | 10.1099/00207713-43-4-631 |
| Ewing1949 | taxonomy | Shigella dysenteriae, Shigella flexneri, Shigella sonnei, Shigella boydii | 1949 |
Ewing, W. H. |
Shigella Nomenclature. | Journal of bacteriology | 57, page(s): 633—638 | 10.1128/jb.57.6.633-638.1949 |
| Ewing1962 | summary, general characteristics, acid from carbohydrates, metabolites | Providencia stuartii, Providencia alcalifaciens, Providencia rettgeri, Providencia rustigianii, Morganella morganii, Proteus mirabilis, Proteus vulgaris | 1962 |
Ewing, W. H. |
The tribe Proteeae: its nomenclature and taxonomy. | International Bulletin of Bacteriological Nomenclature and Taxonomy | 12(3), page(s): 93—102 | 10.1099/0096266x-12-3-93 |
| Ezaki1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Finegoldia magna, Anaerococcus tetradius, Peptoniphilus indolicus, Anaerococcus prevotii, Peptoniphilus asaccharolyticus, Staphylococcus saccharolyticus | 1983 |
Ezaki, T.; Yamamoto, N.; Ninomiya, K.; Suzuki, S.; Yabuuchi, E. |
Transfer of Peptococcus indolicus, Peptococcus asaccharolyticus, Peptococcus prevotii, and Peptococcus magnus to the Genus Peptostreptococcus and Proposal of Peptostreptococcus tetradius sp. nov. | International Journal of Systematic Bacteriology | 33(4), page(s): 683—698 | 10.1099/00207713-33-4-683 |
| Ezaki1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Peptostreptococcus hydrogenalis | 1990 |
Ezaki, T.; Liu, S.-L.; Hashimoto, Y.; Yabuuchi, E. |
Peptostreptococcus hydrogenalis sp. nov. from Human Fecal and Vaginal Flora. | International Journal of Systematic Bacteriology | 40(3), page(s): 305—306 | 10.1099/00207713-40-3-305 |
| Ezaki1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ruminococcus hansenii, Ruminococcus productus | 1994 |
Ezaki, T.; N., L. I.; Hashimoto, Y.; Miura, H.; Yamamoto, H. |
16S Ribosomal DNA Sequences of Anaerobic Cocci and Proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov. | International Journal of Systematic Bacteriology | 44(1), page(s): 130—136 | 10.1099/00207713-44-1-130 |
| Ezaki2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Peptoniphilus ivorii, Peptoniphilus asaccharolyticus, Peptoniphilus harei, Peptoniphilus indolicus, Peptoniphilus lacrimalis, Anaerococcus prevotii, Anaerococcus tetradius, Anaerococcus hydrogenalis, Anaerococcus vaginalis, Anaerococcus octavius, Anaerococcus lactolyticus | 2001 |
Ezaki, T.; Kawamura, Y.; Li, N.; Li, Z. Y.; Zhao, L.; Shu, S. |
Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1521—1528 | 10.1099/00207713-51-4-1521 |
| Ezechukwu2019 | antibiotics | Aerococcus viridans | 2019 |
Ezechukwu, Ifunanya; Singal, Manisha; Igbinosa, Osamuyimen |
Aerococcus Viridans: Case Report, Microbiology, and Literature Review. | American Journal of Case Reports | 20, page(s): 697—700 | 10.12659/ajcr.914866 |
| Fabre2015 | antibiotics | Bordetella hinzii | 2015 |
Fabre, Aude; Dupin, Clarisse; Bénézit, François; Goret, Julien; Piau, Caroline; Jouneau, Stéphane; Guillot, Sophie; Mégraud, Francis; Kayal, Samer; Desrues, Benoit; Coustumier, Alain Le; Guiso, Nicole |
Opportunistic Pulmonary Bordetella hinzii Infection after Avian Exposure. | Emerging Infectious Diseases | 21(12), page(s): 2122—2126 | 10.3201/eid2112.150400 |
| Fairbrother1940 | summary, general characteristics, enzymes, acid from carbohydrates | Staphylococcus saprophyticus subsp. saprophyticus | 1940 |
Fairbrother, R. W. |
Coagulase production as a criterion for the classification of the staphylococci. | The Journal of Pathology and Bacteriology | 50(1), page(s): 83—88 | 10.1002/path.1700500112 |
| Falsen1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus iners | 1999 |
Falsen, Enevold; P, Christina; Sjödén, Berit; Ohlén, Maria; Collins, Matthew D. |
Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(1), page(s): 217—221 | 10.1099/00207713-49-1-217 |
| Fang2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, diarrhoea | Shewanella carassii | 2017 |
Fang, Yujie; Wang, Yonglu; Liu, Zongdong; Lu, Binghuai; Dai, Hang; Kan, Biao; Wang, Duochun |
Shewanella carassii sp. nov., isolated from surface swabs of crucian carp and faeces of a diarrhoea patient. | International Journal of Systematic and Evolutionary Microbiology | 67(12), page(s): 5284—5289 | 10.1099/ijsem.0.002511 |
| Farmer1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Enterobacter sakazakii | 1980 |
Farmer, J. J.; Asbury, M. A.; Hickman, F. W.; Brenner, D. J. |
Enterobacter sakazakii: A New Species of Enterobacteriaceae Isolated from Clinical Specimens. | International Journal of Systematic Bacteriology | 30(3), page(s): 569—584 | 10.1099/00207713-30-3-569 |
| Farmer1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Kluyvera ascorbata, Kluyvera cryocrescens | 1981 |
Farmer, J. J.; Fanning, G. R.; Huntley-Carter, G. P.; Holmes, B.; Hickman, F. W.; Richard, C.; Brenner, D. J. |
Kluyvera, a new (redefined) genus in the family Enterobacteriaceae: identification of Kluyvera ascorbata sp. nov. and Kluyvera cryocrescens sp. nov. in clinical specimens. | Journal of Clinical Microbiology | 13, page(s): 919—933 | 10.1128/jcm.13.5.919-933.1981 |
| Farmer1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, blood infection | Cedecea neteri | 1982 |
Farmer, J. J.; Sheth, N. K.; Hudzinski, J. A.; Rose, H. D.; Asbury, M. F. |
Bacteremia due to Cedecea neteri sp. nov. | Journal of Clinical Microbiology | 16, page(s): 775—778 | 10.1128/jcm.16.4.775-778.1982 |
| Farmer1985a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Escherichia fergusonii, Enterobacter taylorae | 1985 |
Farmer, J. J.; Fanning, G. R.; Davis, B. R.; O'Hara, C. M.; Riddle, C.; Hickman-Brenner, F. W.; Asbury, M. A.; Lowery, V. A.; Brenner, D. J. |
Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens. | Journal of Clinical Microbiology | 21, page(s): 77—81 | 10.1128/jcm.21.1.77-81.1985 |
| Farrow1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus alactolyticus, Streptococcus saccharolyticus, Streptococcus equinus | 1984 |
Farrow, J. A. E.; Kruze, J.; Phillips, B. A.; Bramley, A. J.; Collins, M. D. |
Taxonomic Studies on Streptococcus bovis and Streptococcus equinus: Description of Streptococcus alactolyticus sp. nov. and Streptococcus saccharolyticus sp. nov. | Systematic and Applied Microbiology | 5(4), page(s): 467—482 | 10.1016/s0723-2020(84)80004-1 |
| Farrow1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Lactobacillus oris | 1988 |
Farrow, J. A. E.; Collins, M. D. |
Notes: Lactobacillus oris sp. nov. from the Human Oral Cavity. | International Journal of Systematic Bacteriology | 38(1), page(s): 116—118 | 10.1099/00207713-38-1-116 |
| Farrow1989 | summary, general characteristics, acid from carbohydrates, antibiotics | Leuconostoc citreum, Weissella paramesenteroides, Leuconostoc pseudomesenteroides, Leuconostoc mesenteroides subsp. mesenteroides, Leuconostoc lactis | 1989 |
Farrow, J. A. E.; Facklam, R. R.; Collins, M. D. |
Nucleic Acid Homologies of Some Vancomycin-Resistant Leuconostocs and Description of Leuconostoc citreum sp. nov. and Leuconostoc pseudomesenteroides sp. nov. | International Journal of Systematic Bacteriology | 39(3), page(s): 279—283 | 10.1099/00207713-39-3-279 |
| Favaro2014 | health, meningitis | Listeria innocua | 2014 |
Favaro, Marco; Sarmati, Loredana; Sancesario, Giuseppe; Fontana, Carla |
First case of Listeria innocua meningitis in a patient on steroids and eternecept. | JMM Case Reports | 1(2), | 10.1099/jmmcr.0.003103 |
| Feng2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, butyrate | Eubacterium maltosivorans | 2018 |
Feng, Yuan; Stams, Alfons J. M.; Sánchez-Andrea, Irene; de Vos, Willem M. |
Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism. | International Journal of Systematic and Evolutionary Microbiology | 68(11), page(s): 3546—3550 | 10.1099/ijsem.0.003028 |
| Feng2018a | general characteristics, enzymes, utilisation | Sphingomonas adhaesiva, Sphingomonas ginsenosidimutans | 2018 |
Feng, Guang-Da; Yang, Song-Zhen; Zhu, Hong-Hui; Li, Hua-Ping |
Emended descriptions of the species Sphingomonas adhaesiva Yabuuchi et al. 1990 and Sphingomonas ginsenosidimutans Choi et al. 2011. | International Journal of Systematic and Evolutionary Microbiology | 68(3), page(s): 970—973 | 10.1099/ijsem.0.002557 |
| Fenner2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, health, blood infections | Bacteroides massiliensis | 2005 |
Fenner, Lukas; Roux, Véronique; Mallet, Marie-Noëlle; Raoult, Didier |
Bacteroides massiliensis sp. nov., isolated from blood culture of a newborn. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1335—1337 | 10.1099/ijs.0.63350-0 |
| Feurer2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Corynebacterium tuberculostearicum | 2004 |
Feurer, Carole; Clermont, Dominique; Bimet, François; Candréa, Adina; Jackson, Mary; Glaser, Philippe; Bizet, Chantal; Dauga, Catherine |
Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1055—1061 | 10.1099/ijs.0.02907-0 |
| Finegold2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cetobacterium somerae | 2003 |
Finegold, Sydney M.; Vaisanen, Marja-Liisa; Molitoris, Denise R.; Tomzynski, Thomas J.; Song, Yuli; Liu, Chengxu; Collins, Matthew D.; Lawson, Paul A. |
Cetobacterium somerae sp. nov. from Human Feces and Emended Description of the Genus Cetobacterium. | Systematic and Applied Microbiology | 26(2), page(s): 177—181 | 10.1078/072320203322346010 |
| Finegold2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaerofustis stercorihominis | 2004 |
Finegold, Sydney M.; Lawson, Paul A.; Vaisanen, Marja-Liisa; Molitoris, Denise R.; Song, Yuli; Liu, Chengxu; Collins, Matthew D. |
Anaerofustis stercorihominis gen. nov., sp. nov., from human feces. | Anaerobe | 10(1), page(s): 41—45 | 10.1016/j.anaerobe.2003.10.002 |
| Finegold2004a | summary, general characteristics, enzymes, metabolites, antibiotics | Porphyromonas uenonis | 2004 |
Finegold, Sydney M.; Vaisanen, Marja-Liisa; Rautio, Merja; Eerola, Erkki; Summanen, Paula; Molitoris, Denise; Song, Yuli; Liu, Chengxu; Jousimies-Somer, Hannele |
Porphyromonas uenonis sp. nov., a Pathogen for Humans Distinct from P. asaccharolytica and P. endodontalis. | Journal of Clinical Microbiology | 42(11), page(s): 5298—5301 | 10.1128/jcm.42.11.5298-5301.2004 |
| Fonkou2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea, Actinomyces oralis | 2018 |
Fonkou, M. D. Mbogning; Mailhe, M.; Ndongo, S.; Ricaboni, D.; Morand, A.; Cornu, F.; Alou, M. Tidjani; Bilen, M.; Andrieu, C.; Levasseur, A.; Cadoret, F.; Raoult, D. |
Non-contiguous finished genome sequences and descriptions of Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea and Actinomyces oralis sp. nov. identified by culturomics. | New Microbes and New Infections | 25, page(s): 30—44 | 10.1016/j.nmni.2018.06.004 |
| Fortina2001 | summary, general characteristics, enzymes, acid from carbohydrates | Ureibacillus thermosphaericus, Ureibacillus terrenus | 2001 |
Fortina, M. G.; Pukall, R.; Schumann, P.; Mora, D.; Parini, C.; Manachini, P. L.; Stackebrandt, E. |
Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(2), page(s): 447—455 | 10.1099/00207713-51-2-447 |
| Fox1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Micrococcus luteus, Micrococcus varians | 1976 |
Fox, R.H. |
Differentiation of Micrococcus luteus and Micrococcus varians on the Basis of Catalase Isoenzymes. | Journal of General Microbiology | 93(2), page(s): 272—277 | 10.1099/00221287-93-2-272 |
| Fox1988 | summary | Campylobacter pylori subsp. mustelae, Campylobacter pylori | 1988 |
Fox, J.G.; Taylor, N. S.; Edmonds, P.; Brenner, D. J. |
Campylobacter pylori subsp. mustelae subsp. nov. Isolated from the Gastric Mucosa of Ferrets (Mustela putorius furo), and an Emended Description of Campylobacter pylori. | International Journal of Systematic Bacteriology | 38(4), page(s): 367—370 | 10.1099/00207713-38-4-367 |
| Fox1989 | summary, general characteristics, enzymes, antibiotics | Campylobacter mustelae | 1989 |
Fox, J.G.; Chilvers, T.; Goodwin, C. S.; Taylor, N. S.; Edmonds, P.; L. I., Sly; Brenner, D. J. |
Campylobacter mustelae, a New Species Resulting from the Elevation of Campylobacter pylori subsp. mustelae to Species Status. | International Journal of Systematic Bacteriology | 39(3), page(s): 301—303 | 10.1099/00207713-39-3-301 |
| Fox2000 | summary, general characteristics, enzymes, antibiotics, diarrhoea | Helicobacter canadensis | 2000 |
Fox, James G.; Chien, Chih Ching; Dewhirst, Floyd E.; Paster, Bruce J.; Shen, Zeli; Melito, Pasquale L.; Woodward, David L.; Rodgers, Frank G. |
Helicobacter canadensis sp. nov. Isolated from Humans with Diarrhea as an Example of an Emerging Pathogen. | Journal of Clinical Microbiology | 38(7), page(s): 2546—2549 | 10.1128/jcm.38.7.2546-2549.2000 |
| Francis2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Virgibacillus ndiopensis | 2019 |
Francis, R.; Anani, H.; Fontanini, A.; Fournier, P. E.; Scola, B. L. A.; Raoult, D.; Khalil, J. Y. Bou |
Virgibacillus ndiopensis sp. nov., a new halophilic bacterium isolated from the stool of a healthy 11-year-old boy. | New Microbes and New Infections | 30, page(s): 100541 | 10.1016/j.nmni.2019.100541 |
| Freney1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Staphylococcus lugdunensis, Staphylococcus schleiferi | 1988 |
Freney, J.; Brun, Y.; Bes, M.; Meugnier, H.; Grimont, F.; Grimont, P. A. D.; Nervi, C.; Fleurette, J. |
Staphylococcus lugdunensis sp. nov. and Staphylococcus schleiferi sp. nov., Two Species from Human Clinical Specimens. | International Journal of Systematic Bacteriology | 38(2), page(s): 168—172 | 10.1099/00207713-38-2-168 |
| Fritze2001 | taxonomy | Bacillus atrophaeus | 2001 |
Fritze, D.; Pukall, R. |
Reclassification of bioindicator strains Bacillus subtilis DSM 675 and Bacillus subtilis DSM 2277 as Bacillus atrophaeus. | International Journal of Systematic and Evolutionary Microbiology | 51(1), page(s): 35—37 | 10.1099/00207713-51-1-35 |
| Fujisawa1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus aviarius | 1984 |
Fujisawa, Tomohiko; Shirasaka, Shoji; Watabe, Junko; Mitsuoka, Tomotari |
Lactobacillus aviarius sp. nov.: A new species isolated from the intestine of chickens. | Systematic and Applied Microbiology | 5(3), page(s): 414—420 | 10.1016/s0723-2020(84)80042-9 |
| Fujisawa1992 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus gallinarum, Lactobacillus johnsonii, Lactobacillus amylovorus | 1992 |
Fujisawa, T.; Benno, Y.; Yaeshima, T.; Mitsuoka, T. |
Taxonomic Study of the Lactobacillus acidophilus Group, with Recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and Synonymy of Lactobacillus acidophilus Group A3 (Johnson et al. 1980) with the Type Strain of Lactobacillus amylovorus (Nakamura 1981). | International Journal of Systematic Bacteriology | 42(3), page(s): 487—491 | 10.1099/00207713-42-3-487 |
| Funke1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks, clinical sources | Cellulomonas hominis | 1995 |
Funke, G.; Ramos, C. P.; Collins, M. D. |
Identification of some clinical strains of CDC coryneform group A-3 and A-4 bacteria as Cellulomonas species and proposal of Cellulomonas hominis sp. nov. for some group A-3 strains. | Journal of Clinical Microbiology | 33(8), page(s): 2091—2097 | 10.1128/jcm.33.8.2091-2097.1995 |
| Funke1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Corynebacterium coyleae | 1997 |
Funke, G.; Ramos, C. P; Collins, M. D. |
Corynebacterium coyleae sp. nov., Isolated from Human Clinical Specimens. | International Journal of Systematic Bacteriology | 47(1), page(s): 92—96 | 10.1099/00207713-47-4-952 |
| Funke1997a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Corynebacterium mucifaciens | 1997 |
Funke, G.; Lawson, P. A.; Collins, M. D. |
Corynebacterium mucifaciens sp. nov., an Unusual Species from Human Clinical Material. | International Journal of Systematic Bacteriology | 47(4), page(s): 952—957 | 10.1099/00207713-47-1-92 |
| Furuya2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blautia glucerasei, Blautia glucerasea | 2010 |
Furuya, Hideki; Ide, Yukari; Hamamoto, Makiko; Asanuma, Narito; Hino, Tsuneo |
Isolation of a novel bacterium, Blautia glucerasei sp. nov., hydrolyzing plant glucosylceramide to ceramide. | Archives of Microbiology | 192(5), page(s): 365—372 | 10.1007/s00203-010-0566-8 |
| Gaillot2013 | summary, general characteristics | Yersinia pseudotuberculosis | 2013 |
Gaillot, Olivier; Lemenand, Olivier; Marceau, Michaël; Simonet, Michel |
Proposed reclassification of Pasteurella lymphangitidis Sneath and Stevens 1990 as Yersinia pseudotuberculosis. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/10), page(s): 3927—3929 | 10.1099/ijs.0.051524-0 |
| Gajdacs2020 | urinary tract infection | Actinomyces cardiffensis, Actinomyces georgiae, Actinomyces graevenitzii, Actinomyces israelii, Actinomyces naeslundii, Actinomyces oris, Actinomyces urogenitalis, Actinomyces viscosus | 2020 |
Gajdács, Márió; Urbán, Edit |
The Pathogenic Role of Actinomyces spp. and Related Organisms in Genitourinary Infections: Discoveries in the New, Modern Diagnostic Era. | Antibiotics | 9(8), page(s): 524 | 10.3390/antibiotics9080524 |
| Gallego2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, water source | Massilia aurea | 2006 |
Gallego, Virginia; Sánchez-Porro, Cristina; García, Maria Teresa; Ventosa, Antonio |
Massilia aurea sp. nov., isolated from drinking water. | International Journal of Systematic and Evolutionary Microbiology | 56(10), page(s): 2449—2453 | 10.1099/ijs.0.64389-0 |
| Gallego2006a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Methylobacterium adhaesivum | 2006 |
Gallego, Virginia; García, Maria Teresa; Ventosa, Antonio |
Methylobacterium adhaesivum sp. nov., a methylotrophic bacterium isolated from drinking water. | International Journal of Systematic and Evolutionary Microbiology | 56(2), page(s): 339—342 | 10.1099/ijs.0.63966-0 |
| Ganesan2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cloacibacillus evryensis | 2008 |
Ganesan, A.; Chaussonnerie, S.; Tarrade, A.; Dauga, C.; Bouchez, T.; Pelletier, E.; Paslier, D. Le; Sghir, A. |
Cloacibacillus evryensis gen. nov., sp. nov., a novel asaccharolytic, mesophilic, amino-acid-degrading bacterium within the phylum 'Synergistetes', isolated from an anaerobic sludge digester. | International Journal of Systematic and Evolutionary Microbiology | 58(9), page(s): 2003—2012 | 10.1099/ijs.0.65645-0 |
| GarciaFraile2015 | summary, general characteristics, enzymes, utilisation | Serratia myotis, Serratia vespertilionis, Serratia marcescens, Serratia ficaria | 2015 |
García-Fraile, P.; Chudí?ková , M.; Benada, O.; Pikula, J.; Kola?ík , M. |
Serratia myotis sp. nov. and Serratia vespertilionis sp. nov., isolated from bats hibernating in caves. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/1), page(s): 90—94 | 10.1099/ijs.0.066407-0 |
| GarciaLopez2019 | taxonomy | Bacteroidetes | 2019 |
García-López, Marina; Meier-Kolthoff, Jan P.; Tindall, Brian J.; Gronow, Sabine; Woyke, Tanja; Kyrpides, Nikos C.; Hahnke, Richard L.; Göker, Markus |
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. | Frontiers in Microbiology | 10, | 10.3389/fmicb.2019.02083 |
| Gardiner2015 | antibiotics, blood infection | Eggerthella lenta | 2015 |
Gardiner, B. J.; Tai, A. Y.; Kotsanas, D.; Francis, M. J.; Roberts, S. A.; Ballard, S. A.; Junckerstorff, R. K.; Korman, T. M. |
Clinical and Microbiological Characteristics of Eggerthella lenta Bacteremia. | Journal of Clinical Microbiology | 53(2), page(s): 626—635 | 10.1128/jcm.02926-14 |
| Gardner1955 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, vaginitis | Haemophilus vaginalis | 1955 |
Gardner, Herman L.; Dukes, Charles D. |
Haemophilus vaginalis vaginitis. | American Journal of Obstetrics and Gynecology | 69(5), page(s): 962—976 | 10.1016/0002-9378(55)90095-8 |
| Garner2002 | summary, general characteristics | Allisonella histaminiformans | 2002 |
Garner, Matthew R.; Flint, Joseph F.; Russell, James B. |
Allisonella histaminiformans gen. nov., sp. nov. | Systematic and Applied Microbiology | 25(4), page(s): 498—506 | 10.1078/07232020260517625 |
| Garnova2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Anoxynatronum sibiricum | 2003 |
Garnova, Elena S.; Zhilina, Tatjana N.; Tourova, Tatjana P.; Lysenko, Anatoli M. |
Anoxynatronum sibiricum gen. nov., sp. nov. alkaliphilic saccharolytic anaerobe from cellulolytic community of Nizhnee Beloe (Transbaikal region). | Extremophiles | 7(3), page(s): 213—220 | 10.1007/s00792-002-0312-5 |
| Garvie1967 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Weissella paramesenteroides, Leuconostoc oenos | 1967 |
Garvie, E. I. |
The Growth Factor and Amino Acid Requirements of Species of the Genus Leuconostoc, including Leuconostoc paramesenteroides (sp. nov.) and Leuconostoc oenos. | Journal of General Microbiology | 48(3), page(s): 439—447 | 10.1099/00221287-48-3-439 |
| Gasser1970 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus jensenii | 1970 |
Gasser, F.; Mandel, M.; Rogosa, M. |
Lactobacillus jensenii sp. nov., a New Representative of the Subgenus Thermobacterium. | Journal of General Microbiology | 62(2), page(s): 219—222 | 10.1099/00221287-62-2-219 |
| Gaston1963 | summary, general characteristics, acid from carbohydrates, utilisation | Clostridium glycolicum | 1963 |
Gaston, L. W.; Stadtman, E. R. |
Fermentation of ethylene glycol by Clostridium glycolicum, sp. n. | Journal of bacteriology | 85, page(s): 356—362 | 10.1128/jb.85.2.356-362.1963 |
| Gavini1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Serratia fonticola, Serratia liquefaciens, Serratia marcescens | 1979 |
Gavini, F.; Ferragut, C.; Izard, D.; Trinel, P. A.; Leclerc, H.; Lefebvre, B.; Mossel, D. A. A. |
Serratia fonticola, a New Species from Water. | International Journal of Systematic Bacteriology | 29(2), page(s): 92—101 | 10.1099/00207713-29-2-92 |
| Gebers1981 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Pedomicrobium ferrugineum, Pedomicrobium manganicum | 1981 |
Gebers, R. |
Enrichment, Isolation, and Emended Description of Pedomicrobium ferrugineum Aristovskaya and Pedomicrobium manganicum Aristovskaya. | International Journal of Systematic Bacteriology | 31(3), page(s): 302—316 | 10.1099/00207713-31-3-302 |
| Gebers1988 | summary | Pedomicrobium americanum, Pedomicrobium australicum, Pedomicrobium ferrugineum | 1988 |
Gebers, R.; Beese, M. |
Pedomicrobium americanum sp. nov. and Pedomicrobium australicum sp. nov. from Aquatic Habitats, Pedomicrobium gen. emend., and Pedomicrobium ferrugineum sp. emend. | International Journal of Systematic Bacteriology | 38(3), page(s): 303—315 | 10.1099/00207713-38-3-303 |
| Gebhart1985 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter hyointestinalis subsp. hyointestinalis | 1985 |
Gebhart, C. J.; Edmonds, P.; Ward, G. E.; Kurtz, H. J.; Brenner, D. J. |
Campylobacter hyointestinalis' sp. nov.: a new species of Campylobacter found in the intestines of pigs and other animals. | Journal of Clinical Microbiology | 21, page(s): 715—720 | 10.1128/jcm.21.5.715-720.1985 |
| Geiger2010 | enzymes, general characteristics, utilisation, metabolites | Serratia glossinae, Serratia fonticola, Serratia ficaria, Serratia grimesii, Serratia liquefaciens, Serratia marcescens, Serratia plymuthica, Serratia proteamaculans, Serratia quinivorans, Serratia ureilytica, Serratia entomophila, Serratia odorifera, Serratia rubidaea | 2010 |
Geiger, A.; Fardeau, M.-L.; Falsen, E.; Ollivier, B.; Cuny, G. |
Serratia glossinae sp. nov., isolated from the midgut of the tsetse fly Glossina palpalis gambiensis. | International Journal of Systematic and Evolutionary Microbiology | 60(6), page(s): 1261—1265 | 10.1099/ijs.0.013441-0 |
| Georg1969 | summary, general characteristics | Actinomyces viscosus | 1969 |
Georg, L. K.; L., Pine; Gerencser, M. A. |
Actinomyces viscosus, comb. nov., a catalase positive, facultative member of the genus Actinomyces. | International Journal of Systematic Bacteriology | 19(3), page(s): 291—293 | 10.1099/00207713-19-3-291 |
| Gerard2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides sp. Strain D8 | 2007 |
Gérard, Philippe; Lepercq, Pascale; Leclerc, Marion; Gavini, Françoise; Raibaud, Pierre; Juste, Catherine |
Bacteroides sp. Strain D8, the First Cholesterol-Reducing Bacterium Isolated from Human Feces. | Applied and Environmental Microbiology | 73(18), page(s): 5742—5749 | 10.1128/aem.02806-06 |
| GernerSmidt1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Lautropia mirabilis | 1994 |
Gerner-Smidt, P.; Keiser-Nielsen, H.; Dorsch, M.; Stackebrandt, E.; Ursing, J.; J., Blom; Christensen, A. C.; Christensen, J. J.; Frederiksen, W.; Hoffmann, S.; Holten-Andersen, W.; Y. T., Ying |
Lautropia mirabilis gen. nov., sp. nov., a Gram-negative motile coccus with unusual morphology isolated from the human mouth. | Microbiology | 140(7), page(s): 1787—1797 | 10.1099/13500872-140-7-1787 |
| Gerritsen2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Romboutsia ilealis, Peptostreptococcus anaerobius, Asaccharospora irregularis, Clostridium Bartlettii, Romboutsia lituseburensis, Terrisporobacter mayombei | 2014 |
Gerritsen, Jacoline; Fuentes, Susana; Grievink, Wieke; van Niftrik, Laura; Tindall, Brian J.; Timmerman, Harro M.; Rijkers, Ger T.; Smidt, Hauke |
Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/5), page(s): 1600—1616 | 10.1099/ijs.0.059543-0 |
| Gherardi2015 | summary, general characteristics, enzymes, antibiotics, urinary tract infection | Corynebacterium glucuronolyticum | 2015 |
Gherardi, G.; Bonaventura, G. Di; Pompilio, A.; Savini, V. |
Corynebacterium glucuronolyticum causing genitourinary tract infection: Case report and review of the literature. | IDCases | 2(2), page(s): 56—58 | 10.1016/j.idcr.2015.03.001 |
| Ghimire2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Blautia brookingsii | 2020 |
Ghimire, S.; Wongkuna, S.; Kumar, R.; Nelson, E.; Christopher-Hennings, J.; Scaria, J. |
Genome sequence and description of Blautia brookingsii SG772 sp. nov., a novel bacterial species isolated from human faeces. | New Microbes and New Infections | 34, page(s): 100648 | 10.1016/j.nmni.2019.100648 |
| Glaeser2016 | clinical sources | Varibaculum anthropi | 2016 |
Glaeser, Stefanie P.; Doijad, Swapnil; Hijazin, Muaz; Chakraborty, Trinad; Falsen, Enevold; Hall, Val; Kämpfer, Peter |
Varibaculum anthropi sp. nov. represented by three genetically different genomovars isolated from clinical material and emended description of the genus Varibaculum. | Systematic and Applied Microbiology | 39(8), page(s): 546—552 | 10.1016/j.syapm.2016.09.002 |
| Glazunova2006 | health, cerebrospinal fluid | Bacillus massiliensis | 2006 |
Glazunova, Olga O.; Raoult, Didier; Roux, Véronique |
Bacillus massiliensis sp. nov., isolated from cerebrospinal fluid. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1485—1488 | 10.1099/ijs.0.63982-0 |
| Glazunova2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Prevotella timonensis | 2007 |
Glazunova, Olga O.; Launay, Thierry; Raoult, Didier; Roux, Véronique |
Prevotella timonensis sp. nov., isolated from a human breast abscess. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 883—886 | 10.1099/ijs.0.64609-0 |
| Gloeckner1998 | image, taxonomy | Nevskia ramosa | 1998 |
Glöckner, Frank Oliver; Babenzien, Hans-Dietrich; Amann, Rudolf |
Phylogeny and Identification In Situ of Nevskia ramosa. | Applied and Environmental Microbiology | 64(5), page(s): 1895—1901 | 10.1128/aem.64.5.1895-1901.1998 |
| Carvalho2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus caccae | 2006 |
da Glória S. Carvalho, Maria; Shewmaker, P. Lynn; Steigerwalt, Arnold G.; Morey, Roger E.; Sampson, A. J.; Joyce, Kevin; Barrett, Timothy J.; Teixeira, Lucia M.; Facklam, Richard R. |
Enterococcus caccae sp. nov., isolated from human stools. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1505—1508 | 10.1099/ijs.0.64103-0 |
| Gobbetti2000 | enzymes | Lactobacillus plantarum | 2000 |
Gobbetti, M.; Lavermicocca, P.; Minervini, F.; Angelis, M. De; Corsetti, A. |
Arabinose fermentation by Lactobacillus plantarum in sourdough with added pentosans and alpha-L-arabinofuranosidase: a tool to increase the production of acetic acid. | Journal of Applied Bacteriology | 88(2), page(s): 317—324 | 10.1046/j.1365-2672.2000.00962.x |
| Gomila2007 | summary, general characteristics, enzymes, metabolites, utilisation | Pelomonas aquatica, Pelomonas puraquae, Pelomonas saccharophila | 2007 |
Gomila, Margarita; Bowien, Botho; Falsen, Enevold; Moore, Edward R. B.; Lalucat, Jorge |
Description of Pelomonas aquatica sp. nov. and Pelomonas puraquae sp. nov., isolated from industrial and haemodialysis water. | International Journal of Systematic and Evolutionary Microbiology | 57(11), page(s): 2629—2635 | 10.1099/ijs.0.65149-0 |
| Goodfellow1977 | summary, general characteristics, enzymes, metabolites, utilisation | Rhodococcus erythropolis, Rhodococcus rubripertinctus, Rhodococcus terrae | 1977 |
Goodfellow, M.; Alderson, G. |
The Actinomycete-genus Rhodococcus: A Home for the 'rhodochrous' Complex. | Journal of General Microbiology | 100(1), page(s): 99—122 | 10.1099/00221287-100-1-99 |
| Goodwin1989 | summary, general characteristics, enzymes, antibiotics, utilisation | Helicobacter pylori, Helicobacter mustelae | 1989 |
Goodwin, C. S.; Armstrong, J. A.; Chilvers, T.; Peters, M.; Collins, M. D.; L., S. L. Y.; Mcconnell, W.; Harper, W. E. S. |
Transfer of Campylobacter pylori and Campylobacter mustelae to Helicobacter gen. nov. as Helicobacter pylori comb. nov. and Helicobacter mustelae comb. nov., Respectively. | International Journal of Systematic Bacteriology | 39(4), page(s): 397—405 | 10.1099/00207713-39-4-397 |
| Goris2001 | summary, general characteristics, enzymes, metabolites, utilisation | Ralstonia campinensis, Ralstonia metallidurans, Ralstonia basilensis | 2001 |
Goris, J.; Vos, P. De; Coenye, T.; Hoste, B.; Janssens, D.; Brim, H.; Diels, L.; Mergeay, M.; Kersters, K.; Vandamme, P. |
Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. | International Journal of Systematic and Evolutionary Microbiology | 51(5), page(s): 1773—1782 | 10.1099/00207713-51-5-1773 |
| Gossling1975 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Gemmiger formicilis | 1975 |
Gossling, J.; Moore, W. E. C. |
Gemmiger formicilis, n.gen., n.sp., an Anaerobic Budding Bacterium from Intestines. | International Journal of Systematic Bacteriology | 25(2), page(s): 202—207 | 10.1099/00207713-25-2-202 |
| Graves2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Listeria marthii | 2010 |
Graves, Lewis M.; Helsel, Leta O.; Steigerwalt, Arnold G.; Morey, Roger E.; Daneshvar, Maryam I.; Roof, Sherry E.; Orsi, Renato H.; Fortes, Esther D.; Milillo, Sara R.; den Bakker, Henk C.; Wiedmann, Martin; Swaminathan, Balasubramanian; Sauders, Brian D. |
Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest. | International Journal of Systematic and Evolutionary Microbiology | 60(6), page(s): 1280—1288 | 10.1099/ijs.0.014118-0 |
| Gray2018 | health, malignant edema | Clostridium sordelli | 2018 |
Gray, Sanjiv Fitz-Morris; Dieudonne, Beatrice Esther |
Clostridium sordelli causing malignant edema in a trauma patient: a case report and review of literature. | Pan African Medical Journal | 30, | 10.11604/pamj.2018.30.118.14156 |
| Green1983 | summary, general characteristics, enzymes, utilisation | Methylobacterium rhodinum, Methylobacterium radiotolerans, Methylobacterium mesophilicum | 1983 |
Green, P. N.; Bousfield, I. J. |
Emendation of Methylobacterium Patt, Cole, and Hanson 1976: Methylobacterium rhodinum (Heumann 1962) comb. nov. corrig.: Methylobacterium radiotolerans (Ito and Iizuka 1971) comb. nov. corrig.: and Methylobacterium mesophilicum (Austin and Goodfellow 1979) comb. nov. | International Journal of Systematic Bacteriology | 33(4), page(s): 875—877 | 10.1099/00207713-33-4-875 |
| Green1988 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Methylobacterium rhodesianum, Methylobacterium zatmanii, Methylobacterium fujisawaense | 1988 |
Green, P. N.; Bousfield, I. J.; D., Hood |
Three New Methylobacterium Species: M. rhodesianum sp. nov., M. zatmanii sp. nov., and M. fujisawaense sp. nov. | International Journal of Systematic Bacteriology | 38(1), page(s): 124—127 | 10.1099/00207713-38-1-124 |
| Green2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Methylorubrum populi, Methylorubrum zatmanii, Methylorubrum extorquens, Methylorubrum aminovorans, Methylorubrum thiocyanatum | 2018 |
Green, Peter N.; Ardley, Julie K. |
Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 68(9), page(s): 2727—2748 | 10.1099/ijsem.0.002856 |
| Greenwood1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Gardnerella vaginalis | 1980 |
Greenwood, J. R.; Pickett, M. J. |
Transfer of Haemophilus vaginalis Gardner and Dukes to a New Genus, Gardnerella: G. vaginalis (Gardner and Dukes) comb. nov. | International Journal of Systematic Bacteriology | 30(1), page(s): 170—178 | 10.1099/00207713-30-1-170 |
| Greetham2004 | summary, general characteristics, enzymes, metabolites, utilisation | Sutterella stercoricanis | 2004 |
Greetham, Hazel L.; Collins, Matthew D.; Gibson, Glenn R.; Giffard, Catriona; Falsen, Enevold; Lawson, Paul A. |
Sutterella stercoricanis sp. nov., isolated from canine faeces. | International Journal of Systematic and Evolutionary Microbiology | 54(5), page(s): 1581—1584 | 10.1099/ijs.0.63098-0 |
| Greipsson1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Hafnia alvei | 1983 |
Greipsson, S.; Priest, F. G. |
Numerical Taxonomy of Hafnia alvei. | International Journal of Systematic Bacteriology | 33(3), page(s): 470—475 | 10.1099/00207713-33-3-470 |
| Grimont1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Serratia plymuthica, Serratia odorifera | 1978 |
Grimont, P. A. D.; Grimont, F.; Richard, C.; Davis, B. R.; Steigerwalt, A. G.; Brenner, D. J. |
Deoxyribonucleic Acid Relatedness Between Serratia plymuthica and Other Serratia Species, with a Description of Serratia odorifera sp. nov. (Type Strain: ICPB 3995). | International Journal of Systematic Bacteriology | 28(4), page(s): 453—463 | 10.1099/00207713-28-4-453 |
| Grimont1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, food source | Serratia ficaria | 1979 |
Grimont, Patrick A. D.; Grimont, Francine; Starr, Mortimer P. |
Serratia ficaria sp. nov., a bacterial species associated with Smyrna figs and the fig wasp, Blastophaga psenes. | Current Microbiology | 2(5), page(s): 277—282 | 10.1007/bf02602859 |
| Grimont1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Cedecea davisae, Cedecea lapagei | 1981 |
Grimont, P. A. D.; Grimont, F.; Farmer, J. J.; Asbury, M. A. |
Cedecea davisae gen. nov., sp. nov. and Cedecea lapagei sp. nov., New Enterobacteriaceae from Clinical Specimens. | International Journal of Systematic Bacteriology | 31(3), page(s): 317—326 | 10.1099/00207713-31-3-317 |
| Grimont1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Ewingella americana | 1983 |
Grimont, P. A. D.; Farmer, J. J.; Grimont, F.; Asbury, M. A.; Brenner, D. J.; Deval, C. |
Ewingella americana gen. nov., sp. nov., a new Enterobacteriaceae isolated from clinical specimens. | Annales de l'Institut Pasteur / Microbiologie | 134(1), page(s): 39—52 | 10.1016/0769-2609(83)90102-3 |
| Grimont1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterobacter cancerogenus | 1989 |
Grimont, P. A. D.; Ageron, E. |
Enterobacter cancerogenus (Urosevi, 1966) Dickey and Zumoff 1988, a senior subjective synonym of Enterobacter taylorae Farmer et al. (1985). | Research in Microbiology | 140(6), page(s): 459—465 | 10.1016/0923-2508(89)90067-3 |
| Grisold2007 | antibiotics, blood infection | Gordonia terrae | 2007 |
Grisold, A. J.; Roll, P.; Hoenigl, M.; Feierl, G.; Vicenzi-Moser, R.; Marth, E. |
Isolation of Gordonia terrae from a patient with catheter-related bacteraemia. | Journal of Medical Microbiology | 56(12), page(s): 1687—1688 | 10.1099/jmm.0.47388-0 |
| Gruner1993 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, clinical sources | Brevibacterium epidermidis, Brevibacterium casei, Brevibacterium linens | 1993 |
Gruner, E.; Pfyffer, G. E.; von Graevenitz, A. |
Characterization of Brevibacterium spp. from clinical specimens. | Journal of Clinical Microbiology | 31(6), page(s): 1408—1412 | 10.1128/jcm.31.6.1408-1412.1993 |
| Guilhot2016 | summary, kwashiorkor | Anaeromassilibacillus senegalensis | 2016 |
Guilhot, E.; Alou, M. Tidjani; Diallo, A.; Raoult, D.; Khelaifia, S. |
Anaeromassilibacillus senegalensis gen. nov., sp. nov., isolated from the gut of a child with kwashiorkor. | New Microbes and New Infections | 12, page(s): 59—60 | 10.1016/j.nmni.2016.04.007 |
| Guinebretiere2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, health, food poisoning | Bacillus cytotoxicus | 2013 |
Guinebretiere, Marie-Hélene; Auger, Sandrine; Galleron, Nathalie; Contzen, Matthias; Sarrau, Benoit De; Buyser, Marie-Laure De; Lamberet, Gilles; Fagerlund, Annette; Granum, Per Einar; Lereclus, Didier; Vos, Paul De; Nguyen-The, Christophe; Sorokin, Alexei |
Bacillus cytotoxicus sp. nov. is a novel thermotolerant species of the Bacillus cereus Group occasionally associated with food poisoning. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/1), page(s): 31—40 | 10.1099/ijs.0.030627-0 |
| Gunthard1996 | antibiotics, clinical sources | Hafnia alvei | 1996 |
Gunthard, H.; Pennekamp, A. |
Clinical Significance of Extraintestinal Hafnia alvei Isolates from 61 Patients and Review of the Literature. | Clinical Infectious Diseases | 22(6), page(s): 1040—1045 | 10.1093/clinids/22.6.1040 |
| Gupta2018 | taxonomy | Mycobacterium aubagnense, Mycobacteroides abscessus, Mycolicibacterium insubricum, Mycolicibacterium cosmeticum, Mycobacterium terrae, Mycolicibacterium mageritense | 2018 |
Gupta, Radhey S.; Lo, Brian; Son, Jeen |
Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera. | Frontiers in Microbiology | 9, | 10.3389/fmicb.2018.00067 |
| Gupta2020 | taxonomy | Bacillus, Robertmurraya kyonggiensis | 2020 |
Gupta, Radhey S.; Patel, Sudip; Saini, Navneet; Chen, Shu |
Erratum: Robust demarcation of seventeen distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for emended genus Bacillus limiting it only to the members of the subtilis and cereus clades of species. | International Journal of Systematic and Evolutionary Microbiology | 70(12), page(s): 6531—6533 | 10.1099/ijsem.0.004613 |
| Gupta2020a | taxonomy | Rossellomorea vietnamensis, Robertmurraya andreesenii, Robertmurraya kyonggiensis, Priestia koreensis, Lederbergia galactosidilyticus, Lederbergia lentus, Robertmurraya kyonggiensis, Weizmannia coagulans, Neobacillus pocheonensis | 2020 |
Gupta, Radhey S.; Patel, Sudip; Saini, Navneet; Chen, Shu |
Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species. | International Journal of Systematic and Evolutionary Microbiology | 70(11), page(s): 5753—5798 | 10.1099/ijsem.0.004475 |
| vanGylswyk1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Eubacterium cellulosolvens | 1986 |
Gylswyk, N. O. Van; Toorn, J. J. T. K. Van Der |
Description and Designation of a Neotype Strain of Eubacterium cellulosolvens (Cillobacterium cellulosolvens Bryant, Small, Bouma and Robinson) Holdeman and Moore. | International Journal of Systematic Bacteriology | 36(2), page(s): 275—277 | 10.1099/00207713-36-2-275 |
| Haas2020 | taxonomy | Enterocloster aldenensis, Enterocloster asparagiformis, Enterocloster bolteae, Enterocloster citroniae, Enterocloster clostridioformis, Enterocloster lavalensis, Lacrimispora aerotolerans, Lacrimispora saccharolytica, Lacrimispora indolis, Lacrimispora sphenoides | 2020 |
Haas, Kelly N.; Blanchard, Jeffrey L. |
Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa. | International Journal of Systematic and Evolutionary Microbiology | 70(1), page(s): 23—34 | 10.1099/ijsem.0.003698 |
| Hadjadj2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Desnuesiella massiliensis | 2016 |
Hadjadj, L.; Alou, M. Tidjani; Sokhna, C.; Lagier, J.-C.; Raoult, D.; Rolain, J.-M. |
Genome sequence and description of Desnuesiella massiliensis gen. nov., sp. nov. a new member of family Clostridiaceae. | New Microbes and New Infections | 11, page(s): 84—90 | 10.1016/j.nmni.2016.03.003 |
| Hahnke2016 | summary, general characteristics, enzymes, metabolites, utilisation | Prevotella oris, Proteiniphilum saccharofermentans, Petrimonas mucosa, Fermentimonas caenicola, Cytophaga hutchinsonii, Empedobacter brevis, Dysgonomonas mossii, Porphyromonas bennonis, Prevotella marshii, Prevotella baroniae | 2016 |
Hahnke, Sarah; Langer, Thomas; Koeck, Daniela E.; Klocke, Michael |
Description of Proteiniphilum saccharofermentans sp. nov., Petrimonas mucosa sp. nov. and Fermentimonas caenicola gen. nov., sp. nov., isolated from mesophilic laboratory-scale biogas reactors, and emended description of the genus Proteiniphilum. | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1466—1475 | 10.1099/ijsem.0.000902 |
| Hall1922 | summary, general characteristics | Paraclostridium bifermentans, Clostridium botulinum, Clostridium novyi A, Clostridium sporogenes, Clostridium butyricum, Hathewaya histolytica, Clostridium chauvoei, Clostridium septicum, Clostridium fallax, Clostridium tetani, Lacrimispora sphenoides, Clostridium tertium | 1922 |
Hall, I. C. |
Differentiation and identification of the sporulating anaerobes. | Journal of Infectious Diseases | 30(5), page(s): 445—504 | 10.1093/infdis/30.5.445 |
| Hall1927 | summary, general characteristics, acid from carbohydrates, edema, health | Clostridium Sordellii | 1927 |
Hall, I. C.; Scott, J. P. |
Bacillus Sordellii, A Cause of Malignant Edema in Man. | Journal of Infectious Diseases | 41(5), page(s): 329—355 | 10.1093/infdis/41.5.329 |
| Hall2002 | summary, general characteristics, enzymes, utilisation, metabolites, clinical sources | Actinomyces cardiffensis | 2002 |
Hall, Val; Collins, Mattew D.; Hutson, Roger; Falsen, Enevold; Duerden, Brian I. |
Actinomyces cardiffensis sp. nov. from Human Clinical Sources. | Journal of Clinical Microbiology | 40(9), page(s): 3427—3431 | 10.1128/jcm.40.9.3427-3431.2002 |
| Hall2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Varibaculum cambriense | 2003 |
Hall, Val; Collins, Matthew D.; Lawson, Paul A.; Hutson, Roger A.; Falsen, Enevold; Inganas, Elisabeth; Duerden, Brian |
Characterization of Some Actinomyces -Like Isolates from Human Clinical Sources: Description of Varibaculum cambriensis gen. nov., sp. nov. | Journal of Clinical Microbiology | 41(2), page(s): 640—644 | 10.1128/jcm.41.2.640-644.2003 |
| Hameed2015 | summary, general characteristics, enzymes, metabolites, utilisation | Oricola cellulosilytica, Mesorhizobium loti, Phyllobacterium myrsinacearum | 2015 |
Hameed, Asif; Shahina, Mariyam; Lai, Wei-An; Lin, Shih-Yao; Young, Li-Sen; Liu, You-Cheng; Hsu, Yi-Han; Young, Chiu-Chung |
Oricola cellulosilytica gen. nov., sp. nov., a cellulose-degrading bacterium of the family Phyllobacteriaceae isolated from surface seashore water, and emended descriptions of Mesorhizobium loti and Phyllobacterium myrsinacearum. | Antonie van Leeuwenhoek | 107(3), page(s): 759—771 | 10.1007/s10482-014-0370-6 |
| Han2003 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Roseomonas mucosa, Roseomonas gilardii subsp rosea | 2003 |
Han, Xiang Y.; Pham, Audrey S.; Tarrand, Jeffrey J.; Rolston, Kenneth V.; Helsel, Leta O.; Levett, Paul N. |
Bacteriologic characterization of 36 strains of Roseomonas species and proposal of Roseomonas mucosa sp nov and Roseomonas gilardii subsp rosea subsp nov. | American Journal of Clinical Pathology | 120(2), page(s): 256—264 | 10.1309/731vvgvckk351y4j |
| Han2005 | antibiotics | Brevundimonas diminuta | 2005 |
Han, X. Y. |
Brevundimonas diminuta infections and its resistance to fluoroquinolones. | Journal of Antimicrobial Chemotherapy | 55(6), page(s): 853—859 | 10.1093/jac/dki139 |
| Han2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Olsenella faecalis | 2019 |
Han, Kook-Il; Lee, Keun Chul; Eom, Mi Kyung; Kim, Ji-Sun; Suh, Min Kuk; Park, Seung-Hwan; Lee, Ju Huck; Kang, Se Won; Park, Jam-Eon; Oh, Byeong Seob; Yu, Seung Yeob; Choi, Seung-Hyeon; Lee, Dong Ho; Yoon, Hyuk; Kim, Byung-Yong; Yang, Seung-Jo; Lee, Jung-Sook |
Olsenella faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 69(8), page(s): 2323—2328 | 10.1099/ijsem.0.003469 |
| Han2020 | summary, general characteristics, enzymes | Senegalimassilia faecalis, Senegalimassilia anaerobia | 2020 |
Han, Kook-Il; Kim, Ji-Sun; Lee, Keun Chul; Eom, Mi Kyung; Suh, Min Kuk; Kim, Han Sol; Park, Seung-Hwan; Lee, Ju Huck; Kang, Se Won; Park, Jam-Eon; Oh, Byeong Seob; Yu, Seung Yeob; Choi, Seung-Hyeon; Lee, Dong Ho; Yoon, Hyuk; Kim, Byung-Yong; Lee, Je Hee; Lee, Jung-Sook |
Senegalimassilia faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces, and emended description of the genus Senegalimassilia. | International Journal of Systematic and Evolutionary Microbiology | 70(3), page(s): 1684—1690 | 10.1099/ijsem.0.003958 |
| Handley1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity, throat | Streptococcus cristatus | 1991 |
Handley, P.; Coykendall, A.; Beighton, D.; Hardie, J. M.; Whiley, R. A. |
Streptococcus crista sp. nov., a Viridans Streptococcus with Tufted Fibrils, Isolated from the Human Oral Cavity and Throat. | International Journal of Systematic Bacteriology | 41(4), page(s): 543—547 | 10.1099/00207713-41-4-543 |
| Hansen1970 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus acidophilus | 1970 |
Hansen, P. A.; Mocquot, G. |
Lactobacillus acidophilus (Moro) comb. nov. | International Journal of Systematic Bacteriology | 20(3), page(s): 325—327 | 10.1099/00207713-20-3-325 |
| HantsisZacharov2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, dairy foods | Chryseobacterium oranimense | 2008 |
Hantsis-Zacharov, E.; Shaked, T.; Senderovich, Y.; Halpern, M. |
Chryseobacterium oranimense sp. nov., a psychrotolerant, proteolytic and lipolytic bacterium isolated from raw cow's milk. | International Journal of Systematic and Evolutionary Microbiology | 58(11), page(s): 2635—2639 | 10.1099/ijs.0.65819-0 |
| Harms1998 | summary, general characteristics, metabolites, utilisation | Tissierella creatinophila | 1998 |
Harms, C.; Schleicher, A.; Collins, M. D.; Andreesen, J. R. |
Tissierella creatinophila sp. nov., a Gram-positive, anaerobic, non-spore-forming, creatinine-fermenting organism. | International Journal of Systematic Bacteriology | 48(3), page(s): 983—993 | 10.1099/00207713-48-3-983 |
| Harrison1963 | summary, general characteristics, metabolites, antibiotics, utilisation | Bacteroides hypermegas | 1963 |
Harrison, A. P.; Hansen, P. A. |
Bacteroides hypermegas nov. spec. | Antonie van Leeuwenhoek | 29(1), page(s): 22—28 | 10.1007/bf02046035 |
| Harwich2012 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, metabolites | Sneathia amnii, Sneathia vaginalis | 2012 |
Harwich, Michael D.; Serrano, Myrna G.; Fettweis, Jennifer M.; Alves, João M. P.; Reimers, Mark A.; Buck, Gregory A.; Jefferson, Kimberly K.; Vaginal Microbiome Consortium (additional members) |
Genomic sequence analysis and characterization of Sneathia amnii sp. nov. | BMC Genomics | 13(S8), page(s): S4 | 10.1186/1471-2164-13-s8-s4 |
| Hata2016 | summary | Atlantibacter hermannii, Atlantibacter subterranea | 2016 |
Hata, Hiroyuki; Natori, Tatsuya; Mizuno, Takuya; Kanazawa, Izumi; Eldesouky, Ibrahim; Hayashi, Masahiro; Miyata, Machiko; Fukunaga, Hajime; Ohji, Shoko; Hosoyama, Akira; Aono, Eiji; Yamazoe, Atsushi; Tsuchikane, Keiko; Fujita, Nobuyuki; Ezaki, Takayuki |
Phylogenetics of family Enterobacteriaceae and proposal to reclassify Escherichia hermannii and Salmonella subterranea as Atlantibacter hermannii and Atlantibacter subterranea gen. nov., comb. nov. | Microbiology and Immunology | 60(5), page(s): 303—311 | 10.1111/1348-0421.12374 |
| Hayashi2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides coprophilus | 2007 |
Hayashi, Hidenori; Shibata, Kensaku; Bakir, Mohammad Abdul; Sakamoto, Mitsuo; Tomita, Shinichi; Benno, Yoshimi |
Bacteroides coprophilus sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 57(6), page(s): 1323—1326 | 10.1099/ijs.0.64979-0 |
| Hayashi2007a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Prevotella copri, Prevotella stercorea | 2007 |
Hayashi, Hidenori; Shibata, Kensaku; Sakamoto, Mitsuo; Tomita, Shinichi; Benno, Yoshimi |
Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 57(5), page(s): 941—946 | 10.1099/ijs.0.64778-0 |
| Hayward1959 | summary, general characteristics, enzymes, acid from carbohydrates | Desulfovibrio desulfuricans | 1959 |
Hayward, Hugh R.; Stadtman, Thressa C. |
Anaerobic Degradation of Choline I. , Vibrio cholinicus n. sp. | Journal of bacteriology | 78(4), page(s): 557—561 | 10.1128/jb.78.4.557-561.1959 |
| Heath1958 | enzymes | Lactobacillus plantarum | 1958 |
Heath, E. C.; Hurwitz, J.; Horecker, B. L.; Ginsburg, A. |
Pentose fermentation by Lactobacillus plantarum. I. The cleavage of xylulose 5-phosphate by phosphoketolase. | The Journal of biological chemistry | 231, page(s): 1009—1029 | 13539033 PMID |
| Hedberg2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Lachnoanaerobaculum umeaense, Lachnoanaerobaculum orale, Lachnoanaerobaculum saburreum | 2012 |
Hedberg, Maria E.; Moore, Edward R. B.; Svensson-Stadler, Liselott; Hörstedt, Per; Baranov, Vladimir; Hernell, Olle; Wai, Sun Nyunt; Hammarström, Sten; Hammarström, Marie-Louise |
Lachnoanaerobaculum gen. nov., a new genus in the Lachnospiraceae : characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from the human small intestine, and Lachnoanaerobaculum orale sp. nov., isolated from saliva, and reclassification of Eubacterium saburreum (Prevot 1966) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt/11), page(s): 2685—2690 | 10.1099/ijs.0.033613-0 |
| Hedi2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Halanaerobaculum tunisiense | 2008 |
Hedi, Abdeljabbar; Fardeau, Marie-Laure; Sadfi, Najla; Boudabous, Abdellatif; Ollivier, Bernard; Cayol, Jean-Luc |
Characterization of Halanaerobaculum tunisiense gen. nov., sp. nov., a new halophilic fermentative, strictly anaerobic bacterium isolated from a hypersaline lake in Tunisia. | Extremophiles | 13(2), page(s): 313—319 | 10.1007/s00792-008-0218-y |
| Hellinger1947 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium aurantibutyricum | 1947 |
Hellinger, E. |
Clostridium aurantibutyricum (n.sp.): A Pink Butyric Acid Clostridium. | Journal of General Microbiology | 1(2), page(s): 203—210 | 10.1099/00221287-1-2-203 |
| Henssge2009 | summary, general characteristics, enzymes, acid from carbohydrates | Actinomyces naeslundii, Actinomyces oris, Actinomyces johnsonii | 2009 |
Henssge, U.; Do, T.; Radford, D. R.; Gilbert, S. C.; Clark, D.; Beighton, D. |
Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963. | International Journal of Systematic and Evolutionary Microbiology | 59(3), page(s): 509—516 | 10.1099/ijs.0.000950-0 |
| Heyndrickx1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aneurinibacillus thermoaerophilus, Aneurinibacillus aneurinilyticus, Aneurinibacillus migulanus | 1997 |
Heyndrickx, M.; Lebbe, L.; Vancanneyt, M.; Kersters, K.; Vos, P. De; Logan, N. A.; Forsyth, G.; Nazli, S.; Ali, N.; Berkeley, R. C. W. |
A Polyphasic Reassessment of the Genus Aneurinibacillus, Reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb, nov., and Emended Descriptions of A. aneurinilyticus corrig., A. migulanus, and A. thermoaerophilus. | International Journal of Systematic and Evolutionary Microbiology | 47(3), page(s): 808—817 | 10.1099/00207713-47-3-808 |
| Heyndrickx1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Virgibacillus proomii, Virgibacillus pantothenticus | 1999 |
Heyndrickx, M.; Lebbe, L.; Kersters, K.; Hoste, B.; Wachter, R. De; Vos, P. De; Forsyth, G.; Logan, N. A. |
Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998. | International Journal of Systematic and Evolutionary Microbiology | 49(3), page(s): 1083—1090 | 10.1099/00207713-49-3-1083 |
| Heyrman2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Arthrobacter castelli, Arthrobacter parietis, Arthrobacter pigmenti | 2005 |
Heyrman, Jeroen; Verbeeren, Jens; Schumann, Peter; Swings, Jean; Vos, Paul De |
Six novel Arthrobacter species isolated from deteriorated mural paintings. | International Journal of Systematic and Evolutionary Microbiology | 55(4), page(s): 1457—1464 | 10.1099/ijs.0.63358-0 |
| Heyrman2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus muralis, Bacillus simplex | 2005 |
Heyrman, J. |
Study of mural painting isolates, leading to the transfer of 'Bacillus maroccanus' and 'Bacillus carotarum' to Bacillus simplex, emended description of Bacillus simplex, re-examination of the strains previously attributed to 'Bacillus macroides' and description of Bacillus muralis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 119—131 | 10.1099/ijs.0.63221-0 |
| Hickman1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, diarrhoea | Vibrio hollisae | 1982 |
Hickman, F. W.; Farmer, J. J.; Hollis, D. G.; Fanning, G. R.; Steigerwalt, A. G.; Weaver, R. E.; Brenner, D. J. |
Identification of Vibrio hollisae sp. nov. from patients with diarrhea. | Journal of Clinical Microbiology | 15, page(s): 395—401 | 10.1128/jcm.15.3.395-401.1982 |
| Hickman1982a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Proteus penneri | 1982 |
Hickman, F. W.; Steigerwalt, A. G.; Farmer, J. J.; Brenner, D. J. |
Identification of Proteus penneri sp. nov., formerly known as Proteus vulgaris indole negative or as Proteus vulgaris biogroup 1. | Journal of Clinical Microbiology | 15, page(s): 1097—1102 | 10.1128/jcm.15.6.1097-1102.1982 |
| HickmanBrenner1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Providencia rustigianii | 1983 |
Hickman-Brenner, F. W.; Farmer, J. J.; Steigerwalt, A. G.; Brenner, D. J. |
Providencia rustigianii: a new species in the family Enterobacteriaceae formerly known as Providencia alcalifaciens biogroup 3. | Journal of Clinical Microbiology | 17, page(s): 1057—1060 | 10.1128/jcm.17.6.1057-1060.1983 |
| HickmanBrenner1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Moellerella wisconsensis | 1984 |
Hickman-Brenner, F. W.; Huntley-Carter, G. P.; Saitoh, Y.; Steigerwalt, A. G.; Farmer, J. J.; Brenner, D. J. |
Moellerella wisconsensis, a new genus and species of Enterobacteriaceae found in human stool specimens. | Journal of Clinical Microbiology | 19(4), page(s): 460—463 | 10.1128/jcm.19.4.460-463.1984 |
| HickmanBrenner1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Leminorella grimontii, Leminorella richardii | 1985 |
Hickman-Brenner, F. W.; Vohra, M. P.; Huntley-Carter, G. P.; Fanning, G. R.; Lowery, V. A.; Brenner, D. J.; Farmer, J. J. |
Leminorella, a new genus of Enterobacteriaceae: identification of Leminorella grimontii sp. nov. and Leminorella richardii sp. nov. found in clinical specimens. | Journal of Clinical Microbiology | 21(2), page(s): 234—239 | 10.1128/jcm.21.2.234-239.1985 |
| HickmanBrenner1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, diarrhoea | Aeromonas veronii | 1987 |
Hickman-Brenner, F. W.; MacDonald, K. L.; Steigerwalt, A. G.; Fanning, G. R.; Brenner, D. J.; Farmer, J. J. |
Aeromonas veronii, a new ornithine decarboxylase-positive species that may cause diarrhea. | Journal of Clinical Microbiology | 25(5), page(s): 900—906 | 10.1128/jcm.25.5.900-906.1987 |
| Hiippala2020 | summary, general characteristics | Odoribacter splanchnicus | 2020 |
Hiippala, Kaisa; Barreto, Gonçalo; Burrello, Claudia; Diaz-Basabe, Angelica; Suutarinen, Maiju; Kainulainen, Veera; Bowers, Jolene R.; Lemmer, Darrin; Engelthaler, David M.; Eklund, Kari K.; Facciotti, Federica; Satokari, Reetta |
Novel Odoribacter splanchnicus Strain and Its Outer Membrane Vesicles Exert Immunoregulatory Effects in vitro. | Frontiers in Microbiology | 11, | 10.3389/fmicb.2020.575455 |
| Hill1975 | gut microbiome | compilation | 1975 |
Hill, M. J.; Drasar, B. S. |
The normal colonic bacterial flora. | Gut | 16, page(s): 318—323 | 10.1136/gut.16.4.318 |
| Himelbloom1989 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium methylpentosum | 1989 |
Himelbloom, Brian H.; Canale-Parola, Ercole |
Clostridium methylpentosum sp. nov.: a ring-shaped intestinal bacterium that ferments only methylpentoses and pentoses. | Archives of Microbiology | 151(4), page(s): 287—293 | 10.1007/bf00406553 |
| Hippe1999 | summary, general characteristics, acid from carbohydrates, metabolites | Formivibrio citricus, Propionivibrio dicarboxylicus, Anaerobiospirillum thomasii, Succinimonas amylolytica, Succinivibrio dextrinosolvens | 1999 |
Hippe, Hans; Hagelstein, Anja; Kramer, Ina; Swiderski, Jolantha; Stackebrandt, Erko |
Phylogenetic analysis of Formivibrio citricus, Propionivibrio dicarboxylicus, Anaerobiospirillum thomasii, Succinimonas amylolytica and Succinivibrio dextrinosolvens and proposal of Succinivibrionaceae fam. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 779—782 | 10.1099/00207713-49-2-779 |
| Hirsch1985 | water source | Blastobacter aggregatus, Blastobacter capsulatus, Blastobacter denitrificans | 1985 |
Hirsch, Peter; Müller, Michael |
Blastobacter aggregatus sp. nov., Blastobacter capsulatus sp. nov., and Blastobacter denitrificans sp. nov., New Budding Bacteria from Freshwater Habitats. | Systematic and Applied Microbiology | 6(3), page(s): 281—286 | 10.1016/s0723-2020(85)80032-1 |
| Hoecke2013 | antibiotics, blood infection | Actinomyces urogenitalis | 2013 |
Hoecke, F. Van; Beuckelaers, E.; Lissens, P.; Boudewijns, M. |
Actinomyces urogenitalis Bacteremia and Tubo-Ovarian Abscess after an In Vitro Fertilization (IVF) Procedure. | Journal of Clinical Microbiology | 51(12), page(s): 4252—4254 | 10.1128/jcm.02142-13 |
| Hoffmann2003 | genetics, taxonomy | Enterobacter cloacae | 2003 |
Hoffmann, Harald; Roggenkamp, Andreas |
Population Genetics of the Nomenspecies Enterobacter cloacae. | Applied and Environmental Microbiology | 69(9), page(s): 5306—5318 | 10.1128/aem.69.9.5306-5318.2003 |
| Hoffmann2005 | summary, general characteristics, enzymes, metabolites, utilisation | Enterobacter hormaechei subsp. Oharae, Enterobacter hormaechei subsp. hormaechei, Enterobacter hormaechei subsp. steigerwaltii | 2005 |
Hoffmann, Harald; Stindl, Sibylle; Ludwig, Wolfgang; Stumpf, Anita; Mehlen, Andre; Monget, Daniel; Pierard, Denis; Ziesing, Stefan; Heesemann, Jürgen; Roggenkamp, Andreas; Schleifer, Karl H. |
Enterobacter hormaechei subsp. oharae subsp. nov., E. hormaechei subsp. hormaechei comb. nov., and E. hormaechei subsp. steigerwaltii subsp. nov., Three New Subspecies of Clinical Importance. | Journal of Clinical Microbiology | 43(7), page(s): 3297—3303 | 10.1128/jcm.43.7.3297-3303.2005 |
| Hoffmann2005a | summary, general characteristics, enzymes, metabolites, utilisation | Enterobacter asburiae, Enterobacter cloacae subsp. dissolvens, Enterobacter kobei | 2005 |
Hoffmann, Harald; Stindl, Sibylle; Ludwig, Wolfgang; Stumpf, Anita; Mehlen, André; Heesemann, Jürgen; Monget, Daniel; Schleifer, Karl H.; Roggenkamp, Andreas |
Reassignment of Enterobacter dissolvens to Enterobacter cloacae as E. cloacae subspecies dissolvens comb. nov. and emended description of Enterobacter asburiae and Enterobacter kobei. | Systematic and Applied Microbiology | 28(3), page(s): 196—205 | 10.1016/j.syapm.2004.12.010 |
| Hoffmann2005b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Enterobacter ludwigii | 2005 |
Hoffmann, Harald; Stindl, Sibylle; Stumpf, Anita; Mehlen, Andre; Monget, Daniel; Heesemann, Jürgen; Schleifer, Karl H.; Roggenkamp, Andreas |
Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance. | Systematic and Applied Microbiology | 28(3), page(s): 206—212 | 10.1016/j.syapm.2004.12.009 |
| Hofstad2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, gall bladder infection | Dysgonomonas gadei, Dysgonomonas capnocytophagoides | 2000 |
Hofstad, T.; Olsen, I.; Eribe, E. R.; Falsen, E.; Collins, M. D.; Lawson, P. A. |
Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3). | International Journal of Systematic and Evolutionary Microbiology | 50(6), page(s): 2189—2195 | 10.1099/00207713-50-6-2189 |
| Holdeman1971 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Clostridium ramosum, Erysipelatoclostridium ramosum | 1971 |
Holdeman, L. V.; E. P., Cato; Moore, W. E. C. |
Clostridium ramosum (Vuillemin) comb. nov.: Emended Description and Proposed Neotype Strain. | International Journal of Systematic Bacteriology | 21(1), page(s): 35—39 | 10.1099/00207713-21-1-35 |
| Holdeman1971a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Eubacterium contortum | 1971 |
Holdeman, L. V.; E. P., Cato.; Moore, W. E. C. |
Eubacterium contortum (Prevot) comb. nov.: Emendation of Description and Designation of the Type Strain. | International Journal of Systematic Bacteriology | 21(4), page(s): 304—306 | 10.1099/00207713-21-4-304 |
| Holdeman1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Coprococcus catus, Coprococcus comes, Coprococcus eutactus, Ruminococcus callidus, Ruminococcus torques, Blautia hansenii, Streptococcus constellatus subsp. constellatus, Streptococcus intermedius, Gemella morbillorum, Bacteroides eggerthii, Eubacterium biforme, Lachnospira eligens, Dorea formicigenerans, Anaerobutyricum hallii, Lactobacillus rogosae, Tyzzerella nexilis | 1974 |
Holdeman, L. V.; Moore, W. E. C. |
New Genus, Coprococcus, Twelve New Species, and Emended Descriptions of Four Previously Described Species of Bacteria from Human Feces. | International Journal of Systematic Bacteriology | 24(2), page(s): 260—277 | 10.1099/00207713-24-2-260 |
| Holdeman1977 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Bacteroides disiens, Bacteroides bivius | 1977 |
Holdeman, L. V.; Johnson, J. L. |
Bacteroides disiens sp. nov. and Bacteroides bivius sp. nov. from Human Clinical Infections. | International Journal of Systematic Bacteriology | 27(4), page(s): 337—345 | 10.1099/00207713-27-4-337 |
| Holdeman1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Eubacterium timidum, Eubacterium brachy, Eubacterium nodatum | 1980 |
Holdeman, L. V.; E. P., Cato; Burmeister, J. A.; Moore, W. E. C. |
Descriptions of Eubacterium timidum sp. nov., Eubacterium brachy sp. nov., and Eubacterium nodatum sp. nov. Isolated from Human Periodontitis. | International Journal of Systematic Bacteriology | 30(1), page(s): 163—169 | 10.1099/00207713-30-1-163 |
| Holdeman1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Bacteroides oris, Bacteroides buccae | 1982 |
Holdeman, L. V.; Moore, W. E. C.; Churn, P. J.; Johnson, J. L. |
Bacteroides oris and Bacteroides buccae New Species from Human Periodontitis and Other Human Infections. | International Journal of Systematic Bacteriology | 32(1), page(s): 125—131 | 10.1099/00207713-32-1-125 |
| Hollis1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Tatumella ptyseos | 1981 |
Hollis, D. G.; Hickman, F. W.; Fanning, G. R.; Farmer, J. J.; Weaver, R. E.; Brenner, D. J. |
Tatumella ptyseos gen. nov., sp. nov., a member of the family Enterobacteriaceae found in clinical specimens. | Journal of Clinical Microbiology | 14(1), page(s): 79—88 | 10.1128/jcm.14.1.79-88.1981 |
| Holmes1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Ochrobactrum anthropi | 1988 |
Holmes, B.; Popoff, M.; Kiredjian, M.; Kersters, K. |
Ochrobactrum anthropi gen. nov., sp. nov. from Human Clinical Specimens and Previously Known as Group Vd. | International Journal of Systematic Bacteriology | 38(4), page(s): 406—416 | 10.1099/00207713-38-4-406 |
| Holmstrom2004 | summary, general characteristics, enzymes, metabolites, utilisation | Subdoligranulum variabile | 2004 |
Holmstrøm, Kim; Collins, Matthew D.; Møller, Trine; Falsen, Enevold; Lawson, Paul A. |
Subdoligranulum variabile gen. nov., sp. nov. from human feces. | Anaerobe | 10(3), page(s): 197—203 | 10.1016/j.anaerobe.2004.01.004 |
| Hormaeche1958 | summary, general characteristics, acid from carbohydrates | Klebsiella aerogenes, Klebsiella pneumoniae, Klebsiella cloacae | 1958 |
Hormaeche, E.; Edwards, P. R. |
Observations on the genus Aerobacter with a description of two species. | International Bulletin of Bacteriological Nomenclature and Taxonomy | 8(2), page(s): 111—116 | 10.1099/0096266x-8-2-111 |
| Horn1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium disporicum | 1987 |
Horn, N. |
Clostridium disporicum sp. nov., a Saccharolytic Species Able to Form Two Spores per Cell, Isolated from a Rat Cecum. | International Journal of Systematic Bacteriology | 37(4), page(s): 398—401 | 10.1099/00207713-37-4-398 |
| Hoshina1962 | summary, general characteristics, metabolites, utilisation | Paracolobactrum Anguillimortiferum | 1962 |
Hoshina, Toshikazu |
On a New Bacterium, Paracolobactrum Anguillimortiferum n. sp. | Nippon Suisan Gakkaishi | 28(2), page(s): 162—164 | 10.2331/suisan.28.162 |
| Hosny2016 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Clostridium phoceensis | 2016 |
Hosny, M.; Benamar, S.; Durand, G.; Armstrong, N.; Michelle, C.; Cadoret, F.; Scola, B. La; Cassir, N. |
Description of Clostridium phoceensis sp. nov., a new species within the genus Clostridium. | New Microbes and New Infections | 14, page(s): 85—92 | 10.1016/j.nmni.2016.09.008 |
| Hosny2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium pacaense | 2019 |
Hosny, M.; Abdallah, R. Abou; Khalil, J. Bou; Fontanini, A.; Baptiste, E.; Armstrong, N.; Scola, B. La |
Clostridium pacaense: a new species within the genus Clostridium. | New Microbes and New Infections | 28, page(s): 6—10 | 10.1016/j.nmni.2018.12.003 |
| HovindHougen1982 | summary, general characteristics, enzymes | Brachyspira aalborgi | 1982 |
Hovind-Hougen, K.; Birch-Andersen, A.; Henrik-Nielsen, R.; Orholm, M.; Pedersen, J. O.; Teglbjaerg, P. S.; Thaysen, E. H. |
Intestinal spirochetosis: morphological characterization and cultivation of the spirochete Brachyspira aalborgi gen. nov., sp. nov. | Journal of Clinical Microbiology | 16, page(s): 1127—1136 | 10.1128/jcm.16.6.1127-1136.1982 |
| Hoyles2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Actinomyces canis | 2000 |
Hoyles, L.; Falsen, E.; Foster, G.; P, C.; Greko, C.; Collins, M. D. |
Actinomyces canis sp. nov., isolated from dogs. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1547—1551 | 10.1099/00207713-50-4-1547 |
| Hoyles2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium scardovii | 2002 |
Hoyles, L. |
Bifidobacterium scardovii sp. nov., from human sources. | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 995—999 | 10.1099/ijs.0.02065-0 |
| Hoyles2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Mobiluncus curtisii | 2004 |
Hoyles, Lesley; Collins, Matthew D.; Falsen, Enevold; Nikolaitchouk, Natalia; McCartney, Anne L. |
Transfer of Members of the Genus Falcivibrio to the Genus Mobiluncus, and Emended Description of the Genus Mobiluncus. | Systematic and Applied Microbiology | 27(1), page(s): 72—83 | 10.1078/0723-2020-00260 |
| Hu2015 | health, drug resistance | Achromobacter xylosoxidans | 2015 |
Hu, Yongfei; Zhu, Yuying; Ma, Yanan; Liu, Fei; Lu, Na; Yang, Xi; Luan, Chunguang; Yi, Yong; Zhu, Baoli |
Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans. | Antimicrobial Agents and Chemotherapy | 59, page(s): 1152—1161 | 10.1128/AAC.04260-14 |
| Hu2021 | fermented foods | Bacillus pumilus, Bacillus licheniformis, Bacillus cereus, Bacillus subtilis | 2021 |
Hu, Qiao; Fang, Yuwen; Zhu, Jiajia; Xu, Wenjiao; Zhu, Kui |
Characterization of Bacillus Species from Market Foods in Beijing, China. | Processes | 9(5), page(s): 866 | 10.3390/pr9050866 |
| Hugenholtz1994 | taxonomy | Bradyrhizobium denitrificans | 1994 |
Hugenholtz, Philip; Stackebrandt, Erko; Fuerst, John A. |
A Phylogenetic Analysis of the Genus Blastobacter with a View to its Future Reclassification. | Systematic and Applied Microbiology | 17(1), page(s): 51—57 | 10.1016/s0723-2020(11)80031-7 |
| Hugh1961 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudomonas maltophilia | 1961 |
Hugh, R.; Ryschenkow, E. |
Pseudomonas maltophilia, an Alcaligenes-like Species. | Journal of General Microbiology | 26(1), page(s): 123—132 | 10.1099/00221287-26-1-123 |
| Hugon2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Alistipes obesi | 2013 |
Hugon, Perrine; Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Rivet, Romain; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov. | Standards in Genomic Sciences | 7(3), page(s): 427—439 | 10.4056/sigs.3336746 |
| Hugon2013a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Brevibacillus massiliensis | 2013 |
Hugon, Perrine; Mishra, Ajay Kumar; Lagier, Jean-Christophe; Nguyen, Thi Thien; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Brevibacillus massiliensis sp. nov. | Standards in Genomic Sciences | 8(1), page(s): 1—14 | 10.4056/sigs.3466975 |
| Hugon2013b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Kallipyga massiliensis | 2013 |
Hugon, Perrine; Ramasamy, Dhamodharan; Robert, Catherine; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. | Standards in Genomic Sciences | 8(3), page(s): 500—515 | 10.4056/sigs.4047997 |
| Huys2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, diarrhoea | Aeromonas dhakensis, Aeromonas hydrophila subsp. hydrophila | 2002 |
Huys, G. |
Aeromonas hydrophila subsp. dhakensis subsp. nov., isolated from children with diarrhoea in Bangladesh, and extended description of Aeromonas hydrophila subsp. hydrophila (Chester 1901) Stanier 1943 (Approved Lists 1980). | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 705—712 | 10.1099/ijs.0.01844-0 |
| Huys2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, diarrhoea | Escherichia albertii | 2003 |
Huys, Geert; Cnockaert, Margo; Janda, J. Michael; Swings, Jean |
Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 807—810 | 10.1099/ijs.0.02475-0 |
| Igbinosa2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Aeromonas bestiarum, Aeromonas caviae, Aeromonas enteropelogenes, Aeromonas eucrenophila, Aeromonas hydrophila subsp. hydrophila, Aeromonas jandaei, Aeromonas media, Aeromonas sobria, Aeromonas trota, Aeromonas veronii | 2012 |
Igbinosa, Isoken H.; Igumbor, Ehimario U.; Aghdasi, Farhad; Tom, Mvuyo; Okoh, Anthony I. |
Emerging Aeromonas Species Infections and Their Significance in Public Health. | The Scientific World Journal | 2012, page(s): 1—13 | 10.1100/2012/625023 |
| Iino2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food source (clam) | Oscillibacter valericigenes | 2007 |
Iino, Takao; Mori, Koji; Tanaka, Kenji; Suzuki, Ken-ichiro; Harayama, Shigeaki |
Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam. | International Journal of Systematic and Evolutionary Microbiology | 57(8), page(s): 1840—1845 | 10.1099/ijs.0.64717-0 |
| Ikeyama2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Amedibacterium intestinale, Amedibacillus dolichus | 2020 |
Ikeyama, Nao; Toyoda, Atsushi; Morohoshi, Sho; Kunihiro, Tadao; Murakami, Takumi; Mori, Hiroshi; Iino, Takao; Ohkuma, Moriya; Sakamoto, Mitsuo |
Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 70(6), page(s): 3656—3664 | 10.1099/ijsem.0.004215 |
| Im2008 | summary, general characteristics, metabolites, utilisation | Deinococcus aquaticus, Deinococcus caeni | 2008 |
Im, W.-T.; Jung, H.-M.; Ten, L. N.; Kim, M. K.; Bora, N.; Goodfellow, M.; Lim, S.; Jung, J.; Lee, S.-T. |
Deinococcus aquaticus sp. nov., isolated from fresh water, and Deinococcus caeni sp. nov., isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 58(10), page(s): 2348—2353 | 10.1099/ijs.0.64082-0 |
| Ishii2017 | summary, general characteristics, enzymes, metabolites, utilisation | Noviherbaspirillum denitrificans, Noviherbaspirillum autotrophicum, Noviherbaspirillum massiliense | 2017 |
Ishii, Satoshi; Ashida, Naoaki; Ohno, Hiroki; Segawa, Takahiro; Yabe, Shuhei; Otsuka, Shigeto; Yokota, Akira; Senoo, Keishi |
Noviherbaspirillum denitrificans sp. nov., a denitrifying bacterium isolated from rice paddy soil and Noviherbaspirillum autotrophicum sp. nov., a denitrifying, facultatively autotrophic bacterium isolated from rice paddy soil and proposal to reclassify Herbaspirillum massiliense as Noviherbaspirillum massiliense comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 67(6), page(s): 1841—1848 | 10.1099/ijsem.0.001875 |
| Isler2020 | antibiotics | Achromobacter denitrificans, Achromobacter xylosoxidans | 2020 |
Isler, Burcu; Kidd, Timothy J.; Stewart, Adam G.; Harris, Patrick; Paterson, David L. |
Achromobacter Infections and Treatment Options. | Antimicrobial Agents and Chemotherapy | 64(11), | 10.1128/aac.01025-20 |
| Ito1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Methylobacterium radiotolerans | 1971 |
Ito, Hitoshi; Iizuka, Hiroshi |
Taxonomic Studies on a Radio-resistant Pseudomonas. | Agricultural and Biological Chemistry | 35(10), page(s): 1566—1571 | 10.1080/00021369.1971.10860119 |
| Ito2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, blood infection | Capnocytophaga ochracea | 2016 |
Ito, Shimpei; Hagiya, Hideharu; Kimura, Keigo; Nishi, Isao; Yoshida, Hisao; Kioka, Hidetaka; Ohtani, Tomohito; Yamaguchi, Osamu; Tanabe, Kazuaki; Tomono, Kazunori; Sakata, Yasushi |
Capnocytophaga ochracea-related Bacterium Bacteremia in a Hypertrophic Cardiomyopathy Patient without Neutropenia. | Internal Medicine | 55(18), page(s): 2731—2735 | 10.2169/internalmedicine.55.6593 |
| Iversen2007 | summary, general characteristics, acid from carbohydrates, metabolites | Cronobacter sakazakii, Cronobacter sakazakii subsp. sakazakii, Cronobacter sakazakii subsp. malonaticus, Cronobacter turicensis, Cronobacter muytjensii, Cronobacter dublinensis, Cronobacter genomospecies 1 | 2007 |
Iversen, Carol; Lehner, Angelika; Mullane, Niall; Bidlas, Eva; Cleenwerck, Ilse; Marugg, John; Fanning, Séamus; Stephan, Roger; Joosten, Han |
The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1. | BMC Evolutionary Biology | 7(1), | 10.1186/1471-2148-7-64 |
| Iversen2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Cronobacter sakazakii, Cronobacter malonaticus, Cronobacter turicensis, Cronobacter muytjensii, Cronobacter dublinensis, Cronobacter genomospecies 1, Cronobacter dublinensis subsp. dublinensis, Cronobacter dublinensis subsp. lausannensis, Cronobacter dublinensis subsp. lactaridi | 2008 |
Iversen, C.; Mullane, N.; McCardell, B.; Tall, B. D.; Lehner, A.; Fanning, S.; Stephan, R.; Joosten, H. |
Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 58(6), page(s): 1442—1447 | 10.1099/ijs.0.65577-0 |
| Izard1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Klebsiella terrigena | 1981 |
Izard, D.; Ferragut, C.; Gavini, F.; Kersters, K.; J. De Ley; Leclerc, H. |
Klebsiella terrigena, a New Species from Soil and Water. | International Journal of Systematic Bacteriology | 31(2), page(s): 116—127 | 10.1099/00207713-31-2-116 |
| Izquierdo2014 | taxonomy | Clostridium clariflavum, Clostridium thermocellum | 2014 |
Izquierdo, Javier A.; Pattathil, Sivakumar; Guseva, Anna; Hahn, Michael G.; Lynd, Lee R. |
Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellum to utilize hemicellulose and unpretreated plant material. | Biotechnology for biofuels | 7, page(s): 136 | 10.1186/s13068-014-0136-4 |
| Jackwood1985 | summary, general characteristics, utilisation, metabolites | Alcaligenes faecalis, Alcaligenes faecalis subsp. faecalis | 1985 |
Jackwood, M. W.; Saif, Y. M.; Moorhead, P. D.; Dearth, R. N. |
Further characterization of the agent causing coryza in turkeys. | Avian diseases | 29(3), page(s): 690—705 | 10.2307/1590660 |
| JaenLuchoro2020 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | Corynebacterium sanguinis | 2020 |
Jaén-Luchoro, Daniel; Gonzales-Siles, Lucia; Karlsson, Roger; Svensson-Stadler, Liselott; Molin, Kent; Cardew, Sofia; Jensie-Markopolous, Susanne; Ohlén, Maria; Inganäs, Elisabeth; Skovbjerg, Susann; Tindall, Brian J.; Moore, Edward R. B. |
Corynebacterium sanguinis sp. nov., a clinical and environmental associated corynebacterium. | Systematic and Applied Microbiology | 43(1), page(s): 126039 | 10.1016/j.syapm.2019.126039 |
| Jalava1999 | taxonomy | Filifactor alocis, Eubacterium sulci | 1999 |
Jalava, Jari; Eerola, Erkki |
Phylogenetic analysis of Fusobacterium alocis and Fusobacterium sulci based on 16S rRNA gene sequences: proposal of Filifactor alocis (Cato, Moore and Moore) comb. nov. and Eubacterium sulci (Cato, Moore and Moore) comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(4), page(s): 1375—1379 | 10.1099/00207713-49-4-1375 |
| Jans2012 | enzymes | Streptococcus infantarius subsp. infantarius | 2012 |
Jans, Christoph; Gerber, Andrea; Bugnard, Joséphine; Njage, Patrick Murigu Kamau; Lacroix, Christophe; Meile, Leo |
Novel Streptococcus infantarius subsp. infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus. | Food Microbiology | 31(1), page(s): 33—42 | 10.1016/j.fm.2012.02.001 |
| Jarvis1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rhizobium loti | 1982 |
Jarvis, B. D. W.; Pankhurst, C. E.; Patel, J. J. |
Rhizobium loti, a New Species of Legume Root Nodule Bacteria. | International Journal of Systematic Bacteriology | 32(3), page(s): 378—380 | 10.1099/00207713-32-3-378 |
| Jarvis1997 | summary, general characteristics, enzymes, metabolites, utilisation | Mesorhizobium tianshanense, Mesorhizobium loti, Mesorhizobium huakuii, Mesorhizobium ciceri, Mesorhizobium mediterraneum | 1997 |
Jarvis, B. D. W.; Berkum, P. Van; Chen, W. X.; Nour, S. M.; Fernandez, M. P.; Cleyet-Marel, J. C.; Gillis, M. |
Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tianshanense to Mesorhizobium gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 47(3), page(s): 895—898 | 10.1099/00207713-47-3-895 |
| Jensen1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides pectinophilus, Bacteroides galacturonicus | 1986 |
Jensen, N. S.; Canale-Parola, E. |
Bacteroides pectinophilus sp. nov. and Bacteroides galacturonicus sp. nov.: two pectinolytic bacteria from the human intestinal tract. | Applied and environmental microbiology | 52, page(s): 880—887 | 10.1128/aem.52.4.880-887.1986 |
| Jensen1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Morganella morganii subsp. Morganii, Morganella morganii subsp. sibonii | 1992 |
Jensen, K. Truberg; Frederiksen, W.; Hickman-Brenner, F. W.; Steigerwalt, A. G.; Riddle, C. F.; Brenner, D. J. |
Recognition of Morganella Subspecies, with Proposal of Morganella morganii subsp. morganii subsp. nov. and Morganella morganii subsp. sibonii subsp. nov. | International Journal of Systematic Bacteriology | 42(4), page(s): 613—620 | 10.1099/00207713-42-4-613 |
| Jensen2011 | summary, general characteristics, enzymes | Streptococcus dysgalactiae, Streptococcus pyogenes | 2011 |
Jensen, Anders; Kilian, Mogens |
Delineation of Streptococcus dysgalactiae, Its Subspecies, and Its Clinical and Phylogenetic Relationship to Streptococcus pyogenes. | Journal of Clinical Microbiology | 50(1), page(s): 113—126 | 10.1128/jcm.05900-11 |
| Jensen2016 | taxonomy | Streptococcus oralis subsp. Dentisani, Streptococcus oralis subsp. tigurinus, Streptococcus oligofermentans, Streptococcus cristatus | 2016 |
Jensen, Anders; Scholz, Christian F. P.; Kilian, Mogens |
Re-evaluation of the taxonomy of the Mitis group of the genus Streptococcus based on whole genome phylogenetic analyses, and proposed reclassification of Streptococcus dentisani as Streptococcus oralis subsp. dentisani comb. nov., Streptococcus tigurinus as Streptococcus oralis subsp. tigurinus comb. nov., and Streptococcus oligofermentans as a later synonym of Streptococcus cristatus. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4803—4820 | 10.1099/ijsem.0.001433 |
| Jeong2017 | antibiotic, antimicrobial, fermented foods | Bacillus licheniformis | 2017 |
Jeong, Do-Won; Jeong, Miran; Lee, Jong-Hoon |
Antibiotic susceptibilities and characteristics of Bacillus licheniformis isolates from traditional Korean fermented soybean foods. | LWT | 75, page(s): 565—568 | 10.1016/j.lwt.2016.10.001 |
| Jeong2018 | summary, genetics | Bacillus velezensis var. polyfermenticus | 2018 |
Jeong, Haeyoung; Kim, JungAe; Choi, Soo-Keun; Pan, Jae-Gu |
Genome Sequence of the Probiotic Strain Bacillus velezensis Variant polyfermenticus GF423. | Microbiology Resource Announcements | 7(10), | 10.1128/mra.01000-18 |
| Jian2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Scardovia inopinata, Parascardovia denticolens | 2002 |
Jian, W. and Xiuzhu Dong |
Transfer of Bifidobacterium inopinatum and Bifidobacterium denticolens to Scardovia inopinata gen. nov., comb. nov., and Parascardovia denticolens gen. nov., comb. nov., respectively. | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 809—812 | 10.1099/ijs.0.02054-0 |
| Jiang2009 | summary, general characteristics, enzymes, metabolites, utilisation | Promicromonospora flava | 2009 |
Jiang, Y.; Wiese, J.; Cao, Y.-R.; Xu, L.-H.; Imhoff, J. F.; Jiang, C.-L. |
Promicromonospora flava sp. nov., isolated from sediment of the Baltic Sea. | International Journal of Systematic and Evolutionary Microbiology | 59(7), page(s): 1599—1602 | 10.1099/ijs.0.006197-0 |
| Jin2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Slackia equolifaciens | 2010 |
Jin, Jong-Sik; Kitahara, Maki; Sakamoto, Mitsuo; Hattori, Masao; Benno, Yoshimi |
Slackia equolifaciens sp. nov., a human intestinal bacterium capable of producing equol. | International Journal of Systematic and Evolutionary Microbiology | 60(8), page(s): 1721—1724 | 10.1099/ijs.0.016774-0 |
| Jin2014 | summary, general characteristics, enzymes, metabolites, utilisation | Gordonibacter faecihominis = Gordonibacter urolithinfaciens | 2014 |
Jin, Jong-Sik; Lee, Keun Chul; Park, In-Soon; Kim, Kwang Kyu; Ahn, Jong Seog; Benno, Yoshimi; Hattori, Masao; Lee, Jung-Sook |
Gordonibacter faecihominis sp. nov., isolated from human faeces. | Antonie van Leeuwenhoek | 106(3), page(s): 439—447 | 10.1007/s10482-014-0212-6 |
| Jit2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Flavobacterium lindanitolerans | 2008 |
Jit, S.; Dadhwal, M.; Prakash, O.; Lal, R. |
Flavobacterium lindanitolerans sp. nov., isolated from hexachlorocyclohexane-contaminated soil. | International Journal of Systematic and Evolutionary Microbiology | 58(7), page(s): 1665—1669 | 10.1099/ijs.0.65578-0 |
| Johnson1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides intermedius, Bacteroides corporis, Bacteroides levii | 1983 |
Johnson, J. L.; Holdeman, L. V. |
Bacteroides intermedius comb. nov. and Descriptions of Bacteroides corporis sp. nov. and Bacteroides levii sp. nov. | International Journal of Systematic Bacteriology | 33(1), page(s): 15—25 | 10.1099/00207713-33-1-15 |
| Johnson1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides caccae, Bacteroides merdae, Bacteroides stercoris | 1986 |
Johnson, J. L.; Moore, W. E. C.; Moore, L. V. H. |
Bacteroides caccae sp. nov., Bacteroides merdae sp. nov., and Bacteroides stercoris sp. nov. Isolated from Human Feces. | International Journal of Systematic Bacteriology | 36(4), page(s): 499—501 | 10.1099/00207713-36-4-499 |
| Johnson1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Actinomyces georgiae, Actinomyces gerencseriae, Actinomyces naeslundii, Actinomyces viscosus, Actinomyces naeslundii Genospecies 2 | 1990 |
Johnson, J. L.; Moore, L. V. H.; Kaneko, B.; Moore, W. E. C. |
Actinomyces georgiae sp. nov., Actinomyces gerencseriae sp. nov., Designation of Two Genospecies of Actinomyces naeslundii, and Inclusion of A. naeslundii serotypes II and III and Actinomyces viscosus serotype II in A. naeslundii Genospecies 2. | International Journal of Systematic Bacteriology | 40(3), page(s): 273—286 | 10.1099/00207713-40-3-273 |
| Johnson1997 | summary, general characteristics, antibiotics | Clostridium acetobutylicum | 1997 |
Johnson, J. L.; J., Toth; Santiwatanakul, S.; J.-S., Chen |
Cultures of Clostridium acetobutylicum from Various Collections Comprise Clostridium acetobutylicum, Clostridium beijerinckii, and Two Other Distinct Types Based on DNA-DNA Reassociation. | International Journal of Systematic and Evolutionary Microbiology | 47(2), page(s): 420—424 | 10.1099/00207713-47-2-420 |
| Johnson2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Averyella dalhousiensis | 2005 |
Johnson, Andrew S.; Tarr, Cheryl L.; Brown, B. H.; Birkhead, Karen M.; Farmer, J. J. |
First Case of Septicemia Due to a Strain Belonging to Enteric Group 58 (Enterobacteriaceae ) and Its Designation as Averyella dalhousiensis gen. nov., sp. nov., Based on Analysis of Strains from 20 Additional Cases. | Journal of Clinical Microbiology | 43(10), page(s): 5195—5201 | 10.1128/jcm.43.10.5195-5201.2005 |
| Jones1931 | summary, general characteristics, health | Vibrio Jejuni, Campylobacter jejuni | 1931 |
Jones, F. S.; Orcutt, Marion; Little, Ralph B. |
Vibrios (Vibrio Jejuni, n. sp.) Associated with Intestinal Disorders of Cows and Calves. | Journal of Experimental Medicine | 53(6), page(s): 853—863 | 10.1084/jem.53.6.853 |
| Jones1983 | taxonomy | Listeria monocytogenes | 1983 |
Jones, D.; Seeliger, H. P. R. |
Designation of a New Type Strain for Listeria monocytogenes Request for an Opinion. | International Journal of Systematic Bacteriology | 33(2), page(s): 429—429 | 10.1099/00207713-33-2-429 |
| Jones1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, skin | Dermabacter hominis | 1988 |
Jones, Dorothy; Collins, Matthew D. |
Taxonomic studies on some human cutaneous coryneform bacteria: Description of Dermabacter hominis gen. nov., sp. nov. | FEMS Microbiology Letters | 51(1), page(s): 51—55 | 10.1111/j.1574-6968.1988.tb02967.x |
| Jordan1982 | summary, general characteristics, enzymes, metabolites, utilisation, food source | Bradyrhizobium japonicum | 1982 |
Jordan, D. C. |
Notes: Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen. nov., a Genus of Slow-Growing, Root Nodule Bacteria from Leguminous Plants. | International Journal of Systematic Bacteriology | 32(1), page(s): 136—139 | 10.1099/00207713-32-1-136 |
| Joung2013 | summary, general characteristics, enzymes, metabolites, utilisation | Flavobacterium jumunjinense, Flavobacterium cheniae, Flavobacterium dongtanense, Flavobacterium gelidilacus | 2013 |
Joung, Yochan; Kim, Haneul; Joh, Kiseong |
Flavobacterium jumunjinense sp. nov., isolated from a lagoon, and emended descriptions of Flavobacterium cheniae , Flavobacterium dongtanense and Flavobacterium gelidilacus. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/11), page(s): 3937—3943 | 10.1099/ijs.0.045286-0 |
| JumasBilak2004 | summary, general characteristics, metabolites, antibiotics, utilisation, clinical sources | Veillonella montpellierensis | 2004 |
Jumas-Bilak, Estelle; Carlier, Jean-Philippe; Jean-Pierre, Hélene; Teyssier, Corinne; Gay, Bernard; Campos, Josiane; Marchandin, Hélene |
Veillonella montpellierensis sp. nov., a novel, anaerobic, Gram-negative coccus isolated from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1311—1316 | 10.1099/ijs.0.02952-0 |
| JumasBilak2005 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, clinical sources | Dialister micraerophilus, Dialister propionicifaciens, Dialister pneumosintes, Dialister invisus, Dialister propionicifaciens-like bacteria | 2005 |
Jumas-Bilak, Estelle; Jean-Pierre, Hélene; Carlier, Jean-Philippe; Teyssier, Corinne; Bernard, Kathryn; Gay, Bernard; Campos, Josiane; Morio, Florent; Marchandin, Hélene |
Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 55(6), page(s): 2471—2478 | 10.1099/ijs.0.63715-0 |
| JumasBilak2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Acidaminococcus intestini | 2007 |
Jumas-Bilak, Estelle; Carlier, Jean-Philippe; Jean-Pierre, Hélene; Mory, Francine; Teyssier, Corinne; Gay, Bernard; Campos, Josiane; Marchandin, Hélene |
Acidaminococcus intestini sp. nov., isolated from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 57(10), page(s): 2314—2319 | 10.1099/ijs.0.64883-0 |
| Jurado2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Aurantimonas altamirensis | 2006 |
Jurado, Valme; Gonzalez, Juan M.; Laiz, Leonila; Saiz-Jimenez, Cesareo |
Aurantimonas altamirensis sp. nov., a member of the order Rhizobiales isolated from Altamira Cave. | International Journal of Systematic and Evolutionary Microbiology | 56(11), page(s): 2583—2585 | 10.1099/ijs.0.64397-0 |
| Jyothsna2016 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Paraclostridium benzoelyticum, Paraclostridium bifermentans, Paeniclostridium sordellii, Paeniclostridium ghonii | 2016 |
Jyothsna, T. S. Sasi; Tushar, L.; Sasikala, Ch.; Ramana, Ch. V. |
Paraclostridium benzoelyticum gen. nov., sp. nov., isolated from marine sediment and reclassification of Clostridium bifermentans as Paraclostridium bifermentans comb. nov. Proposal of a new genus Paeniclostridium gen. nov. to accommodate Clostridium sordellii and Clostridium ghonii. | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1268—1274 | 10.1099/ijsem.0.000874 |
| Kaakoush2012 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter concisus | 2012 |
Kaakoush, Nadeem Omar; Mitchell, Hazel Marjory |
Campylobacter concisus - A New Player in Intestinal Disease. | Frontiers in Cellular and Infection Microbiology | 2, page(s): 1—4 | 10.3389/fcimb.2012.00004 |
| Kaempfer2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Wautersiella falsenii | 2006 |
Kämpfer, Peter; Avesani, Véronique; Janssens, Michele; Charlier, Jacqueline; Baere, Thierry De; Vaneechoutte, Mario |
Description of Wautersiella falsenii gen. nov., sp. nov., to accommodate clinical isolates phenotypically resembling members of the genera Chryseobacterium and Empedobacter. | International Journal of Systematic and Evolutionary Microbiology | 56(10), page(s): 2323—2329 | 10.1099/ijs.0.64393-0 |
| Kaempfer2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Sphingomonas pseudosanguinis | 2007 |
Kämpfer, Peter; Meurer, Uwe; Esser, Michael; Hirsch, Thomas; Busse, Hans-Jürgen |
Sphingomonas pseudosanguinis sp. nov., isolated from the water reservoir of an air humidifier. | International Journal of Systematic and Evolutionary Microbiology | 57(6), page(s): 1342—1345 | 10.1099/ijs.0.64942-0 |
| Kampfer2013 | summary, general characteristics, enzymes, metabolites, utilisation | Hydrogenibacillus schlegelii | 2013 |
Kämpfer, Peter; Glaeser, Stefanie P.; Busse, Hans-Jürgen |
Transfer of Bacillus schlegelii to a novel genus and proposal of Hydrogenibacillus schlegelii gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/5), page(s): 1723—1727 | 10.1099/ijs.0.045146-0 |
| Kaempfer2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Pseudocitrobacter faecalis, Pseudocitrobacter anthropi | 2014 |
Kämpfer, Peter; Glaeser, Stefanie P.; Raza, Muhammad W.; Abbasi, Shahid Ahmed; Perry, John D. |
Pseudocitrobacter gen. nov., a novel genus of the Enterobacteriaceae with two new species Pseudocitrobacter faecalis sp. nov., and Pseudocitrobacter anthropi sp. nov, isolated from fecal samples from hospitalized patients in Pakistan. | Systematic and Applied Microbiology | 37(1), page(s): 17—22 | 10.1016/j.syapm.2013.08.003 |
| Kaempfer2014a | general characteristics, utilisation | Rhodococcus hoagii, Rhodococcus defluvii | 2014 |
Kämpfer, P.; Dott, W.; Martin, K.; Glaeser, S. P. |
Rhodococcus defluvii sp. nov., isolated from wastewater of a bioreactor and formal proposal to reclassify [Corynebacterium hoagii] and Rhodococcus equi as Rhodococcus hoagii comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/3), page(s): 755—761 | 10.1099/ijs.0.053322-0 |
| Kaempfer2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Pseudocitrobacter faecalis, Pseudocitrobacter anthropi, Pseudocitrobacter vendiensis | 2020 |
Kämpfer, Peter; Fuglsang-Damgaard, David; Overballe-Petersen, Søren; Hasman, Henrik; Hammerum, Anette M.; Fuursted, Kurt; Blom, Jochen; Glaeser, Stefanie P.; Hansen, Frank |
Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 70(2), page(s): 1315—1320 | 10.1099/ijsem.0.003918 |
| Kageyama1999 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Collinsella aerofaciens | 1999 |
Kageyama, Akiko; Benno, Yoshimi; Nakase, Takashi |
Phylogenetic and phenotypic evidence for the transfer of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 557—565 | 10.1099/00207713-49-2-557 |
| Kageyama1999a | summary, general characteristics, metabolites, utilisation | Eggerthella lenta | 1999 |
Kageyama, Akiko; Benno, Yoshimi; Nakase, Takashi |
Phylogenetic evidence for the transfer of Eubacterium lentum to the genus Eggerthella as Eggerthella lenta gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(4), page(s): 1725—1732 | 10.1099/00207713-49-4-1725 |
| Kageyama2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Catenibacterium mitsuokai | 2000 |
Kageyama, A.; Benno, Y. |
Catenibacterium mitsuokai gen. nov., sp. nov., a gram-positive anaerobic bacterium isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1595—1599 | 10.1099/00207713-50-4-1595 |
| Kageyama2000a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Collinsella stercoris, Collinsella intestinalis | 2000 |
Kageyama, A.; Benno, Y. |
Emendation of genus Collinsella and proposal of Collinsella stercoris sp. nov. and Collinsella intestinalis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(5), page(s): 1767—1774 | 10.1099/00207713-50-5-1767 |
| Kageyama2000b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Coprobacillus cateniformis | 2000 |
Kageyama, Akiko; Benno, Yoshimi |
Coprobacillus catenaformisGen. Nov., Sp. Nov., a New Genus and Species Isolated from Human Feces. | Microbiology and Immunology | 44(1), page(s): 23—28 | 10.1111/j.1348-0421.2000.tb01242.x |
| Kageyama2000c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Solobacterium moorei | 2000 |
Kageyama, Akiko; Benno, Yoshimi |
Phylogenic and Phenotypic Characterization of Some Eubacterium-Like Isolates from Human Feces: Description of Solobacterium moorei gen. nov., sp. nov. | Microbiology and Immunology | 44(4), page(s): 223—227 | 10.1111/j.1348-0421.2000.tb02487.x |
| Kalmbach1999 | summary, general characteristics, enzymes, utilisation, water source | Aquabacterium citratiphilum, Aquabacterium parvum, Aquabacterium commune | 1999 |
Kalmbach, Sibylle; Manz, Werner; Wecke, Jörg; Szewzyk, Ulrich |
Aquabacterium gen. nov., with description of Aquabacterium citratiphilum sp. nov., Aquabacterium parvum sp. nov. and Aquabacterium commune sp. nov., three in situ dominant bacterial species from the Berlin drinking water system. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 769—777 | 10.1099/00207713-49-2-769 |
| Kalyuzhnaya2006 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Methyloversatilis universalis | 2006 |
Kalyuzhnaya, Marina G.; Marco, Paolo De; Bowerman, Sarah; Pacheco, Catarina C.; Lara, Jimmie C.; Lidstrom, Mary E.; Chistoserdova, Ludmila |
Methyloversatilis universalis gen. nov., sp. nov., a novel taxon within the Betaproteobacteria represented by three methylotrophic isolates. | International Journal of Systematic and Evolutionary Microbiology | 56(11), page(s): 2517—2522 | 10.1099/ijs.0.64422-0 |
| Kamoda2006 | antibiotics, antimicrobial | Helicobacter pylori, Campylobacter helveticus, Campylobacter jejuni | 2006 |
Kamoda, Osamu; Anzai, Kinsei; Mizoguchi, Jun-ichi; Shiojiri, Masatoshi; Yanagi, Toshiharu; Nishino, Takeshi; Kamiya, Shigeru |
In Vitro Activity of a Novel Antimicrobial Agent, TG44, for Treatment of Helicobacter pylori Infection. | Antimicrobial Agents and Chemotherapy | 50(9), page(s): 3062—3069 | 10.1128/aac.00036-06 |
| Kanakadandi2019 | antibiotics, blood infection | Cedecea davisae | 2019 |
Kanakadandi, Venkata Sowjanya; Sarao, Manbeer S.; Cunningham, Jessica M. |
A Rare Case of Cedecea Davisae Bacteremia Presenting as Biliary Sepsis. | Cureus | 11(8), page(s): e5298 | 10.7759/cureus.5298 |
| Kanamoto2000 | summary, general characteristics | Abiotrophia para-adiacens | 2000 |
Kanamoto, Taisei; Sato, Setsuko; Inoue, Masakazu |
Genetic Heterogeneities and Phenotypic Characteristics of Strains of the Genus Abiotrophia and Proposal of Abiotrophia para-adiacens sp. nov. | Journal of Clinical Microbiology | 38(2), page(s): 492—498 | 10.1128/jcm.38.2.492-498.2000 |
| Kanamoto2018 | antibiotic, antimicrobial, oral cavity | Granulicatella adiacens, Granulicatella elegans, Abiotrophia defectiva | 2018 |
Kanamoto, Taisei; Terakubo, Shigemi; Nakashima, Hideki |
Antimicrobial Susceptibilities of Oral Isolates of Abiotrophia and Granulicatella According to the Consensus Guidelines for Fastidious Bacteria. | Medicines (Basel, Switzerland) | 5(4), page(s): 129 | 10.3390/medicines5040129 |
| Kanauchi2006 | health, colitis | Eubacterium limosum | 2006 |
Kanauchi, Osamu |
Eubacterium limosum ameliorates experimental colitis and metabolite of microbe attenuates colonic inflammatory action with increase of mucosal integrity. | World Journal of Gastroenterology | 12(7), page(s): 1071 | 10.3748/wjg.v12.i7.1071 |
| Kandler1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus reuteri | 1980 |
Kandler, Otto; Stetter, Karl-Otto; Köhl, Ruth |
Lactobacillus reuteri sp. nov., a New Species of Heterofermentative Lactobacilli. | Zentralblatt für Bakteriologie | 1(3), page(s): 264—269 | 10.1016/s0172-5564(80)80007-8 |
| Kaneuchi1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium coccoides | 1976 |
Kaneuchi, C.; Benno, Y.; Mitsuoka, T. |
Clostridium coccoides, a New Species from the Feces of Mice. | International Journal of Systematic Bacteriology | 26(4), page(s): 482—486 | 10.1099/00207713-26-4-482 |
| Kaneuchi1976a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides clostridiiformis subsp. clostridiiformis, Clostridium clostridioforme, Clostridium symbiosum | 1976 |
Kaneuchi, C.; Watanabe, K.; Terada, A.; Benno, Y.; Mitsuoka, T. |
Taxonomic Study of Bacteroides clostridiiformis subsp. clostridiiformis (Burri and Ankersmit) Holdeman and Moore and of Related Organisms: Proposal of Clostridium clostridiiformis (Burri and Ankersmit) comb. nov. and Clostridium symbiosum (Stevens) comb. nov. | International Journal of Systematic Bacteriology | 26(2), page(s): 195—204 | 10.1099/00207713-26-2-195 |
| Kaneuchi1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium cocleatum, Clostridium spiroforme, Clostridium ramosum | 1979 |
Kaneuchi, C.; Miyazato, T.; Shinjo, T.; Mitsuoka, T. |
Taxonomic Study of Helically Coiled, Sporeforming Anaerobes Isolated from the Intestines of Humans and Other Animals: Clostridium cocleatum sp. nov. and Clostridium spiroforme sp. nov. | International Journal of Systematic Bacteriology | 29(1), page(s): 1—12 | 10.1099/00207713-29-1-1 |
| Kang2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Cellulomonas composti | 2007 |
Kang, Myung-Suk; Im, Wan-Taek; Jung, Hae-Min; Kim, Myung Kyum; Goodfellow, Michael; Kim, Kwang Kyu; Yang, Hee-Chan; An, Dong-Shan; Lee, Sung-Taik |
Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost. | International Journal of Systematic and Evolutionary Microbiology | 57(6), page(s): 1256—1260 | 10.1099/ijs.0.63974-0 |
| Kathariou1991 | genetics, taxonomy, enzymes | Listeria monocytogenes | 1991 |
Kathariou, S.; L., Pine |
The Type Strain(s) of Listeria monocytogenes: A Source of Continuing Difficulties. | International Journal of Systematic Bacteriology | 41(2), page(s): 328—330 | 10.1099/00207713-41-2-328 |
| Kati2010 | summary, general characteristics, enzymes, metabolites, utilisation | Brevibacterium pityocampae | 2010 |
Kat? H, ?nce ?A, Demir ?, Demirba? Z. |
Brevibacterium pityocampae sp. nov., isolated from caterpillars of Thaumetopoea pityocampa (Lepidoptera, Thaumetopoeidae). | International Journal of Systematic and Evolutionary Microbiology | 60(2), page(s): 312—316 | 10.1099/ijs.0.006692-0 |
| Kaur2014 | summary, general characteristics, enzymes, metabolites | Hungatella effluvii, Hungatella hathewayi | 2014 |
Kaur, Sukhpreet; Yawar, Mir; Kumar, P. Anil; Suresh, K. |
Hungatella effluvii gen. nov., sp. nov., an obligately anaerobic bacterium isolated from an effluent treatment plant, and reclassification of Clostridium hathewayi as Hungatella hathewayi gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/3), page(s): 710—718 | 10.1099/ijs.0.056986-0 |
| Kawamura1995 | summary | Abiotrophia defectiva | 1995 |
Kawamura, Y.; X.-G., Hou; Sultana, F.; S., Liu; Yamamoto, H.; Ezaki, T. |
Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., Respectively. | International Journal of Systematic and Evolutionary Microbiology | 45(4), page(s): 798—803 | 10.1099/00207713-45-4-798 |
| Kawamura1998 | summary, general characteristics, enzymes, acid from carbohydrates, clinical sources | Streptococcus peroris, Streptococcus infantis | 1998 |
Kawamura, Y.; Hou, X.-G.; Todome, Y.; Sultana, F.; Hirose, K.; Shu, S.-E.; Ezaki, T.; Ohkuni, H. |
Streptococcus peroris sp. nov. and Streptococcus infantis sp. nov., new members of the Streptococcus mitis group, isolated from human clinical specimens. | International Journal of Systematic Bacteriology | 48(3), page(s): 921—927 | 10.1099/00207713-48-3-921 |
| Keis2001 | summary, general characteristics, enzymes, utilisation | Clostridium acetobutylicum, Clostridium beijerinckii | 2001 |
Keis, S.; Shaheen, R.; Jones, D. T. |
Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(6), page(s): 2095—2103 | 10.1099/00207713-51-6-2095 |
| Keith2006 | antibiotics, sputum, clinical sources | Streptococcus pseudopneumoniae | 2006 |
Keith, Elaine R.; Podmore, Roslyn G.; Anderson, Trevor P.; Murdoch, David R. |
Characteristics of Streptococcus pseudopneumoniae Isolated from Purulent Sputum Samples. | Journal of Clinical Microbiology | 44(3), page(s): 923—927 | 10.1128/jcm.44.3.923-927.2006 |
| Kelesidis2010 | general characteristics. enzymes, antibiotics, blood infection | Anaerobiospirillum succiniciproducens | 2010 |
Kelesidis, Theodoros; Bard, Jennifer Dien; Humphries, Romney; Ward, Kevin; Lewinski, Michael A.; Uslan, Daniel Z. |
First Report of Treatment of Anaerobiospirillum succiniciproducens Bloodstream Infection with Levofloxacin. | Journal of Clinical Microbiology | 48(5), page(s): 1970—1973 | 10.1128/jcm.02478-09 |
| Kelly1987 | summary, general characteristics, acid from carbohydrates | Clostridium chartatabidum | 1987 |
Kelly, W. J.; Asmundson, R. V.; Hopcroft, D. H. |
Isolation and characterization of a strictly anaerobic, cellulolytic spore former: Clostridium chartatabidum sp. nov. | Archives of Microbiology | 147(2), page(s): 169—173 | 10.1007/bf00415279 |
| Kerbaugh1968 | summary, general characteristics | Aerococcus viridans | 1968 |
Kerbaugh, Mildred A.; Evans, James B. |
Aerococcus viridans in the Hospital Environment. | Applied Microbiology | 16(3), page(s): 519—523 | 10.1128/am.16.3.519-523.1968 |
| Khan2008 | summary, general characteristics, enzymes, metabolites, utilisation | Paracoccus marinus | 2008 |
Khan, S. T.; Takaichi, S.; Harayama, S. |
Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from coastal seawater in Tokyo Bay. | International Journal of Systematic and Evolutionary Microbiology | 58(2), page(s): 383—386 | 10.1099/ijs.0.65103-0 |
| Kheadr2007 | antibiotics, antimicrobial | Bifidobacterium animalis, Bifidobacterium breve, Bifidobacterium longum subsp. infantis, Bifidobacterium longum, Bifidobacterium pseudolongum, Bifidobacterium thermophilum | 2007 |
Kheadr, E.; Dabour, N.; Lay, C. Le; Lacroix, C.; Fliss, I. |
Antibiotic Susceptibility Profile of Bifidobacteria as Affected by Oxgall, Acid, and Hydrogen Peroxide Stress. | Antimicrobial Agents and Chemotherapy | 51(1), page(s): 169—174 | 10.1128/aac.00261-06 |
| Khelaifia2015 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Virgibacillus massiliensis | 2015 |
Khelaifia, S.; Croce, O.; Lagier, J.-C.; Robert, C.; Couderc, C.; Pinto, F. Di; Davoust, B.; Djossou, F.; Raoult, D.; Fournier, P.-E. |
Non-contiguous finished genome sequence and description of Virgibacillus massiliensis sp. nov., a moderately halophilic bacterium isolated from human gut. | New Microbes and New Infections | 8, page(s): 78—88 | 10.1016/j.nmni.2015.09.012 |
| Kiehlbauch1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, diarrhoea | Campylobacter butzleri | 1991 |
Kiehlbauch, J. A.; Brenner, D. J.; Nicholson, M. A.; Baker, C. N.; Patton, C. M.; Steigerwalt, A. G.; Wachsmuth, I. K. |
Campylobacter butzleri sp. nov. isolated from humans and animals with diarrheal illness. | Journal of Clinical Microbiology | 29(2), page(s): 376—385 | 10.1128/jcm.29.2.376-385.1991 |
| Kilian1976 | summary, general characteristics, enzymes, utilisation, metabolites | Haemophilus haemolyticus, Haemophilus influenzae, Haemophilus parainfluenzae, Haemophilus segnis | 1976 |
Kilian, M. |
A Taxonomic Study of the Genus Haemophilus, with the Proposal of a New Species. | Journal of General Microbiology | 93(1), page(s): 9—62 | 10.1099/00221287-93-1-9 |
| Kilian1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Streptococcus gordonii, Streptococcus sanguinis, Streptococcus oralis, Streptococcus mitis, Streptococcus mutans, Streptococcus salivarius, Streptococcus anginosus | 1989 |
Kilian, M.; Mikkelsen, L.; Henrichsen, J. |
Taxonomic Study of Viridans Streptococci: Description of Streptococcus gordonii sp. nov. and Emended Descriptions of Streptococcus sanguis (White and Niven 1946), Streptococcus oralis (Bridge and Sneath 1982), and Streptococcus mitis (Andrewes and Horder 1906). | International Journal of Systematic Bacteriology | 39(4), page(s): 471—484 | 10.1099/00207713-39-4-471 |
| Kilic2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, blood infection | Acinetobacter septicus | 2008 |
Kilic, Abdullah; Li, Haijing; Mellmann, Alexander; Basustaoglu, Ahmet C.; Kul, Mustafa; Senses, Zeynep; Aydogan, Hakan; Stratton, Charles W.; Harmsen, Dag; Tang, Yi-Wei |
Acinetobacter septicus sp. nov. Association with a Nosocomial Outbreak of Bacteremia in a Neonatal Intensive Care Unit. | Journal of Clinical Microbiology | 46(3), page(s): 902—908 | 10.1128/jcm.01876-07 |
| Killer2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium adolescentis, Bifidobacterium stercoris | 2013 |
Killer J, Sedlá?ek I, Rada V, Havlík J, Kope?ný J. |
Reclassification of Bifidobacterium stercoris Kim et al. 2010 as a later heterotypic synonym of Bifidobacterium adolescentis. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/11), page(s): 4350—4353 | 10.1099/ijs.0.054957-0 |
| KilpperBalz1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus saccharolyticus | 1981 |
Kilpper-Bälz, R.; Schleifer, K. H. |
Transfer of Peptococcus saccharolyticus Foubert and Douglas to the genus Staphylococcus: Staphylococcus saccharolyticus (Foubert and Douglas) comb. nov. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene | 2(4), page(s): 324—331 | 10.1016/s0721-9571(81)80025-7 |
| KilpperBalz1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus suis | 1987 |
Kilpper-Bälz, R.; Schleifer, K. H. |
Streptococcus suis sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 37(2), page(s): 160—162 | 10.1099/00207713-37-2-160 |
| Kilpperbalz1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Gemella morbillorum | 1988 |
Kilpper-Bälz, R.; Schleifer, K. H. |
Transfer of Streptococcus morbillorum to the Genus Gemella as Gemella morbillorum comb. nov. | International Journal of Systematic Bacteriology | 38(4), page(s): 442—443 | 10.1099/00207713-38-4-442 |
| Kim1999 | summary, general characteristics, enzymes, metabolites, utilisation | Streptomyces thermovulgaris, Streptomyces thermoviolaceus | 1999 |
Kim, Bongcheol; Sahin, Nevzat; Minnikin, David E.; Zakrzewska-Czerwinska, Jolanta; Mordarski, Marian; Goodfellow, Michael |
Classification of thermophilic streptomycetes, including the description of Streptomyces thermoalcalitolerans sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(1), page(s): 7—17 | 10.1099/00207713-49-1-7 |
| Kim2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Kocuria marina | 2004 |
Kim, Seung Bum; Nedashkovskaya, Olga I.; Mikhailov, Valery V.; Han, Suk Kyun; Kim, Kyoung-Ok; Rhee, Moon-Soo; Bae, Kyung Sook |
Kocuria marina sp. nov., a novel actinobacterium isolated from marine sediment. | International Journal of Systematic and Evolutionary Microbiology | 54(5), page(s): 1617—1620 | 10.1099/ijs.0.02742-0 |
| Kim2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Elizabethkingia meningoseptica, Elizabethkingia miricola | 2005 |
Kim, Kwang Kyu; Kim, Myung Kyum; Lim, Ju Hyoung; Park, Hye Yoon; Lee, Sung-Taik |
Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1287—1293 | 10.1099/ijs.0.63541-0 |
| Kim2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Ureibacillus suwonensis | 2006 |
Kim, Byung-Yong; Lee, Seon-Young; Weon, Hang-Yeon; Kwon, Soon-Wo; Go, Seung-Joo; Park, Yong-Keun; Schumann, Peter; Fritze, Dagmar |
Ureibacillus suwonensis sp. nov., isolated from cotton waste composts. | International Journal of Systematic and Evolutionary Microbiology | 56(3), page(s): 663—666 | 10.1099/ijs.0.63703-0 |
| Kim2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Paenibacillus pueri | 2009 |
Kim, B.-C.; Jeong, W.-J.; Kim, D. Y.; Oh, H.-W.; Kim, H.; Park, D.-S.; Park, H.-M.; Bae, K. S. |
Paenibacillus pueri sp. nov., isolated from Pu'er tea. | International Journal of Systematic and Evolutionary Microbiology | 59(5), page(s): 1002—1006 | 10.1099/ijs.0.002352-0 |
| Kim2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides faecis | 2010 |
Kim, Min-Soo; Roh, Seong Woon; Bae, Jin-Woo |
Bacteroides faecis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 60(11), page(s): 2572—2576 | 10.1099/ijs.0.020024-0 |
| Kim2010a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium stercoris, Bifidobacterium adolescentis | 2010 |
Kim, Min-Soo; Roh, Seong Woon; Bae, Jin-Woo |
Bifidobacterium stercoris sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 60(12), page(s): 2823—2827 | 10.1099/ijs.0.019943-0 |
| Kim2011 | summary, general characteristics, enzymes, metabolites, utilisation | Flavobacterium banpakuense | 2011 |
Kim, Joong-Jae; Jin, Hyun Mi; Lee, Hyo Jung; Jeon, Che Ok; Kanaya, Eiko; Koga, Yuichi; Takano, Kazufumi; Kanaya, Shigenori |
Flavobacterium banpakuense sp. nov., isolated from leaf-and-branch compost. | International Journal of Systematic and Evolutionary Microbiology | 61(7), page(s): 1595—1600 | 10.1099/ijs.0.022467-0 |
| Kim2011a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Ruminococcus faecis | 2011 |
Kim, Min-Soo; Roh, Seong Woon; Bae, Jin-Woo |
Ruminococcus faecis sp. nov., isolated from human faeces. | The Journal of Microbiology | 49(3), page(s): 487—491 | 10.1007/s12275-011-0505-7 |
| Kim2011b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Nevskia terrae, Nevskia ramosa | 2011 |
Kim, Soo-Jin; Weon, Hang-Yeon; Kim, Yi-Seul; Park, In-Cheol; Son, Jung-A.; Kwon, Soon-Wo |
Nevskia terrae sp. nov., isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 61(5), page(s): 1226—1229 | 10.1099/ijs.0.021238-0 |
| Kim2014 | antibiotics, blood infection | Capnocytophaga sputigena | 2014 |
Kim, Jung-Ah; Hong, Sung Kuk; Kim, Eui-Chong |
Capnocytophaga sputigena Bacteremia in a Patient with Chronic Lymphocytic Leukemia. | Annals of Laboratory Medicine | 34(4), page(s): 325—327 | 10.3343/alm.2014.34.4.325 |
| Kim2014a | summary, general characteristics, enzymes, metabolites | Mycobacterium gordonae | 2014 |
Kim, Byoung-Jun; Hong, Seok-Hyun; Kook, Yoon-Hoh; Kim, Bum-Joon |
Mycobacterium paragordonae sp. nov., a slowly growing, scotochromogenic species closely related to Mycobacterium gordonae. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/1), page(s): 39—45 | 10.1099/ijs.0.051540-0 |
| Kim2017 | summary, general characteristics, enzymes, metabolites, utilisation | Monoglobus pectinilyticus | 2017 |
Kim, Caroline C.; Kelly, William J.; Patchett, Mark L.; Tannock, Gerald W.; Jordens, Z.; Stoklosinski, Halina M.; Taylor, Jordan W.; Sims, Ian M.; Bell, Tracey J.; Rosendale, Douglas I. |
Monoglobus pectinilyticus gen. nov., sp. nov., a pectinolytic bacterium isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 67(12), page(s): 4992—4998 | 10.1099/ijsem.0.002395 |
| Kim2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blautia faecicola | 2020 |
Kim, Ji-Sun; Park, Jam-Eon; Lee, Keun Chul; Choi, Seung-Hyeon; Oh, Byeong Seob; Yu, Seung Yeob; Eom, Mi Kyung; Kang, Se Won; Han, Kook-Il; Suh, Min Kuk; Lee, Dong Ho; Yoon, Hyuk; Kim, Byung-Yong; Yang, Seung-Jo; Lee, Ju Huck; Lee, Jung-Sook; Park, Seung-Hwan |
Blautia faecicola sp. nov., isolated from faeces from a healthy human. | International Journal of Systematic and Evolutionary Microbiology | 70(3), page(s): 2059—2065 | 10.1099/ijsem.0.004015 |
| King1959 | antibiotics, general characteristics, summary, metabolites, health, meningitis | Elizabethkingia meningoseptica, Flavobacterium menginosepticum | 1959 |
King, Elizabeth O. |
Studies on a Group of Previously Unclassified Bacteria Associated with Meningitis in Infants. | American Journal of Clinical Pathology | 31(3), page(s): 241—247 | 10.1093/ajcp/31.3.241 |
| Kitahara2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium hylemonae, Clostridium scindens | 2000 |
Kitahara, M.; Takamine, F.; Imamura, T.; Benno, Y. |
Assignment of Eubacterium sp. VPI 12708 and related strains with high bile acid 7alpha-dehydroxylating activity to Clostridium scindens and proposal of Clostridium hylemonae sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 50(3), page(s): 971—978 | 10.1099/00207713-50-3-971 |
| Kitahara2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium hiranonis | 2001 |
Kitahara, M.; Takamine, F.; Imamura, T.; Benno, Y. |
Clostridium hiranonis sp. nov., a human intestinal bacterium with bile acid 7-alpha-dehydroxylating activity. | International Journal of Systematic and Evolutionary Microbiology | 51(1), page(s): 39—44 | 10.1099/00207713-51-1-39 |
| Kitahara2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides plebeius, Bacteroides coprocola | 2005 |
Kitahara, Maki; Sakamoto, Mitsuo; Ike, Masako; Sakata, Shinji; Benno, Yoshimi |
Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 55(5), page(s): 2143—2147 | 10.1099/ijs.0.63788-0 |
| Klaring2013 | summary, general characteristics, metabolites, antibiotics, utilisation, butyrate | Intestinimonas butyriciproducens | 2013 |
Kläring, Karoline; Hanske, Laura; Bui, Nam; Charrier, Cédric; Blaut, Michael; Haller, Dirk; Plugge, Caroline M.; Clavel, Thomas |
Intestinimonas butyriciproducens gen. nov., sp. nov., a butyrate-producing bacterium from the mouse intestine. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/12), page(s): 4606—4612 | 10.1099/ijs.0.051441-0 |
| Klijn1994 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium tyrobutyricum | 1994 |
Klijn, N.; Bovie, C.; Dommes, J.; Hoolwerf, J. D.; Waals, C. B. Van Der; Weerkamp, A. H.; Nieuwenhof, F. F. J. |
Identification of Clostridium tyrobutyricum and Related Species using Sugar Fermentation, Organic Acid Formation and DNA Probes Based on Specific 16S rRNA Sequences. | Systematic and Applied Microbiology | 17(2), page(s): 249—256 | 10.1016/s0723-2020(11)80016-0 |
| Kloos1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, skin | Micrococcus lylae, Micrococcus kristinae = Rothia kristinae | 1974 |
Kloos, W. E.; Tornabene, T. G.; Schleifer, K. H. |
Isolation and Characterization of Micrococci From Human Skin, Including Two New Species: Micrococcus lylae and Micrococcus kristinae. | International Journal of Systematic Bacteriology | 24(1), page(s): 79—101 | 10.1099/00207713-24-1-79 |
| Kloos1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Staphylococcus sciuri, Mammaliicoccus lentus | 1976 |
Kloos, W. E.; Schleifer, K. H.; Smith, R. F. |
Characterization of Staphylococcus sciuri sp. nov. and Its Subspecies. | International Journal of Systematic Bacteriology | 26(1), page(s): 22—37 | 10.1099/00207713-26-1-22 |
| Kloos1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Staphylococcus auricularis | 1983 |
Kloos, W. E.; Schleifer, K. H. |
Staphylococcus auricularis sp. nov.: an Inhabitant of the Human External Ear. | International Journal of Systematic Bacteriology | 33(1), page(s): 9—14 | 10.1099/00207713-33-1-9 |
| Kloos1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus cohnii subsp. Cohnii, Staphylococcus cohnii subsp. urealyticum | 1991 |
Kloos, W. E.; Wolfshohl, J. F. |
Staphylococcus cohnii Subspecies: Staphylococcus cohnii subsp. cohnii subsp. nov. and Staphylococcus cohnii subsp. urealyticum subsp. nov. | International Journal of Systematic Bacteriology | 41(2), page(s): 284—289 | 10.1099/00207713-41-2-284 |
| Ko2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, health, sepsis | Bacillus infantis, Bacillus idriensis | 2006 |
Ko, Kwan Soo; Oh, Won Sup; Lee, Mi Young; Lee, Jang Ho; Lee, Hyuck; Peck, Kyong Ran; Lee, Nam Yong; Song, Jae-Hoon |
Bacillus infantis sp. nov. and Bacillus idriensis sp. nov., isolated from a patient with neonatal sepsis. | International Journal of Systematic and Evolutionary Microbiology | 56(11), page(s): 2541—2544 | 10.1099/ijs.0.64213-0 |
| Kodama1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Pseudomonas oryzihabitans, Pseudomonas luteola | 1985 |
Kodama, K.; Kimura, N.; Komagata, K. |
Two New Species of Pseudomonas: P. oryzihabitans Isolated from Rice Paddy and Clinical Specimens and P. luteola Isolated from Clinical Specimens. | International Journal of Systematic Bacteriology | 35(4), page(s): 467—474 | 10.1099/00207713-35-4-467 |
| Kokcha2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus timonensis | 2012 |
Kokcha, Sahare; Mishra, Ajay Kumar; Lagier, Jean-Christophe; Million, Matthieu; Leroy, Quentin; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov. | Standards in Genomic Sciences | 6(3), page(s): 346—355 | 10.4056/sigs.2776064 |
| Kokcha2012a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Brevibacterium senegalense | 2012 |
Kokcha, Sahare; Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov. | Standards in Genomic Sciences | 7(2), page(s): 233—245 | 10.4056/sigs.3256677 |
| Kononen1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Prevotella pallens | 1998 |
Kononen, E.; Eerola, E.; Frandsen, E. V. G.; Jalava, J.; Matto, J.; Salmenlinna, S.; Jousimies-Somer, H. |
Phylogenetic characterization and proposal of a new pigmented species to the genus Prevotella: Prevotella pallens sp. nov. | International Journal of Systematic Bacteriology | 48(1), page(s): 47—51 | 10.1099/00207713-48-1-47 |
| Kosako1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Yokenella Regensburgei | 1984 |
Kosako, Yoshimasa; Sakazaki, Riichi; Yoshizaki, Etsuro |
Yokenella Regensburgei gen. nov., sp. nov.: A New Genus and Species in the Family Enterobacteriaceae. | Japanese Journal of Medical Science and Biology | 37(3), page(s): 117—124 | 10.7883/yoken1952.37.117 |
| Kostinek2005 | genetics, taxonomy | Lactobacillus arizonensis, Lactobacillus plantarum | 2005 |
Kostinek, Melanie; Pukall, Rüdiger; Rooney, Alejandro P.; Schillinger, Ulrich; Hertel, Christian; Holzapfel, Wilhelm H.; Franz, Charles M. A. P. |
Lactobacillus arizonensis is a later heterotypic synonym of Lactobacillus plantarum. | International Journal of Systematic and Evolutionary Microbiology | 55(6), page(s): 2485—2489 | 10.1099/ijs.0.63880-0 |
| Kovacs1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Kocuria palustris, Kocuria rhizophila | 1999 |
Kovács, Gabor; Burghardt, Jutta; Pradella, Silke; Schumann, Peter; Stackebrandt, Erko; Marialigeti, Károly |
Kocuria palustris sp. nov. and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia). | International Journal of Systematic and Evolutionary Microbiology | 49(1), page(s): 167—173 | 10.1099/00207713-49-1-167 |
| Kraatz2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Olsenella umbonata, Olsenella uli, Olsenella profusa | 2011 |
Kraatz, Mareike; Wallace, R. John; Svensson, Liselott |
Olsenella umbonata sp. nov., a microaerotolerant anaerobic lactic acid bacterium from the sheep rumen and pig jejunum, and emended descriptions of Olsenella, Olsenella uli and Olsenella profusa. | International Journal of Systematic and Evolutionary Microbiology | 61(4), page(s): 795—803 | 10.1099/ijs.0.022954-0 |
| Kremer1997 | taxonomy | Peptostreptococcus micros | 1997 |
Kremer, B. H. A.; Magee, J. T.; Van Dalen, P. J.; Van Steenbergen, T. J. M. |
Characterization of Smooth and Rough Morphotypes of Peptostreptococcus micros. | International Journal of Systematic Bacteriology | 47(2), page(s): 363—368 | 10.1099/00207713-47-2-363 |
| Krizova2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Acinetobacter variabilis | 2015 |
Krizova, Lenka; McGinnis, Jana; Maixnerova, Martina; Nemec, Matej; Poirel, Laurent; Mingle, Lisa; Sedo, Ondrej; Wolfgang, William; Nemec, Alexandr |
Acinetobacter variabilis sp. nov. (formerly DNA group 15 sensu Tjernberg/Ursing), isolated from humans and animals. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/3), page(s): 857—863 | 10.1099/ijs.0.000028 |
| Krzyminska2001 | summary | Aeromonas caviae | 2001 |
Krzyminska S, Mokracka J, Laganowska M, Wlodarczak K, Guszczynska EB, Liszkowska J, Popkowska E, Lima I, Lemanska I, Wendt M. |
Enhancement of the virulence of Aeromonas caviae diarrhoeal strains by serial passages in mice. | Journal of Medical Microbiology | 50(4), page(s): 303—312 | 10.1099/0022-1317-50-4-303 |
| Kuesel2000 | summary, general characteristics, metabolites, utilisation | Clostridium scatologenes | 2000 |
Küsel, K.; Dorsch, T.; Acker, G.; Stackebrandt, E.; Drake, H. L. |
Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments. | International Journal of Systematic and Evolutionary Microbiology | 50(2), page(s): 537—546 | 10.1099/00207713-50-2-537 |
| Kuhnert2002 | clinical sources | Prevotella nigrescens, Prevotella intermedia, Porphyromonas gingivalis | 2002 |
Kuhnert, P. |
Phylogenetic analysis of Prevotella nigrescens, Prevotella intermedia and Porphyromonas gingivalis clinical strains reveals a clear species clustering. | International Journal of Systematic and Evolutionary Microbiology | 52(4), page(s): 1391—1395 | 10.1099/ijs.0.02021-0 |
| Kulichevskaya2007 | summary, general characteristics, enzymes, metabolites, utilisation | Schlesneria paludicola | 2007 |
Kulichevskaya, Irina S.; Ivanova, Anastasia O.; Belova, Svetlana E.; Baulina, Olga I.; Bodelier, Paul L. E.; Rijpstra, W. Irene C.; Damsté, Jaap S. Sinninghe; Zavarzin, George A.; Dedysh, Svetlana N. |
Schlesneria paludicola gen. nov., sp. nov., the first acidophilic member of the order Planctomycetales, from Sphagnum-dominated boreal wetlands. | International Journal of Systematic and Evolutionary Microbiology | 57(11), page(s): 2680—2687 | 10.1099/ijs.0.65157-0 |
| Kurtzman2008 | yeasts | Yeasts | 2008 |
Kurtzman, Cletus P.; Robnett, Christie J.; Basehoar-Powers, Eleanor |
Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. | FEMS Yeast Research | 8(6), page(s): 939—954 | 10.1111/j.1567-1364.2008.00419.x |
| Kus2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Haemophilus quentini | 2019 |
Kus, Julianne V.; Shuel, Michelle; Soares, Deirdre; Hoang, William; Law, Dennis; Tsang, Raymond S. W. |
Identification and Characterization of 'Haemophilus quentini' Strains Causing Invasive Disease in Ontario, Canada (2016 to 2018). | Journal of Clinical Microbiology | 57(12), | 10.1128/jcm.01254-19 |
| Kusunoki1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Mycobacterium peregrinum, Mycobacterium abscessus | 1992 |
Kusunoki, S.; Ezaki, T. |
Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and Elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to Species Status: Mycobacterium abscessus comb. nov. | International Journal of Systematic Bacteriology | 42(2), page(s): 240—245 | 10.1099/00207713-42-2-240 |
| Kuykendall1992 | antibiotics | Bradyrhizobium japonicum, Bradyrhizobium elkanii | 1992 |
Kuykendall, L. D.; Saxena, B.; Devine, T. E.; Udell, S. E. |
Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov. | Canadian Journal of Microbiology | 38(6), page(s): 501—505 | 10.1139/m92-082 |
| Kwon2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sporosarcina koreensis, Sporosarcina soli | 2007 |
Kwon, Soon-Wo; Kim, Byung-Yong; Song, Jaekyeong; Weon, Hang-Yeon; Schumann, Peter; Tindall, Brian J.; Stackebrandt, Erko; Fritze, Dagmar |
Sporosarcina koreensis sp. nov. and Sporosarcina soli sp. nov., isolated from soil in Korea. | International Journal of Systematic and Evolutionary Microbiology | 57(8), page(s): 1694—1698 | 10.1099/ijs.0.64352-0 |
| Laffineur2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, blood infection | Microbacterium paraoxydans | 2003 |
Laffineur K, Avesani V, Cornu G, Charlier J, Janssens M, Wauters G, Delmée M. |
Bacteremia Due to a Novel Microbacterium Species in a Patient with Leukemia and Description of Microbacterium paraoxydans sp. nov. | Journal of Clinical Microbiology | 41(5), page(s): 2242—2246 | 10.1128/jcm.41.5.2242-2246.2003 |
| Lagier2012 | summary, general characteristics, enzymes, metabolites, antibiotics | Alistipes timonensis | 2012 |
Lagier, Jean-Christophe; Armougom, Fabrice; Mishra, Ajay Kumar; Nguyen, Thi-Tien; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov. | Standards in Genomic Sciences | 6(3), page(s): 315—324 | 10.4056/sigs.2685971 |
| Lagier2012a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaerococcus senegalensis | 2012 |
Lagier, Jean-Christophe; Karkouri, Khalid El; Nguyen, Thi-Tien; Armougom, Fabrice; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov. | Standards in Genomic Sciences | 6(1), page(s): 116—125 | 10.4056/sigs.2415480 |
| Lagier2012b | gut microbiome, compilation | compilation | 2012 |
Lagier, J.-C.; Armougom, F.; Million, M.; Hugon, P.; Pagnier, I.; Robert, C.; Bittar, F.; Fournous, G.; Gimenez, G.; Maraninchi, M.; Trape, J.-F.; Koonin, E. V.; Scola, B. La; Raoult, D. |
Microbial culturomics: paradigm shift in the human gut microbiome study. | Clinical Microbiology and Infection | 18(12), page(s): 1185—1193 | 10.1111/1469-0691.12023 |
| Lagier2012c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cellulomonas massiliensis | 2012 |
Lagier, Jean-Christophe; Ramasamy, Dhamodharan; Rivet, Romain; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov. | Standards in Genomic Sciences | 7(2), page(s): 258—270 | 10.4056/sigs.3316719 |
| Lagier2012d | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Herbaspirillum massiliense | 2012 |
Lagier, Jean-Christophe; Gimenez, Gregory; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov. | Standards in Genomic Sciences | 7(2), page(s): 1—14 | 10.4056/sigs.3086474 |
| Lagier2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Enterobacter massiliensis | 2013 |
Lagier, Jean-Christophe; Karkouri, Khalid El; Mishra, Ajay Kumar; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov. | Standards in Genomic Sciences | 7(3), page(s): 399—412 | 10.4056/sigs.3396830 |
| Lagier2013a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Senegalimassilia anaerobia | 2013 |
Lagier, Jean-Christophe; Elkarkouri, Khalid; Rivet, Romain; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. | Standards in Genomic Sciences | 7(3), page(s): 343—356 | 10.4056/sigs.3246665 |
| Lagier2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium jeddahense | 2014 |
Lagier, Jean-Christophe; Bibi, Fehmida; Ramasamy, Dhamodharan; Azhar, Esam I.; Robert, Catherine; Yasir, Muhammad; Jiman-Fatani, Asif A.; Alshali, Khalid Z.; Fournier, Pierre-Edouard; Raoult, Didier |
Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 1003—1019 | 10.4056/sigs.5571026 |
| Lagkouvardos2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides caecimuris, Blautia pseudococcoides, Flintibacter butyricus, Longicatena caecimuris, Acutalibacter muris, Muribaculum intestinale, Turicimonas muris, | 2016 |
Lagkouvardos, Ilias; Pukall, Rüdiger; Abt, Birte; Foesel, Bärbel U.; Meier-Kolthoff, Jan P.; Kumar, Neeraj; Bresciani, Anne; Martínez, Inés; Just, Sarah; Ziegler, Caroline; Brugiroux, Sandrine; Garzetti, Debora; Wenning, Mareike; Bui, Thi P. N.; Wang, Jun; Hugenholtz, Floor; Plugge, Caroline M.; Peterson, Daniel A.; Hornef, Mathias W.; Baines, John F.; Smidt, Hauke; Walter, Jens; Kristiansen, Karsten; Nielsen, Henrik B.; Haller, Dirk; Overmann, Jörg; Stecher, Bärbel; Clavel, Thomas |
The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. | Nature Microbiology | 1(10), | 10.1038/nmicrobiol.2016.131 |
| Lambert1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Staphylococcus succinus | 1998 |
Lambert, L. H.; Cox, T.; Mitchell, K.; Rossello-Mora, R. A.; Cueto, C. Del; Dodge, D. E.; Orkand, P.; Cano, R. J. |
Staphylococcus succinus sp. nov., isolated from Dominican amber. | International Journal of Systematic Bacteriology | 48(2), page(s): 511—518 | 10.1099/00207713-48-2-511 |
| Lan2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Mitsuokella jalaludinii | 2002 |
Lan, G. Q. |
Mitsuokella jalaludinii sp. nov., from the rumens of cattle in Malaysia. | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 713—718 | 10.1099/ijs.0.01930-0 |
| Lan2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides barnesiae, Bacteroides gallinarum, Bacteroides salanitronis | 2006 |
Lan, Pham Thi Ngoc; Sakamoto, Mitsuo; Sakata, Shinji; Benno, Yoshimi |
Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum. | International Journal of Systematic and Evolutionary Microbiology | 56(12), page(s): 2853—2859 | 10.1099/ijs.0.64517-0 |
| Lang2007 | summary, general characteristics, utilisation | Pseudomonas azelaica, Pseudomonas multiresinivorans, Pseudomonas citronellolis, Pseudomonas nitroreducens | 2007 |
Lang, Elke; Griese, Barbara; Spröer, Cathrin; Schumann, Peter; Steffen, Maike; Verbarg, Susanne |
Characterization of 'Pseudomonas azelaica' DSM 9128, leading to emended descriptions of Pseudomonas citronellolis Seubert 1960 (Approved Lists 1980) and Pseudomonas nitroreducens Iizuka and Komagata 1964 (Approved Lists 1980), including Pseudomonas multiresinivorans as its later heterotypic synonym. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 878—882 | 10.1099/ijs.0.64849-0 |
| Lanjekar2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Megasphaera indica, Megasphaera elsdenii | 2014 |
Lanjekar, V. B.; Marathe, N. P.; Ramana, V. Venkata; Shouche, Y. S.; Ranade, D. R. |
Megasphaera indica sp. nov., an obligate anaerobic bacteria isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/7), page(s): 2250—2256 | 10.1099/ijs.0.059816-0 |
| Lanjekar2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium punense | 2015 |
Lanjekar, Vikram Bholanath; Marathe, Nachiket Prakash; Shouche, Yogesh Shreepad; Ranade, Dilip Ramchandra |
Clostridium punense sp. nov., an obligate anaerobe isolated from healthy human faeces. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/12), page(s): 4749—4756 | 10.1099/ijsem.0.000644 |
| Lau2004 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, blood infection | Eggerthella hongkongensis, Eggerthella sinensis | 2004 |
Lau, Susanna K. P.; Woo, Patrick C. Y.; Woo, Gibson K. S.; Fung, Ami M. Y.; Wong, Michelle K. M.; Chan, King-man; Tam, Dorothy M. W.; Yuen, Kwok-yung |
Eggerthella hongkongensis sp. nov. and eggerthella sinensis sp. nov., two novel Eggerthella species, account for half of the cases of Eggerthella bacteremia. | Diagnostic Microbiology and Infectious Disease | 49(4), page(s): 255—263 | 10.1016/j.diagmicrobio.2004.04.012 |
| Lau2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaerotruncus colihominis | 2006 |
Lau, S. K. P. |
Bacteraemia caused by Anaerotruncus colihominis and emended description of the species. | Journal of Clinical Pathology | 59(7), page(s): 748—752 | 10.1136/jcp.2005.031773 |
| Lau2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, blood infection | Catabacter hongkongensis | 2007 |
Lau, Susanna K. P.; McNabb, Alan; Woo, Gibson K. S.; Hoang, Linda; Fung, Ami M. Y.; Chung, Liliane M. W.; Woo, Patrick C. Y.; Yuen, Kwok-Yung |
Catabacter hongkongensis gen. nov., sp. nov., Isolated from Blood Cultures of Patients from Hong Kong and Canada. | Journal of Clinical Microbiology | 45(2), page(s): 395—401 | 10.1128/jcm.01831-06 |
| Lau2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical, blood infection | Catabacter hongkongensis | 2012 |
Lau, S. K. P.; Fan, R. Y. Y.; Lo, H.-W.; Ng, R. H. Y.; Wong, S. S. Y.; Li, I. W. S.; Wu, A. K. L.; Ng, K. H. L.; Tseung, S.; Lee, R. A.; Fung, K. S. C.; Que, T.-L.; Yuen, K.-Y.; Woo, P. C. Y. |
High Mortality Associated with Catabacter hongkongensis Bacteremia. | Journal of Clinical Microbiology | 50(7), page(s): 2239—2243 | 10.1128/jcm.00128-12 |
| Lauer1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium gallicum | 1990 |
Lauer, E. |
Bifidobacterium gallicum sp. nov. Isolated from Human Feces. | International Journal of Systematic Bacteriology | 40(1), page(s): 100—102 | 10.1099/00207713-40-1-100 |
| Lautrop1956 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Klebsiella oxytoca | 1956 |
Lautrop, Hans |
Gelatin-Liquefying Klebsiella Strains (Bacterium Oxytocum (Flügge)). | Acta Pathologica Microbiologica Scandinavica | 39(5), page(s): 375—384 | 10.1111/j.1699-0463.1956.tb03415.x |
| LawBrown2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus phoeniculicola | 2003 |
Law-Brown, Janette; Meyers, Paul R. |
Enterococcus phoeniculicola sp. nov., a novel member of the enterococci isolated from the uropygial gland of the Red-billed Woodhoopoe, Phoeniculus purpureus. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 683—685 | 10.1099/ijs.0.02334-0 |
| Lawson1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Actinobaculum suis, Actinobaculum schaalii | 1997 |
Lawson, P. A.; Falsen, E.; Akervall, E.; Vandamme, P.; Collins, M. D. |
Characterization of Some Actinomyces-Like Isolates from Human Clinical Specimens: Reclassification of Actinomyces suis (Soltys and Spratling) as Actinobaculum suis comb. nov. and Description of Actinobaculum schaalii sp. nov. | International Journal of Systematic Bacteriology | 47(3), page(s): 899—903 | 10.1099/00207713-47-3-899 |
| Lawson2001 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter hominis | 2001 |
Lawson, A. J.; On, S. L.; Logan, J. M.; Stanley, J. |
Campylobacter hominis sp. nov., from the human gastrointestinal tract. | International Journal of Systematic and Evolutionary Microbiology | 51(2), page(s): 651—660 | 10.1099/00207713-51-2-651 |
| Lawson2001a | clinical sources | Actinomyces funkei | 2001 |
Lawson, P. A.; Nikolaitchouk, N.; Falsen, E.; Westling, K.; Collins, M. D. |
Actinomyces funkei sp. nov., isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 51(3), page(s): 853—855 | 10.1099/00207713-51-3-853 |
| Lawson2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, health, amniotic fluid | Prevotella amnii | 2008 |
Lawson, P. A.; Moore, E.; Falsen, E. |
Prevotella amnii sp. nov., isolated from human amniotic fluid. | International Journal of Systematic and Evolutionary Microbiology | 58(1), page(s): 89—92 | 10.1099/ijs.0.65118-0 |
| Lawson2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blautia obeum | 2015 |
Lawson, Paul A.; Finegold, Sydney M. |
Reclassification of Ruminococcus obeum as Blautia obeum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/3), page(s): 789—793 | 10.1099/ijs.0.000015 |
| Lawson2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridioides difficile, Clostridioides mangenotii | 2016 |
Lawson, Paul A.; Citron, Diane M.; Tyrrell, Kerin L.; Finegold, Sydney M. |
Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O'Toole 1935) Prevot 1938. | Anaerobe | 40, page(s): 95—99 | 10.1016/j.anaerobe.2016.06.008 |
| Leadbetter1979 | summary, general characteristics, metabolites | Capnocytophaga granulosa, Capnocytophaga ochracea, Capnocytophaga sputigena, Capnocytophaga gingivalis | 1979 |
Leadbetter, E. R.; Holt, S. C.; Socransky, S. S. |
Capnocytophaga: New genus of gram-negative gliding bacteria I. General characteristics, taxonomic considerations and significance. | Archives of Microbiology | 122(1), page(s): 9—16 | 10.1007/bf00408040 |
| Leao2011 | summary, general characteristics, enzymes, utilisation | Mycobacterium abscessus subsp. bolletii, Mycobacterium abscessus subsp. abscessus, Mycobacterium abscessus | 2011 |
Leao, Sylvia Cardoso; Tortoli, Enrico; Euzéby, Jean Paul; Garcia, Maria Jesus |
Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus. | International Journal of Systematic and Evolutionary Microbiology | 61(9), page(s): 2311—2313 | 10.1099/ijs.0.023770-0 |
| LeCorn2007 | antibiotics, oral cavity | Actinomyces israelii, Actinomyces naeslundii, Actinomyces viscosus | 2007 |
LeCorn, Demetrick W.; Vertucci, Frank J.; Rojas, Maria F.; Progulske-Fox, Ann; Bélanger, Myriam |
In Vitro Activity of Amoxicillin, Clindamycin, Doxycycline, Metronidazole, and Moxifloxacin Against Oral Actinomyces. | Journal of Endodontics | 33(5), page(s): 557—560 | 10.1016/j.joen.2007.02.002 |
| Lee1941 | summary, general characteristics, acid from carbohydrates, metabolites | Pseudomonas oleovorans | 1941 |
Lee, M.; Chandler, A. C. |
A Study of the Nature, Growth and Control of Bacteria in Cutting Compounds. | Journal of bacteriology | 41, page(s): 373—386 | 10.1128/jb.41.3.373-386.1941 |
| Lee1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Vibrio fluvialis | 1981 |
Lee, J.V.; Shread, P.; Furniss, A. L.; Bryant, T. N. |
Taxonomy and Description of Vibrio fluvialis sp. nov. (Synonym Group F Vibrios, Group EF6). | Journal of Applied Bacteriology | 50(1), page(s): 73—94 | 10.1111/j.1365-2672.1981.tb00873.x |
| Lee1989 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium intestinalis | 1989 |
Lee, W.-K.; Fujisawa, T.; Kawamura, S.; K., Itoh; Mitsuoka, T. |
Clostridium intestinalis sp. nov., an Aerotolerant Species Isolated from the Feces of Cattle and Pigs. | International Journal of Systematic Bacteriology | 39(3), page(s): 334—336 | 10.1099/00207713-39-3-334 |
| Lee2001 | health, antibiotics | Bacillus polyfermenticus | 2001 |
Lee, K.-H.; Jun, K.-D.; Kim, W.-S.; Paik, H.-D. |
Partial characterization of polyfermenticin SCD, a newly identified bacteriocin of Bacillus polyfermenticus. | Letters in Applied Microbiology | 32(3), page(s): 146—151 | 10.1046/j.1472-765x.2001.00876.x |
| Lee2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus daejeonensis | 2002 |
Lee, J. S. |
Paenibacillus daejeonensis sp. nov., a novel alkaliphilic bacterium from soil. | International Journal of Systematic and Evolutionary Microbiology | 52(6), page(s): 2107—2111 | 10.1099/ijs.0.02096-0 |
| Lee2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Silanimonas lenta | 2005 |
Lee, Eun Mi; Jeon, Che Ok; Choi, Inpyo; Chang, Kyu-Seob; Kim, Chang-Jin |
Silanimonas lenta gen. nov., sp. nov., a slightly thermophilic and alkaliphilic gammaproteobacterium isolated from a hot spring. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 385—389 | 10.1099/ijs.0.63328-0 |
| Lee2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Agrococcus jejuensis | 2008 |
Lee, S. D. |
Agrococcus jejuensis sp. nov., isolated from dried seaweed. | International Journal of Systematic and Evolutionary Microbiology | 58(10), page(s): 2297—2300 | 10.1099/ijs.0.65731-0 |
| Lee2015 | antibiotics, clinical sources | Bacteroides faecis, Bacteroides intestinalis | 2015 |
Lee, Yangsoon; Kim, Hyun Soo; Yong, Dongeun; Jeong, Seok Hoon; Lee, Kyungwon; Chong, Yunsop |
Bacteroides faecis and Bacteroides intestinalis Recovered from Clinical Specimens of Human Intestinal Origin. | Yonsei Medical Journal | 56(1), page(s): 292 | 10.3349/ymj.2015.56.1.292 |
| Lee2017 | antibiotic, antimicrobial | Acinetobacter baumannii | 2017 |
Lee, Chang-Ro; Lee, Jung Hun; Park, Moonhee; Park, Kwang Seung; Bae, Il Kwon; Kim, Young Bae; Cha, Chang-Jun; Jeong, Byeong Chul; Lee, Sang Hee |
Biology of Acinetobacter baumannii: Pathogenesis, Antibiotic Resistance Mechanisms, and Prospective Treatment Options. | Frontiers in Cellular and Infection Microbiology | 7, page(s): 55 | 10.3389/fcimb.2017.00055 |
| Lelliott1966 | summary, general characteristics, enzymes, acid from carbohydrates | Pseudomonas tolaasii | 1966 |
Lelliott, R. A.; Billing, Eve; Hayward, A. C. |
A Determinative Scheme for the Fluorescent Plant Pathogenic Pseudomonads. | Journal of Applied Bacteriology | 29(3), page(s): 470—489 | 10.1111/j.1365-2672.1966.tb03499.x |
| Lemaitre2011 | antibiotics | Pseudoclavibacter massiliense | 2011 |
Lemaitre, François; Stein, Andreas; Raoult, Didier; Drancourt, Michel |
Pseudoclavibacter-like subcutaneous infection: a case report. | Journal of Medical Case Reports | 5(1), page(s): 468 | 10.1186/1752-1947-5-468 |
| Levine1920 | summary, general characteristics, dysentery | Shigella flexneri, Shigella sonnei | 1920 |
Levine, M. |
Dysentery and Allied Bacilli. | Journal of Infectious Diseases | 27(1), page(s): 31—39 | 10.1093/infdis/27.1.31 |
| Li1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Peptostreptococcus vaginalis, Peptostreptococcus lacrimalis, Peptostreptococcus lactolyticus | 1992 |
Li, N.; Hashimoto, Y.; Adnan, S.; Miura, H.; Yamamoto, H.; Ezaki, T. |
Three New Species of the Genus Peptostreptococcus Isolated from Humans: Peptostreptococcus vaginalis sp. nov., Peptostreptococcus lacrimalis sp. nov., and Peptostreptococcus lactolyticus sp. nov. | International Journal of Systematic Bacteriology | 42(4), page(s): 602—605 | 10.1099/00207713-42-4-602 |
| Li1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blastomonas natatoria | 1997 |
Li, S. L. Y.; Cahill, M. M. |
Transfer of Blastobacter natatorius (Sly 1985) to the Genus Blastomonas gen. nov. as Blastomonas natatoria comb. nov. | International Journal of Systematic Bacteriology | 47(2), page(s): 566—568 | 10.1099/00207713-47-2-566 |
| Li2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rothia aeria, Rhodococcus baikonurensis, Arthrobacter russicus | 2004 |
Li, Ying; Kawamura, Yoshiaki; Fujiwara, Nagatoshi; Naka, Takashi; Liu, Hongsheng; Huang, Xinxiang; Kobayashi, Kazuo; Ezaki, Takayuki |
Rothia aeria sp. nov., Rhodococcus baikonurensis sp. nov. and Arthrobacter russicus sp. nov., isolated from air in the Russian space laboratory Mir. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 827—835 | 10.1099/ijs.0.02828-0 |
| Li2015 | summary, metabolites, general characteristics | Olsenella scatoligenes, Olsenella uli, Olsenella profusa | 2015 |
Li, Xiaoqiong; Jensen, Rikke Lassen; Højberg, Ole; Canibe, Nuria; Jensen, Bent Borg |
Olsenella scatoligenes sp. nov., a 3-methylindole- (skatole) and 4-methylphenol- (p-cresol) producing bacterium isolated from pig faeces. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/4), page(s): 1227—1233 | 10.1099/ijs.0.000083 |
| Li2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Flavobacterium viscosus, Flavobacterium tangerina | 2019 |
Li, Guiding; Chen, Xiu; Li, Youlong; Shi, Songbiao; Jiang, Longqian; Jiang, Yi; Han, Li; Huang, Xueshi; Jiang, Chenglin |
Flavobacterium viscosus sp. nov. and Flavobacterium tangerina sp. nov., from Primates Feces. | Current Microbiology | 76(7), page(s): 818—823 | 10.1007/s00284-019-01692-x |
| Li2021 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Limosilactobacillus balticus, Limosilactobacillus agrestis, Limosilactobacillus albertensis, Limosilactobacillus fastidiosus, Limosilactobacillus rudii, Limosilactobacillus reuteri | 2021 |
Li, Fuyong; Cheng, Christopher C.; Zheng, Jinshui; Liu, Junhong; Quevedo, Rodrigo Margain; Li, Junjie; Roos, Stefan; Gänzle, Michael G.; Walter, Jens |
Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts. | International Journal of Systematic and Evolutionary Microbiology | 71(2), | 10.1099/ijsem.0.004644 |
| Liu2008 | summary, general characteristics, acid from carbohydrates, metabolites | Blautia coccoides, Blautia hansenii, Blautia schinkii, Blautia luti, Blautia hydrogenotrophicus, Blautia producta, Blautia schinkii-like bacteria | 2008 |
Liu, C.; Finegold, S. M.; Song, Y.; Lawson, P. A. |
Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 58(8), page(s): 1896—1902 | 10.1099/ijs.0.65208-0 |
| Liu2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus mycoides, Bacillus weihenstephanensis | 2018 |
Liu, Yang; Lai, Qiliang; Shao, Zongze |
Genome analysis-based reclassification of Bacillus weihenstephanensis as a later heterotypic synonym of Bacillus mycoides. | International Journal of Systematic and Evolutionary Microbiology | 68(1), page(s): 106—112 | 10.1099/ijsem.0.002466 |
| Liu2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus halodurans, Bacillus okuhidensis | 2019 |
Liu, Guo-Hong; Rao, Manik Prabhu Narsing; Dong, Zhou-Yan; Wang, Jie-Ping; Che, Jian-Mei; Chen, Qian-Qian; Sengonca, Cetin; Liu, Bo; Li, Wen-Jun |
Genome-based reclassification of Bacillus okuhidensis as a later heterotypic synonym of Bacillus halodurans. | International Journal of Systematic and Evolutionary Microbiology | 69(11), page(s): 3599—3602 | 10.1099/ijsem.0.003666 |
| Liu2021 | antibiotics | Blautia producta | 2021 |
Liu, Xuemei; Guo, Weiling; Cui, Shumao; Tang, Xin; Zhao, Jianxin; Zhang, Hao; Mao, Bingyong; Chen, Wei |
A Comprehensive Assessment of the Safety of Blautia producta DSM 2950. | Microorganisms | 9(5), page(s): 908 | 10.3390/microorganisms9050908 |
| Liu2021a | probiotics | Blautia hansenii, Blautia hydrogenotrophica, Blautia luti, Blautia producta, Blautia wexlerae, Blautia stercoris, Blautia faecis, Blautia obeum, Blautia massiliensis, Blautia phocaeensis, Blautia marasmi, Blautia provencensis, Blautia hominis, Blautia brookingsii, Blautia faecicola | 2021 |
Liu, Xuemei; Mao, Bingyong; Gu, Jiayu; Wu, Jiaying; Cui, Shumao; Wang, Gang; Zhao, Jianxin; Zhang, Hao; Chen, Wei |
Blautia - a new functional genus with potential probiotic properties?. | Gut Microbes | 13(1), page(s): 1875796 | 10.1080/19490976.2021.1875796 |
| Liu2021b | genetics, taxonomy | Christensenella hongkongensis | 2021 |
Liu, Xiaoying; Sutter, Jessica L.; de la Cuesta-Zuluaga, Jacobo; Waters, Jillian L.; Youngblut, Nicholas D.; Ley, Ruth E. |
Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis. | International Journal of Systematic and Evolutionary Microbiology | 71(4), | 10.1099/ijsem.0.004774 |
| Lo2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium dakarense | 2013 |
Lo, Cheikh Ibrahima; Mishra, Ajay Kumar; Padhmanabhan, Roshan; Samb, Bissoume; Sow, Amy Gassama; Robert, Catherine; Couderc, Carine; Faye, Ngor; Raoult, Didier; Fournier, Pierre-Edouard; Fenollar, Florence |
Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov. | Standards in Genomic Sciences | 9(1), page(s): 14—27 | 10.4056/sigs.4097825 |
| Loesche1964 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Bacteroides Oralis | 1964 |
Loesche, W. J.; Socransky, S. S.; Gibbons, R. J. |
Bacteroides Oralis , Proposed New Species Isolated from the Oral Cavity of Man. | Journal of bacteriology | 88(5), page(s): 1329—1337 | 10.1128/jb.88.5.1329-1337.1964 |
| Logan2000 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter lanienae | 2000 |
Logan, J. M.; Burnens, A.; Linton, D.; Lawson, A. J.; Stanley, J. |
Campylobacter lanienae sp. nov., a new species isolated from workers in an abattoir. | International Journal of Systematic and Evolutionary Microbiology | 50(2), page(s): 865—872 | 10.1099/00207713-50-2-865 |
| Logan2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus alkalophilus, Bacillus amyloliquefaciens, Bacillus anthracis, Bacillus atrophaeus, Bacillus badius DSM 23T, Bacillus badius DSM 5610, Bacillus benzoevorans, Bacillus cereus, Bacillus circulans, Bacillus clausii, Bacillus coagulans, Bacillus endophyticus, Bacillus firmus, Bacillus fordii, Bacillus lentus, Bacillus licheniformis, Bacillus methanolicus, Bacillus mojavensis, Bacillus mycoides, Bacillus pseudofirmus, Bacillus psychrosaccharolyticus, Bacillus pumilus, Bacillus simplex, Bacillus siralis, Bacillus sonorensis, Bacillus subtilis, Bacillus thuringiensis, Bacillus vallismortis, Caldibacillus thermoamylovorans, Hydrogenibacillus schlegelii, Lysinibacillus fusiformis, Lysinibacillus sphaericus, Neobacillus niacini, Niallia nealsonii, Priestia flexa, Priestia megaterium, Rossellomorea marisflavi, Sutcliffiella cohnii | 2011 |
Logan, Niall A.; Vos, Paul De |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Bacillaceae Genus I. Bacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 21—128 | 10.1007/b92997 |
| Lomans2001 | summary, general characteristics, metabolites, water source | Parasporobacterium paucivorans | 2001 |
Lomans, Bart P.; Leijdekkers, Pieter; Wesselink, Jan-Jaap; Bakkes, Patrick; Pol, Arjan; van der Drift, Chris; den Camp, Huub J. M. Op |
Obligate Sulfide-Dependent Degradation of Methoxylated Aromatic Compounds and Formation of Methanethiol and Dimethyl Sulfide by a Freshwater Sediment Isolate, Parasporobacterium paucivorans gen. nov., sp. nov. | Applied and Environmental Microbiology | 67(9), page(s): 4017—4023 | 10.1128/aem.67.9.4017-4023.2001 |
| Loong2018 | antibiotics | Paenibacillus lautus | 2018 |
Loong, Shih-Keng; Ishak, Siti-Nabilah; Lim, Fang-Shiang; Khoo, Jing-Jing; Tan, Sing-Ngoh; Freddy-Jalin, Eunice-Jalin; Mohd-Taib, Farah-Shafawati; AbuBakar, Sazaly |
Paenibacillus lautus, an opportunistic bacterial pathogen, isolated from Ixodes granulatus Supino (Acari: Ixodidae) collected from a Müller's giant Sunda rat (Sundamys muelleri). | Systematic and Applied Acarology | 23(4), page(s): 597 | 10.11158/saa.23.4.2 |
| Loubinoux2002 | summary, general characteristics, utilisation | Desulfovibrio piger | 2002 |
Loubinoux, J. |
Reclassification of the only species of the genus Desulfomonas, Desulfomonas pigra, as Desulfovibrio piger comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(4), page(s): 1305—1308 | 10.1099/ijs.0.02175-0 |
| Love1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium villosum | 1979 |
Love, D. N.; Jones, R. F.; Bailey, M. |
Clostridium villosum sp. nov. from Subcutaneous Abscesses in Cats. | International Journal of Systematic Bacteriology | 29(3), page(s): 241—244 | 10.1099/00207713-29-3-241 |
| Ma2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Paenibacillus sabinae | 2007 |
Ma, Yuchao; Xia, Zhiqiang; Liu, Xuming; Chen, Sanfeng |
Paenibacillus sabinae sp. nov., a nitrogen-fixing species isolated from the rhizosphere soils of shrubs. | International Journal of Systematic and Evolutionary Microbiology | 57(1), page(s): 6—11 | 10.1099/ijs.0.64519-0 |
| Maesschalck2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Faecalicoccus acidiformans, Faecalicoccus pleomorphus, Holdemanella biformis, Faecalitalea cylindroides | 2014 |
Maesschalck, Celine De; Immerseel, Filip Van; Eeckhaut, Venessa; Baere, Siegrid De; Cnockaert, Margo; Croubels, Siska; Haesebrouck, Freddy; Ducatelle, Richard; Vandamme, Peter |
Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/11), page(s): 3877—3884 | 10.1099/ijs.0.064626-0 |
| Maiden2003 | genetics, taxonomy | Tannerella forsythia | 2003 |
Maiden, M. F. J. |
Proposal to conserve the adjectival form of the specific epithet in the reclassification of Bacteroides forsythus Tanner et al. 1986 to the genus Tannerella Sakamoto et al. 2002 as Tannerella forsythia corrig., gen. nov., comb. nov. Request for an Opinion. | International Journal of Systematic and Evolutionary Microbiology | 53(6), page(s): 2111—2112 | 10.1099/ijs.0.02641-0 |
| Mailhe2017 | summary | Actinomyces bouchesdurhonensis, Actinomyces mediterranea | 2017 |
Mailhe, Morgane; Ricaboni, Davide; Benezech, Alban; Cadoret, Frédéric; Fournier, Pierre-Edouard; Raoult, Didier |
Actinomyces bouchesdurhonensis sp. nov. and Actinomyces mediterranea sp. nov., isolated from human stomach and duodenum. | Human Microbiome Journal | 3, page(s): 13—14 | 10.1016/j.humic.2017.01.001 |
| Malnick1997 | summary, general characteristics, health, diarrhoea | Anaerobiospirillum thomasii, Anaerobiospirillum succiniciproducens | 1997 |
Malnick, H. |
Anaerobiospirillum thomasii sp. nov., an Anaerobic Spiral Bacterium Isolated from the Feces of Cats and Dogs and from Diarrheal Feces of Humans, and Emendation of the Genus Anaerobiospirillum. | International Journal of Systematic Bacteriology | 47(2), page(s): 381—384 | 10.1099/00207713-47-2-381 |
| Manachini1985 | summary, general characteristics, metabolites, utilisation, antibiotics | Brevibacillus thermoruber | 1985 |
Manachini, P. L.; Fortina, M. G.; Parini, C.; Craveri, R. |
Bacillus thermoruber sp. nov., nom. rev., a Red-Pigmented Thermophilic Bacterium. | International Journal of Systematic Bacteriology | 35(4), page(s): 493—496 | 10.1099/00207713-35-4-493 |
| Manaia2004 | summary, general characteristics, enzymes, metabolites, utilisation | Gulosibacter molinativorax, Pseudoclavibacter helvolus, Pseudoclavibacter massiliense | 2004 |
Manaia, Célia M.; Nogales, Balbina; Weiss, Norbert; Nunes, Olga C. |
Gulosibacter molinativorax gen. nov., sp. nov., a molinate-degrading bacterium, and classification of 'Brevibacterium helvolum' DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 783—789 | 10.1099/ijs.0.02851-0 |
| Marchandin2010 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, clinical sources | Negativicoccus succinicivorans | 2010 |
Marchandin, Hélene; Teyssier, Corinne; Campos, Josiane; Jean-Pierre, Hélene; Roger, Frédéric; Gay, Bernard; Carlier, Jean-Philippe; Jumas-Bilak, Estelle |
Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes. | International Journal of Systematic and Evolutionary Microbiology | 60(6), page(s): 1271—1279 | 10.1099/ijs.0.013102-0 |
| Martin1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Janibacter limosus | 1997 |
Martin, K.; Schumann, P.; Rainey, F. A.; Schuetze, B.; Groth, I. |
Janibacter limosus gen. nov., sp. nov., a New Actinomycete with meso-Diaminopimelic Acid in the Cell Wall. | International Journal of Systematic Bacteriology | 47(2), page(s): 529—534 | 10.1099/00207713-47-2-529 |
| MartinezMurcia1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Aeromonas allosaccharophila | 1992 |
Martinez-Murcia, A. J.; Esteve, C.; Garay, E.; Collins, M. D. |
Aeromonas allosaccharophilasp. nov., a new mesophilic member of the genusAeromonas. | FEMS Microbiology Letters | 91(3), page(s): 199—205 | 10.1111/j.1574-6968.1992.tb05209.x |
| MartinezMurcia2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Aeromonas aquariorum | 2008 |
Martinez-Murcia, A. J.; Saavedra, M. J.; Mota, V. R.; Maier, T.; Stackebrandt, E.; Cousin, S. |
Aeromonas aquariorum sp. nov., isolated from aquaria of ornamental fish. | International Journal of Systematic and Evolutionary Microbiology | 58(5), page(s): 1169—1175 | 10.1099/ijs.0.65352-0 |
| Maruo2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks | Adlercreutzia equolifaciens, Eggerthella sinensis | 2008 |
Maruo, T.; Sakamoto, M.; Ito, C.; Toda, T.; Benno, Y. |
Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella. | International Journal of Systematic and Evolutionary Microbiology | 58(5), page(s): 1221—1227 | 10.1099/ijs.0.65404-0 |
| Masco2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium animalis subsp. animalis, Bifidobacterium animalis subsp. lactis | 2004 |
Masco, Liesbeth; Ventura, Marco; Zink, Ralf; Huys, Geert; Swings, Jean |
Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1137—1143 | 10.1099/ijs.0.03011-0 |
| Mashima2018 | oral cavity | Veillonella infantium | 2018 |
Mashima, Izumi; Liao, Yu-Chieh; Miyakawa, Hiroshi; Theodorea, Citra F.; Thawboon, Boonyanit; Thaweboon, Sroisiri; Scannapieco, Frank A.; Nakazawa, Futoshi |
Veillonella infantium sp. nov., an anaerobic, Gram-stain-negative coccus isolated from tongue biofilm of a Thai child. | International Journal of Systematic and Evolutionary Microbiology | 68(4), page(s): 1101—1106 | 10.1099/ijsem.0.002632 |
| Maszenan1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Amaricoccus veronensis, Amaricoccus tamworthensis, Amaricoccus macauensis, Amaricoccus kaplicensis | 1997 |
Maszenan, A. M.; Seviour, R. J.; Patel, B. K. C.; Rees, G. N.; McDougall, B. M. |
Amaricoccus gen. nov., a Gram-Negative Coccus Occurring in Regular Packages or Tetrads, Isolated from Activated Sludge Biomass, and Descriptions of Amaricoccus veronensis sp. nov., Amaricoccus tamworthensis sp. nov., Amaricoccus macauensis sp. nov., and Amaricoccus kaplicensis sp. nov. | International Journal of Systematic Bacteriology | 47(3), page(s): 727—734 | 10.1099/00207713-47-3-727 |
| Mattarelli2008 | summary | Bifidobacterium longum subsp. longum, Bifidobacterium longum subsp. infantis, Bifidobacterium longum subsp. suis | 2008 |
Mattarelli, P.; Bonaparte, C.; Pot, B.; Biavati, B. |
Proposal to reclassify the three biotypes of Bifidobacterium longum as three subspecies: Bifidobacterium longum subsp. longum subsp. nov., Bifidobacterium longum subsp. infantis comb. nov. and Bifidobacterium longum subsp. suis comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 58(4), page(s): 767—772 | 10.1099/ijs.0.65319-0 |
| Matteuzzi1983 | antibiotic, antimicrobial | Bifidobacterium breve, Bifidobacterium bifidum, Bifidobacterium longum subsp. longum, Bifidobacterium adolescentis, Bifidobacterium longum subsp. infantis, Bifidobacterium catenulatum, Bifidobacterium thermophilum, Bifidobacterium dentium, Bifidobacterium angulatum, Bifidobacterium pseudolongum, Bifidobacterium coryneforme | 1983 |
Matteuzzi, D.; Crociani, F.; Brigidi, P. |
Antimicrobial susceptibility of Bifidobacterium. | Annales de microbiologie | 134A, page(s): 339—349 | 10.1016/S0769-2609(83)80059-3 |
| Matthies2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Slackia isoflavoniconvertens | 2009 |
Matthies, Anastasia; Blaut, Michael; Braune, Annett |
Isolation of a Human Intestinal Bacterium Capable of Daidzein and Genistein Conversion. | Applied and Environmental Microbiology | 75(6), page(s): 1740—1744 | 10.1128/aem.01795-08 |
| Mays1982 | taxonomy | Veillonella genus, Veillonella parvula, Veillonella atypica, Veillonella dispar, Veillonella ratti | 1982 |
Mays, T. D.; Holdeman, L. V.; Moore, W. E. C.; Rogosa, M.; Johnson, J. L. |
Taxonomy of the Genus Veillonella Prevot. | International Journal of Systematic Bacteriology | 32(1), page(s): 28—36 | 10.1099/00207713-32-1-28 |
| Mazier2021 | health, obesity, summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Christensenella minuta | 2021 |
Mazier, Wilfrid; Corf, Katy Le; Martinez, Ccori; Tudela, Héloïse; Kissi, Déborah; Kropp, Camille; Coubard, Chrislain; Soto, Marion; Elustondo, Frédéric; Rawadi, Georges; Claus, Sandrine P. |
A New Strain of Christensenella minuta as a Potential Biotherapy for Obesity and Associated Metabolic Diseases. | Cells | 10(4), page(s): 823 | 10.3390/cells10040823 |
| McCoy1926 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium acetobutylicum | 1926 |
McCoy, E.; Fred, E. B.; Peterson, W. H.; Hastings, E. G. |
A Cultural Study of the Acetone Butyl Alcohol Organism: One Plate. | Journal of Infectious Diseases | 39(6), page(s): 457—483 | 10.1093/infdis/39.6.457 |
| McLean1953 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food contamination | Microbacterium Thermosphactum | 1953 |
McLean, Ruth A.; Sulzbacher, William L. |
Microbacterium Thermosphactum, spec nov: A Nonheat Resistant Bacterium from Fresh Pork Sausage. | Journal of bacteriology | 65(4), page(s): 428—433 | 10.1128/jb.65.4.428-433.1953 |
| McWhorter1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Trabulsiella guamensis | 1991 |
McWhorter, A. C.; Haddock, R. L.; Nocon, F. A.; Steigerwalt, A. G.; Brenner, D. J.; Aleksia, S.; Bockemühl, J.; Farmer, J. J. |
Trabulsiella guamensis, a new genus and species of the family Enterobacteriaceae that resembles Salmonella subgroups 4 and 5. | Journal of Clinical Microbiology | 29, page(s): 1480—1485 | 10.1128/jcm.29.7.1480-1485.1991 |
| Mechichi1999 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium methoxybenzovorans | 1999 |
Mechichi, Tahar; Labat, Marc; Patel, Bharat K. C.; Woo, Tony H. S.; Thomas, Pierre; Garcia, Jean-Louis |
Clostridium methoxybenzovorans sp. nov., a new aromatic o-demethylating homoacetogen from an olive mill wastewater treatment digester. | International Journal of Systematic and Evolutionary Microbiology | 49(3), page(s): 1201—1209 | 10.1099/00207713-49-3-1201 |
| Mekhalif2019 | summary, general characteristics, enzymes, metabolites, utilisation | Brachybacterium massiliense | 2019 |
Mekhalif, F.; Alou, M. Tidjani; Zgheib, R.; Lo, C. I.; Fournier, P.-E.; Raoult, D.; Lagier, J.-C. |
Brachybacterium massiliense sp. nov., a new bacterium isolated from stool from a healthy Senegalese child. | New Microbes and New Infections | 31, page(s): 100588 | 10.1016/j.nmni.2019.100588 |
| Melito2001 | summary, general characteristics, enzymes, antibiotics, gastroenteritis | Helicobacter winghamensis | 2001 |
Melito, P. L.; Munro, C.; Chipman, P. R.; Woodward, D. L.; Booth, T. F.; Rodgers, F. G. |
Helicobacter winghamensis sp. nov., a Novel Helicobacter sp. Isolated from Patients with Gastroenteritis. | Journal of Clinical Microbiology | 39(7), page(s): 2412—2417 | 10.1128/jcm.39.7.2412-2417.2001 |
| Merhej2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Yersinia massiliensis | 2008 |
Merhej, V.; Adekambi, T.; Pagnier, I.; Raoult, D.; Drancourt, M. |
Yersinia massiliensis sp. nov., isolated from fresh water. | International Journal of Systematic and Evolutionary Microbiology | 58(4), page(s): 779—784 | 10.1099/ijs.0.65219-0 |
| Merhej2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium ihumii | 2015 |
Merhej, Vicky; Pfleiderer, Anne; Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Michelle, Caroline; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Clostridium ihumii sp. nov. | Standards in Genomic Sciences | 10(1), | 10.1186/s40793-015-0025-x |
| Merriam2006 | oral cavity | Eikenella corrodens | 2006 |
Merriam, C. Vreni; Citron, Diane M.; Tyrrell, Kerin L.; Warren, Yumi A.; Goldstein, Ellie J. C. |
In vitro activity of azithromycin and nine comparator agents against 296 strains of oral anaerobes and 31 strains of Eikenella corrodens. | International Journal of Antimicrobial Agents | 28(3), page(s): 244—248 | 10.1016/j.ijantimicag.2006.03.028 |
| Miller1985 | summary, general characteristics, metabolites, utilisation | Methanosphaera stadtmanae | 1985 |
Miller, Terry L.; Wolin, Meyer J. |
Methanosphaera stadtmaniae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen. | Archives of Microbiology | 141(2), page(s): 116—122 | 10.1007/bf00423270 |
| Minamida2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Asaccharobacter celatus | 2008 |
Minamida, K.; Ota, K.; Nishimukai, M.; Tanaka, M.; Abe, A.; Sone, T.; Tomita, F.; Hara, H.; Asano, K. |
Asaccharobacter celatus gen. nov., sp. nov., isolated from rat caecum. | International Journal of Systematic and Evolutionary Microbiology | 58(5), page(s): 1238—1240 | 10.1099/ijs.0.64894-0 |
| MinanaGalbis2010 | summary, general characteristics | Aeribacillus pallidus | 2010 |
Minana-Galbis, David; Pinzón, Dora L.; Lorén, J. Gaspar; Manresa, angels; Oliart-Ros, Rosa M. |
Reclassification of Geobacillus pallidus (Scholz et al. 1988) Banat et al. 2004 as Aeribacillus pallidus gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 60(7), page(s): 1600—1604 | 10.1099/ijs.0.003699-0 |
| Mishra2012 | summary, general characteristics, antibiotics | Alistipes senegalensis | 2012 |
Mishra, Ajay Kumar; Gimenez, Gregory; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Genome sequence and description of Alistipes senegalensis sp. nov. | Standards in Genomic Sciences | 6(3), page(s): 304—314 | 10.4056/sigs.2625821 |
| Mishra2012a | summary, general characteristics, enzymes, antibiotics | Clostridium senegalense | 2012 |
Mishra, Ajay Kumar; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov. | Standards in Genomic Sciences | 6(3), page(s): 401—410 | 10.4056/sigs.2766062 |
| Mishra2012b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Paenibacillus senegalensis | 2012 |
Mishra, Ajay Kumar; Lagier, Jean-Christophe; Rivet, Romain; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov. | Standards in Genomic Sciences | 7(1), page(s): 70—81 | 10.4056/sigs.3056450 |
| Mishra2012c | summary, general characteristics, enzymes, metabolites, antibiotics | Peptoniphilus timonensis | 2012 |
Mishra, Ajay Kumar; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov. | Standards in Genomic Sciences | 7(1), page(s): 1—11 | 10.4056/sigs.2956294 |
| Mishra2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus massilioanorexius | 2013 |
Mishra, Ajay Kumar; Pfleiderer, Anne; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Bacillus massilioanorexius sp. nov. | Standards in Genomic Sciences | 8(3), page(s): 465—479 | 10.4056/sigs.4087826 |
| Mishra2013a | summary, general characteristics, enzymes, metabolites, utilisation | Enorma massiliensis | 2013 |
Mishra, Ajay Kumar; Hugon, Perrine; Lagier, Jean-Christophe; Nguyen, Thi-Tien; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae. | Standards in Genomic Sciences | 8(2), page(s): 290—305 | 10.4056/sigs.3426906 |
| Mishra2013b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Holdemania massiliensis | 2013 |
Mishra, Ajay Kumar; Lagier, Jean-Christophe; Pfleiderer, Anne; Nguyen, Thi Thien; Caputo, Aurelia; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Holdemania massiliensis sp. nov. | Standards in Genomic Sciences | 9(2), page(s): 395—409 | 10.4056/sigs.4628316 |
| Mishra2013c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Nosocomiicoccus massiliensis | 2013 |
Mishra, Ajay Kumar; Edouard, Sophie; Dangui, Nicole Prisca Makaya; Lagier, Jean-Christophe; Caputo, Aurelia; Blanc-Tailleur, Caroline; Ravaux, Isabelle; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov. | Standards in Genomic Sciences | 9(1), page(s): 205—219 | 10.4056/sigs.4378121 |
| Mishra2013d | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Peptoniphilus grossensis | 2013 |
Mishra, Ajay Kumar; Hugon, Perrine; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov. | Standards in Genomic Sciences | 7(3), page(s): 1—16 | 10.4056/sigs.3076460 |
| Mishra2013e | summary, general characteristics, enzymes, metabolites, antibiotics | Peptoniphilus senegalensis | 2013 |
Mishra, Ajay Kumar; Lagier, Jean-Christophe; Nguyen, Thi-Tien; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov. | Standards in Genomic Sciences | 7(3), page(s): 370—381 | 10.4056/sigs.3366764 |
| Mishra2013f | summary, general characteristics, enzymes, metabolites, antibiotics | Peptoniphilus obesi | 2013 |
Mishra, Ajay Kumar; Hugon, Perrine; Lagier, Jean-Christophe; Nguyen, Thi-Thien; Robert, Catherine; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov. | Standards in Genomic Sciences | 7, page(s): 357—369 | 10.4056/sigs.3276687 |
| Mishra2013g | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Timonella senegalensis | 2013 |
Mishra, Ajay Kumar; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier; Fournier, Pierre-Edouard |
Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae. | Standards in Genomic Sciences | 8(2), page(s): 318—335 | 10.4056/sigs.3476977 |
| Mitsuoka1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Bacteroides multiacidus | 1974 |
Mitsuoka, T.; Terada, A.; Watanabe, K.; Uchida, K. |
Bacteroides multiacidus, a New Species from the Feces of Humans and Pigs. | International Journal of Systematic Bacteriology | 24(1), page(s): 35—41 | 10.1099/00207713-24-1-35 |
| Mitsuoka1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus hamsteri | 1987 |
Mitsuoka, Tomotari; Fujisawa, Tomohiko |
Lactobacillus hamsteri, a new species from the intestine of hamsters. | Proceedings of the Japan Academy, Series B | 63(7), page(s): 269—272 | 10.2183/pjab.63.269 |
| Miwa2008 | summary, general characteristics, enzymes, metabolites, utilisation | Variovorax boronicumulans | 2008 |
Miwa, H.; Ahmed, I.; Yoon, J.; Yokota, A.; Fujiwara, T. |
Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 58(1), page(s): 286—289 | 10.1099/ijs.0.65315-0 |
| Mohan2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium asparagiforme | 2006 |
Mohan, Ruchika; Namsolleck, Pawel; Lawson, Paul A.; Osterhoff, Martin; Collins, Matthew D.; Alpert, Carl-Alfred; Blaut, Michael |
Clostridium asparagiforme sp. nov., isolated from a human faecal sample. | Systematic and Applied Microbiology | 29(4), page(s): 292—299 | 10.1016/j.syapm.2005.11.001 |
| Monchamp2019 | genetics, taxonomy, educational | Cyanobacteria | 2019 |
Monchamp, Marie-Eve; Spaak, Piet; Pomati, Francesco |
Long Term Diversity and Distribution of Non-photosynthetic Cyanobacteria in Peri-Alpine Lakes. | Frontiers in Microbiology | 9, | 10.3389/fmicb.2018.03344 |
| Monteverde1944 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Salmonella genus, Citrobacter freundii | 1944 |
Monteverde, Jose |
A New Type of the Salmonella Genus. | Nature | 154(3917), page(s): 676—676 | 10.1038/154676a0 |
| Moore1965 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, image | Butyribacterium limosum, Butyribacterium rettgeri, Eubacterium limosum | 1965 |
Moore, W. E. C.; Cato, E. P. |
Synonymy of Eubacterium limosum and Butyribacterium rettgeri: Butyribacterium limosum comb. nov. | International Bulletin of Bacteriological Nomenclature and Taxonomy | 15(2), page(s): 69—80 | 10.1099/00207713-15-2-69 |
| Moore1972 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ruminococcus bromii, Ruminococcus Sijpestein | 1972 |
Moore, W. E. C.; E. P., Cato; Holdeman, L. V. |
Ruminococcus bromii sp. n. and Emendation of the Description of Ruminococcus Sijpestein. | International Journal of Systematic Bacteriology | 22(2), page(s): 78—80 | 10.1099/00207713-22-2-78 |
| Moore1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Desulfovibrio piger, Butyrivibrio crossotus, Ruminococcus gnavus, Ruminococcus lactaris, Blautia obeum, Eubacterium dolichum, Anaerostipes hadrus, Eubacterium ramulus, Eubacterium siraeum, Clostridium leptum | 1976 |
Moore, W. E. C.; Johnson, J. L.; Holdeman, L. V. |
Emendation of Bacteroidaceae and Butyrivibrio and Descriptions of Desulfomonas gen. nov. and Ten New Species in the Genera Desulfomonas, Butyrivibrio, Eubacterium, Clostridium, and Ruminococcus. | International Journal of Systematic Bacteriology | 26(2), page(s): 238—252 | 10.1099/00207713-26-2-238 |
| Moore1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Prevotella tannerae, Prevotella enoeca, Prevotella zoogleoformans | 1994 |
Moore, L. V. H.; Johnson, J. L.; Moore, W. E. C. |
Descriptions of Prevotella tannerae sp. nov. and Prevotella enoeca sp. nov. from the Human Gingival Crevice and Emendation of the Description of Prevotella zoogleoformans. | International Journal of Systematic Bacteriology | 44(4), page(s): 599—602 | 10.1099/00207713-44-4-599 |
| Moore1994a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Oribaculum catoniae, Catonella morbi, Hallella seregens, Johnsonella ignava | 1994 |
Moore, L. V. H.; Moore, W. E. C. |
Oribaculum catoniae gen. nov., sp. nov.: Catonella morbi gen. nov., sp. nov.: Hallella seregens gen. nov., sp. nov.: Johnsonella ignava gen. nov., sp. nov.: and Dialister pneumosintes gen. nov., comb. nov., nom. rev., Anaerobic Gram-Negative Bacilli from the Human Gingival Crevice. | International Journal of Systematic Bacteriology | 44(2), page(s): 187—192 | 10.1099/00207713-44-2-187 |
| VandenMooter1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Stenotrophomonas maltophilia | 1990 |
Van den Mooter, M.; Swings, J. |
Numerical Analysis of 295 Phenotypic Features of 266 Xanthomonas Strains and Related Strains and an Improved Taxonomy of the Genus. | International Journal of Systematic Bacteriology | 40(4), page(s): 348—369 | 10.1099/00207713-40-4-348 |
| Morita2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium catenulatum subsp. kashiwanohense | 2011 |
Morita, Hidetoshi; Nakano, Akiyo; Onoda, Hiromi; Toh, Hidehiro; Oshima, Kenshiro; Takami, Hideto; Murakami, Masaru; Fukuda, Shinji; Takizawa, Tatsuya; Kuwahara, Tomomi; Ohno, Hiroshi; Tanabe, Soichi; Hattori, Masahira |
Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces. | International Journal of Systematic and Evolutionary Microbiology | 61(11), page(s): 2610—2615 | 10.1099/ijs.0.024521-0 |
| Morotomi2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Barnesiella intestinihominis, Dialister succinatiphilus | 2008 |
Morotomi, M.; Nagai, F.; Sakon, H.; Tanaka, R. |
Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 58(12), page(s): 2716—2720 | 10.1099/ijs.0.2008/000810-0 |
| Morotomi2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Paraprevotella clara, Paraprevotella xylaniphila | 2009 |
Morotomi, M.; Nagai, F.; Sakon, H.; Tanaka, R. |
Paraprevotella clara gen. nov., sp. nov. and Paraprevotella xylaniphila sp. nov., members of the family 'Prevotellaceae' isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 59(8), page(s): 1895—1900 | 10.1099/ijs.0.008169-0 |
| Morotomi2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Succinatimonas hippei, Succinivibrio dextrinosolvens, Anaerobiospirillum thomasii, Anaerobiospirillum succiniciproducens | 2010 |
Morotomi, Masami; Nagai, Fumiko; Watanabe, Yohei; Tanaka, Ryuichiro |
Succinatimonas hippei gen. nov., sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 60(8), page(s): 1788—1793 | 10.1099/ijs.0.015958-0 |
| Morotomi2011 | summary, general characteristics, enzymes, metabolites | Parasutterella secunda | 2011 |
Morotomi, Masami; Nagai, Fumiko; Watanabe, Yohei |
Parasutterella secunda sp. nov., isolated from human faeces and proposal of Sutterellaceae fam. nov. in the order Burkholderiales. | International Journal of Systematic and Evolutionary Microbiology | 61(3), page(s): 637—643 | 10.1099/ijs.0.023556-0 |
| Morotomi2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Christensenella minuta | 2012 |
Morotomi, Masami; Nagai, Fumiko; Watanabe, Yohei |
Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov. | International Journal of Systematic and Evolutionary Microbiology | 62(1), page(s): 144—149 | 10.1099/ijs.0.026989-0 |
| Morris1985 | summary, general characteristics, metabolites, antibiotics, utilisation | Clostridium scindens | 1985 |
Morris, G. N.; Winter, J.; E. P., Cato; Ritchie, A. E.; Bokkenheuser, V. D. |
Clostridium scindens sp. nov., a Human Intestinal Bacterium with Desmolytic Activity on Corticoids. | International Journal of Systematic Bacteriology | 35(4), page(s): 478—481 | 10.1099/00207713-35-4-478 |
| Morris1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Eubacterium desmolans | 1986 |
Morris, G. N.; Winter, J.; Cato, E. P.; Ritchie, A. E.; Bokkenheuser, V. D. |
Eubacterium desmolans sp. nov., a Steroid Desmolase-Producing Species from Cat Fecal Flora. | International Journal of Systematic Bacteriology | 36(2), page(s): 183—186 | 10.1099/00207713-36-2-183 |
| Moubareck2005 | antibiotic, antimicrobial | Bifidobacterium animalis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium longum, Bifidobacterium pseudocatenulatum | 2005 |
Moubareck, C.; Gavini, F.; Vaugien, L.; Butel, M. J.; Doucet-Populaire, F. |
Antimicrobial susceptibility of bifidobacteria. | Journal of Antimicrobial Chemotherapy | 55(1), page(s): 38—44 | 10.1093/jac/dkh495 |
| Mountfort1988 | summary, general characteristics, enzymes, metabolites, utilisation | Eubacterium callanderi | 1988 |
Mountfort, D. O.; Grant, W. D.; Clarke, R.; Asher, R. A. |
Eubacterium callanderi sp. nov. That Demethoxylates O-Methoxylated Aromatic Acids to Volatile Fatty Acids. | International Journal of Systematic Bacteriology | 38(3), page(s): 254—258 | 10.1099/00207713-38-3-254 |
| Mountfort1997 | summary, general characteristics, metabolites | Clostridium vincentii | 1997 |
Mountfort, D. O.; Rainey, Frederick A.; Burghardt, Jutta; Kaspar, Heinrich F.; Stackebrandt, Erko |
Clostridium vincentii sp. nov., a new obligately anaerobic, saccharolytic, psychrophilic bacterium isolated from low-salinity pond sediment of the McMurdo Ice Shelf, Antarctica. | Archives of Microbiology | 167(1), page(s): 54—60 | 10.1007/s002030050416 |
| Mourembou2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Beduini massiliensis | 2015 |
Mourembou, Gaël; Yasir, Muhammad; Azhar, Esam Ibraheem; Lagier, Jean Christophe; Bibi, Fehmida; Jiman-Fatani, Asif Ahmad; Helmy, Nayel; Robert, Catherine; Rathored, Jaishriram; Fournier, Pierre-Edouard; Raoult, Didier; Million, Matthieu |
Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov. | OMICS: A Journal of Integrative Biology | 19(12), page(s): 766—776 | 10.1089/omi.2015.0143 |
| Mourembou2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Gabonia massiliensis | 2016 |
Mourembou, G.; Rathored, J.; Ndjoyi-Mbiguino, A.; Lekana-Douki, J. B.; Fenollar, F.; Robert, C.; Fournier, P.-E.; Raoult, D.; Lagier, J. C. |
Non-contiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov. | New Microbes and New Infections | 9, page(s): 35—44 | 10.1016/j.nmni.2015.11.002 |
| Mourembou2017 | summary, general characteristics | Bacillus massiliogabonensis | 2017 |
Mourembou, G.; Ndjoyi-Mbiguino, A.; Lekana-Douki, J. B.; Fournier, P.-E.; Raoult, D.; Bittar, F. |
Discovery of a new species within Bacillus genus in a stool sample from Gabon: 'Bacillus massiliogabonensis' sp. nov. | New Microbes and New Infections | 15, page(s): 3—5 | 10.1016/j.nmni.2016.09.013 |
| Muhammad2015 | summary | Aeribacillus pallidus | 2015 |
Muhammad, Syed Aun; Ahmed, Safia |
Production and characterization of a new antibacterial peptide obtained from Aeribacillus pallidus SAT4. | Biotechnology Reports | 8, page(s): 72—80 | 10.1016/j.btre.2015.09.003 |
| MunchPetersen1954 | general characteristics, acid from carbohydrates, metabolites | Streptococcus agalactiae | 1954 |
Munch-Petersen, E. |
Note on Streptococcus agalactiae. | International Bulletin of Bacteriological Nomenclature and Taxonomy | 4(2), page(s): 129—130 | 10.1099/0096266x-4-2-129 |
| Mundt1968 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Streptococcus faecium var. casseliflavus = Enterococcus casseliflavus | 1968 |
Mundt, J. Orvin; Graham, Wanda F. |
Streptococcus faecium var. casseliflavus , nov. var. | Journal of bacteriology | 95(6), page(s): 2005—2009 | 10.1128/jb.95.6.2005-2009.1968 |
| Murdoch1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Peptoniphilus harei, Peptoniphilus ivorii, Anaerococcus octavius | 1997 |
Murdoch, D. A.; Collins, M. D.; Willems, A.; Hardie, J. M.; Young, K. A.; Magee, J. T. |
Description of Three New Species of the Genus Peptostreptococcus from Human Clinical Specimens: Peptostreptococcus harei sp. nov., Peptostreptococcus ivorii sp. nov., and Peptostreptococcus octavius sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 47(3), page(s): 781—787 | 10.1099/00207713-47-3-781 |
| Murdoch1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Peptostreptococcus hydrogenalis, Peptostreptococcus lacrimalis, Anaerococcus prevotii, Peptostreptococcus productus, Ruminococcus productus, Anaerococcus vaginalis | 1998 |
Murdoch, D. A. |
Gram-Positive Anaerobic Cocci. | Clinical Microbiology Reviews | 11(1), page(s): 81—120 | 10.1128/cmr.11.1.81 |
| Murray1982 | summary, general characteristics, metabolites, utilisation | Clostridium saccharolyticum | 1982 |
Murray, W. D.; A. W., Khan; Van Den L., B. E. R. G. |
Clostridium saccharolyticum sp. nov., a Saccharolytic Species from Sewage Sludge. | International Journal of Systematic Bacteriology | 32(1), page(s): 132—135 | 10.1099/00207713-32-1-132 |
| Mushtaq2016 | antibiotic, antimicrobial | Abiotrophia defectiva, Granulicatella adiacens | 2016 |
Mushtaq, Ammara; Greenwood-Quaintance, Kerryl E.; Cole, Nicolynn C.; Kohner, Peggy C.; Ihde, Sherry M.; Strand, Gregory J.; Harper, Lance W.; Virk, Abinash; Patel, Robin |
Differential Antimicrobial Susceptibilities of Granulicatella adiacens and Abiotrophia defectiva. | Antimicrobial Agents and Chemotherapy | 60(8), page(s): 5036—5039 | 10.1128/aac.00485-16 |
| Mygind1998 | genetics, taxonomy | Mycoplasma hominis | 1998 |
Mygind, T.; Birkelund, S.; Christiansen, G. |
DNA sequencing reveals limited heterogeneity in the 16S rRNA gene from the rrnB operon among five Mycoplasma hominis isolates. | International Journal of Systematic Bacteriology | 48(3), page(s): 1067—1071 | 10.1099/00207713-48-3-1067 |
| Naemura1979 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, clinical sources | Klebsiella spp., Klebsiella pneumoniae | 1979 |
Naemura, Laurie G.; Bagley, Susan T.; Seidler, Ramon J.; Kaper, James B.; Colwell, R. R. |
Numerical taxonomy of Klebsiella pneumoniae strains isolated from clinical and nonclinical sources. | Current Microbiology | 2(3), page(s): 175—180 | 10.1007/bf02605878 |
| Nagai2009 | summary, general characteristics, enzymes | Parasutterella excrementihominis | 2009 |
Nagai, F.; Morotomi, M.; Sakon, H.; Tanaka, R. |
Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 59(7), page(s): 1793—1797 | 10.1099/ijs.0.002519-0 |
| Nagai2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Alistipes indistinctus, Odoribacter laneus | 2010 |
Nagai, Fumiko; Morotomi, Masami; Watanabe, Yohei; Sakon, Hiroshi; Tanaka, Ryuichiro |
Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces. | International Journal of Systematic and Evolutionary Microbiology | 60(6), page(s): 1296—1302 | 10.1099/ijs.0.014571-0 |
| Nagai2010a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Slackia piriformis, Collinsella tanakaei | 2010 |
Nagai, Fumiko; Watanabe, Yohei; Morotomi, Masami |
Slackia piriformis sp. nov. and Collinsella tanakaei sp. nov., new members of the family Coriobacteriaceae, isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 60(11), page(s): 2639—2646 | 10.1099/ijs.0.017533-0 |
| Nagel1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus niacini | 1991 |
Nagel, M.; Andreesen, J. R. |
Bacillus niacini sp. nov., a Nicotinate-Metabolizing Mesophile Isolated from Soil. | International Journal of Systematic Bacteriology | 41(1), page(s): 134—139 | 10.1099/00207713-41-1-134 |
| Nakamura1973 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium absonum, Clostridium paraperfringens | 1973 |
Nakamura, S.; Shimamura, T.; Hayase, M.; Nishida, S. |
Numerical Taxonomy of Saccharolytic Clostridia, Particularly Clostridium perfringens-Like Strains: Descriptions of Clostridium absonum sp. n. and Clostridium paraperfringens. | International Journal of Systematic Bacteriology | 23(4), page(s): 419—429 | 10.1099/00207713-23-4-419 |
| Nakamura1975 | summary, general characteristics, enzymes, acid from carbohydrates | Clostridium bifermentans, Clostridium Sordellii | 1975 |
Nakamura, S.; Shimamura, T.; Hayashi, H.; Nishida, S. |
Reinvestigation of the Taxonomy of Clostridium Bifermentans and Clostridium Sordellii. | Journal of Medical Microbiology | 8(2), page(s): 299—309 | 10.1099/00222615-8-2-299 |
| Nakamura1979 | summary, general characteristics, acid from carbohydrates, health, tetanus | Clostridium tetani, Clostridium cochleatum | 1979 |
Nakamura, S.; Okado, I.; Abe, T.; Nishida, S. |
Taxonomy of Clostridium tetani and Related Species. | Journal of General Microbiology | 113(1), page(s): 29—35 | 10.1099/00221287-113-1-29 |
| Nakamura1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus circulans | 1983 |
Nakamura, L. K.; Swezey, J. |
Taxonomy of Bacillus circulans Jordan 1890: Base Composition and Reassociation of Deoxyribonucleic Acid. | International Journal of Systematic Bacteriology | 33(1), page(s): 46—52 | 10.1099/00207713-33-1-46 |
| Nakamura1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus thiaminolyticus | 1990 |
Nakamura, L. K. |
Bacillus thiaminolyticus sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 40(3), page(s): 242—246 | 10.1099/00207713-40-3-242 |
| Nakamura1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus brevis | 1991 |
Nakamura, L. K. |
Bacillus brevis Migula 1900 Taxonomy: Reassociation and Base Composition of DNA. | International Journal of Systematic Bacteriology | 41(4), page(s): 510—515 | 10.1099/00207713-41-4-510 |
| Nakamura1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus agri, Bacillus centrosporus | 1993 |
Nakamura, L. K. |
DNA Relatedness of Bacillus brevis Migula 1900 Strains and Proposal of Bacillus agri sp. nov., nom. rev., and Bacillus centrosporus sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 43(1), page(s): 20—25 | 10.1099/00207713-43-1-20 |
| Nakamura1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brevibacillus agri | 1997 |
Nakamura, L. K. |
Reclassification of Bacillus pulvifaciens Group II as Brevibacillus agri. | Current Microbiology | 34(4), page(s): 233—237 | 10.1007/s002849900175 |
| Nakamura1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus pseudomycoides | 1998 |
Nakamura, L. K. |
Bacillus pseudomycoides sp. nov. | International Journal of Systematic Bacteriology | 48(3), page(s): 1031—1035 | 10.1099/00207713-48-3-1031 |
| Nakazawa1999 | summary, general characteristics, enzymes, metabolites, utilisation, oral cavity | Cryptobacterium curtum | 1999 |
Nakazawa, Futoshi; Poco, Sergio E.; Ikeda, Tetsuro; Sato, Michiko; Kalfas, Sotos; Sundqvist, Göran; Hoshino, Etsuro |
Cryptobacterium curtum gen. nov., sp. nov., a new genus of Gram-positive anaerobic rod isolated from human oral cavities. | International Journal of Systematic and Evolutionary Microbiology | 49(3), page(s): 1193—1200 | 10.1099/00207713-49-3-1193 |
| Nakazawa2000 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Mogibacterium pumilum, Mogibacterium vescum, Mogibacterium timidum | 2000 |
Nakazawa, F.; Sato, M.; Poco, S. E.; Hashimura, T.; Ikeda, T.; Kalfas, S.; Sundqvist, G.; Hoshino, E. |
Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(2), page(s): 679—688 | 10.1099/00207713-50-2-679 |
| Nakazawa2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Mogibacterium neglectum, Mogibacterium diversum | 2002 |
Nakazawa, Futoshi; Poco, Sergio E.; Sato, Michiko; Ikeda, Tetsuro; Kalfas, Sotos; Sundqvist, Göran; Hoshino, Etsuro |
Taxonomic characterization of Mogibacterium diversum sp. nov. and Mogibacterium neglectum sp. nov., isolated from human oral cavities. | International Journal of Systematic and Evolutionary Microbiology | 52(1), page(s): 115—122 | 10.1099/00207713-52-1-115 |
| Nam2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, water source | Oceanobacillus caeni | 2008 |
Nam, J.-H.; Bae, W.; Lee, D.-H. |
Oceanobacillus caeni sp. nov., isolated from a Bacillus-dominated wastewater treatment system in Korea. | International Journal of Systematic and Evolutionary Microbiology | 58(5), page(s): 1109—1113 | 10.1099/ijs.0.65335-0 |
| Nazina2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Geobacillus subterraneus, Geobacillus uzenensis, Geobacillus stearothermophilus, Geobacillus thermocatenulatus, Geobacillus thermoleovorans, Geobacillus kaustophilus, Geobacillus thermodenitrificans | 2001 |
Nazina, T. N.; Tourova, T. P.; Poltaraus, A. B.; Novikova, E. V.; Grigoryan, A. A.; Ivanova, A. E.; Lysenko, A. M.; Petrunyaka, V. V.; Osipov, G. A.; Belyaev, S. S.; Ivanov, M. V. |
Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. th. | International Journal of Systematic and Evolutionary Microbiology | 51(2), page(s): 433—446 | 10.1099/00207713-51-2-433 |
| Nazina2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Geobacillus gargensis, Geobacillus vulcani | 2004 |
Nazina, Tamara N.; Lebedeva, Elena V.; Poltaraus, Andrei B.; Tourova, Tatyana P.; Grigoryan, Alexandre A.; Sokolova, Diyana Sh.; Lysenko, Anatoliy M.; Osipov, George A. |
Geobacillus gargensis sp. nov., a novel thermophile from a hot spring, and the reclassification of Bacillus vulcani as Geobacillus vulcani comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(6), page(s): 2019—2024 | 10.1099/ijs.0.02932-0 |
| Ndongo2016 | summary, general characteristics | Christensenella massiliensis | 2016 |
Ndongo, S.; Khelaifia, S.; Fournier, P.-E.; Raoult, D. |
Christensenella massiliensis, a new bacterial species isolated from the human gut. | New Microbes and New Infections | 12, page(s): 69—70 | 10.1016/j.nmni.2016.04.014 |
| Ndongo2016a | summary | Christensenella timonensis | 2016 |
Ndongo, S.; Dubourg, G.; Khelaifia, S.; Fournier, P.-E.; Raoult, D. |
Christensenella timonensis, a new bacterial species isolated from the human gut. | New Microbes and New Infections | 13, page(s): 32—33 | 10.1016/j.nmni.2016.05.010 |
| Ndongo2017 | summary, general characteristics | Actinomyces provencensis, Corynebacterium bouchesdurhonense, Corynebacterium provencense, Xanthomonas massiliensis | 2017 |
Ndongo, S.; Andrieu, C.; Fournier, P.-E.; Lagier, J.-C.; Raoult, D. |
'Actinomyces provencensis' sp. nov., 'Corynebacterium bouchesdurhonense' sp. nov., 'Corynebacterium provencense' sp. nov. and 'Xanthomonas massiliensis' sp. nov., 4 new species isolated from fresh stools of obese French patients. | New Microbes and New Infections | 18, page(s): 24—27 | 10.1016/j.nmni.2017.01.013 |
| Ndongo2018 | summary, health, obesity | Gorillibacterium timonense, Vitreoscilla massiliensis | 2018 |
Ndongo, S.; Lagier, J.-C.; Raoult, D.; Fournier, P.-E. |
Gorillibacterium timonense sp. nov. and Vitreoscilla massiliensis sp. nov., two new bacterial species isolated from stool specimens of obese Amazonian patients. | New Microbes and New Infections | 23, page(s): 48—51 | 10.1016/j.nmni.2018.02.005 |
| Neill1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Campylobacter cryaerophila | 1985 |
Neill, S. D.; Campbell, J. N.; O'Brien, J. J.; Weatherup, S. T. C.; Ellis, W. A. |
Taxonomic Position of Campylobacter cryaerophila sp. nov. | International Journal of Systematic Bacteriology | 35(3), page(s): 342—356 | 10.1099/00207713-35-3-342 |
| Nemec2011 | summary, general characteristics, enzymes, utilisation, metabolites | Acinetobacter pittii, Acinetobacter nosocomialis | 2011 |
Nemec, Alexandr; Krizova, Lenka; Maixnerova, Martina; van der Reijden, Tanny J. K.; Deschaght, Pieter; Passet, Virginie; Vaneechoutte, Mario; Brisse, Sylvain; Dijkshoorn, Lenie |
Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov. (formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov. (formerly Acinetobacter genomic species 13TU). | Research in Microbiology | 162(4), page(s): 393—404 | 10.1016/j.resmic.2011.02.006 |
| Nemec2015 | clinical sources | Acinetobacter seifertii | 2015 |
Nemec, Alexandr; Krizova, Lenka; Maixnerova, Martina; Sedo, Ondrej; Brisse, Sylvain; Higgins, Paul G. |
Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus/Acinetobacter baumannii complex isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/3), page(s): 934—942 | 10.1099/ijs.0.000043 |
| Ng1963 | summary, general characteristics, metabolites | Clostridium Rubrum | 1963 |
Ng, Henry; Vaughn, Reese H. |
Clostridium Rubrum sp. n. and Other Pectinolytic Clostridia from Soil. | Journal of bacteriology | 85(5), page(s): 1104—1113 | 10.1128/jb.85.5.1104-1113.1963 |
| Nicholson1994 | summary, general characteristics, enzymes | Fusobacterium necrophorum | 1994 |
Nicholson, L. A.; Morrow, C. J.; Corner, L. A.; Hodgson, A. L. M. |
Phylogenetic Relationship of Fusobacterium necrophorum A, AB, and B Biotypes Based upon 16S rRNA Gene Sequence Analysis. | International Journal of Systematic Bacteriology | 44(2), page(s): 315—319 | 10.1099/00207713-44-2-315 |
| Nielsen1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus alcalophilus, Bacillus clausii, Bacillus pseudofirmus, Bacillus gibsonii, Bacillus agaradhaerens, Bacillus clarkii, Bacillus halmapalus, Bacillus halodurans, Bacillus horikoshii, Bacillus pseudalcalophilus | 1995 |
Nielsen, P.; Fritze, D.; Priest, F. G. |
Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. | Microbiology | 141(7), page(s): 1745—1761 | 10.1099/13500872-141-7-1745 |
| Niemi2001 | water source | Ewingella americana | 2001 |
Niemi, R. M.; Heikkilä, M. P.; Lahti, K.; Kalso, S.; Niemelä, S. I. |
Comparison of methods for determining the numbers and species distribution of coliform bacteria in well water samples. | Journal of Applied Bacteriology | 90(6), page(s): 850—858 | 10.1046/j.1365-2672.2001.01314.x |
| Niggemyer2001 | summary, general characteristics, enzymes, metabolites, utilisation | Desulfitobacterium hafniense | 2001 |
Niggemyer, Allison; Spring, Stefan; Stackebrandt, Erko; Rosenzweig, R. Frank |
Isolation and Characterization of a Novel As(V)-Reducing Bacterium: Implications for Arsenic Mobilization and the Genus Desulfitobacterium. | Applied and Environmental Microbiology | 67(12), page(s): 5568—5580 | 10.1128/aem.67.12.5568-5580.2001 |
| Nikolaitchouk2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, urinary tract infection, clinical sources | Actinomyces urogenitalis | 2000 |
Nikolaitchouk, N.; Hoyles, L.; Falsen, E.; Grainger, J. M.; Collins, M. D. |
Characterization of Actinomyces isolates from samples from the human urogenital tract: description of Actinomyces urogenitalis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1649—1654 | 10.1099/00207713-50-4-1649 |
| Nikolaitchouk2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus coleohominis | 2001 |
Nikolaitchouk, N.; Wacher, C.; Falsen, E.; Andersch, B.; Collins, M. D.; Lawson, P. A. |
Lactobacillus coleohominis sp. nov., isolated from human sources. | International Journal of Systematic and Evolutionary Microbiology | 51(6), page(s): 2081—2085 | 10.1099/00207713-51-6-2081 |
| Nishimura1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Acinetobacter radioresistens | 1988 |
Nishimura, Y.; Ino, T.; Iizuka, H. |
Acinetobacter radioresistens sp. nov. Isolated from Cotton and Soil. | International Journal of Systematic Bacteriology | 38(2), page(s): 209—211 | 10.1099/00207713-38-2-209 |
| Nishiyama2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides graminisolvens | 2009 |
Nishiyama, T.; Ueki, A.; Kaku, N.; Watanabe, K.; Ueki, K. |
Bacteroides graminisolvens sp. nov., a xylanolytic anaerobe isolated from a methanogenic reactor treating cattle waste. | International Journal of Systematic and Evolutionary Microbiology | 59(8), page(s): 1901—1907 | 10.1099/ijs.0.008268-0 |
| NorskovLauritsen2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Aggregatibacter actinomycetemcomitans, Aggregatibacter aphrophilus, Aggregatibacter segnis, Aggregatibacter aphrophilus | 2006 |
Nørskov-Lauritsen, Niels; Kilian, Mogens |
Reclassification of Actinobacillus actinomycetemcomitans, Haemophilus aphrophilus, Haemophilus paraphrophilus and Haemophilus segnis as Aggregatibacter actinomycetemcomitans gen. nov., comb. nov., Aggregatibacter aphrophilus comb. nov. and Aggregatibacter segnis comb. nov., and emended description of Aggregatibacter aphrophilus to include V factor-dependent and V factor-independent isolates. | International Journal of Systematic and Evolutionary Microbiology | 56(9), page(s): 2135—2146 | 10.1099/ijs.0.64207-0 |
| NorskovLauritsen2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Haemophilus sputorum | 2012 |
Nørskov-Lauritsen, Niels; Bruun, Brita; Andersen, Camilla; Kilian, Mogens |
Identification of haemolytic Haemophilus species isolated from human clinical specimens and description of Haemophilus sputorum sp. nov. | International Journal of Medical Microbiology | 302(2), page(s): 78—83 | 10.1016/j.ijmm.2012.01.001 |
| Nordhoff2005 | summary, general characteristics, enzymes, metabolites, utilisation | Treponema berlinense, Treponema porcinum | 2005 |
Nordhoff, Marcel; Taras, David; Macha, Moritz; Tedin, Karsten; Busse, Hans-Jürgen; Wieler, Lothar H. |
Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces. | International Journal of Systematic and Evolutionary Microbiology | 55(4), page(s): 1675—1680 | 10.1099/ijs.0.63388-0 |
| Nouioui2018 | genetics, taxonomy | Pseudoclavibacter alba, Propionimicrobium lymphophilum, Actinomyces israelii, Bifidobacterium indicum, Bifidobacterium pullorum subsp. saeculare, Actinomyces dentalis, Cellulomonas flavigena, Corynebacterium accolens, Corynebacterium diphtheriae, Corynebacterium doosanense, Corynebacterium efficiens, Corynebacterium urealyticum, Corynebacterium flavescens, Corynebacterium variabile, Gleimia europaea, Janibacter hoylei, Mycobacterium gordonae, Rothia kristinae, Senegalimassilia anaerobia, Alloscardovia omnicolens, Corynebacterium pseudodiphtheriticum, Fannyhessea vaginae, Mycobacterium interjectum, Mycobacterium colombiense, Mycobacterium kansasii, Mycobacterium simiae, Nocardia asteroides, Oerskovia turbata, Winkia neuii, Streptomyces albus, Tsukamurella pulmonis | 2018 |
Nouioui, Imen; Carro, Lorena; García-López, Marina; Meier-Kolthoff, Jan P.; Woyke, Tanja; Kyrpides, Nikos C.; Pukall, Rüdiger; Klenk, Hans-Peter; Goodfellow, Michael; Göker, Markus |
Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Frontiers in Microbiology | 9, | 10.3389/fmicb.2018.02007 |
| Nozue1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Shewanella algae | 1992 |
Nozue, H.; Hayashi, T.; Hashimoto, Y.; Ezaki, T.; Hamasaki, K.; Ohwada, K.; Terawaki, Y. |
Isolation and Characterization of Shewanella alga from Human Clinical Specimens and Emendation of the Description of S. alga Simidu et al., 1990, 335. | International Journal of Systematic Bacteriology | 42(4), page(s): 628—634 | 10.1099/00207713-42-4-628 |
| Nwaiwu2020 | taxonomy, educational | Listeria grayi, Listeria innocua, Listeria ivanovii, Listeria monocytogenes, Listeria seeligeri, Listeria welshimeri | 2020 |
Nwaiwu, Ogueri |
What are the recognized species of the genus Listeria?. | Access Microbiology | 2(9), | 10.1099/acmi.0.000153 |
| O'Hara1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Enterobacter hormaechei | 1989 |
O'Hara, C. M.; Steigerwalt, A. G.; Hill, B. C.; Farmer, J. J.; Fanning, G. R.; Brenner, D. J. |
Enterobacter hormaechei, a new species of the family Enterobacteriaceae formerly known as enteric group 75. | Journal of Clinical Microbiology | 27, page(s): 2046—2049 | 10.1128/jcm.27.9.2046-2049.1989 |
| O'Hara2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Proteus mirabilis, Proteus vulgaris, Proteus penneri, Proteus myxofaciens, Providencia alcalifaciens, Providencia rettgeri, Providencia rustigianii, Providencia stuartii, Morganella morganii | 2000 |
O'Hara, Caroline Mohr; Brenner, Frances W.; Miller, J. Michael |
Classification, Identification, and Clinical Significance of Proteus, Providencia and Morganella. | Clinical Microbiology Reviews | 13(4), page(s): 534—546 | 10.1128/cmr.13.4.534-546.2000 |
| OharaNemoto1997 | genetics, taxonomy | Abiotrophia defectiva | 1997 |
Ohara-Nemoto, Y.; Tajika, S.; Sasaki, M.; Kaneko, M. |
Identification of Abiotrophia adiacens and Abiotrophia defectiva by 16S rRNA gene PCR and restriction fragment length polymorphism analysis. | Journal of Clinical Microbiology | 35(10), page(s): 2458—2463 | 10.1128/jcm.35.10.2458-2463.1997 |
| Oki2012 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus saniviri, Lactobacillus senioris | 2012 |
Oki, Kaihei; Kudo, Yuko; Watanabe, Koichi |
Lactobacillus saniviri sp. nov. and Lactobacillus senioris sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt/3), page(s): 601—607 | 10.1099/ijs.0.031658-0 |
| Olsen1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Lactobacillus uli, Lactobacillus rimae, Lactobacillus minutus, Streptococcus parvulus = Lancefieldella parvula | 1991 |
Olsen, I.; Johnson, J. L.; Moore, L. V. H.; Moore, W. E. C. |
Lactobacillus uli sp. nov. and Lactobacillus rimae sp. nov. from the Human Gingival Crevice and Emended Descriptions of Lactobacillus minutus and Streptococcus parvulus. | International Journal of Systematic Bacteriology | 41(2), page(s): 261—266 | 10.1099/00207713-41-2-261 |
| On1995 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter hyointestinalis subsp. lawsonii, Campylobacter hyointestinalis subsp. hyointestinalis | 1995 |
On, S. L. W.; Bloch, B.; Holmes, B.; Hoste, B.; Vandamme, P. |
Campylobacter hyointestinalis subsp. lawsonii subsp. nov., Isolated from the Porcine Stomach, and an Emended Description of Campylobacter hyointestinalis. | International Journal of Systematic Bacteriology | 45(4), page(s): 767—774 | 10.1099/00207713-45-4-767 |
| O'Neal2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium amazonense | 2015 |
O'Neal, Lindsey; Obregón-Tito, Alexandra J.; Tito, Raul Y.; Ozga, Andrew T.; Polo, Susan I.; Lewis, Cecil M.; Lawson, Paul A. |
Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru. | Anaerobe | 35, page(s): 33—37 | 10.1016/j.anaerobe.2015.06.005 |
| Oren2000 | genetics, taxonomy | Halanaerobium genus | 2000 |
Oren, A. |
Change of the names Haloanaerobiales, Haloanaerobiaceae and Haloanaerobium to Halanaerobiales, Halanaerobiaceae and Halanaerobium, respectively, and further nomenclatural changes within the order Halanaerobiales. | International Journal of Systematic and Evolutionary Microbiology | 50(6), page(s): 2229—2230 | 10.1099/00207713-50-6-2229 |
| Osman2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus pasadenensis, Paenibacillus barengoltzii | 2006 |
Osman, Shariff; Satomi, Masataka; Venkateswaran, Kasthuri |
Paenibacillus pasadenensis sp. nov. and Paenibacillus barengoltzii sp. nov., isolated from a spacecraft assembly facility. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1509—1514 | 10.1099/ijs.0.64085-0 |
| Otta2014 | pancreatitis | Achromobacter xylosoxidans | 2014 |
Otta, Sarita; Swain, Bichitrananda; Panigrahy, Rajashree; Panda, Kirtika; Debata, Nagen Kumar |
Achromobacter xylosoxidans: a rare pathogen for community-acquired acute pancreatitis. | JMM Case Reports | 1(3), | 10.1099/jmmcr.0.t00022 |
| Owen1998 | genetics, taxonomy | Helicobacter | 1998 |
Owen, R. J. |
Helicobacter - species classification and identification. | British Medical Bulletin | 54(1), page(s): 17—30 | 10.1093/oxfordjournals.bmb.a011667 |
| Padmanabhan2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Megasphaera massiliensis | 2013 |
Padmanabhan, Roshan; Lagier, Jean-Christophe; Dangui, Nicole Prisca Makaya; Michelle, Caroline; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Megasphaera massiliensis sp. nov. | Standards in Genomic Sciences | 8(3), page(s): 525—538 | 10.4056/sigs.4077819 |
| Padmanabhan2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Collinsella massiliensis | 2014 |
Padmanabhan, Roshan; Dubourg, Gregory; Lagier, Jean-Christophe; Nguyen, Thi-Thien; Couderc, Carine; Rossi-Tamisier, Morgane; Caputo, Aurelia; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Collinsella massiliensis sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 1144—1158 | 10.4056/sigs.5399696 |
| Padmanabhan2014a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Corynebacterium ihumii | 2014 |
Padmanabhan, Roshan; Dubourg, Grégory; Lagier, Jean-Christophe; Couderc, Carine; Michelle, Caroline; Raoult, Didier; Fournier, Pierre-Edouard |
Genome sequence and description of Corynebacterium ihumii sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 1128—1143 | 10.4056/sigs.5149006 |
| Paek2017 | summary, general characteristics, metabolites | Absiella argi, Eubacterium dolichum, Absiella tortuosum | 2017 |
Paek, Jayoung; Shin, Yeseul; Kim, Joong-Su; Kim, Hongik; Kook, Joong-Ki; Paek, Woon Kee; Chang, Young-Hyo |
Description of Absiella argi gen. nov., sp. nov., and transfer of Eubacterium dolichum and Eubacterium tortuosum to the genus Absiella as Absiella dolichum comb. nov. and Absiella tortuosum comb. nov. | Anaerobe | 48, page(s): 70—75 | 10.1016/j.anaerobe.2017.07.006 |
| Paine1919 | summary, general characteristics, acid from carbohydrates, metabolites, food source (mushroom) | Pseudomonas tolaasii | 1919 |
Paine, Sydney G. |
Studies In Bacteriosis II.: A Brown Blotch Disease of Cultivated Mushrooms. | Annals of Applied Biology | 5(3-4), page(s): 206—219 | 10.1111/j.1744-7348.1919.tb05291.x |
| Palacios2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Corynebacterium xerosis, Corynebacterium freneyi, Corynebacterium hansenii, Corynebacterium amycolatum, | 2010 |
Palacios, Lucía; Vela, Ana Isabel; Molin, Kent; Fernández, Ana; Latre, Maria Victoria; Chacón, Gema; Falsen, Enevold; Fernández-Garayzábal, José Francisco |
Characterization of Some Bacterial Strains Isolated from Animal Clinical Materials and Identified as Corynebacterium xerosis by Molecular Biological Techniques. | Journal of Clinical Microbiology | 48(9), page(s): 3138—3145 | 10.1128/jcm.02373-09 |
| Palleroni1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Stenotrophomonas maltophilia | 1993 |
Palleroni, N. J.; Bradbury, J. F. |
Stenotrophomonas, a New Bacterial Genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983. | International Journal of Systematic Bacteriology | 43(3), page(s): 606—609 | 10.1099/00207713-43-3-606 |
| Palmer2018 | summary, general characteristics, enzymes, metabolites, utilisation | Mixta calida, Mixta intestinalis, Erwinia teleogrylli | 2018 |
Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P. A.; Avontuur, Juanita R.; Chan, Wai-Yin; van Zyl, Elritha; Blom, Jochen; Venter, Stephanus N. |
Mixta gen. nov., a new genus in the Erwiniaceae. | International Journal of Systematic and Evolutionary Microbiology | 68(4), page(s): 1396—1407 | 10.1099/ijsem.0.002540 |
| Palmisano2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus sonorensis | 2001 |
Palmisano, M. M.; Nakamura, L. K.; Duncan, K. E.; Istock, C. A.; Cohan, F. M. |
Bacillus sonorensis sp. nov., a close relative of Bacillus licheniformis, isolated from soil in the Sonoran Desert, Arizona. | International Journal of Systematic and Evolutionary Microbiology | 51(5), page(s): 1671—1679 | 10.1099/00207713-51-5-1671 |
| Pantucek2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Staphylococcus simiae | 2005 |
Pantucek R, Sedlácek I, Petrás P, Koukalová D, Svec P, Stetina V, Vancanneyt M, Chrastinová L, Vokurková J, Rusicková V, Doskar J, Swings J, Hájek V. |
Staphylococcus simiae sp. nov., isolated from South American squirrel monkeys. | International Journal of Systematic and Evolutionary Microbiology | 55(5), page(s): 1953—1958 | 10.1099/ijs.0.63590-0 |
| Park2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blautia stercoris | 2012 |
Park, Seong-Kyu; Kim, Min-Soo; Roh, Seong Woon; Bae, Jin-Woo |
Blautia stercoris sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt/4), page(s): 776—779 | 10.1099/ijs.0.031625-0 |
| Park2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blautia faecis | 2013 |
Park, Seong-Kyu; Kim, Min-Soo; Bae, Jin-Woo |
Blautia faecis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/2), page(s): 599—603 | 10.1099/ijs.0.036541-0 |
| Parker2016 | taxonomy | Acetoanaerobium sticklandii | 2016 |
Parker, Charles Thomas; Garrity, George M. |
Nomenclature Abstract for Acetoanaerobium sticklandii (Stadtman and McClung 1957) Galperin et al. 2016. | Nomenclature Abstract | page(s): 1 | 10.1601/nm.29472 |
| Parker2020 | health, cancer, inflammation, mental health | Alistipes finegoldii, Alistipes ihumii, Alistipes indistinctus, Alistipes inops, Alistipes obesi, Alistipes onderdonkii, Alistipes onderdonkii subsp. vulgaris, Alistipes putredinis, Alistipes senegalensis, Alistipes shahii, Alistipes timonensis | 2020 |
Parker, Bianca J.; Wearsch, Pamela A.; Veloo, Alida C. M.; Rodriguez-Palacios, Alex |
The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health. | Frontiers in Immunology | 11, | 10.3389/fimmu.2020.00906 |
| Patel2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Ezakiella peruensis | 2015 |
Patel, Nisha B.; Tito, Raul Y.; Obregón-Tito, Alexandra J.; O'Neal, Lindsey; Trujillo-Villaroel, Omar; Marin-Reyes, Luis; Troncoso-Corzo, Luzmila; Guija-Poma, Emilio; Hamada, Moriyuki; Uchino, Yoshihito; Lewis, Cecil M.; Lawson, Paul A. |
Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru. | Anaerobe | 32, page(s): 43—48 | 10.1016/j.anaerobe.2014.12.002 |
| Patel2016 | summary, general characteristics, enzymes, metabolites, utilisation | Peptoniphilus catoniae | 2016 |
Patel, Nisha B.; Tito, Raul Y.; Obregón-Tito, Alexandra J.; O'Neal, Lindsey; Trujillo-Villaroel, Omar; Marin-Reyes, Luis; Troncoso-Corzo, Luzmila; Guija-Poma, Emilio; Lewis, Cecil M.; Lawson, Paul A. |
Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community. | International Journal of Systematic and Evolutionary Microbiology | 66(5), page(s): 2019—2024 | 10.1099/ijsem.0.000985 |
| Patel2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Citroniella saccharovorans | 2019 |
Patel, Nisha B.; Obregón-Tito, Alexandra J.; Tito, Raul Y.; Trujillo-Villaroel, Omar; Marin-Reyes, Luis; Troncoso-Corzo, Luzmila; Guija-Poma, Emilio; Jr, Cecil M. Lewis; Lawson, Paul A. |
Citroniella saccharovorans gen. nov. sp. nov., a member of the family Peptoniphilaceae isolated from a human fecal sample from a coastal traditional community member. | International Journal of Systematic and Evolutionary Microbiology | 69(4), page(s): 1142—1148 | 10.1099/ijsem.0.003287 |
| Patel2020 | summary, general characteristics | Alkalihalobacillus alcalophilus, Neobacillus bataviensis, Neobacillus soli, Peribacillus psychrosaccharolyticus | 2020 |
Patel, Sudip; Gupta, Radhey S. |
A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 70(1), page(s): 406—438 | 10.1099/ijsem.0.003775 |
| PathomAree2006 | summary, general characteristics, enzymes, metabolites | Dermacoccus nishinomiyaensis, Dermacoccus barathri | 2006 |
Pathom-aree, Wasu; Nogi, Yuichi; Ward, Alan C.; Horikoshi, Koki; Bull, Alan T.; Goodfellow, Michael |
Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench. | International Journal of Systematic and Evolutionary Microbiology | 56(10), page(s): 2303—2307 | 10.1099/ijs.0.64250-0 |
| Pati2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides helcogenes | 2011 |
Pati, Amrita; Gronow, Sabine; Zeytun, Ahmet; Lapidus, Alla; Nolan, Matt; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne; Rohde, Manfred; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter; Lucas, Susan |
Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T). | Standards in Genomic Sciences | 4(1), page(s): 45—53 | 10.4056/sigs.1513795 |
| Patureau1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microvirgula aerodenitrificans | 1998 |
Patureau, D.; Godon, J.-J.; Dabert, P.; Bouchez, T.; Bernet, N.; Delgenes, J. P.; Moletta, R. |
Microvirgula aerodenitrificans gen. nov., sp. nov., a new Gram-negative bacterium exhibiting co-respiration of oxygen and nitrogen oxides up to oxygen-saturated conditions. | International Journal of Systematic Bacteriology | 48(3), page(s): 775—782 | 10.1099/00207713-48-3-775 |
| Pedersen2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus saerimneri | 2004 |
Pedersen, Carsten; Roos, Stefan |
Lactobacillus saerimneri sp. nov., isolated from pig faeces. | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1365—1368 | 10.1099/ijs.0.03057-0 |
| Pedersen2016 | antibiotics, blood infection | Actinotignum schaalii | 2016 |
Pedersen, H.; Senneby, E.; Rasmussen, M. |
Clinical and microbiological features of Actinotignum bacteremia: a retrospective observational study of 57 cases. | European Journal of Clinical Microbiology and Infectious Diseases | 36(5), page(s): 791—796 | 10.1007/s10096-016-2862-y |
| Pederson1938 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus fermentum, Lactobacillus buchneri subsp. buchneri, Levilactobacillus brevis | 1938 |
Pederson, C. S. |
The Gas-producing Species of the Genus Lactobacillus. | Journal of bacteriology | 35, page(s): 95—108 | 10.1128/jb.35.2.95-108.1938 |
| Pettersson2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus siralis | 2000 |
Pettersson, B.; de Silva, S. K.; Uhlén, M.; Priest, F. G. |
Bacillus siralis sp. nov., a novel species from silage with a higher order structural attribute in the 16S rRNA genes. | International Journal of Systematic and Evolutionary Microbiology | 50(6), page(s): 2181—2187 | 10.1099/00207713-50-6-2181 |
| Pettersson2000a | genetics, taxonomy | Mycoplasma hominis | 2000 |
Pettersson, B.; Tully, J. G.; Bölske, G.; Johansson, K. E. |
Updated phylogenetic description of the Mycoplasma hominis cluster (Weisburg et al. 1989) based on 16S rDNA sequences. | International Journal of Systematic and Evolutionary Microbiology | 50(1), page(s): 291—301 | 10.1099/00207713-50-1-291 |
| Pfleiderer2013 | summary, general characteristics, anorexia nervosa, compilation | Blastococcus massiliensis, Corynebacterium ureicelerivorans, Microbacterium aurum, Streptomyces massiliensis, Alistipes marseilloanorexicus, Bacteroides timonensis, Chryseobacterium hominis, Epilithonimonas hominis, Dorea massiliensis, Candidatus Dorea massiliensis, Facklamia tabacinasalis, Holdemania massiliensis, Lysinibacillus fusiformis, Soleaferrea massiliensis, Staphylococcus caprae, Rossellomorea marisflavi, Bacillus massilioanorexius, Bacillus velezensis variant polyfermenticus, Intestinimonas butyriciproducens, Candidatus Stoquefichus massiliensis, compilation | 2013 |
Pfleiderer, A.; Lagier, J.-C.; Armougom, F.; Robert, C.; Vialettes, B.; Raoult, D. |
Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample. | European Journal of Clinical Microbiology and Infectious Diseases | 32(11), page(s): 1471—1481 | 10.1007/s10096-013-1900-2 |
| Pfleiderer2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Alistipes ihumii | 2014 |
Pfleiderer, Anne; Mishra, Ajay Kumar; Lagier, Jean-Christophe; Robert, Catherine; Caputo, Aurelia; Raoult, Didier; Fournier, Pierre-Edouard |
Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 1221—1235 | 10.4056/sigs.4698398 |
| Pham2017 | summary, general characteristics, undernourishment | Marasmitruncus massiliensis, Clostridium culturomicum, Blautia provencensis, Bacillus caccae, Ornithinibacillus massiliensis | 2017 |
Pham, T.-P.-T.; Cadoret, F.; Alou, M. Tidjani; Brah, S.; Diallo, B. Ali; Diallo, A.; Sokhna, C.; Delerce, J.; Fournier, P.-E.; Million, M.; Raoult, D. |
'Marasmitruncus massiliensis' gen. nov., sp. nov., 'Clostridium culturomicum' sp. nov., 'Blautia provencensis' sp. nov., 'Bacillus caccae' sp. nov. and 'Ornithinibacillus massiliensis' sp. nov., isolated from stool samples of undernourished African children. | New Microbes and New Infections | 19, page(s): 38—42 | 10.1016/j.nmni.2017.05.005 |
| Pham2017a | summary, general characteristics, undernourishment | Urmitella timonensis, Blautia marasmi, Lachnoclostridium pacaense, Bacillus marasmi, Anaerotruncus rubiinfantis | 2017 |
Pham, T.-P.-T.; Cadoret, F.; Alou, M. Tidjani; Brah, S.; Diallo, B. Ali; Diallo, A.; Sokhna, C.; Delerce, J.; Fournier, P.-E.; Million, M.; Raoult, D. |
'Urmitella timonensis' gen. nov., sp. nov., 'Blautia marasmi' sp. nov., 'Lachnoclostridium pacaense' sp. nov., 'Bacillus marasmi' sp. nov. and 'Anaerotruncus rubiinfantis' sp. nov., isolated from stool samples of undernourished African children. | New Microbes and New Infections | 17, page(s): 84—88 | 10.1016/j.nmni.2017.02.004 |
| Pham2017b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Paenibacillus bouchesdurhonensis, Paenibacillus rubinfantis, Paenibacillus senegalimassiliensis, Paenibacillus tuaregi | 2017 |
Pham, T.-P.-T.; Alou, M. Tidjani; Traore, S. I.; Brah, S.; Diallo, B. Ali; Diallo, A.; Sokhna, C.; Baptiste, E.; Levasseur, A.; Fournier, P.-E.; Cadoret, F.; Raoult, D. |
Non-contiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics. | New Microbes and New Infections | 20, page(s): 1—13 | 10.1016/j.nmni.2017.07.004 |
| Pichinoty1984 | summary, general characteristics, utilisation | Bacillus benzoevorans | 1984 |
Pichinoty, F.; Asselineau, J.; Mandel, M. |
[Biochemical characterization of Bacillus benzoevorans sp. nov., a new filamentous, sheathed mesophilic species, degrading various aromatic acids and phenols]. | Annales de microbiologie | 135B, page(s): 209—217 | 6508078 PMID |
| Pitarangsi1982 | summary, clinical, diarrhoea | Aeromonas hydrophila, Plesiomonas shigelloides | 1982 |
Pitarangsi, C.; Echeverria, P.; Whitmire, R.; Tirapat, C.; Formal, S.; Dammin, G. J.; Tingtalapong, M. |
Enteropathogenicity of Aeromonas hydrophila and Plesiomonas shigelloides: prevalence among individuals with and without diarrhea in Thailand. | Infection and Immunity | 35(2), page(s): 666—673 | 10.1128/iai.35.2.666-673.1982 |
| Poco1996 | summary, general characteristics, enzymes, metabolites, oral cavity, lesions | Eubacterium exiguum | 1996 |
Poco, S.E.; Nakazawa, F.; Ikeda, T.; M., Sato; T., Sato; Hoshino, E. |
Eubacterium exiguum sp. nov., Isolated from Human Oral Lesions. | International Journal of Systematic Bacteriology | 46(4), page(s): 1120—1124 | 10.1099/00207713-46-4-1120 |
| Podschun2001 | clinical sources | Hafnia alvei | 2001 |
Podschun, R.; Fischer, A.; Ullmann, U. |
Characterisation of Hafnia alvei isolates from human clinical extra-intestinal specimens: haemagglutinins, serum resistance and siderophore synthesis. | Journal of Medical Microbiology | 50(3), page(s): 208—214 | 10.1099/0022-1317-50-3-208 |
| Pohl1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Actinobacillus pleuropneumoniae | 1983 |
Pohl, S.; Bertschinger, H. U.; Frederiksen, W.; Mannheim, W. |
Transfer of Haemophilus pleuropneumoniae and the Pasteurella haemolytica-Like Organism Causing Porcine Necrotic Pleuropneumonia to the Genus Actinobacillus (Actinobacillus pleuropneumoniae comb. nov.) on the Basis of Phenotypic and Deoxyribonucleic Acid Relatedness. | International Journal of Systematic Bacteriology | 33(3), page(s): 510—514 | 10.1099/00207713-33-3-510 |
| Poindexter1964 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Brevundimonas bacteroides, Brevundimonas aurantiaca, Asticcacaulis excentricus | 1964 |
Poindexter, J. S. |
Biological Properties and Classification of the Caulobacter Group. | Bacteriological reviews | 28, page(s): 231—295 | 10.1128/br.28.3.231-295.1964 |
| Pompilio2019 | antibiotic, antimicrobial | Streptococcus equinus | 2019 |
Pompilio, Arianna; Bonaventura, Giovanni Di; Gherardi, Giovanni |
An Overview on Streptococcus bovis/Streptococcus equinus Complex Isolates: Identification to the Species/Subspecies Level and Antibiotic Resistance. | International Journal of Molecular Sciences | 20(3), page(s): 480 | 10.3390/ijms20030480 |
| Popoff1976 | summary, general characteristics, enzymes, utilisation, metabolites | Aeromonas hydrophila, Aeromonas sobria | 1976 |
Popoff, M.; VeEron, M. |
A Taxonomic Study of the Aeromonas hydrophila-Aeromonas punctata Group. | Journal of General Microbiology | 94(1), page(s): 11—22 | 10.1099/00221287-94-1-11 |
| Popp2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food contamination | Pantoea gaviniae, Pantoea calida = Mixta calida | 2010 |
Popp, Alexandra; Cleenwerck, Ilse; Iversen, Carol; Vos, Paul De; Stephan, Roger |
Pantoea gaviniae sp. nov. and Pantoea calida sp. nov., isolated from infant formula and an infant formula production environment. | International Journal of Systematic and Evolutionary Microbiology | 60(12), page(s): 2786—2792 | 10.1099/ijs.0.019430-0 |
| Postgate1966 | summary, general characteristics, enzymes, metabolites, utilisation | Desulfovibrio desulfuricans, Desulfovibrio vulgaris | 1966 |
Postgate, J. R.; Campbell, L. L. |
Classification of Desulfovibrio species, the nonsporulating sulfate-reducing bacteria. | Bacteriological reviews | 30, page(s): 732—738 | 10.1128/br.30.4.732-738.1966 |
| Poyart2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus lutetiensis, Streptococcus pasteurianus, Streptococcus macedonicus | 2002 |
Poyart, C. |
Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of 'Streptococcus infantarius subsp. coli' as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype II.2 as Streptococcus pasteurianus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(4), page(s): 1247—1255 | 10.1099/ijs.0.02044-0 |
| Prakash2014 | summary, general characteristics, enzymes, metabolites, utilisation | Pelistega indica | 2014 |
Prakash, Om; Munot, Hitendra; Nimonkar, Yogesh; Sharma, Madhu; Kumbhare, Shreyas; Shouche, Yogesh S. |
Description of Pelistega indica sp. nov., isolated from human gut. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/4), page(s): 1389—1394 | 10.1099/ijs.0.059782-0 |
| Prakash2015 | summary, general characteristics, enzymes, metabolites, utilisation | Mixta intestinalis | 2015 |
Prakash, Om; Nimonkar, Yogesh; Vaishampayan, Ankita; Mishra, Mrinal; Kumbhare, Shreyas; Josef, Neetha; Shouche, Yogesh S. |
Pantoea intestinalis sp. nov., isolated from the human gut. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/10), page(s): 3352—3358 | 10.1099/ijsem.0.000419 |
| Priest1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus amyloliquefaciens | 1987 |
Priest, F. G.; Goodfellow, M.; Shute, L. A.; Berkeley, R. C. W. |
Bacillus amyloliquefaciens sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 37(1), page(s): 69—71 | 10.1099/00207713-37-1-69 |
| Priest1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus firmus, Bacillus lichenifomis, Bacillus licheniformis, Bacillus flexus, Bacillus megaterium, Peribacillus psychrosaccharolyticus | 1988 |
Priest, F. G.; Goodfellow, M.; Todd, C. |
A Numerical Classification of the Genus Bacillus. | Microbiology | 134(7), page(s): 1847—1882 | 10.1099/00221287-134-7-1847 |
| Probst1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, fermented foods | Staphylococcus condimenti, Staphylococcus carnosus subsp. utilis | 1998 |
Probst, A. J.; Hertel, C.; Richter, L.; Wassill, L.; Ludwig, W.; Hammes, W. P. |
Staphylococcus condimenti sp. nov., from soy sauce mash, and Staphylococcus carnosus (Schleifer and Fischer 1982) subsp. utilis subsp. nov. | International Journal of Systematic Bacteriology | 48(3), page(s): 651—658 | 10.1099/00207713-48-3-651 |
| Pulami2021 | utilisation | Acinetobacter stercoris, Acinetobacter guillouiae | 2021 |
Pulami, Dipen; Schauss, Thorsten; Eisenberg, Tobias; Blom, Jochen; Schwengers, Oliver; Bender, Jennifer K.; Wilharm, Gottfried; Kämpfer, Peter; Glaeser, Stefanie P. |
Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions. | Antonie van Leeuwenhoek | 114(3), page(s): 235—251 | 10.1007/s10482-021-01517-7 |
| Qiu2009 | summary, general characteristics, enzymes, metabolites, utilisation | Bacillus beijingensis, Bacillus ginsengi | 2009 |
Qiu, F.; Zhang, X.; Liu, L.; Sun, L.; Schumann, P.; Song, W. |
Bacillus beijingensis sp. nov. and Bacillus ginsengi sp. nov., isolated from ginseng root. | International Journal of Systematic and Evolutionary Microbiology | 59(4), page(s): 729—734 | 10.1099/ijs.0.65861-0 |
| Qu2008 | summary, general characteristics, enzymes, metabolites, utilisation | Flavobacterium cheniae | 2008 |
Qu, J.-H.; Li, H.-F.; Yang, J.-S.; Yuan, H.-L. |
Flavobacterium cheniae sp. nov., isolated from sediment of a eutrophic reservoir. | International Journal of Systematic and Evolutionary Microbiology | 58(9), page(s): 2186—2190 | 10.1099/ijs.0.65586-0 |
| Rainey1995b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Dietzia maris | 1995 |
Rainey, F. A.; Klatte, S.; Kroppenstedt, R. M.; Stackebrandt, E. |
Dietzia, New Genus Including Dietzia maris comb. nov., Formerly Rhodococcus maris. | International Journal of Systematic Bacteriology | 45(1), page(s): 185—199 | 10.1099/00207713-45-1-32 |
| Rainey1995 | summary, general characteristics, metabolites | Halanaerobium saccharolyticum | 1995 |
Rainey, Frederick A.; Zhilina, Tatjana N.; Boulygina, Eugenia S.; Stackebrandt, Erko; Tourova, Tatjana P.; Zavarzin, George A. |
The Taxonomic Status of the Fermentative Halophilic Anaerobic Bacteria: Description of Haloanaerobiales ord. nov., Halobacteroidaceae fam. nov., Orenia gen. nov. and further Taxonomic Rearrangements at the Genus and Species Level. | Anaerobe | 1(4), page(s): 32—36 | 10.1006/anae.1995.1018 |
| Rainey1995a | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Rhodococcus rhodochrous | 1995 |
Rainey, F. A.; Burghardt, J.; Kroppenstedt, R.; Klatte, S.; Stackebrandt, E. |
Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous. | International Journal of Systematic Bacteriology | 45(1), page(s): 101—103 | 10.1099/00207713-45-1-101 |
| RajilicStojanovic2014 | gut microbiome, compilation | compilation | 2014 |
Rajili-Stojanovi M, de Vos WM. |
The first 1000 cultured species of the human gastrointestinal microbiota. | FEMS Microbiology Reviews | 38(5), page(s): 996—1047 | 10.1111/1574-6976.12075 |
| Ralston1973 | summary, general characteristics, utilisation, clinical sources | Pseudomonas pickettii = Ralstonia pickettii Biovar Va-1&2 | 1973 |
Ralston, E.; Palleroni, N. J.; Doudoroff, M. |
Pseudomonas pickettii, a New Species of Clinical Origin Related to Pseudomonas solanacearum. | International Journal of Systematic Bacteriology | 23(1), page(s): 15—19 | 10.1099/00207713-23-1-15 |
| Ramasamy2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Aeromicrobium massiliense | 2012 |
Ramasamy, Dhamodharan; Kokcha, Sahare; Lagier, Jean-Christophe; Nguyen, Thi-Thien; Raoult, Didier; Fournier, Pierre-Edouard |
Genome sequence and description of Aeromicrobium massiliense sp. nov. | Standards in Genomic Sciences | 7(2), page(s): 246—257 | 10.4056/sigs.3306717 |
| Ramasamy2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus massiliosenegalensis | 2013 |
Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Gorlas, Aurore; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov. | Standards in Genomic Sciences | 8(2), page(s): 264—278 | 10.4056/sigs.3496989 |
| Ramasamy2013a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Dielma fastidiosa | 2013 |
Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Nguyen, Thi Tien; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family Erysipelotrichaceae. | Standards in Genomic Sciences | 8(2), page(s): 336—351 | 10.4056/sigs.3567059 |
| Ramasamy2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides timonensis | 2014 |
Ramasamy, Dhamodharan; Lagier, Jean-Christophe; Rossi-Tamisier, Morgane; Pfleiderer, Anne; Michelle, Caroline; Couderc, Carine; Raoult, Didier; Fournier, Pierre-Edouard |
Genome sequence and description of Bacteroides timonensis sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 1181—1197 | 10.4056/sigs.5389564 |
| Ramasamy2014a | summary, general characteristics, enzymes, metabolites, antibiotics | Enorma timonensis | 2014 |
Ramasamy, Dhamodaran; Dubourg, Gregory; Robert, Catherine; Caputo, Aurelia; Papazian, Laurent; Raoult, Didier; Fournier, Pierre-Edouard |
Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 970—986 | 10.4056/sigs.4878632 |
| Ramos1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Actinomyces graevenitzii | 1997 |
Ramos, C. P; Falsen, E.; Alvarez, N.; Akervall, E.; Sjoden, B.; Collins, M. D. |
Actinomyces graevenitzii sp. nov., Isolated from Human Clinical Specimens. | International Journal of Systematic Bacteriology | 47(3), page(s): 46—53 | 10.1099/00207713-47-3-885 |
| Ramos1997a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Arcanobacterium phocae, Arcanobacterium bernardiae, Arcanobacterium pyogenes | 1997 |
Ramos, C. P; Foster, G.; Collins, M. D. |
Phylogenetic Analysis of the Genus Actinomyces Based on 16S rRNA Gene Sequences: Description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. | International Journal of Systematic Bacteriology | 47(1), page(s): 885—888 | 10.1099/00207713-47-1-46 |
| Rattes2016 | antibiotics, wound infections | Trueperella bernardiae | 2016 |
Rattes, Alysson L. R.; Araujo, Maria Rita; Federico, Marilia P.; Magnoni, Carlos D.; Neto, Pedro Aurelio M.; Furtado, Guilherme H. |
Trueperella bernardiae : first report of wound infection post laparoscopic surgery. | Clinical Case Reports | 4(8), page(s): 812—815 | 10.1002/ccr3.600 |
| Rautio2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Alistipes putredinis, Alistipes finegoldii | 2003 |
Rautio, Merja; Eerola, Erkki; Väisänen-Tunkelrott, Marja-Liisa; Molitoris, Denise; Lawson, Paul; Collins, Matthew D.; Jousimies-Somer, Hannele |
Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a New Genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and Description of Alistipes finegoldii sp. nov., from Human Sources. | Systematic and Applied Microbiology | 26(2), page(s): 182—188 | 10.1078/072320203322346029 |
| Renaud2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Corynebacterium freneyi | 2001 |
Renaud, F. N.; Aubel, D.; Riegel, P.; Meugnier, H.; Bollet, C. |
Corynebacterium freneyi sp. nov., alpha-glucosidase-positive strains related to Corynebacterium xerosis. | International Journal of Systematic and Evolutionary Microbiology | 51(5), page(s): 1723—1728 | 10.1099/00207713-51-5-1723 |
| Renaud2007 | Corynebacterium hansenii | 2007 |
Renaud, François N. R.; Coustumier, Alain Le; Wilhem, Nathalie; Aubel, Dominique; Riegel, Philippe; Bollet, Claude; Freney, Jean |
Corynebacterium hansenii sp. nov., an alpha-glucosidase-negative bacterium related to Corynebacterium xerosis. | International Journal of Systematic and Evolutionary Microbiology | 57(5), page(s): 1113—1116 | 10.1099/ijs.0.64665-0 | |
| Reuter1983 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Lactobacillus alimentarius, Lactobacillus farciminis | 1983 |
Reuter, G. |
Lactobacillus alimentarius sp. nov., nom rev. and Lactobacillus farciminis sp. nov., nom. rev. | Systematic and Applied Microbiology | 4(2), page(s): 277—279 | 10.1016/s0723-2020(83)80055-1 |
| Reva1995 | antibiotic, antimicrobial | Bacillus cereus, Bacillus lichenifomis, Bacillus megaterium, Bacillus polymyxa, Bacillus pumilus, Bacillus subtilis, Bacillus subtilis subsp. niger, paenibacillus macerans, Paenibacillus alvei, Bacillus badius DSM 23T, Bacillus badius DSM 5610, Bacillus circulans, Bacillus laterosporus, Bacillus pasteurii, Bacillus pulvifaciens, Bacillus mycoides, Bacillus sphaericus, Bacillus stearothermophilus, Bacillus thuringiensis, Bacillus thuringiensis subsp. sotto | 1995 |
Reva, O. N.; Vyunitskaya, V. A.; Reznik, S. R.; Kozachko, I. A.; Smirnov, V. V. |
Antibiotic Susceptibility as a Taxonomic Characteristic of the Genus Bacillus. | International Journal of Systematic Bacteriology | 45(2), page(s): 409—411 | 10.1099/00207713-45-2-409 |
| Reva2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus endophyticus | 2002 |
Reva, Oleg N.; Smirnov, Valerie V.; Pettersson, Bertil; Priest, Fergus G. |
Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.). | International Journal of Systematic and Evolutionary Microbiology | 52(1), page(s): 101—107 | 10.1099/00207713-52-1-101 |
| Ribeiro2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Citrobacter europaeus | 2017 |
Ribeiro, Teresa G.; Clermont, Dominique; Branquinho, Raquel; Machado, Elisabete; Peixe, Luísa; Brisse, Sylvain |
Citrobacter europaeus sp. nov., isolated from water and human faecal samples. | International Journal of Systematic and Evolutionary Microbiology | 67(1), page(s): 170—173 | 10.1099/ijsem.0.001606 |
| Ricaboni2016 | summary, general characteristics, acid from carbohydrates | Romboutsia timonensis | 2016 |
Ricaboni, D.; Mailhe, M.; Khelaifia, S.; Raoult, D.; Million, M. |
Romboutsia timonensis, a new species isolated from human gut. | New Microbes and New Infections | 12, page(s): 6—7 | 10.1016/j.nmni.2016.04.001 |
| Riegel1993 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Corynebacterium afermentans subsp. afermentans, Corynebacterium afermentans subsp. lipophilum | 1993 |
Riegel, P.; Briel, D. De; Prévost, G.; Jehl, F.; Monteil, H.; Minck, R. |
Taxonomic Study of Corynebacterium Group ANF-1 Strains: Proposal of Corynebacterium afermentans sp. nov. Containing the Subspecies C. afermentans subsp. afermentans subsp. nov. and C. afermentans subsp. lipophilum subsp. nov. | International Journal of Systematic Bacteriology | 43(2), page(s): 287—292 | 10.1099/00207713-43-2-287 |
| Riegel1993a | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Corynebacterium propinquum | 1993 |
Riegel, P.; Briel, D.; Prévost, G.; Jehl, F.; Monteil, H. |
Proposal of Corynebacterium propinquum sp. nov. for Corynebacterium group ANF-3 strains. | FEMS Microbiology Letters | 113(2), page(s): 229—234 | 10.1111/j.1574-6968.1993.tb06519.x |
| Riegel1995 | male genital tract | Corynebacterium seminale | 1995 |
Riegel, P.; Ruimy, R.; de Briel, D.; Prévost, G.; Jehl, F.; Bimet, F.; Christen, R.; Monteil, H. |
Corynebacterium seminale sp. nov., a new species associated with genital infections in male patients. | Journal of Clinical Microbiology | 33(9), page(s): 2244—2249 | 10.1128/jcm.33.9.2244-2249.1995 |
| Riegel1995a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, diphtheria | Corynebacterium diphtheriae, Corynebacterium ulcerans | 1995 |
Riegel, P.; Ruimy, R.; Briel, D.; Prévost, G.; Jehl, F.; Christen, R.; Monteil, H. |
Taxonomy of Corynebacterium diphtheriae and related taxa, with recognition of Corynebacterium ulcerans sp. nov. nom. rev. | FEMS Microbiology Letters | 126(3), page(s): 271—276 | 10.1111/j.1574-6968.1995.tb07429.x |
| Riegel1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Corynebacterium durum | 1997 |
Riegel, P.; Heller, R.; Prévost, G.; Jehl, F.; Monteil, H. |
Corynebacterium durum sp. nov., from Human Clinical Specimens. | International Journal of Systematic Bacteriology | 47(4), page(s): 1107—1111 | 10.1099/00207713-47-4-1107 |
| RieuLesme1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ruminococcus schinkii | 1996 |
Rieu-Lesme, F. |
A new H2/CO2-using acetogenic bacterium from the rumen: Description of Ruminococcus schinkii sp. nov. | FEMS Microbiology Letters | 140(2-3), page(s): 281—286 | 10.1016/0378-1097(96)00195-4 |
| Riou1987 | summary, general characteristics, acid from carbohydrates, antibiotics | Neisseria polysaccharea | 1987 |
Riou, J.-Y.; Guibourdenche, M. |
Neisseria polysaccharea sp. nov. | International Journal of Systematic Bacteriology | 37(2), page(s): 163—165 | 10.1099/00207713-37-2-163 |
| Rivas2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus rhizosphaerae | 2005 |
Rivas, R.; Gutiérrez, Carmen; Abril, Adriana; Mateos, Pedro F.; Martínez-Molina, Eustoquio; Ventosa, Antonio; Velázquez, Encarna |
Paenibacillus rhizosphaerae sp. nov., isolated from the rhizosphere of Cicer arietinum. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1305—1309 | 10.1099/ijs.0.63513-0 |
| RiveraChavez2015 | health, salmonella | Salmonella sp. | 2015 |
Rivera-Chávez, Fabian; Bäumler, Andreas J. |
The Pyromaniac Inside You: Salmonella Metabolism in the Host Gut. | Annual Review of Microbiology | 69(1), page(s): 31—48 | 10.1146/annurev-micro-091014-104108 |
| Robert2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides cellulosilyticus | 2007 |
Robert, Céline; Chassard, Christophe; Lawson, Paul A.; Bernalier-Donadille, Annick |
Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community. | International Journal of Systematic and Evolutionary Microbiology | 57(7), page(s): 1516—1520 | 10.1099/ijs.0.64998-0 |
| Roberts1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus mojavensis | 1994 |
Roberts, M. S.; Nakamura, L. K.; Cohan, F. M. |
Bacillus mojavensis sp. nov., Distinguishable from Bacillus subtilis by Sexual Isolation, Divergence in DNA Sequence, and Differences in Fatty Acid Composition. | International Journal of Systematic Bacteriology | 44(2), page(s): 256—264 | 10.1099/00207713-44-2-256 |
| Roberts1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus vallismortis | 1996 |
Roberts, M. S.; Nakamura, L. K.; Cohan, F. M. |
Bacillus vallismortis sp. nov., a Close Relative of Bacillus subtilis, Isolated from Soil in Death Valley, California. | International Journal of Systematic Bacteriology | 46(2), page(s): 470—475 | 10.1099/00207713-46-2-470 |
| Robertson2002 | summary | Ureaplasma parvum | 2002 |
Robertson, Janet A.; Stemke, Gerald W.; Davis, John W.; Harasawa, R.; Thirkell, David; Kong, Fanrong; Shepard, Maurice C.; Ford, Denys K. |
Proposal of Ureaplasma parvum sp. nov. and emended description of Ureaplasma urealyticum (Shepard et al. 1974) Robertson et al. 2001. | International Journal of Systematic and Evolutionary Microbiology | 52(2), page(s): 587—597 | 10.1099/00207713-52-2-587 |
| Rocourt1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Listeria welshimeri, Listeria seeligeri | 1983 |
Rocourt, J.; Grimont, P. A. D. |
Notes: Listeria welshimeri sp. nov. and Listeria seeligeri sp. nov. | International Journal of Systematic Bacteriology | 33(4), page(s): 866—869 | 10.1099/00207713-33-4-866 |
| Rocourt1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Listeria grayi | 1992 |
Rocourt, J.; Boerlin, P.; Grimont, F.; Jacquet, C.; Piffaretti, J.-C. |
Assignment of Listeria grayi and Listeria murrayi to a Single Species, Listeria grayi, with a Revised Description of Listeria grayi. | International Journal of Systematic Bacteriology | 42(1), page(s): 171—174 | 10.1099/00207713-42-1-171 |
| Rodriguez2020 | soft tissue infections | Clostridium perfringenosum | 2020 |
Rodríguez, César; Kiu, Raymond; Quesada-Gómez, Carlos; Sandí, Cindy; Hall, Lindsay J. |
Clostridium perfringenosum sp. nov., a closely related species to Clostridium perfringens and its virulence factors, isolated from a human soft tissue infection. | bioRxiv | page(s): 406348 | 10.1101/2020.12.01.406348 |
| Rogosa1953 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Lactobacillus Salivarius, Lactobacillus Cellobiosus, Lactobacillus fermentum | 1953 |
Rogosa, Morrison; Wiseman, R. F.; Mitchell, Joyce A.; Disraely, M. N.; Beaman, A. J. |
Species Differentiation of Oral Lactobacilli from Man Including Descriptions of Lactobacillus Salivarius nov spec and Lactobacillus Cellobiosus nov spec. | Journal of bacteriology | 65(6), page(s): 681—699 | 10.1128/jb.65.6.681-699.1953 |
| Rogosa1964 | summary, general characteristics, educational | Veillonella genus, Veillonella parvula | 1964 |
Rogosa, M.; Bishop, Ferial S. |
The Genus Veillonella II. | Journal of bacteriology | 87(3), page(s): 162—170 | 10.1128/jb.87.1.162-170.1964 |
| Rogosa1964b | summary, general characteristics, educational | Veillonella genus, Veillonella parvula | 1964 |
Rogosa, M. |
The Genus Veillonella I. General Cultural, Ecological, and Biochemical Considerations. | Journal of bacteriology | 87, page(s): 574—580 | 10.1128/jb.87.3.574-580.1964 |
| Rogosa1964a | summary, general characteristics, educational | Veillonella genus, Veillonella parvula | 1964 |
Rogosa, Morrison; Bishop, Ferial S. |
The Genus Veillonella III. | Journal of bacteriology | 88(1), page(s): 37—41 | 10.1128/jb.88.1.37-41.1964 |
| Rogosa1965 | summary, general characteristics, educational | Veillonella genus | 1965 |
Rogosa, M.; Krichevsky, M. I.; Bishop, F. S. |
Truncated Glycolytic System in Veillonella. | Journal of bacteriology | 90(1), page(s): 164—171 | 10.1128/jb.90.1.164-171.1965 |
| Rogosa1965a | summary, general characteristics, educational | Veillonella genus, Veillonella atypica, Veillonella parvula, Veillonella dispar, Veillonella ratti | 1965 |
Rogosa, M. |
The Genus Veillonella IV. Serological Groupings, and Genus and Species Emendations. | Journal of bacteriology | 90(3), page(s): 704—709 | 10.1128/jb.90.3.704-709.1965 |
| Rogosa1969 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Acidaminococcus fermentans | 1969 |
Rogosa, Morrison |
Acidaminococcus gen. n., Acidaminococcus fermentans sp. n., Anaerobic Gram-negative Diplococci Using Amino Acids as the Sole Energy Source for Growth. | Journal of bacteriology | 98(2), page(s): 756—766 | 10.1128/jb.98.2.756-766.1969 |
| Rogosa1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Megasphaera elsdenii | 1971 |
Rogosa, M. |
Transfer of Peptostreptococcus elsdenii Gutierrez et al. to a New Genus, Megasphaera [M. elsdenii (Gutierrez et al.) comb. nov.]. | International Journal of Systematic Bacteriology | 21(2), page(s): 187—189 | 10.1099/00207713-21-2-187 |
| Rolo2013 | antibiotics | Streptococcus pseudopneumoniae | 2013 |
Rolo, Dora; Simoes, Alexandra S.; Domenech, Arnau; Fenoll, Asunción; Linares, Josefina; de Lencastre, Hermínia; Ardanuy, Carmen; Sá-Leao, Raquel |
Disease Isolates of Streptococcus pseudopneumoniae and Non-Typeable S. pneumoniae Presumptively Identified as Atypical S. pneumoniae in Spain. | PLoS ONE | 8(2), page(s): e57047 | 10.1371/journal.pone.0057047 |
| Romanenko2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Psychrobacter maritimus, Psychrobacter arenosus | 2004 |
Romanenko, Lyudmila A.; Lysenko, Anatoly M.; Rohde, Manfred; Mikhailov, Valery V.; Stackebrandt, Erko |
Psychrobacter maritimus sp. nov. and Psychrobacter arenosus sp. nov., isolated from coastal sea ice and sediments of the Sea of Japan. | International Journal of Systematic and Evolutionary Microbiology | 54(5), page(s): 1741—1745 | 10.1099/ijs.0.63096-0 |
| Romano2003 | summary, general characteristics, enzymes, antibiotics, utilisation | Planococcus rifietoensis | 2003 |
Romano, Ida; Giordano, Assunta; Lama, Licia; Nicolaus, Barbara; Gambacorta, Agata |
Planococcus rifietensis sp. nov, Isolated from Algal Mat Collected from a Sulfurous Spring in Campania (Italy). | Systematic and Applied Microbiology | 26(3), page(s): 357—366 | 10.1078/072320203322497383 |
| Romano2005 | Alkalibacillus filiformis | 2005 |
Romano, Ida; Lama, Licia; Nicolaus, Barbara; Gambacorta, Agata; Giordano, Assunta |
Alkalibacillus filiformis sp. nov., isolated from a mineral pool in Campania, Italy. | International Journal of Systematic and Evolutionary Microbiology | 55(6), page(s): 2395—2399 | 10.1099/ijs.0.63864-0 | |
| Roos2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus mucosae | 2000 |
Roos, S.; Karner, F.; Axelsson, L.; Jonsson, H. |
Lactobacillus mucosae sp. nov., a new species with in vitro mucus-binding activity isolated from pig intestine. | International Journal of Systematic and Evolutionary Microbiology | 50(1), page(s): 251—258 | 10.1099/00207713-50-1-251 |
| Roos2005 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus gastricus, Lactobacillus antri, Lactobacillus kalixensis, Lactobacillus ultunensis | 2005 |
Roos, Stefan; Engstrand, Lars; Jonsson, Hans |
Lactobacillus gastricus sp. nov., Lactobacillus antri sp. nov., Lactobacillus kalixensis sp. nov. and Lactobacillus ultunensis sp. nov., isolated from human stomach mucosa. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 77—82 | 10.1099/ijs.0.63083-0 |
| Rosenblueth2004 | summary, general characteristics, metabolites, utilisation, antibiotics, clinical sources | Klebsiella variicola | 2004 |
Rosenblueth, Mónica; Martínez, Lucía; Silva, Jesus; Martínez-Romero, Esperanza |
Klebsiella variicola, A Novel Species with Clinical and Plant-Associated Isolates. | Systematic and Applied Microbiology | 27(1), page(s): 27—35 | 10.1078/0723-2020-00261 |
| Rosero2016 | summary, general characteristics, acid from carbohydrates, metabolites | Agathobacter rectalis, Agathobacter ruminis | 2016 |
Rosero JA, Killer J, Sechovcová H, Mrázek J, Benada O, Fliegerová K, Havlík J, Kope?ný J. |
Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows. | International Journal of Systematic and Evolutionary Microbiology | 66(2), page(s): 768—773 | 10.1099/ijsem.0.000788 |
| Roux2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, blood infection | Paenibacillus massiliensis, Paenibacillus sanguinis, Paenibacillus timonensis | 2004 |
Roux, Véronique; Raoult, Didier |
Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1049—1054 | 10.1099/ijs.0.02954-0 |
| Roux2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, urinary tract infection | Paenibacillus provencensis, Paenibacillus urinalis | 2008 |
Roux, V.; Fenner, L.; Raoult, D. |
Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine. | International Journal of Systematic and Evolutionary Microbiology | 58(3), page(s): 682—687 | 10.1099/ijs.0.65228-0 |
| Roux2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brevibacterium massiliense | 2009 |
Roux, V.; Raoult, D. |
Brevibacterium massiliense sp. nov., isolated from a human ankle discharge. | International Journal of Systematic and Evolutionary Microbiology | 59(8), page(s): 1960—1964 | 10.1099/ijs.0.007864-0 |
| Roux2012 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Kurthia massiliensis | 2012 |
Roux, Véronique; karkouri , Khalid El; Lagier, Jean-Christophe; Robert, Catherine; Raoult, Didier |
Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov. | Standards in Genomic Sciences | 7(2), page(s): 221—232 | 10.4056/sigs.3206554 |
| Roux2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Oceanobacillus massiliensis | 2013 |
Roux, Véronique; Million, Matthieu; Robert, Catherine; Magne, Alix; Raoult, Didier |
Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov. | Standards in Genomic Sciences | 9(2), page(s): 370—384 | 10.4056/sigs.4267953 |
| Roux2014 | summary, general characteristics, enzymes, antibiotics, utilisation | Kurthia senegalensis | 2014 |
Roux, Véronique; Lagier, Jean-Christophe; Gorlas, Aurore; Robert, Catherine; Raoult, Didier |
Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov. | Standards in Genomic Sciences | 9(3), page(s): 1321—1332 | 10.4056/sigs.5078947 |
| Roy2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Butyricimonas faecalis | 2019 |
Roy, Tiphaine Le; der Smissen, Patrick Van; Paquot, Adrien; Delzenne, Nathalie; Muccioli, Giulio G.; Collet, Jean-François; Cani, Patrice D. |
Butyricimonas faecalis sp. nov., isolated from human faeces and emended description of the genus Butyricimonas. | International Journal of Systematic and Evolutionary Microbiology | 69(3), page(s): 833—838 | 10.1099/ijsem.0.003249 |
| LeRoy2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Dysosmobacter welbionis, Oscillibacter ruminantium, Oscillibacter valericigenes | 2020 |
Roy, Tiphaine Le; der Smissen, Patrick Van; Paquot, Adrien; Delzenne, Nathalie; Muccioli, Giulio G.; Collet, Jean-François; Cani, Patrice D. |
Dysosmobacter welbionis gen. nov., sp. nov., isolated from human faeces and emended description of the genus Oscillibacter. | International Journal of Systematic and Evolutionary Microbiology | 70(9), page(s): 4851—4858 | 10.1099/ijsem.0.003547 |
| RuizGarcia2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus axarquiensis, Bacillus malacitensis | 2005 |
Ruiz-García, Cristina; Quesada, Emilia; Martínez-Checa, Fernando; Llamas, Inmaculada; Urdaci, Maria C.; Béjar, Victoria |
Bacillus axarquiensis sp. nov. and Bacillus malacitensis sp. nov., isolated from river-mouth sediments in southern Spain. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1279—1285 | 10.1099/ijs.0.63567-0 |
| RuizGarcia2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus velezensis, Bacillus velezensis Variant polyfermenticus | 2005 |
Ruiz-García, Cristina; Béjar, Victoria; Martínez-Checa, Fernando; Llamas, Inmaculada; Quesada, Emilia |
Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Vélez in Málaga, southern Spain. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 191—195 | 10.1099/ijs.0.63310-0 |
| Saha2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudomonas oleovorans subsp. lubricantis, Pseudomonas pseudoalcaligenes, Pseudomonas oleovorans | 2010 |
Saha, Ratul; Spröer, Cathrin; Beck, Brian; Bagley, Susan |
Pseudomonas oleovorans subsp. lubricantis subsp. nov., and Reclassification of Pseudomonas pseudoalcaligenes ATCC 17440T as Later Synonym of Pseudomonas oleovorans ATCC 8062T. | Current Microbiology | 60(4), page(s): 294—300 | 10.1007/s00284-009-9540-6 |
| Saha2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Klebsiella michiganensis | 2012 |
Saha, Ratul; Farrance, Christine E.; Verghese, Bindhu; Hong, Sunhee; Donofrio, Robert S. |
Klebsiella michiganensis sp. nov., A New Bacterium Isolated from a Tooth Brush Holder. | Current Microbiology | 66(1), page(s): 72—78 | 10.1007/s00284-012-0245-x |
| Sakamoto2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Prevotella shahii, Prevotella salivae | 2004 |
Sakamoto, Mitsuo; Suzuki, Masahito; Huang, Yi; Umeda, Makoto; Ishikawa, Isao; Benno, Yoshimi |
Prevotella shahii sp. nov. and Prevotella salivae sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 877—883 | 10.1099/ijs.0.02876-0 |
| Sakamoto2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Parabacteroides distasonis, Parabacteroides goldsteinii, Parabacteroides merdae | 2006 |
Sakamoto, Mitsuo; Benno, Yoshimi |
Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1599—1605 | 10.1099/ijs.0.64192-0 |
| Sakamoto2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Barnesiella viscericola, Barnesiella viscericola-like bacteria | 2007 |
Sakamoto, Mitsuo; Lan, Pham Thi Ngoc; Benno, Yoshimi |
Barnesiella viscericola gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from chicken caecum. | International Journal of Systematic and Evolutionary Microbiology | 57(2), page(s): 342—346 | 10.1099/ijs.0.64709-0 |
| Sakamoto2007a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Parabacteroides johnsonii | 2007 |
Sakamoto, Mitsuo; Kitahara, Maki; Benno, Yoshimi |
Parabacteroides johnsonii sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 57(2), page(s): 293—296 | 10.1099/ijs.0.64588-0 |
| Sakamoto2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Butyricimonas synergistica, Butyricimonas virosa | 2009 |
Sakamoto, M.; Takagaki, A.; Matsumoto, K.; Kato, Y.; Goto, K.; Benno, Y. |
Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family 'Porphyromonadaceae' isolated from rat faeces. | International Journal of Systematic and Evolutionary Microbiology | 59(7), page(s): 1748—1753 | 10.1099/ijs.0.007674-0 |
| Sakamoto2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, blood infection | Parabacteroides gordonii | 2009 |
Sakamoto, M.; Suzuki, N.; Matsunaga, N.; Koshihara, K.; Seki, M.; Komiya, H.; Benno, Y. |
Parabacteroides gordonii sp. nov., isolated from human blood cultures. | International Journal of Systematic and Evolutionary Microbiology | 59(11), page(s): 2843—2847 | 10.1099/ijs.0.010611-0 |
| Sakamoto2010 | oral cavity | Prevotella aurantiaca | 2010 |
Sakamoto, Mitsuo; Suzuki, Natsuko; Okamoto, Masaaki |
Prevotella aurantiaca sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 60(3), page(s): 500—503 | 10.1099/ijs.0.012831-0 |
| Sakamoto2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Butyricimonas faecihominis, Butyricimonas paravirosa | 2014 |
Sakamoto, Mitsuo; Tanaka, Yoshiki; Benno, Yoshimi; Ohkuma, Moriya |
Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 9), page(s): 2992—2997 | 10.1099/ijs.0.065318-0 |
| Sakamoto2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Parabacteroides faecis | 2015 |
Sakamoto, Mitsuo; Tanaka, Yoshiki; Benno, Yoshimi; Ohkuma, Moriya |
Parabacteroides faecis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/4), page(s): 1342—1346 | 10.1099/ijs.0.000109 |
| Sakamoto2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Faecalimonas umbilicata, Faecalicatena contorta, Faecalicatena fissicatena, Faecalicatena orotica | 2017 |
Sakamoto, Mitsuo; Iino, Takao; Ohkuma, Moriya |
Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1219—1227 | 10.1099/ijsem.0.001790 |
| Sakamoto2018 | butyrate | Lawsonibacter asaccharolyticus | 2018 |
Sakamoto, Mitsuo; Ikeyama, Nao; Yuki, Masahiro; Ohkuma, Moriya |
Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166 T , a Butyrate-Producing Bacterium, Isolated from Human Feces. | Genome Announcements | 6(25), | 10.1128/genomea.00563-18 |
| Sakamoto2018a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, butyrate | Lawsonibacter asaccharolyticus | 2018 |
Sakamoto, Mitsuo; Iino, Takao; Yuki, Masahiro; Ohkuma, Moriya |
Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(6), page(s): 2074—2081 | 10.1099/ijsem.0.002800 |
| Sakamoto2018b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Mesosutterella multiformis, Sutterella megalosphaeroides | 2018 |
Sakamoto, Mitsuo; Ikeyama, Nao; Kunihiro, Tadao; Iino, Takao; Yuki, Masahiro; Ohkuma, Moriya |
Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(12), page(s): 3942—3950 | 10.1099/ijsem.0.003096 |
| Sakamoto2018c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Parolsenella catena | 2018 |
Sakamoto, Mitsuo; Iino, Takao; Hamada, Moriyuki; Ohkuma, Moriya |
Parolsenella catena gen. nov., sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(4), page(s): 1165—1172 | 10.1099/ijsem.0.002645 |
| Sakamoto2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Parolsenella catena, Parolsenella massiliensis | 2019 |
Sakamoto, Mitsuo; Ikeyama, Nao; Murakami, Takumi; Mori, Hiroshi; Yuki, Masahiro; Ohkuma, Moriya |
Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 69(4), page(s): 1123—1129 | 10.1099/ijsem.0.003283 |
| Sakamoto2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Alistipes communis, Alistipes dispar, Alistipes onderdonkii subsp. vulgaris, Alistipes onderdonkii subsp. onderdonkii | 2020 |
Sakamoto, Mitsuo; Ikeyama, Nao; Ogata, Yusuke; Suda, Wataru; Iino, Takao; Hattori, Masahira; Ohkuma, Moriya |
Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 70(1), page(s): 473—480 | 10.1099/ijsem.0.003778 |
| Sakamoto2020a | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Dialister hominis, Phascolarctobacterium faecium | 2020 |
Sakamoto, Mitsuo; Ikeyama, Nao; Toyoda, Atsushi; Murakami, Takumi; Mori, Hiroshi; Iino, Takao; Ohkuma, Moriya |
Dialister hominis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 70(1), page(s): 589—595 | 10.1099/ijsem.0.003797 |
| Sakata2002 | acid from carbohydrates | Bifidobacterium longum, Bifidobacterium suis, Bifidobacterium infantis | 2002 |
Sakata, S. |
Unification of Bifidobacterium infantis and Bifidobacterium suis as Bifidobacterium longum. | International Journal of Systematic and Evolutionary Microbiology | 52(6), page(s): 1945—1951 | 10.1099/ijs.0.02221-0 |
| Sakazaki1968 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Vibrio Alginolyticus, Vibrio Parahaemolyticus | 1968 |
Sakazaki, R. I. Ichi |
Proposal of Vibrio Alginolyticus for the Biotype 2 of Vibrio Parahaemolyticus. | Japanese Journal of Medical Science and Biology | 21(5), page(s): 359—362 | 10.7883/yoken1952.21.359 |
| Sakazaki1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Klebsiella ornithinolytica | 1989 |
Sakazaki, R.; Tamura, K.; Kosako, Y.; Yoshizaki, E. |
Klebsiella ornithinolytica sp. nov., formerly known as ornithine-positiveKlebsiella oxytoca. | Current Microbiology | 18(4), page(s): 201—206 | 10.1007/bf01570291 |
| Sakon2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sutterella parvirubra, Megamonas funiformis | 2008 |
Sakon, H.; Nagai, F.; Morotomi, M.; Tanaka, R. |
Sutterella parvirubra sp. nov. and Megamonas funiformis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 58(4), page(s): 970—975 | 10.1099/ijs.0.65456-0 |
| Sakuma2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium glycyrrhizinilyticum | 2006 |
Sakuma, Keita; Kitahara, Maki; Kibe, Ryoko; Sakamoto, Mitsuo; Benno, Yoshimi |
Clostridium glycyrrhizinilyticum sp. nov., a Glycyrrhizin-Hydrolysing Bacterium Isolated from Human Faeces. | Microbiology and Immunology | 50(7), page(s): 481—485 | 10.1111/j.1348-0421.2006.tb03818.x |
| Salvetti2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Eggerthia catenaformis, Kandleria vitulina | 2011 |
Salvetti, Elisa; Felis, Giovanna E.; Dellaglio, Franco; Castioni, Anna; Torriani, Sandra; Lawson, Paul A. |
Reclassification of Lactobacillus catenaformis (Eggerth 1935) Moore and Holdeman 1970 and Lactobacillus vitulinus Sharpe et al. 1973 as Eggerthia catenaformis gen. nov., comb. nov. and Kandleria vitulina gen. nov., comb. nov., respectively. | International Journal of Systematic and Evolutionary Microbiology | 61(10), page(s): 2520—2524 | 10.1099/ijs.0.029231-0 |
| Sanchez2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus barcinonensis | 2005 |
Sánchez, Marta M.; Fritze, Dagmar; Blanco, Ana; Spröer, Cathrin; Tindall, Brian J.; Schumann, Peter; Kroppenstedt, Reiner M.; Diaz, Pilar; Pastor, F. I. Javier |
Paenibacillus barcinonensis sp. nov., a xylanase-producing bacterium isolated from a rice field in the Ebro River delta. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 935—939 | 10.1099/ijs.0.63383-0 |
| Sandstedt1991 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter upsaliensis | 1991 |
Sandstedt, Karin; Ursing, Jan |
Description of Campylobacter upsaliensis sp. nov. Previously Known as the CNW Group. | Systematic and Applied Microbiology | 14(1), page(s): 39—45 | 10.1016/s0723-2020(11)80359-0 |
| Sangavai2020 | catabolism, biotechnology, enzymes | Acetoanaerobium sticklandii | 2020 |
Sangavai, Chinnadurai; Chellapandi, Paulchamy |
Growth-associated catabolic potential of Acetoanaerobium sticklandii DSM 519 on gelatin and amino acids. | Journal of Basic Microbiology | 60(10), page(s): 882—893 | 10.1002/jobm.202000292 |
| Sangavai2020a | genetics | Acetoanaerobium sticklandii | 2020 |
Sangavai, C.; Prathiviraj, R.; Chellapandi, P. |
Functional prediction, characterization, and categorization of operome from Acetoanaerobium sticklandii DSM 519. | Anaerobe | 61, page(s): 102088 | 10.1016/j.anaerobe.2019.102088 |
| Sankar2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium polynesiense | 2015 |
Sankar, Senthil Alias; Rathored, Jaishriram; Metidji, Sarah; Lagier, Jean-Christophe; Khelaifia, Saber; Labas, Noemie; Musso, Didier; Raoult, Didier; Fournier, Pierre-Edouard |
Clostridium polynesiense sp. nov., a new member of the human gut microbiota in French Polynesia. | Anaerobe | 36, page(s): 79—87 | 10.1016/j.anaerobe.2015.10.004 |
| Sarvari2019 | antibiotic, antimicrobial, clinical sources | Clostridium perfringens | 2019 |
Sárvári, Károly Péter; Schoblocher, Dzsenifer |
The antibiotic susceptibility pattern of gas gangrene-forming Clostridium spp. clinical isolates from South-Eastern Hungary. | Infectious Diseases | 52(3), page(s): 196—201 | 10.1080/23744235.2019.1696472 |
| Sawada1993 | summary, general characteristics | Agrobacterium radiobacter, Agrobacterium rhizogenes | 1993 |
Sawada, H.; H., Ieki.; Oyaizu, H.; Matsumoto, S. |
Proposal for Rejection of Agrobacterium tumefaciens and Revised Descriptions for the Genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes. | International Journal of Systematic Bacteriology | 43(4), page(s): 694—702 | 10.1099/00207713-43-4-694 |
| Scardovi1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium angulatum | 1974 |
Scardovi, V.; Crociani, F. |
Bifidobacterium catenulatum, Bifidobacterium dentium, and Bifidobacterium angulatum: Three New Species and Their Deoxyribonucleic Acid Homology Relationships. | International Journal of Systematic Bacteriology | 24(1), page(s): 6—20 | 10.1099/00207713-24-1-6 |
| Scardovi1974a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium animalis | 1974 |
Scardovi, V.; Trovatelli, L. D. |
Bifidobacterium animalis (Mitsuoka) comb. nov. and the "minimum" and "subtile" Groups of New Bifidobacteria Found in Sewage. | International Journal of Systematic Bacteriology | 24(1), page(s): 21—28 | 10.1099/00207713-24-1-21 |
| Scardovi1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium cuniculi, Bifidobacterium choerinum, Bifidobacterium boum, Bifidobacterium pseudocatenulatum | 1979 |
Scardovi, V.; Trovatelli, L. D.; Biavati, B.; G., Zani |
Bifidobacterium cuniculi, Bifidobacterium choerinum, Bifidobacterium boum, and Bifidobacterium pseudocatenulatum: Four New Species and Their Deoxyribonucleic Acid Homology Relationships. | International Journal of Systematic Bacteriology | 29(4), page(s): 291—311 | 10.1099/00207713-29-4-291 |
| Scheldeman2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus farraginis, Bacillus fortis, Bacillus fordii | 2004 |
Scheldeman, Patsy; Rodríguez-Díaz, Marina; Goris, Johan; Pil, Annelies; Clerck, Elke De; Herman, Lieve; Vos, Paul De; Logan, Niall A.; Heyndrickx, Marc |
Bacillus farraginis sp. nov., Bacillus fortis sp. nov. and Bacillus fordii sp. nov., isolated at dairy farms. | International Journal of Systematic and Evolutionary Microbiology | 54(4), page(s): 1355—1364 | 10.1099/ijs.0.63095-0 |
| Scheldeman2004a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, dairy food contamination | Paenibacillus lactis | 2004 |
Scheldeman, Patsy; Goossens, Karen; Rodriguez-Diaz, Marina; Pil, Annelies; Goris, Johan; Herman, Lieve; Vos, Paul De; Logan, Niall A.; Heyndrickx, Marc |
Paenibacillus lactis sp. nov., isolated from raw and heat-treated milk. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 885—891 | 10.1099/ijs.0.02822-0 |
| Scherago1937 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Pseudomonas caviae | 1937 |
Scherago, M. |
An Epizootic Septicemia of Young Guinea Pigs Caused by Pseudomonas Caviae, n. sp. | Journal of Infectious Diseases | 60(2), page(s): 245—250 | 10.1093/infdis/60.2.245 |
| Scheuner2014 | summary, general characteristics, utilisation | Rubinisphaera brasiliensis | 2014 |
Scheuner, Carmen; Tindall, Brian J.; Lu, Megan; Nolan, Matt; Lapidus, Alla; Cheng, Jan-Fang; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Ivanova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Jeffries, Cynthia D.; Hauser, Loren; Land, Miriam; Mwirichia, Romano; Rohde, Manfred; Abt, Birte; Detter, John C.; Woyke, Tanja; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Göker, Markus; Kyrpides, Nikos C.; Klenk, Hans-Peter |
Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. | Standards in Genomic Sciences | 9(1), | 10.1186/1944-3277-9-10 |
| Schippers2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium oleivorans, Microbacterium hydrocarbonoxydans | 2005 |
Schippers, Axel; Bosecker, Klaus; Spröer, Cathrin; Schumann, Peter |
Microbacterium oleivorans sp. nov. and Microbacterium hydrocarbonoxydans sp. nov., novel crude-oil-degrading Gram-positive bacteria. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 655—660 | 10.1099/ijs.0.63305-0 |
| SchippersLammertse1963 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Arthrobacter polychromogenes | 1963 |
Schippers-Lammertse, Anna F.; Muijsers, A. O.; Klatser-Oedekerk, Kunnegina B. |
Arthrobacter polychromogenes nov.spec., its pigments, and a bacteriophage of this species. | Antonie van Leeuwenhoek | 29(1), page(s): 1—15 | 10.1007/bf02046033 |
| Schlegel2000 | summary, general characteristics, enzymes, acid from carbohydrates, food source | Streptococcus infantarius, Streptococcus infantarius subsp. infantarius, Streptococcus infantarius subsp. coli | 2000 |
Schlegel, L.; Grimont, F.; Collins, M. D.; Régnault, B.; Grimont, P. A.; Bouvet, A. |
Streptococcus infantarius sp. nov., Streptococcus infantarius subsp. infantarius subsp. nov. and Streptococcus infantarius subsp. coli subsp. nov., isolated from humans and food. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1425—1434 | 10.1099/00207713-50-4-1425 |
| Schlegel2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus gallolyticus subsp. Gallolyticus, Streptococcus gallolyticus subsp. macedonicus, Streptococcus gallolyticus subsp. pasteurianus, Streptococcus macedonicus | 2003 |
Schlegel, Laurent; Grimont, Francine; Ageron, Elisabeth; Grimont, Patrick A. D.; Bouvet, Anne |
Reappraisal of the taxonomy of the Streptococcus bovis/Streptococcus equinus complex and related species: description of Streptococcus gallolyticus subsp. gallolyticus subsp. nov., S. gallolyticus subsp. macedonicus subsp. nov. and S. gallolyticus subsp. pasteurianus subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 631—645 | 10.1099/ijs.0.02361-0 |
| Schleifer1975 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, skin | Staphylococcus epidermidis, Staphylococcus saprophyticus, Staphylococcus cohnii, Staphylococcus haemolyticus, Staphylococcus xylosus | 1975 |
Schleifer, K. H.; Kloos, W. E. |
Isolation and Characterization of Staphylococci from Human Skin I. Amended Descriptions of Staphylococcus epidermidis and Staphylococcus saprophyticus and Descriptions of Three New Species: Staphylococcus cohnii, Staphylococcus haemolyticus, and Staphylococcus xylosus. | International Journal of Systematic Bacteriology | 25(1), page(s): 50—61 | 10.1099/00207713-25-1-50 |
| Schleifer1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus faecalis, Enterococcus faecium | 1984 |
Schleifer, K. H.; Kilpper-Bälz, R. |
Transfer of Streptococcus faecalis and Streptococcus faecium to the Genus Enterococcus nom. rev. as Enterococcus faecalis comb. nov. and Enterococcus faecium comb. nov. | International Journal of Systematic Bacteriology | 34(1), page(s): 31—34 | 10.1099/00207713-34-1-31 |
| Schleifer1984a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus arlettae, Staphylococcus equorum, Staphylococcus kloosii | 1984 |
Schleifer, K. H.; Kilpper-Bälz, R.; Devriese, L. A. |
Staphylococcus arlettae sp. nov., S. equorum sp. nov. and S. kloosii sp. nov.: Three New Coagulase-Negative, Novobiocin-Resistant Species from Animals. | Systematic and Applied Microbiology | 5(4), page(s): 501—509 | 10.1016/s0723-2020(84)80007-7 |
| Schleifer1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactococcus lactis subsp. lactis, Lactococcus cremoris, Lactococcus garvieae, Lactococcus plantarum, Lactococcus raffinolactis | 1985 |
Schleifer, K. H.; Kraus, J.; Dvorak, C.; Kilpper-Bälz, R.; Collins, M. D.; Fischer, W. |
Transfer of Streptococcus lactis and Related Streptococci to the Genus Lactococcus gen. nov. | Systematic and Applied Microbiology | 6(2), page(s): 183—195 | 10.1016/s0723-2020(85)80052-7 |
| Schlesner1989 | summary, general characteristics, enzymes, metabolites, utilisation | Planctomyces brasiliensis | 1989 |
Schlesner, Heinz |
Planctomyces brasiliensis sp. nov., a Halotolerant Bacterium from a Salt Pit. | Systematic and Applied Microbiology | 12(2), page(s): 159—161 | 10.1016/s0723-2020(89)80008-6 |
| Scholz2016 | summary, general characteristics | Cutibacterium acnes, Cutibacterium avidum, Cutibacterium granulosum, Acidipropionibacterium jensenii, Acidipropionibacterium acidipropionici, Cutibacterium acnes subsp. defendens | 2016 |
Scholz, Christian F. P.; Kilian, Mogens |
The natural history of cutaneous propionibacteria, and reclassification of selected species within the genus Propionibacterium to the proposed novel genera Acidipropionibacterium gen. nov., Cutibacterium gen. nov. and Pseudopropionibacterium gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4422—4432 | 10.1099/ijsem.0.001367 |
| Schroettner2014 | antibiotics | Aureimonas altamirensis | 2014 |
Schröttner, Percy; Rudolph, Wolfram W.; Taube, Franziska; Gunzer, Florian |
First report on the isolation of Aureimonas altamirensis from a patient with peritonitis. | International Journal of Infectious Diseases | 29, page(s): 71—73 | 10.1016/j.ijid.2014.09.006 |
| Schroll2001 | butyrate | Alcaligenes faecalis subsp. parafaecalis | 2001 |
Schroll, Gerhard; Busse, Hans-Jürgen; Busse, Hans-Jürgen; Parrer, Günter; Rölleke, Sabine; Lubitz, Werner; Denner, Ewald B. M. |
Alcaligenes faecalis subsp. parafaecalis subsp. nov., a Bacterium Accumulating Poly-beta-hydroxybutyrate from Acetone-butanol Bioprocess Residues. | Systematic and Applied Microbiology | 24(1), page(s): 37—43 | 10.1078/0723-2020-00001 |
| Schubert1988 | summary, general characteristics, acid from carbohydrates, metabolites, antibiotics | Aeromonas punctata, Aeromonas eucrenophila, aeromonas caviae | 1988 |
Schubert, Ralph H. W.; Hegazi, Mohammed |
Aeromonas eucrenophila species nova aeromonas caviae a later and illegitimate synonym of aeromonas punctata. | Zentralblatt für Bakteriologie, Mikrobiologie und Hygiene. Series A | 268(1), page(s): 34—39 | 10.1016/s0176-6724(88)80112-3 |
| Schumann1999 | genetics, taxonomy | Kocuria rosea | 1999 |
Schumann, Peter; Spröer, Cathrin; Burghardt, Jutta; Kovacs, Gabor; Stackebrandt, Erko |
Reclassification of the species Kocuria erythromyxa (Brooks and Murray 1981) as Kocuria rosea (Flügge 1886). | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 393—396 | 10.1099/00207713-49-2-393 |
| Schumann2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Cellulosimicrobium cellulans | 2001 |
Schumann, P.; Weiss, N.; Stackebrandt, E. |
Reclassification of Cellulomonas cellulans (Stackebrandt and Keddie 1986) as Cellulosimicrobium cellulans gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(3), page(s): 1007—1010 | 10.1099/00207713-51-3-1007 |
| Schwiertz2000 | gut microbiome | Eubacterium barkeri, Eubacterium biforme, Faecalicatena contorta, Faecalitalea cylindroides, Eubacterium dolichum, Anaerostipes hadrus, Eggerthella lenta, Eubacterium limosum, Clostridium moniliforme, Eubacterium ventriosum | 2000 |
Schwiertz, Andreas; Blay, Gwenaelle Le; Blaut, Michael |
Quantification of Different Eubacterium spp. in Human Fecal Samples with Species-Specific 16S rRNA-Targeted Oligonucleotide Probes. | Applied and Environmental Microbiology | 66(1), page(s): 375—382 | 10.1128/aem.66.1.375-382.2000 |
| Schwiertz2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, butyrate | Anaerostipes caccae | 2002 |
Schwiertz, Andreas; Hold, Georgina L.; Duncan, Sylvia H.; Gruhl, Bärbel; Collins, Matthew D.; Lawson, Paul A.; Flint, Harry J.; Blaut, Michael |
Anaerostipes caccae gen. nov., sp. nov., a New Saccharolytic, Acetate-utilising, Butyrate-producing Bacterium from Human Faeces. | Systematic and Applied Microbiology | 25(1), page(s): 46—51 | 10.1078/0723-2020-00096 |
| LaScola2000 | water source | Afipia felis | 2000 |
Scola, B. La |
Isolation of new fastidious alpha-Proteobacteria and Afipia felis from hospital water supplies by direct plating and amoebal co-culture procedures. | FEMS Microbiology Ecology | 34(2), page(s): 129—137 | 10.1016/s0168-6496(00)00084-2 |
| LaScola2001 | summary, Whipple's disease | Tropheryma whipplei | 2001 |
Scola, B. La; Fenollar, F.; Fournier, P. E.; Altwegg, M.; Mallet, M. N.; Raoult, D. |
Description of Tropheryma whipplei gen. nov., sp. nov., the Whipple's disease bacillus. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1471—1479 | 10.1099/00207713-51-4-1471 |
| LaScola2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Afipia birgiae, Afipia massiliensis | 2002 |
Scola, B. La |
Description of Afipia birgiae sp. nov. and Afipia massiliensis sp. nov. and recognition of Afipia felis genospecies A. | International Journal of Systematic and Evolutionary Microbiology | 52(5), page(s): 1773—1782 | 10.1099/ijs.0.02149-0 |
| Seck2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Tessaracoccus massiliensis | 2016 |
Seck, E.; Traore, S. I.; Khelaifia, S.; Beye, M.; Michelle, C.; Couderc, C.; Brah, S.; Fournier, P.-E.; Raoult, D.; Dubourg, G. |
Tessaracoccus massiliensis sp. nov., a new bacterial species isolated from the human gut. | New Microbes and New Infections | 13, page(s): 3—12 | 10.1016/j.nmni.2016.05.002 |
| Seeliger1981 | summary, general characteristics | Listeria innocua | 1981 |
Seeliger, H. P. |
[Nonpathogenic listeriae: L. innocua sp. n. (Seeliger et Schoofs, 1977) (author's transl)]. | Zentralblatt für Bakteriologie, Mikrobiologie und Hygiene | 249, page(s): 487—493 | 6171948 PMID |
| Seeliger1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Listeria ivanovii | 1984 |
Seeliger, H. P. R.; Rocourt, J.; Schrettenbrunner, A.; Grimont, P. A. D.; Jones, D. |
Notes: Listeria ivanovii sp. nov. | International Journal of Systematic Bacteriology | 34(3), page(s): 336—337 | 10.1099/00207713-34-3-336 |
| Segers1994 | summary, general characteristics, enzymes, metabolites, utilisation | Brevundimonas diminuta, Brevundimonas vesicularis | 1994 |
Segers, P.; Vancanneyt, M.; B., P. O. T.; Torck, U.; Hoste, B.; Dewettinck, D.; Falsen, E.; Kersters, K.; P. De Vos |
Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Busing, Doll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., Respectively. | International Journal of Systematic Bacteriology | 44(3), page(s): 499—510 | 10.1099/00207713-44-3-499 |
| Sella2014 | summary, general characteristics, biotechnology | Bacillus atrophaeus | 2014 |
Sella, Sandra R. B. R.; Vandenberghe, Luciana P. S.; Soccol, Carlos Ricardo |
Bacillus atrophaeus:main characteristics and biotechnological applications - a review. | Critical Reviews in Biotechnology | 35(4), page(s): 533—545 | 10.3109/07388551.2014.922915 |
| Selma2014 | summary, general characteristics, enzymes, metabolites, utilisation | Gordonibacter urolithinfaciens | 2014 |
Selma, María V.; Tomás-Barberán, Francisco A.; Beltrán, David; García-Villalba, Rocio; Espín, Juan C. |
Gordonibacter urolithinfaciens sp. nov., a urolithin-producing bacterium isolated from the human gut. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/7), page(s): 2346—2352 | 10.1099/ijs.0.055095-0 |
| Senghor2017 | summary, general characteristics | Bacillus dakarensis, Bacillus sinesaloumensis, Gracilibacillus timonensis, Halobacillus massiliensis, Lentibacillus massiliensis, Oceanobacillus senegalensis, Oceanobacillus timonensis, Virgibacillus dakarensis, Virgibacillus marseillensis | 2017 |
Senghor, B.; Seck, E. H.; Khelaifia, S.; Bassene, H.; Sokhna, C.; Fournier, P.-E.; Raoult, D.; Lagier, J.-C. |
Description of 'Bacillus dakarensis' sp. nov., 'Bacillus sinesaloumensis' sp. nov., 'Gracilibacillus timonensis' sp. nov., 'Halobacillus massiliensis' sp. nov., 'Lentibacillus massiliensis' sp. nov., 'Oceanobacillus senegalensis' sp. nov., 'Oceanobacillus timonensis' sp. nov., 'Virgibacillus dakarensis' sp. nov. and 'Virgibacillus marseillensis' sp. nov., nine halophilic new species isolated from human stool. | New Microbes and New Infections | 17, page(s): 45—51 | 10.1016/j.nmni.2017.01.010 |
| Senghor2017a | summary, general characteristics | Gracilibacillus phocaeensis, Sediminibacillus massiliensis, Virgibacillus ndiopensis | 2017 |
Senghor, B.; Khelaifia, S.; Bassene, H.; Seck, E. H.; Fournier, P.-E.; Sokhna, C.; Raoult, D.; Lagier, J.-C. |
'Gracilibacillus phocaeensis' sp. nov., 'Sediminibacillus massiliensis' sp. nov. and 'Virgibacillus ndiopensis' sp. nov., three halophilic species isolated from salty human stools by culturomics. | New Microbes and New Infections | 20, page(s): 51—54 | 10.1016/j.nmni.2017.08.006 |
| Seo2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sellimonas intestinalis | 2016 |
Seo, Boram; Yoo, Ju Eun; Lee, Yung Mi; Ko, GwangPyo |
Sellimonas intestinalis gen. nov., sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 66(2), page(s): 951—956 | 10.1099/ijsem.0.000817 |
| Seo2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Merdimonas faecis | 2017 |
Seo, Boram; Yoo, Ju Eun; Lee, Yung Mi; Ko, GwangPyo |
Merdimonas faecis gen. nov., sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 67(7), page(s): 2430—2435 | 10.1099/ijsem.0.001977 |
| Seo2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Faecalibacillus intestinalis, Faecalibacillus faecis | 2019 |
Seo, Boram; Jeon, Kyungchan; Baek, Inwoo; Lee, Yung Mi; Baek, Kiwoon; Ko, GwangPyo |
Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 69(7), page(s): 2120—2128 | 10.1099/ijsem.0.003443 |
| Seubert1960 | summary, general characteristics, metabolites, utilisation | Pseudomonas citronellolis | 1960 |
Seubert, W. |
Degradation of isoprenoid compounds by micro-organisms. I. Isolation and characterization of an isoprenoid-degrading bacterium, Pseudomonas citronellolis n. sp. | Journal of bacteriology | 79, page(s): 426—434 | 10.1128/jb.79.3.426-434.1960 |
| Shah1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Bacteroides buccae, Bacteroides denticola, Bacteroides pentosaceus, Bacteroides buccalis | 1981 |
Shah, Haroun N.; Collins, Matthew D. |
Bacteroides buccalis, sp. nov., Bacteroides denticola, sp. nov., and Bacteroides pentosaceus, sp. nov., new species of the genus Bacteroides from the oral cavity. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene | 2(3), page(s): 235—241 | 10.1016/s0721-9571(81)80004-x |
| Shah1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Megamonas hypermegale | 1982 |
Shah, Haroun N.; Collins, Matthew D. |
Reclassification of Bacteroides hypermegas (Harrison and Hansen) in a new genus Megamonas, as Megamonas hypermegas comb, nov. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene | 3(3), page(s): 394—398 | 10.1016/s0721-9571(82)80020-3 |
| Shah1982a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Mitsuokella multacida | 1982 |
Shah, Haroun N.; Collins, Matthew D. |
Reclassification of Bacteroides multiacidus (mitsuoka, terada, watanabe and uchida) in a new genus Mitsuokella , as Mitsuokella multiacidus comb. nov. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene | 3(4), page(s): 491—494 | 10.1016/s0721-9571(82)80006-9 |
| Shah1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Bacteroides oulorum | 1985 |
Shah, H. N.; Collins, M. D.; Watabe, J.; Mitsuoka, T. |
Bacteroides oulorum sp. nov., a Nonpigmented Saccharolytic Species from the Oral Cavity. | International Journal of Systematic Bacteriology | 35(2), page(s): 193—197 | 10.1099/00207713-35-2-193 |
| Shah1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Anaerorhabdus furcosa | 1986 |
Shah, H. N.; Collins, M. D. |
Reclassification of Bacteroides furcosus Veillon and Zuber (Hauduroy, Ehringer, Urbain, Guillot and Magrou) in a New Genus Anaerorhabdus, as Anaerorhabdus furcosus comb. nov. | Systematic and Applied Microbiology | 8(1-2), page(s): 86—88 | 10.1016/s0723-2020(86)80154-0 |
| Shah1988 | summary, general characteristics, enzymes, metabolites | Porphyromonas asaccharolytica, Porphyromonas gingivalis, Porphyromonas endodontalis | 1988 |
Shah, H.N.; Collins, D. M. |
Proposal for Reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a New Genus, Porphyromonas. | International Journal of Systematic Bacteriology | 38(1), page(s): 128—131 | 10.1099/00207713-38-1-128 |
| Shah1989 | genetics, taxonomy | Bacteroides fragilis, Odoribacter splanchnicus, Bacteroides caccae, Bacteroides eggerthii, Bacteroides ovatus, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides vulgatus | 1989 |
Shah, H.N.; Collins, D. M. |
Proposal To Restrict the Genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and Closely Related Species. | International Journal of Systematic Bacteriology | 39(1), page(s): 85—87 | 10.1099/00207713-39-1-85 |
| Shah1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides heparinolyticus, Prevotella oris, Prevotella melaninogenica, Prevotella bivia, Prevotella buccae, Prevotella buccalis, Prevotella corporis, Prevotella denticola, Prevotella disiens, Prevotella intermedia, Prevotella loescheii, Prevotella oralis, Prevotella ruminicola, Prevotella veroralis | 1990 |
Shah, H.N.; Collins, D. M. |
Notes: Prevotella, a New Genus To Include Bacteroides melaninogenicus and Related Species Formerly Classified in the Genus Bacteroides. | International Journal of Systematic Bacteriology | 40(2), page(s): 205—208 | 10.1099/00207713-40-2-205 |
| Shah1993 | genetics, taxonomy | Prevotella nigrescens | 1993 |
Shah, H. N.; Gharbia, S. E. |
Proposal of a new species Prevotella nigrescens sp. nov. among strains previously classified as Pr. intermedia. | FEMS Immunology {\&} Medical Microbiology | 6(2-3), page(s): 97—98 | 10.1111/j.1574-695x.1993.tb00309.x |
| Sharpe1957 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus helveticus | 1957 |
Sharpe, M. E.; Wheater, D. M. |
Lactobacillus helveticus. | Journal of General Microbiology | 16(3), page(s): 676—679 | 10.1099/00221287-16-3-676 |
| Sharpe1973 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus ruminis, Lactobacillus vitulinus | 1973 |
Sharpe, M. E.; Latham, M. J.; Garvie, E. I.; Zirngibl, J.; Kandler, O. |
Two New Species of Lactobacillus Isolated from the Bovine Rumen, Lactobacillus ruminis sp. nov. and Lactobacillus vitulinus sp. nov. | Journal of General Microbiology | 77(1), page(s): 37—49 | 10.1099/00221287-77-1-37 |
| Shaw1955 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Proteus mirabilis, Proteus vulgaris, Providencia rettgeri, Morganella morganii | 1955 |
Shaw, C.; Clarke, P. H. |
Biochemical Classification of Proteus and Providence Cultures. | Journal of General Microbiology | 13(1), page(s): 155—161 | 10.1099/00221287-13-1-155 |
| Shaw1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Kurthia zopfii, Kurthia gibsonii | 1983 |
Shaw, Steven; Keddie, Ronald M. |
A numerical taxonomic study of the genus Kurthia with a revised description of Kurthia zopfii and a description of Kurthia gibsonii sp. nov. | Systematic and Applied Microbiology | 4(2), page(s): 253—276 | 10.1016/s0723-2020(83)80054-x |
| Shaw1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Leuconostoc gelidum, Leuconostoc carnosum | 1989 |
Shaw, B. G.; Harding, C. D. |
Leuconostoc gelidum sp. nov. and Leuconostoc carnosum sp. nov. from Chill-Stored Meats. | International Journal of Systematic Bacteriology | 39(3), page(s): 217—223 | 10.1099/00207713-39-3-217 |
| Shetty2018 | summary, general characteristics, enzymes, utilisation, metabolites, butyrate | Anaerobutyricum hallii, Anaerobutyricum soehngenii | 2018 |
Shetty, Sudarshan A.; Zuffa, Simone; Bui, Thi Phuong Nam; Aalvink, Steven; Smidt, Hauke; Vos, Willem M. De |
Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(12), page(s): 3741—3746 | 10.1099/ijsem.0.003041 |
| Shida1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus aneurinolyticus | 1994 |
Shida, O.; Takagi, H.; Kadowaki, K.; H., Yano; M., A. B. E.; Udaka, S.; Komagata, K. |
Bacillus aneurinolyticus sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 44(1), page(s): 143—150 | 10.1099/00207713-44-1-143 |
| Shida1994a | genetics, taxonomy | Bacillus agri, Bacillus galactophilus | 1994 |
Shida, O.; Takagi, H.; Kadowaki, K.; Udaka, S.; Komagata, K. |
Bacillus galactophilus Is a Later Subjective Synonym of Bacillus agri. | International Journal of Systematic Bacteriology | 44(1), page(s): 172—173 | 10.1099/00207713-44-1-172 |
| Shida1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus reuszeri, Bacillus formosus, Bacillus borstelensis | 1995 |
Shida, O.; Takagi, H.; Kadowaki, K.; Udaka, S.; Nakamura, L. K.; Komagata, K. |
Proposal of Bacillus reuszeri sp. nov., Bacillus formosus sp. nov., nom. rev., and Bacillus borstelensis sp. nov., nom. rev. | International Journal of Systematic and Evolutionary Microbiology | 45(1), page(s): 93—100 | 10.1099/00207713-45-1-93 |
| Shida1996 | summary, general characteristics, genetics, taxonomy | Brevibacillus agri, Brevibacillus brevis, Brevibacillus centrosporus, Brevibacillus formosus, Brevibacillus borstelensis, Brevibacillus choshinensis, Brevibacillus laterosporus, Brevibacillus parabrevis, Brevibacillus thermoruber, Aneurinibacillus aneurinilyticus, Aneurinibacillus migulanus | 1996 |
Shida, O.; Takagi, H.; Kadowaki, K.; Komagata, K. |
Proposal for Two New Genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. | International Journal of Systematic Bacteriology | 46(4), page(s): 939—946 | 10.1099/00207713-46-4-939 |
| Shida1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus alginolyticus, Paenibacillus chondroitinus, Paenibacillus curdlanolyticus, Paenibacillus glucanolyticus, Paenibacillus kobensis, Paenibacillus thiaminolyticus | 1997 |
Shida, O.; Takagi, H.; Kadowaki, K.; Nakamura, L. K.; Komagata, K. |
Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the Genus Paenibacillus and Emended Description of the Genus Paenibacillus. | International Journal of Systematic Bacteriology | 47(2), page(s): 289—298 | 10.1099/00207713-47-2-289 |
| Shida1997a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus amylolyticus, Paenibacillus illinoisensis, Paenibacillus chibensis | 1997 |
Shida, O.; Takagi, H.; Kadowaki, K.; Nakamura, L. K.; Komagata, K. |
Emended Description of Paenibacillus amylolyticus and Description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. | International Journal of Systematic Bacteriology | 47(2), page(s): 299—306 | 10.1099/00207713-47-2-299 |
| Shin2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Blautia hominis | 2018 |
Shin, Na-Ri; Kang, Woorim; Tak, Euon Jung; Hyun, Dong-Wook; Kim, Pil Soo; Kim, Hyun Sik; Lee, June-Young; Sung, Hojun; Whon, Tae Woong; Bae, Jin-Woo |
Blautia hominis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 68(4), page(s): 1059—1064 | 10.1099/ijsem.0.002623 |
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Shiratori, Hatsumi; Sasaya, Kinuyo; Ohiwa, Hitomi; Ikeno, Hironori; Ayame, Shohei; Kataoka, Naoaki; Miya, Akiko; Beppu, Teruhiko; Ueda, Kenji |
Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge. | International Journal of Systematic and Evolutionary Microbiology | 59, page(s): 1764—1770 | 10.1099/ijs.0.003483-0 |
| Shirling1969 | summary, general characteristics, utilisation | Streptomyces misionensis | 1969 |
Shirling, E. B.; Gottlieb, D. |
Cooperative description of type cultures of Streptomyces. IV. Species descriptions from the second, third and fourth studies. | International Journal of Systematic Bacteriology | 19(4), page(s): 391—512 | 10.1099/00207713-19-4-391 |
| Shivaji2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus arsenicus | 2005 |
Shivaji, S.; Suresh, K.; Chaturvedi, Preeti; Dube, Smita; Sengupta, S. |
Bacillus arsenicus sp. nov., an arsenic-resistant bacterium isolated from a siderite concretion in West Bengal, India. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1123—1127 | 10.1099/ijs.0.63476-0 |
| Shivaji2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus aerius, Bacillus aerophilus, Bacillus stratosphericus, Bacillus altitudinis | 2006 |
Shivaji, S.; Chaturvedi, P.; Suresh, K.; Reddy, G. S. N.; Dutt, C. B. S.; Wainwright, M.; Narlikar, J. V.; Bhargava, P. M. |
Bacillus aerius sp. nov., Bacillus aerophilus sp. nov., Bacillus stratosphericus sp. nov. and Bacillus altitudinis sp. nov., isolated from cryogenic tubes used for collecting air samples from high altitudes. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1465—1473 | 10.1099/ijs.0.64029-0 |
| Shivani2017 | summary, general characteristics, utilisation | Halodesulfovibrio spirochaetisodalis, Desulfovibrio desulfuricans | 2017 |
Shivani, Y.; Subhash, Y.; Sasikala, Ch.; Ramana, Ch. V. |
Halodesulfovibrio spirochaetisodalis gen. nov. sp. nov. and reclassification of four Desulfovibrio spp. | International Journal of Systematic and Evolutionary Microbiology | 67(1), page(s): 87—93 | 10.1099/ijsem.0.001574 |
| Shkoporov2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Coprobacter fastidiosus | 2013 |
Shkoporov, Andrei N.; Khokhlova, Ekaterina V.; Chaplin, Andrei V.; Kafarskaia, Lyudmila I.; Nikolin, Alexei A.; Polyakov, Vladimir Yu.; Shcherbakova, Victoria A.; Chernaia, Zoya A.; Efimov, Boris A. |
Coprobacter fastidiosus gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from infant faeces. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/11), page(s): 4181—4188 | 10.1099/ijs.0.052126-0 |
| Shkoporov2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Alistipes inops, Coprobacter secundus | 2015 |
Shkoporov, Andrei N.; Chaplin, Andrei V.; Khokhlova, Ekaterina V.; Shcherbakova, Victoria A.; Motuzova, Oksana V.; Bozhenko, Vladimir K.; Kafarskaia, Lyudmila I.; Efimov, Boris A. |
Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt/12), page(s): 4580—4588 | 10.1099/ijsem.0.000617 |
| Shkoporov2016 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Ruthenibacterium lactatiformans | 2016 |
Shkoporov, Andrei N.; Chaplin, Andrei V.; Shcherbakova, Victoria A.; Suzina, Natalia E.; Kafarskaia, Lyudmila I.; Bozhenko, Vladimir K.; Efimov, Boris A. |
Ruthenibacterium lactatiformans gen. nov., sp. nov., an anaerobic, lactate-producing member of the family Ruminococcaceae isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 66(8), page(s): 3041—3049 | 10.1099/ijsem.0.001143 |
| Shukla2002 | summary, general characteristics, enzymes, uterus infection, health | Leptotrichia amnionii | 2002 |
Shukla, Sanjay K.; Meier, Paul R.; Mitchell, Paul D.; Frank, Daniel N.; Reed, Kurt D. |
Leptotrichia amnionii sp. nov., a Novel Bacterium Isolated from the Amniotic Fluid of a Woman after Intrauterine Fetal Demise. | Journal of Clinical Microbiology | 40(9), page(s): 3346—3349 | 10.1128/jcm.40.9.3346-3349.2002 |
| Simidu1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Shewanella algae | 1990 |
Simidu, U.; Kita-Tsukamoto, K.; Yasumoto, T.; Yotsu, M. |
Taxonomy of Four Marine Bacterial Strains That Produce Tetrodotoxin. | International Journal of Systematic Bacteriology | 40(4), page(s): 331—336 | 10.1099/00207713-40-4-331 |
| Simmering2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ruminococcus luti | 2002 |
Simmering, Rainer; Taras, David; Schwiertz, Andreas; Blay, Gwenaelle Le; Gruhl, Bärbel; Lawson, Paul A.; Collins, Matthew D.; Blaut, Michael |
Ruminococcus luti sp. nov., Isolated from a Human Faecal Sample. | Systematic and Applied Microbiology | 25(2), page(s): 189—193 | 10.1078/0723-2020-00112 |
| Singh2018 | Bacillus alkalilacus | 2018 |
Singh, Harjodh; Kaur, Manpreet; Sharma, Shivani; Kaur, Lakhwinder; Mishra, Sunita; Tanuku, Naga Radha Srinivas; Pinnaka, Anil Kumar |
Bacillus alkalilacus sp. nov., isolated from a sediment sample from a lake in India. | International Journal of Systematic and Evolutionary Microbiology | 68(5), page(s): 1665—1671 | 10.1099/ijsem.0.002726 | |
| Singh2019 | summary, general characteristics, antibiotics, utilisation | Kalamiella piersonii | 2019 |
Singh, Nitin Kumar; Wood, Jason M.; Mhatre, Snehit S.; Venkateswaran, Kasthuri |
Metagenome to phenome approach enables isolation and genomics characterization of Kalamiella piersonii gen. nov., sp. nov. from the International Space Station. | Applied Microbiology and Biotechnology | 103(11), page(s): 4483—4497 | 10.1007/s00253-019-09813-z |
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Sleat, R.; Mah, R. A. |
Clostridium populeti sp. nov., a Cellulolytic Species from a Woody-Biomass Digestor. | International Journal of Systematic Bacteriology | 35(2), page(s): 160—163 | 10.1099/00207713-35-2-160 |
| Slots1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Fusobacterium periodonticum | 1983 |
Slots, J.; Potts, T. V.; Mashimo, P. A. |
Fusobacterium periodonticum, A New Species from the Human Oral Cavity. | Journal of Dental Research | 62(9), page(s): 960—963 | 10.1177/00220345830620090901 |
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Smith, F. R.; Sherman, J. M. |
The Hemolytic Streptococci of Human Feces. | The Journal of Infectious Diseases | 62(2), page(s): 186—189 | 10.1093/infdis/62.2.186 |
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Smith, L. D.; King, E. |
Clostridium innocuum, sp. n., a sporeforming anaerobe isolated from human infections. | Journal of bacteriology | 83, page(s): 938—939 | 10.1128/jb.83.4.938-939.1962 |
| Smith1970 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium oceanicum | 1970 |
Smith, L. D. |
Clostridium oceanicum, sp. n., a sporeforming anaerobe isolated from marine sediments. | Journal of bacteriology | 103, page(s): 811—813 | 10.1128/jb.103.3.811-813.1970 |
| Smith1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium durum | 1974 |
Smith, Louis D. S.; Cato, Elizabeth P. |
Clostridium durum, sp. nov., the predominant organism in a sediment core from the Black Sea. | Canadian Journal of Microbiology | 20(10), page(s): 1393—1397 | 10.1139/m74-214 |
| Sneath1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Actinobacillus rossii, Actinobacillus seminis, Pasteurella bettii, Pasteurella lymphangitidis, Pasteurella mairi, Pasteurella trehalosi | 1990 |
Sneath, P. H. A.; Stevens, M. |
Actinobacillus rossii sp. nov., Actinobacillus seminis sp. nov., nom. rev., Pasteurella bettii sp. nov., Pasteurella lymphangitidis sp. nov., Pasteurella mairi sp. nov., and Pasteurella trehalosi sp. nov. | International Journal of Systematic Bacteriology | 40(2), page(s): 148—153 | 10.1099/00207713-40-2-148 |
| Song2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Clostridium bolteae | 2003 |
Song, Yuli; Liu, Chengxu; Molitoris, Denise R.; Tomzynski, Thomas J.; Lawson, Paul A.; Collins, Matthew D.; Finegold, Sydney M. |
Clostridium bolteae sp. nov., Isolated from Human Sources. | Systematic and Applied Microbiology | 26(1), page(s): 84—89 | 10.1078/072320203322337353 |
| Song2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Bacteroides nordii, Bacteroides salyersiae | 2004 |
Song, Y. L.; Liu, C. X.; McTeague, M.; Finegold, S. M. |
Bacteroides nordii' sp. nov. and 'Bacteroides salyersae' sp. nov. Isolated from Clinical Specimens of Human Intestinal Origin. | Journal of Clinical Microbiology | 42(12), page(s): 5565—5570 | 10.1128/jcm.42.12.5565-5570.2004 |
| Song2004a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium bartlettii | 2004 |
Song, Y. L.; Liu, C. X.; McTeague, M.; Summanen, P.; Finegold, S. M. |
Clostridium bartlettii sp. nov., isolated from human faeces. | Anaerobe | 10(3), page(s): 179—184 | 10.1016/j.anaerobe.2004.04.004 |
| Song2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Bacteroides goldsteinii | 2005 |
Song, Yuli; Liu, Chengxu; Lee, Julia; Bolan?os, Mauricio; Vaisanen, Marja-Liisa; Finegold, Sydney M. |
Bacteroides goldsteinii sp. nov.' Isolated from Clinical Specimens of Human Intestinal Origin. | Journal of Clinical Microbiology | 43(9), page(s): 4522—4527 | 10.1128/jcm.43.9.4522-4527.2005 |
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Song, Yuli; Könönen, Eija; Rautio, Merja; Liu, Chengxu; Bryk, Anne; Eerola, Erkki; Finegold, Sydney M. |
Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. | International Journal of Systematic and Evolutionary Microbiology | 56(8), page(s): 1985—1990 | 10.1099/ijs.0.64318-0 |
| Song2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Hydrogenoanaerobacterium saccharovorans | 2009 |
Song, L.; Dong, X. |
Hydrogenoanaerobacterium saccharovorans gen. nov., sp. nov., isolated from H2-producing UASB granules. | International Journal of Systematic and Evolutionary Microbiology | 59(2), page(s): 295—299 | 10.1099/ijs.0.000349-0 |
| Sorlin1999 | summary, general characteristics, enzymes, antibiotics, blood infection | Flexispira rappini | 1999 |
Sorlin, P.; Vandamme, P.; Nortier, J.; Hoste, B.; Rossi, C.; Pavlof, S.; Struelens, M. J. |
Recurrent Flexispira rappini bacteremia in an adult patient undergoing hemodialysis: case report. | Journal of Clinical Microbiology | 37, page(s): 1319—1323 | 10.1128/JCM.37.5.1319-1323.1999 |
| Souza2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Yersinia massiliensis | 2011 |
Souza, Roberto A.; Falcão, Deise P.; Falcão, Juliana P. |
Emended description of Yersinia massiliensis. | International Journal of Systematic and Evolutionary Microbiology | 61(5), page(s): 1094—1097 | 10.1099/ijs.0.021840-0 |
| Spanka1993 | summary, general characteristics, enzymes, utilisation | Bacillus cohnii | 1993 |
Spanka, R.; Fritze, D. |
Bacillus cohnii sp. nov., a New, Obligately Alkaliphilic, Oval-Spore-Forming Bacillus Species with Ornithine and Aspartic Acid Instead of Diaminopimelic Acid in the Cell Wall. | International Journal of Systematic Bacteriology | 43(1), page(s): 150—156 | 10.1099/00207713-43-1-150 |
| Sperry1976 | summary, utilisation | Eggerthella lenta | 1976 |
Sperry, J. F.; Wilkins, T. D. |
Arginine, a growth-limiting factor for Eubacterium lentum. | Journal of bacteriology | 127, page(s): 780—784 | 10.1128/jb.127.2.780-784.1976 |
| Spiegel1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, vagina | Mobiluncus curtisii subsp. Curtisii, Mobiluncus curtisii subsp. holmesii, Mobiluncus mulieris | 1984 |
Spiegel, C. A.; Roberts, M. |
Mobiluncus gen. nov., Mobiluncus curtisii subsp. curtisii sp. nov., Mobiluncus curtisii subsp. holmesii subsp. nov., and Mobiluncus mulieris sp. nov., Curved Rods from the Human Vagina. | International Journal of Systematic Bacteriology | 34(2), page(s): 177—184 | 10.1099/00207713-34-2-177 |
| Sprague2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Yersinia aleksiciae | 2005 |
Sprague, Lisa D.; Neubauer, Heinrich |
Yersinia aleksiciae sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 831—835 | 10.1099/ijs.0.63220-0 |
| Spring2001 | summary, general characteristics, enzymes, utilisation, water source | Limnobacter thiooxidans | 2001 |
Spring, S.; Kämpfer, P.; Schleifer, K. H. |
Limnobacter thiooxidans gen. nov., sp. nov., a novel thiosulfate-oxidizing bacterium isolated from freshwater lake sediment. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1463—1470 | 10.1099/00207713-51-4-1463 |
| Srinivasan2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Lysobacter soli | 2010 |
Srinivasan, Sathiyaraj; Kim, Myung Kyum; Sathiyaraj, Gayathri; Kim, Ho-Bin; Kim, Yeon-Ju; Yang, Deok-Chun |
Lysobacter soli sp. nov., isolated from soil of a ginseng field. | International Journal of Systematic and Evolutionary Microbiology | 60(7), page(s): 1543—1547 | 10.1099/ijs.0.016428-0 |
| Stabler2018 | antibiotics | Brevundimonas vesicularis | 2018 |
Stabler, Sarah N.; Mack, Benjamin; McCormack, Grant; Cheng, Matthew P. |
Brevundimonas vesicularis Causing Bilateral Pneumosepsis in an Immunocompetent Adult: A Case Report and Literature Review. | The Canadian Journal of Hospital Pharmacy | 71(3), page(s): 208—210 | 10.4212/cjhp.v71i3.2587 |
| Stackebrandt1995 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Kytococcus sedentarius, Dermacoccus nishinomiyaensis, Kocuria rosea, Micrococcus genus, Nesterenkonia genus, Kocuria varians | 1995 |
Stackebrandt, E.; C., Koch.; Gvozdiak, O.; Schumann, P. |
Taxonomic Dissection of the Genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. | International Journal of Systematic Bacteriology | 45(4), page(s): 682—692 | 10.1099/00207713-45-4-682 |
| Stackebrandt1997 | genetics, taxonomy | Lacrimispora sphenoides | 1997 |
Stackebrandt, E.; Sproer, C.; Rainey, F. A.; Burghardt, J.; Pauker, O.; Hippe, H. |
Phylogenetic Analysis of the Genus Desulfotomaculum: Evidence for the Misclassification of Desulfotomaculum guttoideum and Description of Desulfotomaculum orientis as Desulfosporosinus orientis gen. nov., comb. nov. | International Journal of Systematic Bacteriology | 47(4), page(s): 1134—1139 | 10.1099/00207713-47-4-1134 |
| Stadtman1972 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium barkeri | 1972 |
Stadtman, E. R.; Stadtman, T. C.; Pastan, I.; Smith, L. D. |
Clostridium barkeri sp. n. | Journal of bacteriology | 110, page(s): 758—760 | 10.1128/jb.110.2.758-760.1972 |
| Stanier1966 | summary, general characteristics, metabolites, utilisation | Pseudomonas tolaasii, Pseudomonas testosteroni, Pseudomonas maltophilia | 1966 |
Stanier, R. Y.; Palleroni, N. J.; Doudoroff, M. |
The Aerobic Pseudomonads a Taxonomic Study. | Journal of General Microbiology | 43(2), page(s): 159—271 | 10.1099/00221287-43-2-159 |
| Stanley1992 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter helveticus | 1992 |
Stanley, J.; Burnens, A. P.; Linton, D.; On, S. L. W.; Costas, M.; Owen, R. J. |
Campylobacter helveticus sp. nov., a new thermophilic species from domestic animals: characterization, and cloning of a species-specific DNA probe. | Journal of General Microbiology | 138(11), page(s): 2293—2303 | 10.1099/00221287-138-11-2293 |
| Stanley1994 | summary, general characteristics, enzymes, antibiotics, gastroenteritis | Helicobacter pullorum | 1994 |
Stanley, J.; Linton, D.; Burnens, A. P.; Dewhirst, F. E.; On, S. L. W.; Porter, A.; Owen, R. J.; Costas, M. |
Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis. | Microbiology | 140(12), page(s): 3441—3449 | 10.1099/13500872-140-12-3441 |
| Steele1988 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, clinical sources | Campylobacter jejuni subsp. doylei | 1988 |
Steele, T. W.; Owen, R. J. |
Notes: Campylobacter jejuni subsp. doylei subsp. nov., a Subspecies of Nitrate-Negative Campylobacters Isolated from Human Clinical Specimens. | International Journal of Systematic Bacteriology | 38(3), page(s): 316—318 | 10.1099/00207713-38-3-316 |
| Steer2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium hathewayi | 2001 |
Steer, Toni; Collins, Matthew D.; Gibson, Glenn R.; Hippe, Hans; Lawson, Paul A. |
Clostridium hathewayi sp. nov., from Human Faeces. | Systematic and Applied Microbiology | 24(3), page(s): 353—357 | 10.1078/0723-2020-00044 |
| Steppe2014 | health, IBD, inflammatory bowel disease, antibiotics, butyrate, probiotic | Butyricicoccus pullicaecorum | 2014 |
Steppe, Marjan; Nieuwerburgh, Filip Van; Vercauteren, Griet; Boyen, Filip; Eeckhaut, Venessa; Deforce, Dieter; Haesebrouck, Freddy; Ducatelle, Richard; Immerseel, Filip Van |
Safety assessment of the butyrate-producing Butyricicoccus pullicaecorum strain 25-3T, a potential probiotic for patients with inflammatory bowel disease, based on oral toxicity tests and whole genome sequencing. | Food and Chemical Toxicology | 72, page(s): 129—137 | 10.1016/j.fct.2014.06.024 |
| Stetter1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus bavaricus = Latilactobacillus sakei | 1980 |
Stetter, Heidi; Stetter, Karl Otto |
Lactobacillus bavaricus sp. nov., a new species of the subgenus Streptobacterium. | Zentralblatt für Bakteriologie | 1(1), page(s): 70—74 | 10.1016/s0172-5564(80)80018-2 |
| Steven2008 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Tumebacillus permanentifrigoris | 2008 |
Steven, B.; Chen, M. Q.; Greer, C. W.; Whyte, L. G.; Niederberger, T. D. |
Tumebacillus permanentifrigoris gen. nov., sp. nov., an aerobic, spore-forming bacterium isolated from Canadian high Arctic permafrost. | International Journal of Systematic and Evolutionary Microbiology | 58(6), page(s): 1497—1501 | 10.1099/ijs.0.65101-0 |
| Stewardson2015 | antibiotics, health, urinary tract infections | Faecalibacterium prausnitzii | 2015 |
Stewardson, A. J.; Gaïa, N.; F., P.; Malhotra-Kumar, S.; Delémont, C.; de Tejada, B. Martinez; Schrenzel, J.; Harbarth, S.; Lazarevic, V. |
Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota. | Clinical Microbiology and Infection | 21(4), page(s): 344.e1—344.e11 | 10.1016/j.cmi.2014.11.016 |
| Stine2017 | genetics, taxonomy | Flavobacterium | 2017 |
Stine, Cynthia B.; Li, Cong; Crosby, Tina C.; Hasbrouck, Nicholas R.; Lam, Claudia; Tadesse, Daniel A. |
Draft Whole-Genome Sequences of 18 Flavobacterium spp. | Genome Announcements | 5(46), | 10.1128/genomea.00865-17 |
| Subhash2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aneurinibacillus sediminis, Aneurinibacillus aneurinilyticus | 2017 |
Subhash, Y.; Kim, Hye-ji; Lee, Sang-Seob |
Aneurinibacillus sediminis sp. nov., isolated from lagoon sediments. | International Journal of Systematic and Evolutionary Microbiology | 67(8), page(s): 2544—2548 | 10.1099/ijsem.0.001963 |
| Summanen2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Porphyromonas somerae | 2005 |
Summanen PH, Durmaz B, Väisänen ML, Liu C, Molitoris D, Eerola E, Helander IM, Finegold SM. |
Porphyromonas somerae sp. nov., a Pathogen Isolated from Humans and Distinct from Porphyromonas levii. | Journal of Clinical Microbiology | 43(9), page(s): 4455—4459 | 10.1128/jcm.43.9.4455-4459.2005 |
| Sutton2018 | summary | Enterobacter hormaechei subsp. Hoffmannii, Enterobacter hormaechei subsp. xiangfangensis, Enterobacter roggenkampii, Enterobacter muelleri, Enterobacter asburiae | 2018 |
Sutton, Granger G.; Brinkac, Lauren M.; Clarke, Thomas H.; Fouts, Derrick E. |
Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes. | F1000Research | 7, page(s): 521 | 10.12688/f1000research.14566.2 |
| Svec2004 | summary, general characteristics, acid from carbohydrates | Staphylococcus vitulinus, Staphylococcus pulvereri | 2004 |
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Reclassification of Staphylococcus pulvereri Zakrzewska-Czerwinska et al. 1995 as a later synonym of Staphylococcus vitulinus Webster et al. 1994. | International Journal of Systematic and Evolutionary Microbiology | 54(6), page(s): 2213—2215 | 10.1099/ijs.0.63080-0 |
| Sylvesterr2002 | genetics, taxonomy | Streptococcus agalactiae | 2002 |
Moyo SR, Maeland JA, Bergh K. |
Typing of human isolates of Streptococcus agalactiae (group B streptococcus, GBS) strains from Zimbabwe. | Journal of Medical Microbiology | 51(7), page(s): 595—662 | 10.1099/0022-1317-51-7-595 |
| Takada2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Fusicatenibacter saccharivorans | 2013 |
Takada, Toshihiko; Kurakawa, Takashi; Tsuji, Hirokazu; Nomoto, Koji |
Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt/10), page(s): 3691—3696 | 10.1099/ijs.0.045823-0 |
| Takada2016 | summary, general characteristics, enzymes, metabolites, butyrate | Butyricicoccus desmolans, Butyricicoccus faecihominis | 2016 |
Takada, Toshihiko; Watanabe, Koichi; Makino, Hiroshi; Kushiro, Akira |
Reclassification of Eubacterium desmolans as Butyricicoccus desmolans comb. nov., and description of Butyricicoccus faecihominis sp. nov., a butyrate-producing bacterium from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 4125—4131 | 10.1099/ijsem.0.001323 |
| Takagi1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus brevis, Bacillus migulanus, Bacillus choshinensis, Bacillus parabrevis, Bacillus galactophilus, Brevibacillus agri | 1993 |
Takagi, H.; Shida, O.; Kadowaki, K.; Komagata, K.; Udaka, S. |
Characterization of Bacillus brevis with Descriptions of Bacillus migulanus sp. nov., Bacillus choshinensis sp. nov., Bacillus parabrevis sp. nov., and Bacillus galactophilus sp. nov. | International Journal of Systematic Bacteriology | 43(2), page(s): 221—231 | 10.1099/00207713-43-2-221 |
| Takakura2019 | summary, general characteristics, acid from carbohydrates | Dorea phocaeensis | 2019 |
Takakura, T.; Francis, R.; Anani, H.; Naud, S.; Raoult, D.; Khalil, J. Y. Bou |
Dorea phocaeensis sp. nov., a new bacterium isolated from the stool of a healthy 29-year-old male. | New Microbes and New Infections | 32, page(s): 100600 | 10.1016/j.nmni.2019.100600 |
| Takeda2008 | summary, general characteristics, utilisation | Prosthecobacter fluviatilis | 2008 |
Takeda, M.; Yoneya, A.; Miyazaki, Y.; Kondo, K.; Makita, H.; Kondoh, M.; Suzuki, I.; Koizumi, J.-i. |
Prosthecobacter fluviatilis sp. nov., which lacks the bacterial tubulin btubA and btubB genes. | International Journal of Systematic and Evolutionary Microbiology | 58(7), page(s): 1561—1565 | 10.1099/ijs.0.65787-0 |
| Takeuchi1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sphingobacterium faecium, Sphingobacterium piscium, Sphingobacterium heparinum, sphingobacterium thalpophilum, Flavobacterium yabuuchiae, Sphingobacterium spiritivorum | 1992 |
Takeuchi, M. Akiro; Yokota, Akira |
Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov., sphingobacterium thalpophilum comb. nov. and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. | The Journal of General and Applied Microbiology | 38(5), page(s): 465—482 | 10.2323/jgam.38.465 |
| Takeuchi1995 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Brachybacterium conglomeratum, Brachybacterium paraconglomeratum, Brachybacterium rhamnosum | 1995 |
Takeuchi, M.; C.-X., Fang; Yokota, A. |
Taxonomic Study of the Genus Brachybacterium: Proposal of Brachybacterium conglomeratum sp. nov., nom. rev., Brachybacterium paraconglomeratum sp. nov., and Brachybacterium rhamnosum sp. nov. | International Journal of Systematic Bacteriology | 45(1), page(s): 160—168 | 10.1099/00207713-45-1-160 |
| Takeuchi1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium luteolum, Microbacterium schleiferi, Microbacterium testaceum, Microbacterium kitamiense, Microbacterium liquefaciens, Microbacterium esteraromaticum | 1998 |
Takeuchi, M.; Hatano, K. |
Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. | International Journal of Systematic Bacteriology | 48(3), page(s): 739—747 | 10.1099/00207713-48-3-739 |
| Takeuchi1998a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium maritypicum, Microbacterium chocolatum | 1998 |
Takeuchi, M.; Hatano, K. |
Proposal of six new species in the genus Microbacterium and transfer of Flavobacterium marinotypicum ZoBell and Upham to the genus Microbacterium as Microbacterium maritypicum comb. nov. | International Journal of Systematic Bacteriology | 48(3), page(s): 973—982 | 10.1099/00207713-48-3-973 |
| Takizawa1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus kefirgranum, Lactobacillus parakefir | 1994 |
Takizawa, S.; Kojima, S.; Tamura, S.; Fujinaga, S.; Benno, Y.; Nakase, T. |
Lactobacillus kefirgranum sp. nov. and Lactobacillus parakefir sp. nov., Two New Species from Kefir Grains. | International Journal of Systematic Bacteriology | 44(3), page(s): 435—439 | 10.1099/00207713-44-3-435 |
| Tall2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Massilimicrobiota timonensis | 2019 |
Tall, M. L.; Ndongo, S.; Ngom, I. I.; Delerce, J.; Khelaifia, S.; Raoult, D.; Fournier, P.-E.; Levasseur, A. |
Massilimicrobiota timonensis gen. nov., sp. nov., a new bacterium isolated from the human gut microbiota. | New Microbes and New Infections | 31, page(s): 100574 | 10.1016/j.nmni.2019.100574 |
| Tall2020 | summary, general characteristics, enzymes, acid from carbohydrates | Anaerococcus marasmi | 2020 |
Tall, M. L.; Pham, T. P. T.; Bellali, S.; Ngom, I. I.; Delerce, J.; Lo, C. I.; Raoult, D.; Fournier, P.-E.; Levasseur, A. |
Anaerococcus marasmi sp. nov., a new bacterium isolated from human gut microbiota. | New Microbes and New Infections | 35, page(s): 100655 | 10.1016/j.nmni.2020.100655 |
| Tamaoka1987 | summary, general characteristics, utilisation | Comamonas acidovorans, Comamonas testosteroni | 1987 |
Tamaoka, J.; Ha, D.-M.; Komagata, K. |
Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an Emended Description of the Genus Comamonas. | International Journal of Systematic Bacteriology | 37(1), page(s): 52—59 | 10.1099/00207713-37-1-52 |
| Tamura1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Leclercia adecarboxylata | 1986 |
Tamura, Kazumichi; Sakazaki, Riichi; Kosako, Yoshimasa; Yoshizaki, Etsuo |
Leclercia adecarboxylata Gen. Nov., Comb. Nov., formerly known as Escherichia adecarboxylata. | Current Microbiology | 13(4), page(s): 179—184 | 10.1007/bf01568943 |
| Tanasupawat1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Pediococcus pentosaceus, Pediococcus acidilactici | 1993 |
Tanasupawat, S.; Okada, S.; Kozaki, M.; Komagata, K. |
Characterization of Pediococcus pentosaceus and Pediococcus acidilactici Strains and Replacement of the Type Strain of P. acidilactici with the Proposed Neotype DSM 20284: Request for an Opinion. | International Journal of Systematic Bacteriology | 43(4), page(s): 860—863 | 10.1099/00207713-43-4-860 |
| Tang2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Kocuria halotolerans | 2009 |
Tang, S.-K.; Wang, Y.; Lou, K.; Mao, P.-H.; Xu, L.-H.; Jiang, C.-L.; Kim, C.-J.; Li, W.-J. |
Kocuria halotolerans sp. nov., an actinobacterium isolated from a saline soil in China. | International Journal of Systematic and Evolutionary Microbiology | 59(6), page(s): 1316—1320 | 10.1099/ijs.0.006627-0 |
| Tanizawa2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus paragasseri, Lactobacillus gasseri | 2018 |
Tanizawa, Yasuhiro; Tada, Ipputa; Kobayashi, Hisami; Endo, Akihito; Maeno, Shintaro; Toyoda, Atsushi; Arita, Masanori; Nakamura, Yasukazu; Sakamoto, Mitsuo; Ohkuma, Moriya; Tohno, Masanori |
Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses. | International Journal of Systematic and Evolutionary Microbiology | 68(11), page(s): 3512—3517 | 10.1099/ijsem.0.003020 |
| Tanizawa2020 | Lactobacillus buchneri subsp. silagei | 2020 |
Tanizawa, Yasuhiro; Kobayashi, Hisami; Nomura, Masaru; Sakamoto, Mitsuo; Arita, Masanori; Nakamura, Yasukazu; Ohkuma, Moriya; Tohno, Masanori |
Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage. | International Journal of Systematic and Evolutionary Microbiology | 70(5), page(s): 3111—3116 | 10.1099/ijsem.0.004138 | |
| Tanner1981 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, oral cavity | Campylobacter concisus, Wolinella succinogenes, Bacteroides gracilis, Wolinella recta, Eikenella corrodens | 1981 |
Tanner, A. C. R.; Badger, S.; C.-H., L. A. I.; Listgarten, M. A.; Visconti, R. A.; Socransky, S. S. |
Wolinella gen. nov., Wolinella succinogenes (Vibrio succinogenes Wolin et al.) comb. nov., and Description of Bacteroides gracilis sp. nov., Wolinella recta sp. nov., Campylobacter concisus sp. nov., and Eikenella corrodens from Humans with Periodontal Disease. | International Journal of Systematic Bacteriology | 31(4), page(s): 432—445 | 10.1099/00207713-31-4-432 |
| Tanner1984 | summary, general characteristics, metabolites, antibiotics, utilisation | Wolinella curva | 1984 |
Tanner, A. C. R.; Listgarten, M. A.; Ebersole, J. L. |
Wolinella curva sp. nov.: Vibrio succinogenes of Human Origin. | International Journal of Systematic Bacteriology | 34(3), page(s): 275—282 | 10.1099/00207713-34-3-275 |
| Tanner1986 | summary, general characteristics, enzymes, acid from carbohydrates, oral cavity | Bacteroides forsythus | 1986 |
Tanner, A. C. R.; Listgarten, M. A.; Ebersole, J. L.; Strzempko, M. N. |
Bacteroides forsythus sp. nov., a Slow-Growing, Fusiform Bacteroides sp. from the Human Oral Cavity. | International Journal of Systematic Bacteriology | 36(2), page(s): 213—221 | 10.1099/00207713-36-2-213 |
| Taras2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Dorea formicigenerans, Dorea longicatena | 2002 |
Taras, David; Simmering, Rainer; Collins, Matthew D.; Lawson, Paul A.; Blaut, Michael |
Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 52(2), page(s): 423—428 | 10.1099/00207713-52-2-423 |
| Tate1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rhodococcus erythropolis | 1974 |
Tate, R. L.; Ensign, J. C. |
A new species of Arthrobacter which degrades picolinic acid. | Canadian Journal of Microbiology | 20(5), page(s): 691—694 | 10.1139/m74-105 |
| Taylor2006 | antibiotics | Streptococcus equi subsp. Equi | 2006 |
Taylor, Sandra D.; Wilson, W. David |
Streptococcus equi subsp. equi (Strangles) Infection. | Clinical Techniques in Equine Practice | 5(3), page(s): 211—217 | 10.1053/j.ctep.2006.03.016 |
| Tee1996 | summary, general characteristics, enzymes, metabolites, antibiotics, liver abscess | Desulfovibrio fairfieldensis | 1996 |
Tee, W.; Dyall-Smith, M.; Woods, W.; Eisen, D. |
Probable new species of Desulfovibrio isolated from a pyogenic liver abscess. | Journal of Clinical Microbiology | 34(7), page(s): 1760—1764 | 10.1128/jcm.34.7.1760-1764.1996 |
| Thawai2004 | summary, general characteristics, enzymes, metabolites, utilisation | Micromonospora aurantiaca | 2004 |
Thawai, Chitti; Tanasupawat, Somboon; Itoh, Takashi; Suwanborirux, Khanit; Kudo, Takuji |
Micromonospora aurantionigra sp. nov., Isolated from a Peat Swamp Forest in Thailand. | Actinomycetologica | 18(1), page(s): 8—14 | 10.3209/saj.18_8 |
| Thierry2004 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Pseudoxanthomonas mexicana, Pseudoxanthomonas japonensis, Pseudoxanthomonas broegbernensis | 2004 |
Thierry, Sébastien; Macarie, Hervé; Iizuka, Takashi; Geissdörfer, Walter; Assih, Essokazi A.; Spanevello, Mark; Verhe, Frédéric; Thomas, Pierre; Fudou, Ryosuke; Monroy, Oscar; Labat, Marc; Ouattara, Aboubakar S. |
Pseudoxanthomonas mexicana sp. nov. and Pseudoxanthomonas japonensis sp. nov., isolated from diverse environments, and emended descriptions of the genus Pseudoxanthomonas Finkmann et al. 2000 and of its type species. | International Journal of Systematic and Evolutionary Microbiology | 54(6), page(s): 2245—2255 | 10.1099/ijs.0.02810-0 |
| Warnick2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium phytofermentans | 2002 |
Warnick, Thomas A., Barbara A. Methe and Susan B. Leschine |
Clostridium phytofermentans sp. nov., a cellulolytic mesophile from forest soil. | International Journal of Systematic and Evolutionary Microbiology | 52(4), page(s): 1155—1160 | 10.1099/ijs.0.02125-0 |
| Thompson2003 | summary, general characteristics, enzymes, metabolites | Grimontia hollisae | 2003 |
Thompson, F. L. |
Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(5), page(s): 1615—1617 | 10.1099/ijs.0.02660-0 |
| Thorel1990 | summary, general characteristics, enzymes, antibiotics | Mycobacterium avium, Mycobacterium avium subsp. avium, Mycobacterium avium subsp. paratuberculosis, Mycobacterium avium subsp. silvaticum | 1990 |
Thorel, M.-F.; Krichevsky, M.; Levy-Frebault, V. Vincent |
Numerical Taxonomy of Mycobactin-Dependent Mycobacteria, Emended Description of Mycobacterium avium, and Description of Mycobacterium avium subsp. avium subsp. nov., Mycobacterium avium subsp. paratuberculosis subsp. nov., and Mycobacterium avium subsp. silvaticum subsp. nov. | International Journal of Systematic Bacteriology | 40(3), page(s): 254—260 | 10.1099/00207713-40-3-254 |
| Tindall2017 | genetics, taxonomy | Enterobacter aerogenes, Klebsiella mobilis | 2017 |
Tindall, B. J.; Sutton, G.; Garrity, G. M. |
Enterobacter aerogenes Hormaeche and Edwards 1960 (Approved Lists 1980) and Klebsiella mobilis Bascomb et al. 1971 (Approved Lists 1980) share the same nomenclatural type (ATCC 13048) on the Approved Lists and are homotypic synonyms, with consequences for the name Klebsiella mobilis Bascomb et al. 1971 (Approved Lists 1980). | International Journal of Systematic and Evolutionary Microbiology | 67(2), page(s): 502—504 | 10.1099/ijsem.0.001572 |
| Togo2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, health, obesity | Butyricimonas phoceensis | 2016 |
Togo, A. H.; Diop, A.; Dubourg, G.; Nguyen, T. T.; Andrieu, C.; Caputo, A.; Couderc, C.; Fournier, P.-E.; Maraninchi, M.; Valero, R.; Raoult, D.; Million, M. |
Butyricimonas phoceensis sp. nov., a new anaerobic species isolated from the human gut microbiota of a French morbidly obese patient. | New Microbes and New Infections | 14, page(s): 38—48 | 10.1016/j.nmni.2016.07.010 |
| Togo2016a | summary, general characteristics, obesity, bariatric surgery | Eisenbergiella massiliensis | 2016 |
Togo, A. H.; Khelaifia, S.; Bittar, F.; Maraninchi, M.; Raoult, D.; Million, M. |
'Eisenbergiella massiliensis', a new species isolated from human stool collected after bariatric surgery. | New Microbes and New Infections | 13, page(s): 15—16 | 10.1016/j.nmni.2016.05.015 |
| Togo2016b | summary, bariatric surgery | Negativicoccus massiliensis | 2016 |
Togo, A. H.; Khelaifia, S.; Valero, R.; Cadoret, F.; Raoult, D.; Million, M. |
'Negativicoccus massiliensis', a new species identified from human stool from an obese patient after bariatric surgery. | New Microbes and New Infections | 13, page(s): 43—44 | 10.1016/j.nmni.2016.05.018 |
| Togo2016c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Paenibacillus ihumii | 2016 |
Togo, A. H.; Khelaifia, S.; Lagier, J.-C.; Caputo, A.; Robert, C.; Fournier, P.-E.; Maraninchi, M.; Valero, R.; Raoult, D.; Million, M. |
Non-contiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5. | New Microbes and New Infections | 10, page(s): 142—150 | 10.1016/j.nmni.2016.01.013 |
| Togo2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Fournierella massiliensis | 2017 |
Togo, Amadou Hamidou; Durand, Guillaume; Khelaifia, Saber; Armstrong, Nicholas; Robert, Catherine; Cadoret, Frédéric; Pinto, Fabrizio Di; Delerce, Jérémy; Levasseur, Anthony; Raoult, Didier; Million, Matthieu |
Fournierella massiliensis gen. nov., sp. nov., a new human-associated member of the family Ruminococcaceae. | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1393—1399 | 10.1099/ijsem.0.001826 |
| Togo2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, obesity | Mediterraneibacter faecis, Mediterraneibacter lactaris, Mediterraneibacter torques, Mediterraneibacter gnavus, Mediterraneibacter glycyrrhizinilyticus, Mediterraneibacter massiliensis, Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus, Ruminococcus gauvreauii, Ruminococcus albus, Ruminococcus bromii, Ruminococcus callidus, Ruminococcus champanellensis, Ruminococcus flavefaciens | 2018 |
Togo, Amadou Hamidou; Diop, Awa; Bittar, Fadi; Maraninchi, Marie; Valero, René; Armstrong, Nicholas; Dubourg, Grégory; Labas, Noémie; Richez, Magali; Delerce, Jeremy; Levasseur, Anthony; Fournier, Pierre-Edouard; Raoult, Didier; Million, Matthieu |
Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov. | Antonie van Leeuwenhoek | 111(11), page(s): 2107—2128 | 10.1007/s10482-018-1104-y |
| Tohno2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Aerococcus vaginalis, Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii, Aerococcus sanguinicola | 2014 |
Tohno, Masanori; Kitahara, Maki; Matsuyama, Shuichi; Kimura, Koji; Ohkuma, Moriya; Tajima, Kiyoshi |
Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/4), page(s): 1229—1236 | 10.1099/ijs.0.058081-0 |
| Tohya2019 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Pseudomonas asiatica | 2019 |
Tohya, Mari; Watanabe, Shin; Teramoto, Kanae; Uechi, Kohei; Tada, Tatsuya; Kuwahara-Arai, Kyoko; Kinjo, Takeshi; Maeda, Shiro; Nakasone, Isamu; Zaw, Ni Ni; Mya, San; Zan, Khin Nyein; Tin, Htay Htay; Fujita, Jiro; Kirikae, Teruo |
Pseudomonas asiatica sp. nov., isolated from hospitalized patients in Japan and Myanmar. | International Journal of Systematic and Evolutionary Microbiology | 69(5), page(s): 1361—1368 | 10.1099/ijsem.0.003316 |
| Tong2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Streptococcus oligofermentans | 2003 |
Tong, Huichun; Gao, Xuejun; Dong, Xiuzhu |
Streptococcus oligofermentans sp. nov., a novel oral isolate from caries-free humans. | International Journal of Systematic and Evolutionary Microbiology | 53(4), page(s): 1101—1104 | 10.1099/ijs.0.02493-0 |
| Torre2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Salmonella enterica subsp. enterica | 2005 |
de la Torre, E.; Tello, M.; Mateu, E. M.; Torre, E. |
Use of Biochemical Kinetic Data To Determine Strain Relatedness among Salmonella enterica subsp. enterica Isolates. | Journal of Clinical Microbiology | 43(11), page(s): 5419—5424 | 10.1128/jcm.43.11.5419-5424.2005 |
| Torriani1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus curvatus subsp. Curvatus, Lactobacillus curvatus subsp. melibiosus, Lactobacillus sake subsp. Sake, Lactobacillus sake subsp. carnosus | 1996 |
Torriani, S.; Reenen, C. A. Van; Klein, G.; Reuter, G.; Dellaglio, F.; Dicks, L. M. T. |
Lactobacillus curvatus subsp. curvatus subsp. nov. and Lactobacillus curvatus subsp. melibiosus subsp. nov. and Lactobacillus sake subsp. sake subsp. nov. and Lactobacillus sake subsp. carnosus subsp. nov., New Subspecies of Lactobacillus curvatus Abo-Elnaga and Kandler 1965 and Lactobacillus sake Katagiri, Kitahara, and Fukami 1934 (Klein et al. 1996, Emended Descriptions), Respectively. | International Journal of Systematic Bacteriology | 46(4), page(s): 1158—1163 | 10.1099/00207713-46-4-1158 |
| Tortoli2005 | summary, general characteristics, enzymes, metabolites, antibiotics | Mycobacterium florentinum | 2005 |
Tortoli, Enrico; Rindi, Laura; Goh, Khye S.; Katila, Marja L.; Mariottini, Alessandro; Mattei, Romano; Mazzarelli, Gianna; Suomalainen, Sini; Torkko, Pirjo; Rastogi, Nalin |
Mycobacterium florentinum sp. nov., isolated from humans. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1101—1106 | 10.1099/ijs.0.63485-0 |
| Tortoli2009 | summary, general characteristics, antibiotics | Mycolicibacterium insubricum | 2009 |
Tortoli, E.; Baruzzo, S.; Heijdra, Y.; Klenk, H.-P.; Lauria, S.; Mariottini, A.; van Ingen, J. |
Mycobacterium insubricum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(6), page(s): 1518—1523 | 10.1099/ijs.0.003459-0 |
| Tortoli2016 | genetics, taxonomy | Mycobacterium abscessus, Mycobacterium abscessus subsp. abscessus, Mycobacteroides abscessus subsp. bolletii, Mycobacterium abscessus subsp. massiliense, Mycobacteroides abscessus | 2016 |
Tortoli, Enrico; Kohl, Thomas A.; Brown-Elliott, Barbara A.; Trovato, Alberto; Leao, Sylvia Cardoso; Garcia, Maria Jesus; Vasireddy, Sruthi; Turenne, Christine Y.; Griffith, David E.; Philley, Julie V.; Baldan, Rossella; Campana, Silvia; Cariani, Lisa; Colombo, Carla; Taccetti, Giovanni; Teri, Antonio; Niemann, Stefan; Jr., Richard J. Wallace; Cirillo, Daniela M. |
Emended description of Mycobacterium abscessus, Mycobacterium abscessus subsp. abscessus and Mycobacterium abscessus subsp. bolletii and designation of Mycobacterium abscessus subsp. massiliense comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4471—4479 | 10.1099/ijsem.0.001376 |
| Totten1985 | summary, general characteristics, enzymes, antibiotics | Campylobacter cinaedi, Campylobacter fennelliae | 1985 |
Totten, P. A.; Fennell, C. L.; Tenover, F. C.; Wezenberg, J. M.; Perine, P. L.; Stamm, W. E.; Holmes, K. K. |
Campylobacter cinaedi (sp. nov.) and Campylobacter fennelliae (sp, nov.): Two New Campylobacter Species Associated with Enteric Disease in Homosexual Men. | Journal of Infectious Diseases | 151(1), page(s): 131—139 | 10.1093/infdis/151.1.131 |
| Traore2016 | summary | Senegalia massiliensis | 2016 |
Traore, S. I.; Cadoret, F.; Fournier, P. E.; Raoult, D. |
'Senegalia massiliensis', a new bacterium isolated from the human gastrointestinal tract. | New Microbes and New Infections | 12, page(s): 88—89 | 10.1016/j.nmni.2016.05.005 |
| Traore2017 | summary, general characteristics, enzymes | Blautia phocaeensis, Lachnoclostridium edouardi | 2017 |
Traore, S. I.; Azhar, E. I.; Yasir, M.; Bibi, F.; Fournier, P.-E.; Jiman-Fatani, A. A.; Delerce, J.; Cadoret, F.; Lagier, J.-C.; Raoult, D. |
Description of 'Blautia phocaeensis' sp. nov. and 'Lachnoclostridium edouardi' sp. nov., isolated from healthy fresh stools of Saudi Arabia Bedouins by culturomics. | New Microbes and New Infections | 19, page(s): 129—131 | 10.1016/j.nmni.2017.05.017 |
| Traore2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Raoultibacter massiliensis, Raoultibacter timonensis | 2019 |
Traore, Sory Ibrahima; Bilen, Melhem; Beye, Mamadou; Diop, Awa; Fonkou, Maxime Descartes Mbogning; Tall, Mamadou Lamine; Michelle, Caroline; Yasir, Muhammad; Azhar, Esam Ibraheem; Bibi, Fehmida; Bittar, Fadi; Jiman-Fatani, Asif Ahmad; Daoud, Ziad; Cadoret, Fréderic; Fournier, Pierre-Edouard; Edouard, Sophie |
Non-contiguous finished genome sequence and description of Raoultibacter massiliensis gen. nov., sp. nov. and Raoultibacter timonensis sp. nov, two new bacterial species isolated from the human gut. | MicrobiologyOpen | 8(6), page(s): e00758 | 10.1002/mbo3.758 |
| Traore2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Senegalia massiliensis | 2020 |
Traore, S. I.; Ngom, I. I.; Lo, C. I.; Pinto, F. Di; Sokhna, C.; Fournier, P.-E.; Raoult, D.; Fenollar, F. |
Detailed description of Senegalia massiliensis strain SIT17T, a bacterium isolated from the human gut. | New Microbes and New Infections | 37, page(s): 100700 | 10.1016/j.nmni.2020.100700 |
| TrivettMoore1997 | summary, general characteristics, enzymes, antibiotics, blood infection, AIDS | Helicobacter westmeadii, Helicobacter cinaedi, Helicobacter fennelliae, Helicobacter pylori, Helicobacter pullorum | 1997 |
Trivett-Moore, N. L.; Rawlinson, W. D.; Yuen, M.; Gilbert, G. L. |
Helicobacter westmeadii sp. nov., a new species isolated from blood cultures of two AIDS patients. | Journal of Clinical Microbiology | 35(5), page(s): 1144—1150 | 10.1128/jcm.35.5.1144-1150.1997 |
| Trotha2002 | summary, general characteristics, antibiotics, appendectomy infection | Blastobacter denitrificans | 2002 |
Trotha, Rene; Guenther, Gudrun; König, Wolfgang; König, Brigitte |
Disseminated Infection Due to Blastobacter denitrificans following Routine Appendectomy in an Adolescent. | Journal of Clinical Microbiology | 40(9), page(s): 3538—3539 | 10.1128/jcm.40.9.3538-3539.2002 |
| Trott1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Serpulina pilosicoli | 1996 |
Trott, D. J.; Stanton, T. B.; Jensen, N. S.; Duhamel, G. E.; Johnson, J. L.; Hampson, D. J. |
Serpulina pilosicoli sp. nov., the Agent of Porcine Intestinal Spirochetosis. | International Journal of Systematic Bacteriology | 46(1), page(s): 206—215 | 10.1099/00207713-46-1-206 |
| Troxler2001 | antibiotic, antimicrobial | Brevibacterium casei, Dermabacter hominis, Corynebacterium otitidis | 2001 |
Troxler, R.; Funke, G.; von Graevenitz, A.; Stock, I. |
Natural Antibiotic Susceptibility of Recently Established Coryneform Bacteria. | European Journal of Clinical Microbiology and Infections Diseases | 20(5), page(s): 0315—0323 | 10.1007/s100960100503 |
| Truelzsch2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Staphylococcus pettenkoferi | 2002 |
Trülzsch, Konrad; Rinder, Heinz; Trcek, Janja; Bader, Lutz; Wilhelm, Ulrike; Heesemann, Jürgen |
Staphylococcus pettenkoferi', a novel staphylococcal species isolated from clinical specimens. | Diagnostic Microbiology and Infectious Disease | 43(3), page(s): 175—182 | 10.1016/s0732-8893(02)00399-1 |
| Truelzsch2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Staphylococcus pettenkoferi | 2007 |
Trülzsch, Konrad; Grabein, Béatrice; Schumann, Peter; Mellmann, Alexander; Antonenka, Uladzimir; Heesemann, Jürgen; Becker, Karsten |
Staphylococcus pettenkoferi sp. nov., a novel coagulase-negative staphylococcal species isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 57(7), page(s): 1543—1548 | 10.1099/ijs.0.64381-0 |
| Tsubokura1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paracoccus carotinifaciens | 1999 |
Tsubokura, Akira; Yoneda, Hisashi; Mizuta, Haruyoshi |
Paracoccus carotinifaciens sp. nov., a new aerobic Gram-negative astaxanthin-producing bacterium. | International Journal of Systematic and Evolutionary Microbiology | 49(1), page(s): 277—282 | 10.1099/00207713-49-1-277 |
| Tsukamura1966 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Mycobacterium avium, Mycobacterium fortuitum | 1966 |
Tsukamura, M. |
Adansonian Classification of Mycobacteria. | Journal of General Microbiology | 45(2), page(s): 253—273 | 10.1099/00221287-45-2-253 |
| Tsukamura1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, pulmonary disease | Gordonia terrae | 1971 |
Tsukamura, M. |
Proposal of a New Genus, Gordona, for Slightly Acid-fast Organisms Occurring in Sputa of Patients With Pulmonary Disease and in Soil. | Journal of General Microbiology | 68(1), page(s): 15—26 | 10.1099/00221287-68-1-15 |
| Tsukamura1991 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Rhodococcus rhodochrous | 1991 |
Tsukamura, M.; Yano, I.; Kudo, T.; Miyama, A. |
Rhodococcus roseus sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 41(3), page(s): 385—389 | 10.1099/00207713-41-3-385 |
| Tunnicliff1925 | summary, general characteristics | Bacillus Gonidiaformans | 1925 |
Tunnicliff, R.; Jackson, L. |
Bacillus Gonidiaformans (N.SP.): An Hitherto Undescribed Organism. | Journal of Infectious Diseases | 36(5), page(s): 430—438 | 10.1093/infdis/36.5.430 |
| Tuohy2000 | antibiotic, antimicrobial | Abiotrophia defectiva | 2000 |
Tuohy, Marion J.; Procop, Gary W.; Washington, John A. |
Antimicrobial susceptibility of Abiotrophia adiacens and Abiotrophia defectiva. | Diagnostic Microbiology and Infectious Disease | 38(3), page(s): 189—191 | 10.1016/s0732-8893(00)00194-2 |
| Uddin2015 | antibiotic, antimicrobial | Bacillus nealsonii | 2015 |
Uddin, Gazi Md. Noor; Larsen, Marianne Halberg; Christensen, Henrik; Aarestrup, Frank M.; Phu, Tran Minh; Dalsgaard, Anders |
Identification and Antimicrobial Resistance of Bacteria Isolated from Probiotic Products Used in Shrimp Culture. | PLoS ONE | 10(7), page(s): e0132338 | 10.1371/journal.pone.0132338 |
| Ueki2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Anaerotaenia torta, Anaerocolumna cellulosilytica, Anaerocolumna aminovalerica, Anaerocolumna jejuense, Anaerocolumna xylanovorans | 2016 |
Ueki, Atsuko; Ohtaki, Yoshimi; Kaku, Nobuo; Ueki, Katsuji |
Descriptions of Anaerotaenia torta gen. nov., sp. nov. and Anaerocolumna cellulosilytica gen. nov., sp. nov. isolated from a methanogenic reactor of cattle waste and reclassification of Clostridium aminovalericum, Clostridium jejuense and Clostridium xylanovorans as Anaerocolumna species. | International Journal of Systematic and Evolutionary Microbiology | 66(8), page(s): 2936—2943 | 10.1099/ijsem.0.001123 |
| Uematsu1993 | summary, general characteristics, metabolites, utilisation, oral cavity | Eubacterium saphenum | 1993 |
Uematsu, H.; Nakazawa, F.; Ikeda, T.; Hoshino, E. |
Eubacterium saphenus sp. nov., Isolated from Human Periodontal Pockets. | International Journal of Systematic Bacteriology | 43(2), page(s): 302—304 | 10.1099/00207713-43-2-302 |
| Ursing1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Yersinia frederiksenii | 1980 |
Ursing, Jan; Brennert, J. Don; Bercovier, Hervé; Fanning, G. Richard; Steigerwalt, Arnold G.; Brault, Jacqueline; Mollaret, H. H. |
Yersinia frederiksenii: A new species of enterobacteriaceae composed of rhamnose-positive strains (formerly called atypicalyersinia enterocolitica orYersinia enterocolitica-Like). | Current Microbiology | 4(4), page(s): 213—217 | 10.1007/bf02605859 |
| Vancanneyt2005 | summary, general characteristics, acid from carbohydrates | Lactobacillus parabuchneri, Lactobacillus ferintoshensis | 2005 |
Vancanneyt, Marc; Engelbeen, Katrien; Wachter, Marjan De; Vandemeulebroecke, Katrien; Cleenwerck, Ilse; Swings, Jean |
Reclassification of Lactobacillus ferintoshensis as a later heterotypic synonym of Lactobacillus parabuchneri. | International Journal of Systematic and Evolutionary Microbiology | 55(5), page(s): 2195—2198 | 10.1099/ijs.0.63779-0 |
| Vandamme1991 | summary, general characteristics | Campylobacter coli, Campylobacter concisus, Campylobacter curvus, Campylobacter fetus subsp. fetus, Campylobacter hyointestinalis subsp. hyointestinalis, Campylobacter jejuni subsp. doylei, Campylobacter jejuni subsp. jejuni, Campylobacter lari subsp. concheus, Campylobacter lari subsp. lari, Campylobacter rectus, Campylobacter upsaliensis | 1991 |
Vandamme, P.; Falsen, E.; Rossau, R.; Hoste, B.; Segers, P.; Tytgat, R.; J. De, L. E. Y. |
Revision of Campylobacter, Helicobacter, and Wolinella Taxonomy: Emendation of Generic Descriptions and Proposal of Arcobacter gen. nov. | International Journal of Systematic Bacteriology | 41(1), page(s): 88—103 | 10.1099/00207713-41-1-88 |
| Vandamme1994 | Chryseobacterium meningosepticum, Elizabethkingia meningoseptica, Chryseobacterium gleum, Chryseobacterium indologenes, Empedobacter brevis | 1994 |
Vandamme, P.; Bernardet, J.-F.; Segers, P.; Kersters, K.; Holmes, B. |
Notes: New Perspectives in the Classification of the Flavobacteria: Description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. | International Journal of Systematic Bacteriology | 44(4), page(s): 827—831 | 10.1099/00207713-44-4-827 | |
| Vandamme1994a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ornithobacterium rhinotracheale | 1994 |
Vandamme, P.; Segers, P.; Vancanneyt, M.; K. Van, Hove; Mutters, R.; Hommez, J.; Dewhirst, F.; Paster, B.; Kersters, K.; Falsen, E.; Devriese, L. A.; Bisgaard, M.; K.-H., Hinz.; Mannheim, W. |
Ornithobacterium rhinotracheale gen. nov., sp. nov., Isolated from the Avian Respiratory Tract. | International Journal of Systematic Bacteriology | 44(1), page(s): 24—37 | 10.1099/00207713-44-1-24 |
| Vandamme1995 | summary, general characteristics, utilisation, metabolites | Bordetella hinzii | 1995 |
Vandamme P, Hommez J, Vancanneyt M, Monsieurs M, Hoste B, Cookson B, Wirsing von König CH, Kersters K, Blackall PJ. |
Bordetella hinzii sp. nov., Isolated from Poultry and Humans. | International Journal of Systematic Bacteriology | 45(1), page(s): 37—45 | 10.1099/00207713-45-1-37 |
| Vandamme1995a | genetics, taxonomy | Bacteroides ureolyticus, Bacteroides gracilis, Campylobacter gracilis | 1995 |
Vandamme, P.; Daneshvar, M. I.; Dewhirst, F. E.; Paster, B. J.; Kersters, K.; Goossens, H.; C. W., Moss |
Chemotaxonomic Analyses of Bacteroides gracilis and Bacteroides ureolyticus and Reclassification of B. gracilis as Campylobacter gracilis comb. nov. | International Journal of Systematic Bacteriology | 45(1), page(s): 145—152 | 10.1099/00207713-45-1-145 |
| Vandamme1996 | Capnocytophaga | 1996 |
Vandamme, P.; Vancanneyt, M.; Belkum, A. Van.; Segers, P.; Quint, W. G. V.; Kersters, K.; Paster, B. J.; Dewhirst, F. E. |
Polyphasic Analysis of Strains of the Genus Capnocytophaga and Centers for Disease Control Group DF-3. | International Journal of Systematic Bacteriology | 46(3), page(s): 782—791 | 10.1099/00207713-46-3-782 | |
| Vandamme1999 | summary, general characteristics, enzymes, acid from carbohydrates | Streptococcus intestinalis, Streptococcus alactolyticus | 1999 |
Vandamme, P.; Devriese, L. A.; Haesebrouck, F.; Kersters, K. |
Streptococcus intestinalis Robinson et al. 1988 and Streptococcus alactolyticus Farrow et al. 1984 are phenotypically indistinguishable. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 737—741 | 10.1099/00207713-49-2-737 |
| Vandamme2010 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Campylobacter ureolyticus | 2010 |
Vandamme, P.; Debruyne, L.; Brandt, E. De; Falsen, E. |
Reclassification of Bacteroides ureolyticus as Campylobacter ureolyticus comb. nov., and emended description of the genus Campylobacter. | International Journal of Systematic and Evolutionary Microbiology | 60(9), page(s): 2016—2022 | 10.1099/ijs.0.017152-0 |
| Vandamme2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Achromobacter denitrificans, Achromobacter agilis, Achromobacter pestifer, Achromobacter kerstersii, Achromobacter deleyi | 2016 |
Vandamme, Peter A.; Peeters, Charlotte; Inganäs, Elisabeth; Cnockaert, Margo; Houf, Kurt; Spilker, Theodore; Moore, Edward R. B.; LiPuma, John J. |
Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(9), page(s): 3708—3717 | 10.1099/ijsem.0.001254 |
| Vaneechoutte2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Chryseobacterium hominis | 2007 |
Vaneechoutte, Mario; Kämpfer, Peter; Baere, Thierry De; Avesani, Véronique; Janssens, Michele; Wauters, Georges |
Chryseobacterium hominis sp. nov., to accommodate clinical isolates biochemically similar to CDC groups II-h and II-c. | International Journal of Systematic and Evolutionary Microbiology | 57(11), page(s): 2623—2628 | 10.1099/ijs.0.65158-0 |
| Vaneechoutte2019 | summary, general characteristics | Gardnerella vaginalis, Gardnerella leopoldii, Gardnerella piotii, Gardnerella swidsinskii | 2019 |
Vaneechoutte, Mario; Guschin, Alexander; Simaey, Leen Van; Gansemans, Yannick; Nieuwerburgh, Filip Van; Cools, Piet |
Emended description of Gardnerella vaginalis and description of Gardnerella leopoldii sp. nov., Gardnerella piotii sp. nov. and Gardnerella swidsinskii sp. nov., with delineation of 13 genomic species within the genus Gardnerella. | International Journal of Systematic and Evolutionary Microbiology | 69(3), page(s): 679—687 | 10.1099/ijsem.0.003200 |
| Varel1995 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Clostridium herbivorans | 1995 |
Varel, V. H.; Tanner, R. S.; Woese, C. R. |
Clostridium herbivorans sp. nov., a Cellulolytic Anaerobe from the Pig Intestine. | International Journal of Systematic Bacteriology | 45(3), page(s): 490—494 | 10.1099/00207713-45-3-490 |
| Vaux1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus asini | 1998 |
de Vaux, A.; Laguerre, G.; Divies, C.; Prévost, H. |
Enterococcus asini sp. nov. isolated from the caecum of donkeys (Equus asinus). | International Journal of Systematic Bacteriology | 48(2), page(s): 383—387 | 10.1099/00207713-48-2-383 |
| Vedder1934 | summary, general characteristics | Bacillus alcalophilus | 1934 |
Vedder, A. |
Bacillus alcalophilus n. sp. | Antonie van Leeuwenhoek | 1(1), page(s): 141—147 | 10.1007/bf02543931 |
| Vedros1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Neisseria macacae | 1983 |
Vedros, N. A.; C., Hoke.; P., Chun |
Neisseria macacae sp. nov., a new Neisseria Species Isolated from the Oropharynges of Rhesus Monkeys (Macaca mulatta). | International Journal of Systematic Bacteriology | 33(3), page(s): 515—520 | 10.1099/00207713-33-3-515 |
| Velasco1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ochrobactrum anthropi, Ochrobactrum intermedium | 1998 |
Velasco, J.; Romero, C.; Lopez-Goni, I.; Leiva, J.; Diaz, R.; Moriyon, I. |
Evaluation of the relatedness of Brucella spp. and Ochrobactrum anthropi and description of Ochrobactrum intermedium sp. nov., a new species with a closer relationship to Brucella spp. | International Journal of Systematic Bacteriology | 48(3), page(s): 759—768 | 10.1099/00207713-48-3-759 |
| Venkateswaran2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus nealsonii | 2003 |
Venkateswaran, Kasthuri; Kempf, Michael; Chen, Fei; Satomi, Masataka; Nicholson, Wayne; Kern, Roger |
Bacillus nealsonii sp. nov., isolated from a spacecraft-assembly facility, whose spores are gamma-radiation resistant. | International Journal of Systematic and Evolutionary Microbiology | 53(1), page(s): 165—172 | 10.1099/ijs.0.02311-0 |
| Verma2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bhargavaea beijingensis, Bhargavaea ginsengi, Bhargavaea cecembensis | 2012 |
Verma, Pankaj; Pandey, Prashant Kumar; Gupta, Arvind Kumar; Seong, Chi Nam; Park, Seong Chan; Choe, Han Na; Baik, Keun Sik; Patole, Milind Shivaji; Shouche, Yogesh Shreepad |
Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt/10), page(s): 2495—2504 | 10.1099/ijs.0.034850-0 |
| Verma2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus badius DSM 23T, Bacillus badius DSM 5610 | 2019 |
Verma, Ashish; Pal, Yash; Ojha, Anup Kumar; Kumari, Munesh; Khatri, Indu; Rameshkumar, N.; Schumann, Peter; Dastager, Syed G.; Mayilraj, Shanmugam; Subramanian, Srikrishna; Krishnamurthi, Srinivasan |
Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov. | Systematic and Applied Microbiology | 42(3), page(s): 360—372 | 10.1016/j.syapm.2019.03.003 |
| Veron1973 | summary, general characteristics, enzymes, metabolites, utilisation | Campylobacter fetus subsp. fetus | 1973 |
Veron, M.; Chatelain, R. |
Taxonomic Study of the Genus Campylobacter Sebald and Veron and Designation of the Neotype Strain for the Type Species, Campylobacter fetus (Smith and Taylor) Sebald and Veron. | International Journal of Systematic Bacteriology | 23(2), page(s): 122—134 | 10.1099/00207713-23-2-122 |
| Vlasova2016 | probiotics, health | Lactobacillus probiotics, Bifidobacterium probiotics | 2016 |
Vlasova, Anastasia N.; Kandasamy, Sukumar; Chattha, Kuldeep S.; Rajashekara, Gireesh; Saif, Linda J. |
Comparison of probiotic lactobacilli and bifidobacteria effects, immune responses and rotavirus vaccines and infection in different host species. | Veterinary Immunology and Immunopathology | 172, page(s): 72—84 | 10.1016/j.vetimm.2016.01.003 |
| Vuorio1999 | Mycobacterium murale | 1999 |
Vuorio, R.; Andersson, M. A.; Rainey, F. A.; Kroppenstedt, R. M.; Kämpfer, P.; Busse, H.-J.; Viljanen, M.; Salkinoja-Salonen, M. |
A new rapidly growing mycobacterial species, Mycobacterium murale sp. nov., isolated from the indoor walls of a children's day care centre. | International Journal of Systematic and Evolutionary Microbiology | 49(1), page(s): 25—35 | 10.1099/00207713-49-1-25 | |
| Wachsman1954 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Zymobacterium oroticum = Faecalicatena orotica | 1954 |
Wachsman, J. T.; Barker, H. A. |
Characterization of an Orotic Acid Fermenting Bacterium, Zymobacterium Oroticum, nov. gen., nov. spec. | Journal of bacteriology | 68(4), page(s): 400—404 | 10.1128/jb.68.4.400-404.1954 |
| Wade1999 | summary, general characteristics, enzymes, metabolites | Slackia exigua, Slackia heliotrinireducens | 1999 |
Wade, William G.; Downes, Julia; Dymock, David; Hiom, Sarah J.; Weightman, Andrew J.; Dewhirst, Floyd E.; Paster, Bruce J.; Tzellas, Nia; Coleman, Brittney |
The family Coriobacteriaceae: reclassification of Eubacterium exiguum (Poco etal. 1996) and Peptostreptococcus heliotrinreducens (Lanigan 1976) as Slackia exigua gen. nov., comb. nov. and Slackia heliotrinireducens gen. nov., comb. nov., and Eubacterium lentum (Prevot 1938) as Eggerthella lenta gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 595—600 | 10.1099/00207713-49-2-595 |
| Walterson2015 | health, educational | Pantoea genus, Pantoea agglomerans, Pantoea septica | 2015 |
Walterson, Alyssa M.; Stavrinides, John |
Pantoea: insights into a highly versatile and diverse genus within the Enterobacteriaceae. | FEMS Microbiology Reviews | 39(6), page(s): 968—984 | 10.1093/femsre/fuv027 |
| Walther1977 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium sphenoides | 1977 |
Walther, R.; Hippe, H.; Gottschalk, G. |
Citrate, a specific substrate for the isolation of Clostridium sphenoides. | Applied and Environmental Microbiology | 33(4), page(s): 955—962 | 10.1128/aem.33.4.955-962.1977 |
| Wang1996 | genetics, taxonomy | Fusobacterium prausnitzii | 1996 |
Wang, R.-F.; W.-W., C. A. O.; Cerniglia, C. E. |
Phylogenetic Analysis of Fusobacterium prausnitzii Based upon the 16S rRNA Gene Sequence and PCR Confirmation. | International Journal of Systematic Bacteriology | 46(1), page(s): 341—343 | 10.1099/00207713-46-1-341 |
| Warren2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Clostridium aldenense, Clostridium citroniae | 2006 |
Warren, Yumi A.; Tyrrell, Kerin L.; Citron, Diane M.; Goldstein, Ellie J. C. |
Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. Isolated from Human Clinical Infections. | Journal of Clinical Microbiology | 44(7), page(s): 2416—2422 | 10.1128/jcm.00116-06 |
| Watabe1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides veroralis | 1983 |
Watabe, J.; Benno, Y.; Mitsuoka, T. |
Taxonomic Study of Bacteroides oralis and Related Organisms and Proposal of Bacteroides veroralis sp. nov. | International Journal of Systematic Bacteriology | 33(1), page(s): 57—64 | 10.1099/00207713-33-1-57 |
| Watanabe2009 | summary, general characteristics, acid from carbohydrates, metabolites, fermented foods | Bifidobacterium mongoliense | 2009 |
Watanabe, K.; Makino, H.; Sasamoto, M.; Kudo, Y.; Fujimoto, J.; Demberel, S. |
Bifidobacterium mongoliense sp. nov., from airag, a traditional fermented mare's milk product from Mongolia. | International Journal of Systematic and Evolutionary Microbiology | 59(6), page(s): 1535—1540 | 10.1099/ijs.0.006247-0 |
| Watanabe2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides clarus, Bacteroides fluxus, Bacteroides oleiciplenus | 2010 |
Watanabe, Yohei; Nagai, Fumiko; Morotomi, Masami; Sakon, Hiroshi; Tanaka, Ryuichiro |
Bacteroides clarus sp. nov., Bacteroides fluxus sp. nov. and Bacteroides oleiciplenus sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 60(8), page(s): 1864—1869 | 10.1099/ijs.0.015107-0 |
| Watanabe2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Phascolarctobacterium succinatutens | 2011 |
Watanabe, Yohei; Nagai, Fumiko; Morotomi, Masami |
Characterization of Phascolarctobacterium succinatutens sp. nov., an Asaccharolytic, Succinate-Utilizing Bacterium Isolated from Human Feces. | Applied and Environmental Microbiology | 78(2), page(s): 511—518 | 10.1128/aem.06035-11 |
| Waters2019 | health, educational | Christensenellaceae | 2019 |
Waters, Jillian L.; Ley, Ruth E. |
The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health. | BMC Biology | 17(1), | 10.1186/s12915-019-0699-4 |
| Wattiau2000 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | Corynebacterium simulans | 2000 |
Wattiau, P.; Janssens, M.; Wauters, G. |
Corynebacterium simulans sp. nov., a non-lipophilic, fermentative Corynebacterium. | International Journal of Systematic and Evolutionary Microbiology | 50(1), page(s): 347—353 | 10.1099/00207713-50-1-347 |
| Watts1988 | summary, general characteristics, utilisation | Streptococcus alactolyticus | 1988 |
Watts, Jeffrey L. |
Characterization and Identification of Streptococci Isolated from Bovine Mammary Glands. | Journal of Dairy Science | 71(6), page(s): 1616—1624 | 10.3168/jds.s0022-0302(88)79725-8 |
| Wauters1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Yersinia mollaretii, Yersinia bercovieri | 1988 |
Wauters, G.; Janssens, M.; Steigerwalt, A. G.; Brenner, D. J. |
Yersinia mollaretii sp. nov. and Yersinia bercovieri sp. nov., Formerly Called Yersinia enterocolitica Biogroups 3A and 3B. | International Journal of Systematic Bacteriology | 38(4), page(s): 424—429 | 10.1099/00207713-38-4-424 |
| Wauters2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Arthrobacter oxydans, Arthrobacter luteolus, Arthrobacter albus | 2000 |
Wauters, G.; Charlier, J.; Janssens, M.; Delmée, M. |
Identification of Arthrobacter oxydans, Arthrobacter luteolus sp. nov., and Arthrobacter albus sp. nov., isolated from human clinical specimens. | Journal of Clinical Microbiology | 38, page(s): 2412—2415 | 10.1128/JCM.38.6.2412-2415.2000 |
| Wauters2001 | summary, general characteristics, enzymes, clinical sources | Brevibacterium paucivorans, Brevibacterium otitidis | 2001 |
Wauters, G.; Charlier, J.; Janssens, M.; Delmée, M. |
Brevibacterium paucivorans sp. nov., from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 51(5), page(s): 1703—1707 | 10.1099/00207713-51-5-1703 |
| Wauters2003 | summary, general characteristics, enzymes, metabolites, utilisation | Comamonas aquatica, Comamonas kerstersii, Comamonas terrigena | 2003 |
Wauters, Georges; Baere, Thierry De; Willems, Anne; Falsen, Enevold; Vaneechoutte, Mario |
Description of Comamonas aquatica comb. nov. and Comamonas kerstersii sp. nov. for two subgroups of Comamonas terrigena and emended description of Comamonas terrigena. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 859—862 | 10.1099/ijs.0.02450-0 |
| Wayne1966 | summary, general characteristics, enzymes, metabolites | Mycobacterium gastri, Mycobacterium avium, Mycobacterium terrae | 1966 |
Wayne, L. G. |
Classification and identification of mycobacteria. 3. Species within group 3. | The American review of respiratory disease | 93, page(s): 919—928 | 10.1164/arrd.1966.93.6.919 |
| Wayne1993 | genetics, taxonomy | Mycobacterium avium | 1993 |
Wayne, L. G.; Good, R. C.; Tsang, A.; Butler, R.; Dawson, D.; Groothuis, D.; Gross, W.; Hawkins, J.; Kilburn, J.; Kubin, M.; Schroder, K. H.; Silcox, V. A.; Smith, C.; Thorel, M.-F.; Woodley, C.; Yakrus, M. A. |
Serovar Determination and Molecular Taxonomic Correlation in Mycobacterium avium, Mycobacterium intracellulare, and Mycobacterium scrofulaceum: A Cooperative Study of the International Working Group on Mycobacterial Taxonomy. | International Journal of Systematic Bacteriology | 43(3), page(s): 482—489 | 10.1099/00207713-43-3-482 |
| Webster1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus sciuri, Staphylococcus vitulinus | 1994 |
Webster, J. A.; Bannerman, T. L.; Hubner, R. J.; Ballard, D. N.; E. M., Cole.; Bruce, J. L.; Fiedler, F.; Schubert, K.; Kloos, W. E. |
Identification of the Staphylococcus sciuri Species Group with Eco RI Fragments Containing rRNA Sequences and Description of Staphylococcus vitulus sp. nov. | International Journal of Systematic Bacteriology | 44(3), page(s): 454—460 | 10.1099/00207713-44-3-454 |
| Wegmann2013 | summary, general characteristics, enzymes, metabolites, utilisation | Ruminococcus bicirculans | 2013 |
Wegmann, Udo; Louis, Petra; Goesmann, Alexander; Henrissat, Bernard; Duncan, Sylvia H.; Flint, Harry J. |
Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans. | Environmental Microbiology | 16(9), page(s): 2879—2890 | 10.1111/1462-2920.12217 |
| Weiss1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus sharpeae, Lactobacillus agilis | 1981 |
Weiss, Norbert; Schillinger, Ulrich; Laternser, Monica; Kandler, Otto |
Lactobacillus sharpeae sp. nov. and Lactobacillus agilis sp. nov., two new species of homofermentative, meso-diaminopimelic acid-containing lactobacilli isolated from sewage. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene | 2(3), page(s): 242—253 | 10.1016/s0721-9571(81)80005-1 |
| Weldin1926 | health, typhoid | Shigella flexneri | 1926 |
Weldin, John C. |
The colon-typhoid group of bacteria and related forms: Relationships and classification. | Retrospective Theses and Dissertations | page(s): 1-136 | 10.31274/rtd-180813-7381 |
| Wen1999 | summary, general characteristics, enzymes, metabolites, utilisation | Delftia acidovorans | 1999 |
Wen, Aimin; Fegan, Mark; Hayward, Chris; Chakraborty, Sukumar; Sly, Lindsay I. |
Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(2), page(s): 567—576 | 10.1099/00207713-49-2-567 |
| Weon2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Skermanella aerolata | 2007 |
Weon, Hang-Yeon; Kim, Byung-Yong; Hong, Seung-Beom; Joa, Jae-Ho; Nam, Sang-Sik; Lee, Ki Hwan; Kwon, Soon-Wo |
Skermanella aerolata sp. nov., isolated from air, and emended description of the genus Skermanella. | International Journal of Systematic and Evolutionary Microbiology | 57(7), page(s): 1539—1542 | 10.1099/ijs.0.64676-0 |
| Weon2008 | summary, general characteristics, enzymes, metabolites, utilisation | Rudanella lutea | 2008 |
Weon, H.-Y.; Noh, H.-J.; Son, J.-A.; Jang, H. B.; Kim, B.-Y.; Kwon, S.-W.; Stackebrandt, E. |
Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea. | International Journal of Systematic and Evolutionary Microbiology | 58(2), page(s): 474—478 | 10.1099/ijs.0.65358-0 |
| Westbrook2000 | clinical sources | Klebsiella planticola | 2000 |
Westbrook, G. L.; O'Hara, C. M.; Roman, S. B.; Miller, J. M. |
Incidence and identification of Klebsiella planticola in clinical isolates with emphasis on newborns. | Journal of Clinical Microbiology | 38, page(s): 1495—1497 | 10.1128/JCM.38.4.1495-1497.2000 |
| Wexler1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Sutterella wadsworthensis | 1996 |
Wexler, H. M.; Reeves, D.; Summanen, P. H.; Molitoris, E.; Mcteague, M.; Duncan, J.; Wilson, K. H.; Finegold, S. M. |
Sutterella wadsworthensis gen. nov., sp. nov., Bile-Resistant Microaerophilic Campylobacter gracilis-Like Clinical Isolates. | International Journal of Systematic Bacteriology | 46(1), page(s): 252—258 | 10.1099/00207713-46-1-252 |
| Wexler2007 | health, educational | Bacteroides thetaiotaomicron, Bacteroides fragilis, Phocaeicola coprocola, Bacteroides caccae, Bacteroides eggerthii, Bacteroides finegoldii, Bacteroides fragilis, Bacteroides helcogenes, Bacteroides intestinalis, Phocaeicola massiliensis, Bacteroides nordii, Bacteroides ovatus, Bacteroides vulgatus, Phocaeicola plebeius, Bacteroides uniformis, Bacteroides salyersiae, Bacteroides pyogenes, Parabacteroides goldsteinii, Phocaeicola dorei, Parabacteroides johnsonii, Parabacteroides merdae, Parabacteroides distasonis | 2007 |
Wexler, Hannah M. |
Bacteroides : the Good, the Bad, and the Nitty-Gritty. | Clinical Microbiology Reviews | 20(4), page(s): 593—621 | 10.1128/cmr.00008-07 |
| Whiley1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Streptococcus vestibularis | 1988 |
Whiley, R. A.; Hardie, J. M. |
Streptococcus vestibularis sp. nov. from the Human Oral Cavity. | International Journal of Systematic Bacteriology | 38(4), page(s): 335—339 | 10.1099/00207713-38-4-335 |
| Whiley1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Streptococcus parasanguinis | 1990 |
Whiley, Robert A.; Fraser, Hazel Y.; Douglas, C. W. I.; Hardie, Jeremy M.; Williams, Annette M.; Collins, Matthew D. |
Streptococcus parasanguis sp. nov., an atypical viridans Streptococcus from human clinical specimens. | FEMS Microbiology Letters | 68(1-2), page(s): 115—121 | 10.1111/j.1574-6968.1990.tb04133.x |
| Whiley1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus constellatus, Streptococcus intermedius, Streptococcus anginosus | 1991 |
Whiley, R. A.; Beighton, D. |
Emended Descriptions and Recognition of Streptococcus constellatus, Streptococcus intermedius, and Streptococcus anginosus as Distinct Species. | International Journal of Systematic Bacteriology | 41(1), page(s): 1—5 | 10.1099/00207713-41-1-1 |
| Whitehead2004 | summary, general characteristics, enzymes, metabolites, utilisation | Hespellia stercorisuis, Hespellia porcina | 2004 |
Whitehead, Terence R.; Cotta, Michael A.; Collins, Matthew D.; Lawson, Paul A. |
Hespellia stercorisuis gen. nov., sp. nov. and Hespellia porcina sp. nov., isolated from swine manure storage pits. | International Journal of Systematic and Evolutionary Microbiology | 54(1), page(s): 241—245 | 10.1099/ijs.0.02719-0 |
| Whitford2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Lachnobacterium bovis | 2001 |
Whitford, M. F.; Yanke, L. J.; Forster, R. J.; Teather, R. M. |
Lachnobacterium bovis gen. nov., sp. nov., a novel bacterium isolated from the rumen and faeces of cattle. | International Journal of Systematic and Evolutionary Microbiology | 51(6), page(s): 1977—1981 | 10.1099/00207713-51-6-1977 |
| vanderWielen2002 | summary, general characteristics, metabolites, utilisation | Clostridium lactatifermentans | 2002 |
van der Wielen, P. W. J. J., Gerben M. L. L. Rovers, Judith M. A. Scheepens and Steef Biesterveld |
Clostridium lactatifermentans sp. nov., a lactate-fermenting anaerobe isolated from the caeca of a chicken. | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 921—925 | 10.1099/00207713-52-3-921 |
| Wieser2002 | summary, general characteristics, enzymes, metabolites, utilisation | Micrococcus luteus, Micrococcus lylae | 2002 |
Wieser, Monika; Denner, Ewald B. M.; Kämpfer, Peter; Schumann, Peter; Tindall, Brian; Steiner, Ulrike; Vybiral, Dietmar; Lubitz, Werner; Maszenan, A. M.; Patel, B. K. C.; Seviour, Robert J.; Radax, Christian; Busse, Hans-Jürgen |
Emended descriptions of the genus Micrococcus, Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al. 1974). | International Journal of Systematic and Evolutionary Microbiology | 52(2), page(s): 629—637 | 10.1099/00207713-52-2-629 |
| Wilkinson1977 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Listeria grayi, Listeria monocytogenes | 1977 |
Wilkinson, B. J.; Jones, D. |
A Numerical Taxonomic Survey of Listeria and Related Bacteria. | Journal of General Microbiology | 98(2), page(s): 399—421 | 10.1099/00221287-98-2-399 |
| Willcox2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Streptococcus australis | 2001 |
Willcox, M. D.; Zhu, H.; Knox, K. W. |
Streptococcus australis sp. nov., a novel oral streptococcus. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1277—1281 | 10.1099/00207713-51-4-1277 |
| Willems1990 | summary, general characteristics, utilisation, metabolites, clinical sources | Acidovorax facilis, Acidovorax delafieldii, Acidovorax temperans | 1990 |
Willems A, Falsen E, Pot B, Jantzen E, Hoste B, Vandamme P, Gillis M, Kersters K, De Ley J. |
Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov. | International Journal of Systematic Bacteriology | 40(4), page(s): 384—398 | 10.1099/00207713-40-4-384 |
| Willems1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Prevotella dentalis, Prevotella seregens | 1995 |
Willems, A.; Collins, M. D. |
Notes: 16S rRNA Gene Similarities Indicate that Hallella seregens (Moore and Moore) and Mitsuokella dentalis (Haapasalo et al.) Are Genealogically Highly Related and Are Members of the Genus Prevotella: Emended Description of the Genus Prevotella (Shah and Collins) and Description of Prevotella dentalis comb. nov. | International Journal of Systematic Bacteriology | 45(4), page(s): 832—836 | 10.1099/00207713-45-4-832 |
| Willems1995a | genetics, taxonomy | Ruminococcus flavefaciens, Streptococcus hansenii, Peptostreptococcus productus | 1995 |
Willems, A.; Collins, M. D. |
Notes: Phylogenetic Analysis of Ruminococcus flavefaciens, the Type Species of the Genus Ruminococcus, Does Not Support the Reclassification of Streptococcus hansenii and Peptostreptococcus productus as Ruminococci. | International Journal of Systematic Bacteriology | 45(3), page(s): 572—575 | 10.1099/00207713-45-3-572 |
| Willems1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Pseudoramibacter alactolyticus | 1996 |
Willems, A.; Collins, M. D. |
Phylogenetic Relationships of the Genera Acetobacterium and Eubacterium Sensu Stricto and Reclassification of Eubacterium alactolyticum as Pseudoramibacter alactolyticus gen. nov., comb. nov. | International Journal of Systematic Bacteriology | 46(4), page(s): 1083—1087 | 10.1099/00207713-46-4-1083 |
| Willems1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Holdemania filiformis | 1997 |
Willems, A.; Moore, W. E. C.; Weiss, N.; Collins, M. D. |
Phenotypic and Phylogenetic Characterization of Some Eubacterium-Like Isolates Containing a Novel Type B Wall Murein from Human Feces: Description of Holdemania filiformis gen. nov., sp. nov. | International Journal of Systematic Bacteriology | 47(4), page(s): 1201—1204 | 10.1099/00207713-47-4-1201 |
| Williams1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus parauberis | 1990 |
Williams, Annette M.; Collins, M. D. |
Molecular taxonomic studies on Streptococcus uberis types I and II. Description of Streptococcus parauberis sp. nov. | Journal of Applied Bacteriology | 68(5), page(s): 485—490 | 10.1111/j.1365-2672.1990.tb02900.x |
| Willis1972 | summary | Clostridium septicum, Clostridium chauvoei | 1972 |
Willis, A. T.; Williams, K. |
Prevention Of Swarming Of Clostridium Septicum. | Journal of Medical Microbiology | 5(4), page(s): 493—496 | 10.1099/00222615-5-4-493 |
| Windsor1976 | summary | Ureaplasma urealyticum | 1976 |
Windsor, G. D.; Trigwell, J. A. |
Prolonged survival of Ureaplasma urealyticum in liquid culture. | Journal of Medical Microbiology | 9(1), page(s): 101—103 | 10.1099/00222615-9-1-101 |
| Winter1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium orbiscindens = Flavonifractor plautii | 1991 |
Winter, J.; Popoff, M. R.; Grimont, P.; Bokkenheuser, V. D. |
Clostridium orbiscindens sp. nov., a Human Intestinal Bacterium Capable of Cleaving the Flavonoid C-Ring. | International Journal of Systematic Bacteriology | 41(3), page(s): 355—357 | 10.1099/00207713-41-3-355 |
| DeWitte2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Fusobacterium gastrosuis, Fusobacterium mortiferum | 2017 |
Witte, C. De; Flahou, B.; Ducatelle, R.; Smet, A.; Bruyne, E. De; Cnockaert, M.; Taminiau, B.; Daube, G.; Vandamme, P.; Haesebrouck, F. |
Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs. | Systematic and Applied Microbiology | 40(1), page(s): 42—50 | 10.1016/j.syapm.2016.10.001 |
| Wolf2002 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Stenotrophomonas rhizophila | 2002 |
Wolf, A. |
Stenotrophomonas rhizophila sp. nov., a novel plant-associated bacterium with antifungal properties. | International Journal of Systematic and Evolutionary Microbiology | 52(6), page(s): 1937—1944 | 10.1099/ijs.0.02135-0 |
| Wolin2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bryantella formatexigens | 2003 |
Wolin, Meyer J.; Miller, Terry L.; Collins, Matthew D.; Lawson, Paul A. |
Formate-Dependent Growth and Homoacetogenic Fermentation by a Bacterium from Human Feces: Description of Bryantella formatexigens gen. nov., sp. nov. | Applied and Environmental Microbiology | 69(10), page(s): 6321—6326 | 10.1128/aem.69.10.6321-6326.2003 |
| Wolin2008 | summary, general characteristics | Marvinbryantia formatexigens | 2008 |
Wolin, M. J.; Miller, T. L.; Lawson, P. A. |
Proposal to replace the illegitimate genus name Bryantella Wolin et al. 2004VP with the genus name Marvinbryantia gen. nov. and to replace the illegitimate combination Bryantella formatexigens Wolin et al. 2004VP with Marvinbryantia formatexigens comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 58(3), page(s): 742—744 | 10.1099/ijs.0.65850-0 |
| Workneh2016 | summary, general characteristics, enzymes, antibiotics, blood infection | Anaerostipes caccae | 2016 |
Workneh, Meklit; Wang, Frances; Romagnoli, Mark; Simner, Patricia J.; Carroll, Karen |
Bypass graft infection and bacteremia caused by Anaerostipes caccae: First report of human infection caused by a recently described gut anaerobe. | Anaerobe | 42, page(s): 98—100 | 10.1016/j.anaerobe.2016.09.005 |
| Wu1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Prevotella denticola, Prevotella loescheii, Prevotella veroralis, Prevotella melaninogenica | 1992 |
Wu, C.-C.; Johnson, J. L.; Moore, W. E. C.; Moore, L. V. H. |
Emended Descriptions of Prevotella denticola, Prevotella loescheii, Prevotella veroralis, and Prevotella melaninogenica. | International Journal of Systematic Bacteriology | 42(4), page(s): 536—541 | 10.1099/00207713-42-4-536 |
| Wuest1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Actinomyces radingae, Actinomyces turicensis | 1995 |
Wüst, J.; Stubbs, S.; Weiss, N.; Funke, G.; Collins, M. D. |
Assignment of Actinomyces pyogenes-like (CDC coryneform group E) bacteria to the genus Actinomyces as Actinomyces radingae sp. nov. and Actinomyces turicensis sp. nov. | Letters in Applied Microbiology | 20(2), page(s): 76—81 | 10.1111/j.1472-765x.1995.tb01290.x |
| Wurdemann2009 | health, Crohn's disease, summary, general characteristics, enzymes, metabolites, utilisation | Gordonibacter pamelaeae, Paraeggerthella hongkongensis | 2009 |
Wurdemann, D.; Tindall, B. J.; Pukall, R.; Lunsdorf, H.; Strompl, C.; Namuth, T.; Nahrstedt, H.; Wos-Oxley, M.; Ott, S.; Schreiber, S.; Timmis, K. N.; Oxley, A. P. A. |
Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(6), page(s): 1405—1415 | 10.1099/ijs.0.005900-0 |
| Xie2005 | summary, general characteristics, enzymes, metabolites, utilisation | Azohydromonas lata, Azohydromonas australica, Pelomonas saccharophila | 2005 |
Xie, Cheng-Hui; Yokota, Akira |
Reclassification of Alcaligenes latus strains IAM 12599T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. | International Journal of Systematic and Evolutionary Microbiology | 55(6), page(s): 2419—2425 | 10.1099/ijs.0.63733-0 |
| Xin2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ancylobacter polymorphus, Ancylobacter vacuolatus | 2006 |
Xin, Yu Hua; Zhou, Yu Guang; Chen, Wen Xin |
Ancylobacter polymorphus sp. nov. and Ancylobacter vacuolatus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(6), page(s): 1185—1188 | 10.1099/ijs.0.64118-0 |
| Xing2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food waste | Ethanoligenens harbinense, Ethanoligenens harbinense-like bacteria | 2006 |
Xing, Defeng; Ren, Nanqi; Li, Qiubo; Lin, Ming; Wang, Aijie; Zhao, Lihua |
Ethanoligenens harbinense gen. nov., sp. nov., isolated from molasses wastewater. | International Journal of Systematic and Evolutionary Microbiology | 56(4), page(s): 755—760 | 10.1099/ijs.0.63926-0 |
| Yabuuchi1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Sphingobacterium multivorum, Sphingobacterium spiritivorum, Flavobacterium indologenes, Sphingobacterium mizutaii | 1983 |
Yabuuchi, E.; Kaneko, T.; I., Yano; C. W., Moss; Miyoshi, N. |
Sphingobacterium gen. nov., Sphingobacterium spiritivorum comb. nov., Sphingobacterium multivorum comb. nov., Sphingobacterium mizutae sp. nov., and Flavobacterium indologenes sp. nov.: Glucose-Nonfermenting Gram-Negative Rods in CDC Groups IIK-2 and IIb. | International Journal of Systematic Bacteriology | 33(3), page(s): 580—598 | 10.1099/00207713-33-3-580 |
| Yabuuchi1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Sphingomonas paucimobilis, Sphingomonas parapaucimobilis, Sphingomonas yanoikuyae, Sphingomonas adhaesiva, Sphingomonas capsulata, Novosphingobium capsulatum | 1990 |
Yabuuchi, Eiko; Yano, Ikuya; Oyaizu, Hiroshi; Hashimoto, Yasuhiro; Ezaki, Takayuki; Yamamoto, Hiroyuki |
Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb, nov., and Two Genospecies of the Genus Sphingomonas. | Microbiology and Immunology | 34(2), page(s): 99—119 | 10.1111/j.1348-0421.1990.tb00996.x |
| Yabuuchi1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia cepacia, Burkholderia pickettii, Burkholderia gladioli, Burkholderia pseudomallei | 1992 |
Yabuuchi, Eiko; Kosako, Yoshimasa; Oyaizu, Hiroshi; Yano, Ikuya; Hotta, Hisako; Hashimoto, Yasuhiro; Ezaki, Takayuki; Arakawa, Michio |
Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. | Microbiology and Immunology | 36(12), page(s): 1251—1275 | 10.1111/j.1348-0421.1992.tb02129.x |
| Yabuuchi1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia cepacia | 1995 |
Yabuuchi, Eiko; Kosako, Yoshimasa; Yano, Ikuya; Hotta, Hisako; Nishiuchi, Yukiko |
Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia gen. nov. | Microbiology and Immunology | 39(11), page(s): 897—904 | 10.1111/j.1348-0421.1995.tb03275.x |
| Yamamoto1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, oral cavity | Capnocytophaga haemolytica, Capnocytophaga granulosa | 1994 |
Yamamoto, T.; Kajiura, S.; Hirai, Y.; Watanabe, T. |
Capnocytophaga haemolytica sp. nov. and Capnocytophaga granulosa sp. nov., from Human Dental Plaque. | International Journal of Systematic Bacteriology | 44(2), page(s): 324—329 | 10.1099/00207713-44-2-324 |
| Yassin2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Corynebacterium aurimucosum, Corynebacterium minutissimum | 2002 |
Yassin, A. F.; Steiner, U.; Ludwig, W. |
Corynebacterium aurimucosum sp. nov. and emended description of Corynebacterium minutissimum Collins and Jones (1983). | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 1001—1005 | 10.1099/ijs.0.02045-0 |
| Yassin2002a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Corynebacterium appendicis | 2002 |
Yassin, A. F. |
Corynebacterium appendicis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(4), page(s): 1165—1169 | 10.1099/ijs.0.02141-0 |
| Yassin2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Corynebacterium glaucum | 2003 |
Yassin, A. F.; Kroppenstedt, R. M.; Ludwig, W. |
Corynebacterium glaucum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 705—709 | 10.1099/ijs.0.02394-0 |
| Yassin2006 | summary, general characteristics, enzymes, utilisation, perianal infection | Dietzia cinnamea | 2006 |
Yassin, A. F.; Hupfer, H.; Schaal, K. P. |
Dietzia cinnamea sp. nov., a novel species isolated from a perianal swab of a patient with a bone marrow transplant. | International Journal of Systematic and Evolutionary Microbiology | 56(3), page(s): 641—645 | 10.1099/ijs.0.63863-0 |
| Yassin2007 | summary, general characteristics, enzymes, acid from carbohydrates, blood infection | Corynebacterium ureicelerivorans | 2007 |
Yassin, A. F. |
Corynebacterium ureicelerivorans sp. nov., a lipophilic bacterium isolated from blood culture. | International Journal of Systematic and Evolutionary Microbiology | 57(6), page(s): 1200—1203 | 10.1099/ijs.0.64832-0 |
| Yassin2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Trueperella genus, Trueperella pyogenes, Trueperella bernardiae | 2011 |
Yassin, A. F.; Hupfer, H.; Siering, C.; Schumann, P. |
Comparative chemotaxonomic and phylogenetic studies on the genus Arcanobacterium Collins et al. 1982 emend. Lehnen et al. 2006: proposal for Trueperella gen. nov. and emended description of the genus Arcanobacterium. | International Journal of Systematic and Evolutionary Microbiology | 61(6), page(s): 1265—1274 | 10.1099/ijs.0.020032-0 |
| Yehya2013 | antibiotics, antimicrobial | Bacteroides fragilis, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides eggerthii | 2013 |
Yehya, Mariam; Hamze, Monzer; Mallat, Hassan; Dabbousi, Fouad |
Prevalence and antibiotic susceptibility of Bacteroides fragilis group isolated from stool samples in North Lebanon. | Brazilian Journal of Microbiology | 44(3), page(s): 807—812 | 10.1590/S1517-83822013000300022 |
| Yimagou2020 | summary, general characteristics, enzymes, acid from carbohydrates | Parabacteroides bouchesdurhonensis | 2020 |
Yimagou, E. K.; Dione, N.; Ngom, I. I.; Tall, M. L.; Baudoin, J. P.; Raoult, D.; Khalil, J. Y. Bou |
Parabacteroides bouchesdurhonensis sp. nov., a new bacterium isolated from the stool of a healthy adult. | New Microbes and New Infections | 34, page(s): 100639 | 10.1016/j.nmni.2019.100639 |
| Yokota1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium dextranolyticum, Microbacterium aurum | 1993 |
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Proposal of Two New Species in the Genus Microbacterium: Microbacterium dextranolyticum sp. nov. and Microbacterium aurum sp. nov. | International Journal of Systematic Bacteriology | 43(3), page(s): 549—554 | 10.1099/00207713-43-3-549 |
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Reclassification of Nocardioides simplex ATCC 13260, ATCC 19565, and ATCC 19566 as Rhodococcus erythropolis. | International Journal of Systematic Bacteriology | 47(3), page(s): 904—907 | 10.1099/00207713-47-3-904 |
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Janibacter terrae sp. nov., a bacterium isolated from soil around a wastewater treatment plant. | International Journal of Systematic and Evolutionary Microbiology | 50(5), page(s): 1821—1827 | 10.1099/00207713-50-5-1821 |
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Brevundimonas terrae sp. nov., isolated from an alkaline soil in Korea. | International Journal of Systematic and Evolutionary Microbiology | 56(12), page(s): 2915—2919 | 10.1099/ijs.0.64253-0 |
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Yonghaparkia alkaliphila gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an alkaline soil. | International Journal of Systematic and Evolutionary Microbiology | 56(10), page(s): 2415—2420 | 10.1099/ijs.0.64258-0 |
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Levinea, a New Genus of the Family Enterobacteriaceae. | International Journal of Systematic Bacteriology | 21(1), page(s): 58—63 | 10.1099/00207713-21-1-58 |
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Bacteroides faecalis sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 69(12), page(s): 3824—3829 | 10.1099/ijsem.0.003690 |
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Yuen, Kwok-Yung; Woo, Patrick C. Y.; Teng, Jade L. L.; Leung, Kit-Wah; Wong, Michelle K. M.; Lau, Susanna K. P. |
Laribacter hongkongensis gen. nov., sp. nov., a Novel Gram-Negative Bacterium Isolated from a Cirrhotic Patient with Bacteremia and Empyema. | Journal of Clinical Microbiology | 39(12), page(s): 4227—4232 | 10.1128/jcm.39.12.4227-4232.2001 |
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Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawater. | International Journal of Systematic and Evolutionary Microbiology | 51(2), page(s): 349—355 | 10.1099/00207713-51-2-349 |
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Flavobacterium oncorhynchi sp. nov., a new species isolated from rainbow trout (Oncorhynchus mykiss). | Systematic and Applied Microbiology | 35(2), page(s): 86—91 | 10.1016/j.syapm.2011.11.007 |
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Lactobacillus pentosus (Fred, Peterson, and Anderson) sp. nov., nom. rev. | International Journal of Systematic Bacteriology | 37(4), page(s): 339—341 | 10.1099/00207713-37-4-339 |
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Anaerofilum pentosovorans gen. nov., sp. nov., and Anaerofilum agile sp. nov., Two New, Strictly Anaerobic, Mesophilic, Acidogenic Bacteria from Anaerobic Bioreactors. | International Journal of Systematic Bacteriology | 46(4), page(s): 871—875 | 10.1099/00207713-46-4-871 |
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Selenomonas bovis sp. nov., isolated from yak rumen contents. | International Journal of Systematic and Evolutionary Microbiology | 59(8), page(s): 2080—2083 | 10.1099/ijs.0.007641-0 |
| Zhang2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Agrococcus terreus, Micrococcus terreus | 2010 |
Zhang, Jia-Yue; Liu, Xing-Yu; Liu, Shuang-Jiang |
Agrococcus terreus sp. nov. and Micrococcus terreus sp. nov., isolated from forest soil. | International Journal of Systematic and Evolutionary Microbiology | 60(8), page(s): 1897—1903 | 10.1099/ijs.0.013235-0 |
| Zhang2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Moheibacter sediminis, Empedobacter brevis, Wautersiella falsenii, Weeksella virosa | 2014 |
Zhang, Ren-Gang; Tan, Xu; Zhao, Xing-Min; Deng, Jian; Lv, Jie |
Moheibacter sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from sediment, and emended descriptions of Empedobacter brevis, Wautersiella falsenii and Weeksella virosa. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt/5), page(s): 1481—1487 | 10.1099/ijs.0.060178-0 |
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Zhang, Xue; Tu, Bo; Dai, Li-rong; Lawson, Paul A.; Zheng, Zhen-zhen; Liu, Lai-Yan; Deng, Yu; Zhang, Hui; Cheng, Lei |
Petroclostridium xylanilyticum gen. nov., sp. nov., a xylan-degrading bacterium isolated from an oilfield, and reclassification of clostridial cluster III members into four novel genera in a new Hungateiclostridiaceae fam. nov. | International Journal of Systematic and Evolutionary Microbiology | 68(10), page(s): 3197—3211 | 10.1099/ijsem.0.002966 |
| Zhilina1992 | summary, general characteristics, metabolites, utilisation, ecology | Halanaerobium saccharolyticum | 1992 |
Zhilina, T. N.; Zavarzin, G. A.; Bulygina, E. S.; Kevbrin, V. V.; Osipov, G. A.; Chumakov, K. M. |
Ecology, Physiology and Taxonomy Studies on a New Taxon of Haloanaerobiaceae, Haloincola saccharolytica gen. nov., sp. nov. | Systematic and Applied Microbiology | 15(2), page(s): 275—284 | 10.1016/s0723-2020(11)80101-3 |
| Zoetendal2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Victivallis vadensis | 2003 |
Zoetendal, Erwin G.; Plugge, Caroline M.; Akkermans, Antoon D. L.; de Vos, Willem M. |
Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 53(1), page(s): 211—215 | 10.1099/ijs.0.02362-0 |
| Zuo2016 | genetics, taxonomy | Eubacterium rectale | 2016 |
Zuo, Guanghong; Hao, Bailin |
Whole-genome-based phylogeny supports the objections against the reclassification of Eubacterium rectale to Agathobacter rectalis. | International Journal of Systematic and Evolutionary Microbiology | 66(6), page(s): 2451—2451 | 10.1099/ijsem.0.001047 |
| Zhang2014a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, water source | Chishuiella changwenlii, Empedobacter falsenii | 2014 |
Zhang, Ren-Gang; Tan, Xu; Liang, Ye; Meng, Tian-Yi; Liang, Hui-Zhen; Lv, Jie |
Description of Chishuiella changwenlii gen. nov., sp. nov., isolated from freshwater, and transfer of Wautersiella falsenii to the genus Empedobacter as Empedobacter falsenii comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(pt/8), page(s): 2723—2728 | 10.1099/ijs.0.063115-0 |
| Lo2021 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Limosilactobacillus caccae | 2021 |
Cheikh Ibrahima Lo, Niokhor Dione, Aminata Mbaye, Patricia Fernández-Mellado Gómez, Issa Isaac Ngom, Camille Valles, Stéphane Alibar, Jean-Christophe Lagier, Florence Fenollar, Pierre-Edouard Fournier, Didier Raoult, Seydina M Diene |
Limosilactobacillus caccae sp. nov., a new bacterial species isolated from the human gut microbiota | FEMS Microbiology Letters | 368(18), | 10.1093/femsle/fnab128 |
| Orsi2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, genetics, taxonomy | Listeria monocytogenes, Listeria seeligeri, Listeria ivanovii, Listeria welshimeri, Listeria innocua, Listeria grayi | 2016 |
Orsi, R. H., and Martin Wiedmann |
Characteristics and distribution of Listeria spp., including Listeria species newly described since 2009 | 10.1007/s00253-016-7552-2 | ||
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Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes. | Journal of Bacteriology | 193(24), page(s): 7008-7009 | 10.1128/JB.06301-11 |
| Ng1977 | summary, acid from carbohydrates, cellulose, metabolites, utilise, general characteristics | Clostridium thermocellum | 1977 |
Ng TK, Weimer TK, Zeikus JG. |
Cellulolytic and Physiological Properties of Clostridium thermocellum | Archives of Microbiology | 114(1), page(s): 1-7 | 10.1007/BF00429622 |
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Ludwig, W., Schleifer, K.-H., and Whitman, W.B. |
Revised road map to the phylum Firmicutes. | In: Bergey's Manual of Systematic Bacteriology, 2nd ed. (The Firmicutes) | 3, page(s): 1-13 | 10.1002/9781118960608.bm00025 | |
| Frederiksen1990 | summary, general characteristics | Citrobacter koseri, Citrobacter diversus, Levinea malonatica | 1990 |
Frederiksen, W. |
Correct Names of the Species Citrobacter koseri, Levinea malonatica, and Citrobacter diversus | International Journal of Systematic Microbiology | 40(1), page(s): 107-108 | 10.1099/00207713-40-1-107 |
| Tindall2019 | name change | 2019 |
Tindall, B. J. |
The names Hungateiclostridium Zhang et al. 2018, Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018, Hungateiclostridium cellulolyticum (Patel et al. 1980) Zhang et al. 2018, Hungateiclostridium aldrichii (Yang et al. 1990) Zhang et al. 2018, Hungateiclostridium alkalicellulosi (Zhilina et al. 2006) Zhang et al. 2018, Hungateiclostridium clariflavum (Shiratori et al. 2009) Zhang et al. 2018, Hungateiclostridium straminisolvens (Kato et al. 2004) Zhang et al. 2018 and Hungateiclostridium saccincola (Koeck et al. 2016) Zhang et al. 2018 contravene Rule 51b of the International Code of Nomenclature of Prokaryotes and require replacement names in the genus Acetivibrio Patel et al. 1980 | International Journal of Systematic and Evolutionary Microbiology | 69, page(s): 3927–3932 | 10.1099/ijsem.0.003685 | |
| Stadtman1957 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium sticklandii | 1957 |
Stadtman, T. C., and McClung, L. S. |
Clostridium sticklandii nov. spec. | Journal of bacteriology | 73(2), page(s): 218–219 | 10.1128/jb.73.2.218-219.1957 |
| Ruger1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Alcaligenes denitrificans | 1983 |
Ruger, H. -J. and Tan, T. L. |
Separation of Alcaligenes denitrificans sp. nov., nom. rev. from Alcaligenes faecalis on the Basis of DNA Base Composition, DNA Homology, and Nitrate Reduction | International Journal of Systematic Bacteriology | 33(1), page(s): 85-89 | 10.1099/00207713-33-1-85 |
| Reverdy1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Achromobacter xylosoxidans | 1984 |
Reverdy ME, Freney J, Fleurette J, Coulet M, Surgot M, Marmet D, Ploton C. |
Nosocomial colonization and infection by Achromobacter xylosoxidans. | Journal of Clinical Microbiology | 19(2), page(s): 140-143 | 10.1128/jcm.19.2.140-143 |
| Galan2000 | summary, antibiotics | Acidaminococcus fermentans | 2000 |
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ACI-1 from Acidaminococcus fermentans: characterization of the first beta-lactamase in Anaerobic cocci. | Antimicrobial Agents Chemotheropy | 44(11), page(s): 3144-3149 | 10.1128/AAC.44.11.3144-3149.2000 |
| Deptula2018 | fermented food | Acidipropionibacterium virtanenii | 2018 |
Deptula, Paulina, Olli-Pekka Smolander, Pia Laine, Richard J Roberts, Minnamari Edelmann, Petri Peltola, Vieno Piironen, Lars Paulin, Erna Storgårds, Kirsi Savijoki, Arja Laitila, Petri Auvinen, Pekka Varmanen |
Acidipropionibacterium virtanenii sp. nov., isolated from malted barley | International Journal of Systematic and Evolutionary Microbiology | 68(10), page(s): 3175– 3183 | 10.1099/ijsem.0.002965 |
| Ohtsubo2012 | genetics, taxonomy | Acidovorax sp. Strain KKS102 | 2012 |
Ohtsubo, Yoshiyuki; Fumito Maruyama, Hisayuki Mitsui, Yuji Nagata, and Masataka Tsuda |
Complete Genome Sequence of Acidovorax sp. Strain KKS102, a Polychlorinated-Biphenyl Degrader | Journal of Bacteriology | 194(24), | 10.1128/JB.01848-12 |
| Kimbara1988 | summary, general characteristics | Pseudomonas sp. strain KKS102 | 1988 |
Kimbara, Kazuhide; Toshiyuki Hashimoto, Masao Fukuda, Takao Koana, Masamichi Takagi, Michio Oishi, Keiji Yano, |
Isolation and Characterization of a Mixed Culture That Degrades Polychlorinated Biphenyls. | Agricultural and Biological Chemistry | 52(11), page(s): 2885–2891 | 10.1080/00021369.1988.10869161 |
| Rooney2016 | utilisation | Acinetobacter lactucae | 2016 |
Rooney AP, Dunlap CA, Flor-Weiler LB. |
Acinetobacter lactucae sp. nov., isolated from iceberg lettuce (Asteraceae: Lactuca sativa). | International Journal of Systematic and Evolutionary Microbiology | 66(9), page(s): 3566-3572 | 10.1099/ijsem.0.001234 |
| Acer2020 | summary, general characteristics, enzymes, utilisation, metabolites | Acinetobacter mesopotamicus | 2020 |
Acer, Ö., Güven, K., Poli, A. |
Acinetobacter mesopotamicus sp. nov., Petroleum-degrading Bacterium, Isolated from Petroleum-Contaminated Soil in Diyarbakir, in the Southeast of Turkey. | Current Microbiology | 77, page(s): 3192–3200 | 10.1007/s00284-020-02134-9 |
| Madhaiyan2020 | summary | Mammaliicoccus sciuri, Mammaliicoccus vitulinus, Mammaliicoccus lentus, Staphylococcus carnosus, Staphylococcus petrasii | 2020 |
Madhaiyan, Munusamy; Joseph S. Wirth and Venkatakrishnan Sivaraj Saravanan |
Phylogenomic analyses of the Staphylococcaceae family suggest the reclassification of five species within the genus Staphylococcus as heterotypic synonyms, the promotion of five subspecies to novel species, the taxonomic reassignment of five Staphylococcus species to Mammaliicoccus gen. nov., and the formal assignment of Nosocomiicoccus to the family Staphylococcaceae | International Journal of Systematic and Evolutionary Microbiology | 70, page(s): 5926–5936 | 10.1099/ijsem.0.004498 |
| Batchelor1919 | summary, general characteristics, acid from carbohydrates, metabolites | Bacillus badius, Bacillus lautus, Bacillus flexus | 1919 |
Batchelor, M. D. |
Aerobic Spore-Bearing Bacteria in the Intestinal Tract of Children | Journal of Bacteriology | 4(1), page(s): 23-34 | 10.1128/jb.4.1.23-34.15.1919 |
| Alou2015a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Bacillus niameyensis | 2015 |
Alou, Tidjani M; Rathored J, Traore SI, Khelaifia S, Michelle C, Brah S, Diallo BA, Raoult D, Lagier JC. |
Bacillus niameyensis sp. nov., a new bacterial species isolated from human gut | New Microbes New Infections | 28(8), page(s): 61-69 | 10.1016/j.nmni.2015.09.011 |
| VanHorn1998 | summary, general characteristics, antibiotics | Enterococcus gallinarum, Enterococcus casseliflavus, Enterococcus flavescens, Enterococcus mundtii | 1998 |
Van Horn KG, Rodney KM. |
Colonization and microbiology of the motile enterococci in a patient population | Diagnostic Microbiology and Infectious Disease | 31(4), page(s): 525-530 | 10.1016/s0732-8893(98)00052-2 |
| Vos2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | 2011 |
Vos, P.; Garrity, G.; Jones, D.; Krieg, N.R.; Ludwig, W.; Rainey, F.A. and Schleifer, K.H. |
Bergey's manual of systematic bacteriology: Vol. 3. The Firmicutes | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1-1450 | 10.1007/b92997 | |
| CanaleParola2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sarcina maxima, Sarcina ventriculi | 2011 |
Canale-Parola, Ercole |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae Genus X. Sarcina | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 847 | 10.1007/b92997 |
| CCUG | 2021 |
University of Gothenburg |
Culture Collection University of Gothenburg - Entire Collection | https://www.ccug.se/collections/search?collection=entire | ||||
| Tindall2005 | nomenclature | Salmonella enterica, Salmonella bongori | 2005 |
Tindall BJ, Grimont PAD, Garrity GM, Euzéby JP. |
Nomenclature and taxonomy of the genus Salmonella | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 521-524 | 10.1099/ijs.0.63580-0 |
| Sanz2007 | gut microbiome, coeliac disease | compilation | 2007 |
Sanz Y, Sánchez E, Marzotto M, Calabuig M, Torriani S, Dellaglio F. |
Differences in faecal bacterial communities in coeliac and healthy children as detected by PCR and denaturing gradient gel electrophoresis | FEMS Immunology and Medical Microbiology | 51(3), page(s): 562-568 | 10.1111/j.1574-695X.2007.00337.x |
| Kato2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food contamination | Lactobacillus algidus | 2000 |
Kato Y, Sakala RM, Hayashidani H, Kiuchi A, Kaneuchi C, Ogawa M. |
Lactobacillus algidus sp. nov., a psychrophilic lactic acid bacterium isolated from vacuum-packaged refrigerated beef | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 3), page(s): 1143-1149 | 10.1099/00207713-50-3-1143 |
| Weiss1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus delbrueckii subsp. bulgaricus comb. nov., Lactobacillus delbrueckii subsp. lactis comb. nov. | 1983 |
Weiss N, Schillinger U, Kandler O. |
Lactobacillus lactis, Lactobacillus leichmannii and Lactobacillus bulgaricus, Subjective Synonyms of Lactobacillus delbrueckii, and Description of Lactobacillus delbrueckii subsp. lactis comb. nov. and Lactobacillus delbrueckii subsp. bulgaricus comb. nov. | Systematic and Applied Microbiology | 4(4), page(s): 552-557 | 10.1016/S0723-2020(83)80012-5 |
| Kim2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Leuconostoc inhae | 2003 |
Kim B, Lee J, Jang J, Kim J, Han H. |
Leuconostoc inhae sp. nov., a lactic acid bacterium isolated from kimchi | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 1123-1126 | 10.1099/ijs.0.02463-0 |
| Walker2011 | summary, gut microbiome, health, IBD, inflammatory bowel disease, compilation | compilation, Abiotrophia para-adiacens, Variovorax ginsengisoli | 2011 |
Walker AW, Sanderson JD, Churcher C, Parkes GC, Hudspith BN, Rayment N, Brostoff J, Parkhill J, Dougan G, Petrovska L. |
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. | BMC Microbiology | 11(7), | 10.1186/1471-2180-11-7 |
| Barberan2017 | 2017 |
Albert Barberán and Hildamarie Caceres Velazquez and Stuart Jones and Noah Fierer and Steven J. Hallam |
Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | mSphere | 2(4), page(s): e00237-17 | 10.1128/mSphere.00237-17 | ||
| Delaporte1967 | Brevibacterium halotolerans, Brevibacterium frigoritolerans | 1967 |
Delaporte B, Sasson A. |
Study of bacteria from arid soils of Morocco: Brevibacterium haloterans n. sp. and Brevibacterium frigoritolerans n. sp | Comptes rendus hebdomadairies des seances de l'Academie de sciences: Serie D: Sciences Naturelles | 264(18), page(s): 2257-2260 | 4963418 PMID | |
| Tindall2017a | genetics, taxonomy | Bacillus halotolerans, Bacillus axarquiensis | 2017 |
Tindall, B. J. |
The consequences of Bacillus axarquiensis Ruiz-García et al. 2005, Bacillus malacitensis Ruiz-García et al. 2005 and Brevibacterium halotolerans Delaporte and Sasson 1967 (Approved Lists 1980) being treated as heterotypic synonyms | International Journal of Systematic and Evolutionary Microbiology | 67(1), page(s): 175-176 | 10.1099/ijsem.0.001589 |
| Seo2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium fessum | 2021 |
Seo, Boram; Jeon, Kyungchan; Baek, Inwoo; Lee, Yung Mi; Baek, Kiwoon; Ko, GwangPyo |
Clostridium fessum sp. nov., isolated from human faeces | International Journal of Systematic and Evolutionary Microbiology | 71(1), | 10.1099/ijsem.0.004579 |
| Dijkshoorn2005 | Summary | Acinetobacter baumannii, Acinetobacter johnsonii, Acinetobacter junii, Acinetobacter lwoffii, Acinetobacter ursingii, Acinetobacter genomospecies 3, Acinetobacter genomospecies 10, Acinetobacter genomospecies 11 | 2005 |
Dijkshoorn L, van Aken E, Shunburne L, van der Reijden TJ, Bernards AT, Nemec A, Towner KJ. |
Prevalence of Acinetobacter baumannii and other Acinetobacter spp. in faecal samples from non-hospitalised individuals. | Clinical Microbiology and Infection | 11(4), page(s): 329-332 | 10.1111/j.1469-0691.2005.01093.x |
| Nemec2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Acinetobacter bereziniae, Acinetobacter guillouiae | 2010 |
Nemec A, Musílek M, Šedo O, De Baere T, Maixnerová M, van der Reijden TJK, Zdráhal Z, Vaneechoutte M, Dijkshoorn L. |
Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 4), page(s): 896-903 | 10.1099/ijs.0.013656-0 |
| Koizumi2019 | health, clinical, antibiotics, blood infection | Acinetobacter baumannii, Acinetobacter ursingii | 2019 |
Koizumi Y, Sakanashi D, Ohno T, Yamada A, Shiota A, Kato H, Hagihara M, Watanabe H, Asai N, Watarai M, Murotani K, Yamagishi Y, Suematsu H, Mikamo H. |
The clinical characteristics of Acinetobacter bacteremia differ among genomospecies: A hospital-based retrospective comparative analysis of genotypically identified strains. | Journal of Microbology, Immunology and Infection | 52(6), page(s): 966-972 | 10.1016/j.jmii.2019.09.007 |
| Valour2014 | antibiotics, clinical sources | Actinomyces graevenitzii | 2014 |
Valour F, Sénéchal A, Dupieux C, Karsenty J, Lustig S, Breton P, Gleizal A, Boussel L, Laurent F, Braun E, Chidiac C, Ader F, Ferry T. |
Actinomycosis: etiology, clinical features, diagnosis, treatment, and management. | Infection and Drug Resistance | 5(7), page(s): 183-197 | 10.2147/IDR.S39601 |
| Hansen2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, health | Actinomyces turicensis, Actinomyces meyeri, Actinomyces israelii, Actinomyces naeslundii, Actinomyces georgiae, Actinomyces graevenitzii, Actinomyces urogenitalis, Actinomyces viscosus | 2009 |
Hansen JM, Fjeldsøe-Nielsen H, Sulim S, Kemp M, Christensen JJ. |
Actinomyces species: A danish survey on human infections and microbiological characteristics. | Open Microbiology Journal | 23(3), page(s): 113-120 | 10.2174/1874285800903010113 |
| Hoyles2012 | summary, general characteristics, gut microbiome, compilation | compilation | 2012 |
Hoyles L, Honda H, Logan NA, Halket G, La Ragione RM, McCartney AL. |
Recognition of greater diversity of Bacillus species and related bacteria in human faeces. | Research in Microbiology | 163(1), page(s): 3-13 | 10.1016/j.resmic.2011.10.004 |
| Banat2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Aeribacillus pallidus | 2004 |
Banat IM, Marchant R, Rahman TJ. |
Geobacillus debilis sp. nov., a novel obligately thermophilic bacterium isolated from a cool soil environment, and reassignment of Bacillus pallidus to Geobacillus pallidus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2197-2201 | 10.1099/ijs.0.63231-0 |
| LaScola2004 | antibiotics | Afipia birgiae | 2004 |
La Scola B, Bryskier A, Raoult D. |
Comparison of the in vitro efficacy of telithromycin (HMR 3647) and levofloxacin with 22 antibiotic compounds against Bosea and Afipia species. | Journal of Antimicrobial Chemotherapy | 53(4), page(s): 683-685 | 10.1093/jac/dkh115 |
| Groth1996 | summary, general characteristics, enzymes, utilisation, metabolites, antibiotics | Agrococcus jenensis | 1996 |
Groth I, Schumann P, Weiss N, Martin K, Rainey FA. |
Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. | International Journal of Systematic Bacteriology | 46(1), page(s): 234-239 | 10.1099/00207713-46-1-234 |
| Hardman1960 | summary, general characteristics, enzymes, utilisation, metabolites | Clostridium aminovalericum | 1960 |
Hardman JK, Stadtman TC |
Metabolism of omega-acids. II. Fermentation of delta-aminovaleric acid by Clostridium aminovalericum n. sp. | Journal of Bacteriology | 79(4), page(s): 549-552 | 10.1128/jb.79.4.549-552.1960 |
| Robinson1975 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaeroplasma abactoclasticum-like bacteria | 1975 |
Robinson IM, Allison MJ, Hartman PA |
Anaeroplasma abactoclasticum gen. nov., sp. nov. : an Obligately Anaerobic Mycoplasma from the Rumen | International Journal of Systematic Bacteriology | 25(2), page(s): 173-181 | 10.1099/00207713-25-2-173 |
| Ueki2017 | summary, general characteristics, enzymes, metabolites, utilisation | Anaerotignum aminivorans, Anaerotignum propionicum, Clostridium neopropionicum, Clostridium lactatifermentans | 2017 |
Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki K. |
Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum. | International Journal of Systematic and Evolutionary Microbiology | 67(10), page(s): 4146-4153 | 10.1099/ijsem.0.002268 |
| Matthies2000 | summary, general characteristics, enzymes, metabolites, utilisation | Anaerovorax odorimutans, Anaerovorax odorimutans-like bacteria | 2000 |
Matthies C, Evers S, Ludwig W, Schink B. |
Anaerovorax odorimutans gen. nov., sp. nov., a putrescine-fermenting, strictly anaerobic bacterium. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 4), page(s): 1591-1594 | 10.1099/00207713-50-4-1591 |
| Glaeser2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Fictibacillus arsenicus | 2013 |
Glaeser SP, Dott W, Busse HJ, Kämpfer P. |
Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 8), page(s): 2934-2944 | 10.1099/ijs.0.049171-0 |
| Arfman1992 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus methanolicus | 1992 |
Arfman N, Dijkhuizen L, Kirchhof G, Ludwig W, Schleifer KH, Bulygina ES, Chumakov KM, Govorukhina NI, Trotsenko YA, White D, et al. |
Bacillus methanolicus sp. nov., a new species of thermotolerant, methanol-utilizing, endospore-forming bacteria. | International Journal of Systematic Bacteriology | 42(3), page(s): 439-445 | 10.1099/00207713-42-3-439 |
| Song2010Bergeys | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacteroides caccae, Bacteroides coagulans, Bacteroides eggerthii, Bacteroides finegoldii, Bacteroides fragilis, Bacteroides intestinalis, Bacteroides nordii, Bacteroides ovatus, Bacteroides pyogenes, Bacteroides salyersiae, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides vulgatus, Odoribacter splanchnicus, Phocaeicola coprocola, Phocaeicola dorei, Phocaeicola massiliensis, Phocaeicola plebeius, Phocaeicola vulgatus | 2010 |
Song, Yuli; Chengxu Liu and Sydney M. Finegold |
Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 27-41 | 10.1007/978-0-387-68572-4 |
| Mailhe2016 | summary | Bacteroides mediterraneensis | 2016 |
Mailhe M, Ricaboni D, Vitton V, Fournier PE, Khelaifia S, Raoult D. |
'Bacteroides mediterraneensis' sp. nov., a new human-associated bacterium isolated from ileum specimen. | New Microbes New Infections | 6(13), page(s): 48-50 | 10.1016/j.nmni.2016.06.003 |
| Scardovi1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium longum subsp. infantis, Bifidobacterium parvulorum, Bifidobacterium liberorum, Bifidobacterium adolescentis, Bifidobacterium longum, Bifidobacterium pseudolongum, Bifidobacterium thermophilum | 1971 |
Scardovi, V.; Trovatelli, G.; Crociani, F.; Matteuzzi, D. |
Deoxyribonucleic Acid Homology Relationships Among Species of the Genus Bifidobacterium | International Journal of Systematic and Evolutionary Microbiology | 21(4), page(s): 276-294 | 10.1099/00207713-21-4-276 |
| Watabe1993 | summary, general characteristics, acid from carbohydrates, metabolites | Bifidobacterium pullorum subsp. gallinarum, Bifidobacterium pullorum subsp. gallinarum-like bacteria | 1993 |
Watabe, Junko; Benno, Yoshimi; and Mitsuoka, Tomotari |
Bifidobacterium gallinarum sp. nov.: a New Species Isolated from the Ceca of Chickens | International Journal of Systematic and Evolutionary Microbiology | 33(2), page(s): 127-132 | 10.1099/00207713-33-2-127 |
| Liu2008a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Blautia wexlerae | 2008 |
Liu, C.; Finegold, S. M.; Song, Y.; Lawson, P. A. |
Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces 2 | International Journal of Systematic and Evolutionary Microbiology | 58(8), page(s): 1896—1902 | 10.1099/ijs.0.65208-0 |
| Li2004a | summary, general characteristics, enzymes, metabolites, utilisation | Brevundimonas nasdae, Sphingomonas yabuuchiae | 2004 |
Li Y, Kawamura Y, Fujiwara N, Naka T, Liu H, Huang X, Kobayashi K, Ezaki T. |
Sphingomonas yabuuchiae sp. nov. and Brevundimonas nasdae sp. nov., isolated from the Russian space laboratory Mir. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 3), page(s): 819-825 | 10.1099/ijs.0.02829-0 |
| Roy2019a | summary, general characteristics | Butyricimonas faecihominis, Butyricimonas paravirosa, Butyricimonas virosa | 2019 |
Roy, Tiphaine Le; der Smissen, Patrick Van; Paquot, Adrien; Delzenne, Nathalie; Muccioli, Giulio G.; Collet, Jean-François; Cani, Patrice D. |
Butyricimonas faecalis sp. nov., isolated from human faeces and emended description of the genus Butyricimonas 2. | International Journal of Systematic and Evolutionary Microbiology | 69(3), page(s): 833—838 | 10.1099/ijsem.0.003249 |
| Sakamoto2014a | summary, general characteristics | Butyricimonas virosa, Butyricimonas synergistica | 2014 |
Sakamoto, Mitsuo; Tanaka, Yoshiki; Benno, Yoshimi; Ohkuma, Moriya |
Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 9), page(s): 2992—2997 | 10.1099/ijs.0.065318-0 |
| VanDamme2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Campylobacter coli, Campylobacter mucosalis, Campylobacter concisus, Campylobacter curvus, Campylobacter fetus subsp. fetus, Campylobacter gracilis, Campylobacter helveticus, Campylobacter hominis, Campylobacter hyointestinalis subsp. hyointestinalis, Campylobacter jejuni subsp. doylei, Campylobacter jejuni subsp. jejuni, Campylobacter lanienae, Campylobacter lari subsp. lari, Campylobacter rectus, Campylobacter showae, Campylobacter upsaliensis | 2005 |
VanDamme, Peter; Dewhirst, Floyd E.; Paster, Bruce J.; On, Stephen L.W. |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Campylobacteraceae, Genus I. Campylobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 1147-1160 | ISBN-13: 978-0387-24145-6 |
| Liu2018a | summary | Campylobacter concisus, Campylobacter rectus, Campylobacter ureolyticus, Campylobacter gracilis, Campylobacter showae, Campylobacter hominis, Campylobacter curvus | 2018 |
Liu F, Ma R, Wang Y, Zhang L. |
The Clinical Importance of Campylobacter concisus and Other Human Hosted Campylobacter Species. | Frontiers in Cellular and Infection Microbiology | 8(243), page(s): 1-22 | 10.3389/fcimb.2018.00243 |
| Rainey2011eBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridioides difficile | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Clostridioides difficile | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 772-773 | 10.1007/b92997 |
| Tall2020a | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Clostridium cagae, Clostridium rectalis, Hathewaya massiliensis | 2020 |
Tall ML, Lo CI, Yimagou EK, Ndongo S, Pham TPT, Raoult D, Fournier PE, Fenollar F, Levasseur A. |
Description of Clostridium cagae sp. nov., Clostridium rectalis sp. nov. and Hathewaya massiliensis sp. nov., new anaerobic bacteria isolated from human stool samples. | New Microbes New Infections | 1(37), page(s): 100719 | 10.1016/j.nmni.2020.100719 |
| Keis2001a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium saccharoperbutylacetonicum, Clostridium saccharobutylicum | 2001 |
Keis, S.; Shaheen, R.; Jones, D. T. |
Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(6), page(s): 2095—2103 | 10.1099/00207713-51-6-2095 |
| Rainey2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium acetobutylicum, Clostridium aurantibutyricum, Clostridium baratii, Clostridium beijerinckii, Clostridium botulinum Gp I, Clostridium botulinum Gp II, Clostridium botulinum Gp III, Clostridium botulinum Gp IV, Clostridium butyricum, Clostridium cadaveris, Clostridium carboxidivorans, Clostridium carnis, Clostridium celatum, Clostridium chartatabidum, Clostridium chauvoei, Clostridium cochlearium, Clostridium diolis, Clostridium disporicum, Clostridium fallax, Clostridium haemolyticum, Clostridium intestinale, Clostridium kluyveri, Clostridium magnum, Clostridium malenominatum, Clostridium novyi A, Clostridium oceanicum, Clostridium paraputrificum, Clostridium pasteurianum, Clostridium perfringens, Clostridium putrefaciens, Clostridium quinii, Clostridium roseum, Clostridium saccharobutylicum, Clostridium saccharoperbutylacetonicum, Clostridium sardinense, Clostridium sartagoforme, Clostridium scatologenes, Clostridium schirmacherense, Clostridium septicum, Clostridium sporogenes, Clostridium subterminale, Clostridium tertium, Clostridium tetani, Clostridium thiosulfatireducens, Clostridium tyrobutyricum, Clostridium vincentii | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster I | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 739 | 10.1007/b92997 |
| Rainey2011bBergey | summary, general characteristics, enzymes, utilisation | Clostridium histolyticum, Clostridium limosum | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster II | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 781-782 | 10.1007/b92997 |
| Rainey2011cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium cellobioparum, Clostridium thermocellum, Clostridium thermosuccinogenes, Clostridium combesii | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster III | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 765, 824 | 10.1007/b92997 |
| Rainey2011dBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium methylpentosum, Clostridium leptum, Clostridium sporosphaeroides, Clostridium viride | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster IV | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 787-827 | 10.1007/b92997 |
| Rainey2011fBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium bifermentans, Clostridium hiranonis, Clostridium irregulare, Clostridium mangenotii, Clostridium sordellii, Clostridium bartlettii, Clostridium felsineum, Clostridium ghonii, Clostridium glycolicum, Clostridium lituseburense, Clostridium sticklandii | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster XI | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 758-819 | 10.1007/b92997 |
| Rainey2011gBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium amygdalinum, Clostridium celerecrescens, Clostridium citroniae, Clostridium clostridioforme, Clostridium coccoides, Clostridium hathewayi, Clostridium hylemonae, Clostridium indolis, Clostridium methoxybenzovorans, Clostridium nexile, Clostridium populeti, Clostridium aldenense, Clostridium aminovalericum, Clostridium asparagiforme, Clostridium bolteae, Clostridium glycyrrhizinilyticum, Clostridium herivorans, Clostridium innocum, Clostridium oroticum, Clostridium phytofermentans, Clostridium polysaccharolyticum, Clostridium propionicum, Clostridium saccharolyticum, Clostridium scindens, Clostridium sphenoides, Clostridium symbiosum | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster XIVa | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 738-828 | 10.1007/b92997 |
| Rainey2011hBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium colinum, Clostridium lactatifermentans, Clostridium colinum-like bacteria | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster XIVb | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 738-830 | 10.1007/b92997 |
| Rainey2011jBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium cocleatum, Clostridium ramosum, Clostridium saccharogumia, Clostridium spiroforme | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster XVIII | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 769-816 | 10.1007/b92997 |
| Rainey2011kBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium rectum | 2011 |
Rainey Fred A., Becky Jo Hollen And Alanna Small |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus I. Clostridium - Cluster XIX | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 807 | 10.1007/b92997 |
| Berkhoff1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium colinum, Clostridium colinum-like bacteria | 1985 |
Berkhoff, Herman A. |
Clostridium colinum sp. nov., nom. rev., the Causative Agent of Ulcerative Enteritis (Quail Disease) in Quail, Chickens, and Pheasants | International Journal of Systematic and Evolutionary Microbiology | 35(2), page(s): 155-159 | 10.1099/00207713-35-2-155 |
| Sallam2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium sulfidigenes, Clostridium sulfidigenes-like bacteria | 2009 |
Sallam A, Steinbüchel A. |
Clostridium sulfidigenes sp. nov., a mesophilic, proteolytic, thiosulfate- and sulfur-reducing bacterium isolated from pond sediment. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 7), page(s): 1661-1665 | 10.1099/ijs.0.004986-0 |
| Bernard2013a | antibiotics | Corynebacterium pseudodiphtheriticum | 2013 |
Bernard, Kathryn; Pacheco, Ana Luisa; Cunningham, Ian; Gill, Navdeep; Burdz, Tamara; Wiebe, Deborah |
Emendation of the description of the species Corynebacterium propinquum to include strains which produce urease. | International Journal of Systematic and Evolutionary Microbiology | 63(pt 6), page(s): 2146—2154 | 10.1099/ijs.0.046979-0 |
| González2006 | antibiotics, clinical | Corynebacterium pseudodiphtheriticum | 2006 |
González, Carranza R; Tena Gómez D, Prieto Gómez E, Barberá Farré JR, Fernández Cenjor J. |
Neumonia por Corynebacterium pseudodiphteriticum: una patologia a considerar [Pneumonia by Corynebacterium pseudodiphteriticum: an infection to consider]. | Anales de Medicina Interna | 23(3), page(s): 124-126 | 10.4321/s0212-71992006000300006 |
| Moore1994b | summary, general characteristics, metabolites, oral cavity | Dialister pneumosintes | 1994 |
Moore, L. V. H.; Moore, W. E. C. |
Oribaculum catoniae gen. nov., sp. nov.: Catonella morbi gen. nov., sp. nov.: Hallella seregens gen. nov., sp. nov.: Johnsonella ignava gen. nov., sp. nov.: and Dialister pneumosintes gen. nov., comb. nov., nom. rev., Anaerobic Gram-Negative Bacilli from the Human Gingival Crevice. | International Journal of Systematic Bacteriology | 44(2), page(s): 187—192 | 10.1099/00207713-44-2-187 |
| Farrow1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus hirae | 1985 |
Farrow, John A. E. and Collins, Matthew D. |
Enterococcus hirae, a New Species That Includes Amino Acid Assay Strain NCDO 1258 and Strains Causing Growth Depression in Young Chickens | International Journal of Systematic and Evolutionary Microbiology | 35(1), page(s): 73-75 | 10.1099/00207713-35-1-73 |
| Wade2011Bergeys | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Eubacterium callanderi, Eubacterium cellulosolvens, Eubacterium dolichum, Eubacterium eligens, Eubacterium oxidoreducens, Eubacterium oxidoreducens-like bacteria, Eubacterium plautii, Eubacterium plexicaudatum, Eubacterium plexicaudatum-like bacteria, Eubacterium rectale, Eubacterium ruminantium, Eubacterium saphenum, Eubacterium siraeum, Eubacterium tortuosum | 2011 |
Wade, W.G. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Eubacteriaceae, Genus I. Eubacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 865-891 | 10.1007/b92997 |
| Wade2011aBergeys | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Eubacterium limosum, Eubacterium barkeri, Eubacterium biforme, Eubacterium brachy, Eubacterium contortum, Eubacterium cylindroides, Eubacterium moniliforme, Eubacterium multiforme, Eubacterium ramulus, Eubacterium saburreum, Eubacterium sulci, Eubacterium tenue, Eubacterium ventriosum | 2011 |
Wade, W.G. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Eubacteriaceae, Genus I. Eubacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 865-891 | 10.1007/b92997 |
| Murdoch1998a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Peptostreptococcus magnus, Parvimonas micra, Peptostreptococcus micros, Peptostreptococcus asaccharolyticus, Peptostreptococcus anaerobius | 1998 |
Murdoch, D. A. |
Gram-Positive Anaerobic Cocci. | Clinical Microbiology Reviews | 11(1), page(s): 81—120 | 10.1128/cmr.11.1.81 |
| Archer1988 | gastroenteritis | 1988 |
Archer JR, Romero S, Ritchie AE, Hamacher ME, Steiner BM, Bryner JH, Schell RF. |
Characterization of an unclassified microaerophilic bacterium associated with gastroenteritis. | Journal of Clinical Microbiology | 26(1), page(s): 101-105 | 10.1128/jcm.26.1.101-105.1988 | |
| Gharbia2010Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Fusobacterium canifelinum, Fusobacterium gonidiaformans, Fusobacterium necrogenes, Fusobacterium necrophorum, Fusobacterium perfoetens, Fusobacterium varium | 2010 |
Gharbia, Saheer E.; Haroun N. Shah and Kirstin J. Edwards |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Fusobacteriaceae, Genus I. Fusobacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 748- | 10.1007/978-0-387-68572-4 |
| Gharbia2010aBergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Fusobacterium nucleatum, Fusobacterium mortiferum, Fusobacterium naviforme, Fusobacterium periodonticum, Fusobacterium russii, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. nucleatum, Fusobacterium nucleatum subsp. animalis, Fusobacterium nucleatum subsp. vincentii, Fusobacterium ulcerans | 2010 |
Gharbia, Saheer E.; Haroun N. Shah and Kirstin J. Edwards |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Fusobacteriaceae, Genus I. Fusobacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 748- | 10.1007/978-0-387-68572-4 |
| Collins2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Gemella haemolysans, Gemella morbillorum, Gemella sanguinis | 2011 |
Collins M.D., Falsen E. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Bacillales, Family XI. Incertae Sedis, Genus I. Gemella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 455- | 10.1007/b92997 |
| Miyoshi2021 | oral cavity | Gemella haemolysans, Porphyromonas gingivalis | 2021 |
Miyoshi T, Oge S, Nakata S, Ueno Y, Ukita H, Kousaka R, Miura Y, Yoshinari N, Yoshida A. |
Gemella haemolysans inhibits the growth of the periodontal pathogen Porphyromonas gingivalis. | Scientific Reports | 3(11), page(s): 11742 | 10.1038/s41598-021-91267-3 |
| On2005Bergey | summary, general characteristics, enzymes, antibiotics, utilisation | Helicobacter canadensis, Helicobacter cinaedi, Helicobacter fennelliae, Helicobacter mustelae, Helicobacter pullorum, Helicobacter pylori, Helicobacter winghamensis | 2005 |
Stephen L.W. On, Adrian Lee, Jani L. O’Rourke, Floyd E. Dewhirst, Bruce J. Paster, James |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Helicobacteraceae, Genus I. Helicobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 1169- | ISBN-10: 0-387-24145-0 |
| Vandamme1991a | summary, general characteristics, enzymes, utilisation, antibiotics | Helicobacter cinaedi, Helicobacter fennelliae, Helicobacter pylori, Helicobacter mustelae, | 1991 |
Vandamme, P.; Falsen, E.; Rossau, R.; Hoste, B.; Segers, P.; Tytgat, R.; J. De, L. E. Y. |
Revision of Campylobacter, Helicobacter, and Wolinella Taxonomy: Emendation of Generic Descriptions and Proposal of Arcobacter gen. nov. | International Journal of Systematic Bacteriology | 41(1), page(s): 88—103 | 10.1099/00207713-41-1-88 |
| Coenye2003a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Kerstersia gyiorum | 2003 |
Tom Coenye, Marc Vancanneyt, Margo C. Cnockaert, Enevold Falsen, Jean Swings, and Peter Vandamme |
Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Ruger and Tan 1983 as Achromobacter denitrificans comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(6), page(s): 1825—1831 | 10.1099/ijs.0.02609-0 |
| Parshina2003 | summary, general characteristics, metabolites, utilisation | Soehngenia saccharolytica, Clostridium amygdalinum | 2003 |
Parshina SN, Kleerebezem R, Sanz JL, Lettinga G, Nozhevnikova AN, Kostrikina NA, Lysenko AM, Stams AJ. |
Soehngenia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 6), page(s): 1791-1799 | 10.1099/ijs.0.02668-0 |
| Palop1989 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium celerecrescens | 1989 |
Palop, M. LL.; Valles, S.; Pinaga, F.; Flors, A. |
Isolation and Characterization of an Anaerobic, Cellulolytic Bacterium, Clostridium celerecrescens sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 39(1), page(s): 68-71 | 10.1099/00207713-39-1-68 |
| Hammes2011Bergey | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus acidophilus, Lactobacillus alimentarius, Lactobacillus algidus, Lactobacillus amylovorus, Lactobacillus buchneri subsp. buchneri, Lactobacillus crispatus, Lactobacillus delbrueckii subsp. bulgaricus, Lactobacillus delbrueckii subsp. lactis, Lactobacillus casei, Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus gasseri, Lactobacillus hamsteri, Lactobacillus helveticus, Lactobacillus hilgardii, Lactobacillus iners, Lactobacillus jensenii, Lactobacillus johnsonii, Lactobacillus kalixensis, Lactobacillus kefiranofaciens subsp. kefirgranum, Lactobacillus leichmanii, Lactobacillus paracasei, Lactobacillus paraplantarum, Lactobacillus pentosus, Lactobacillus plantarum, Lactobacillus rhamnosus, Lactobacillus rogosae, Lactobacillus sharpeae, Lactobacillus timonensis, Lactobacillus ultunensis, Lactobacillus vitulinus | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Lactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Hammes2011cBergey | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus parabuchneri, Lactobacillus parakefiri | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Lentilactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Hammes2011dBergey | summary, general characteristics, acid from carbohydrates, metabolites | Levilactobacillus brevis, Levilactobacillus brevis subsp. gravesensis | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Levilactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Hammes2011eBergey | summary, general characteristics, acid from carbohydrates, metabolites | Ligilactobacillus agilis, Ligilactobacillus animalis, Ligilactobacillus aviarius, Ligilactobacillus murinus, Ligilactobacillus ruminis, Ligilactobacillus saerimneri, Ligilactobacillus salivarius | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Ligilactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Hammes2011fBergey | summary, general characteristics, acid from carbohydrates, metabolites | Limosilactobacillus antri, Limosilactobacillus coleohominis, Limosilactobacillus fermentum, Limosilactobacillus gastricus, Limosilactobacillus mucosae, Limosilactobacillus oris, Limosilactobacillus reuteri, Limosilactobacillus vaginalis | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Limosilactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Hammes2011gBergey | summary, general characteristics, acid from carbohydrates, metabolites | Loigolactobacillus coryniformis, Loigolactobacillus coryniformis subsp. torquens | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Loigolactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Hammes2011hBergey | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus curvatus, Lactobacillus sakei | 2011 |
Walter P. Hammes, Christian Hertel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus I. Latilactobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 465- | 10.1007/b92997 |
| Holzapfel2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Leuconostoc carnosum, Leuconostoc citreum, Leuconostoc gelidum, Leuconostoc inhae, Leuconostoc lactis, Leuconostoc mesenteroides subsp. mesenteroides | 2011 |
Wilhelm. H. Holzapfel, Johann A. Björkroth And Leon M. T. Dicks |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Leuconostocaceae, Genus I. Leuconostoc | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 624- | 10.1007/b92997 |
| Garvie1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Leuconostoc mesenteroides | 1979 |
Ellen I. Garvie |
Proposal of Neotype Strains for Leuconostoc mesenteroides (Tsenkovskii) van Tieghem, Leuconostoc dextranicum (Beijerinck) Hucker and Pederson, and Leuconostoc cremoris (Knudsen and Sørensen) Garvie | International Journal of Systematic and Evolutionary Microbiology | 29(2), page(s): 149-151 | 10.1099/00207713-29-2-149 |
| Mclauchlin2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Listeria grayi, Listeria innocua, Listeria ivanovii, Listeria monocytogenes, Listeria seeligeri, Listeria welshimeri | 2011 |
James Mclauchlin And Catherine E. D. Rees |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Listeriaceae, Genus I. Listeria | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 244- | 10.1007/b92997 |
| Kloos1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Macrococcus caseolyticus | 1998 |
Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ, Ludwig W, Schleifer KH, Fiedler F, Schubert K. |
Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. no. and Macrococcus carouselicus sp. nov. | International Journal of Systematic Bacteriology | 48(Pt 3), page(s): 859-77 | 10.1099/00207713-48-3-859 |
| Schleifer1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Staphylococcus caseolyticus | 1982 |
Schleifer, K. H.; Kilpper-Bälz, R.; Fischer, U.; Faller, A.; Endl, J. |
Identification of “Micrococcus candidus” ATCC 14852 as a strain of Staphylococcus epidermidis and of “Micrococcus caseolyticus” ATCC 13548 and Micrococcus varians ATCC 29750 as Members of a New Species, Staphylococcus caseolyticus | International Journal of Systematic and Evolutionary Microbiology | 32(1), page(s): 15-20 | 10.1099/00207713-32-1-15 |
| Kato2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Methylobacterium mesophilicum, Methylobacterium radiotolerans, Methylorubrum extorquens, Methylorubrum zatmanii, Methylorubrum thiocyanatum, Methylorubrum aminovorans | 2005 |
Kato Y, Asahara M, Arai D, Goto K, Yokota A. |
Reclassification of Methylobacterium chloromethanicum and Methylobacterium dichloromethanicum as later subjective synonyms of Methylobacterium extorquens and of Methylobacterium lusitanum as a later subjective synonym of Methylobacterium rhodesianum. | Journal of General and Applied Microbiology | 51(5), page(s): 287-299 | 10.2323/jgam.51.287 |
| Yokota1993a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aureobacterium terrae, Aureobacterium trictaothecenolyticum, Aureobacterium luteolum, Aureobacterium schleiferi, Aureobacterium esteraromaticum | 1993 |
Yokota A, Takeuchi M, Sakane T, Weiss N. |
Proposal of six new species in the genus Aureobacterium and transfer of Flavobacterium esteraromaticum Omelianski to the genus Aureobacterium as Aureobacterium esteraromaticum comb. nov. | International Journal of Systematic Bacteriology | 43(3), page(s): 555-564 | 10.1099/00207713-43-3-555 |
| Tonjum2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Neisseria canis, Neisseria cinerea, Neisseria elongata, Neisseria flavescens, Neisseria gonorrhoeae, Neisseria lactamica, Neisseria macacae, Neisseria meningitidis, Neisseria mucosa, Neisseria sicca, Neisseria subflava | 2005 |
Tonjum, Tone |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Neisseriaceae, Genus I. Neisseria | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 777-798 | ISBN-10: 0-387-24145-0 |
| Hiippala2020a | mucin, inflammation, health | 2020 |
Hiippala K, Kainulainen V, Suutarinen M, Heini T, Bowers JR, Jasso-Selles D, Lemmer D, Valentine M, Barnes R, Engelthaler DM, Satokari R. |
Isolation of Anti-Inflammatory and Epithelium Reinforcing Bacteroides and Parabacteroides Spp. from A Healthy Fecal Donor. | Nutrients | 12(4), page(s): 935 | 10.3390/nu12040935 | |
| Priest2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus amylolyticus, Paenibacillus anaericanus, Paenibacillus azoreducens, Paenibacillus borealis, Paenibacillus chibensis, Paenibacillus cineris, Paenibacillus dendritiformis, Paenibacillus favisporus, Paenibacillus jamilae, Paenibacillus larvae, Paenibacillus macerans, Paenibacillus naphthalenovorans, Paenibacillus odorifer, Paenibacillus pabuli, Paenibacillus pasadenensis, Paenibacillus stellifer, Paenibacillus xylanilyticus, Paenibacillus alvei, Paenibacillus barcinonensis, Paenibacillus barengoltzii, Paenibacillus daejeonensis, Paenibacillus durus, Paenibacillus glucanolyticus, Paenibacillus graminis, Paenibacillus illinoisensis, Paenibacillus lactis, Paenibacillus lautus, Paenibacillus polymyxa, Paenibacillus rhizosphaerae, Paenibacillus thiaminolyticus, Paenibacillus timonensis | 2011 |
Priest, F.G. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Paenibacillaceae, Genus I. Paenibacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 269- | 10.1007/b92997 |
| Song2010aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Parabacteroides distasonis, Parabacteroides goldsteinii, Parabacteroides merdae | 2010 |
Song, Yuli; Chengxu Liu and Sydney M. Finegold |
Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. The Bacteroidetes. Family IV. Porphyromonadaceae, Genus V. Parabacteroides | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 27- | 10.1007/978-0-387-68572-4 |
| Ezaki2011eBergey | summary, general characteristics, metabolites | Peptoniphilus asaccharolyticus, Peptoniphilus harei, Peptoniphilus indolicus, Peptoniphilus lacrimalis | 2011 |
Takayuki Ezaki and Yoshiaki Kawamura |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Clostridiales, Family XI. Incertae Sedis, Genus VI. Peptoniphilus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1136- | 10.1007/b92997 |
| Shah2010Bergeys | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Prevotella albensis, Prevotella bivia, Prevotella brevis, Prevotella bryantii, Prevotella buccae, Prevotella copri, Prevotella corporis, Prevotella dentalis, Prevotella denticola, Prevotella disiens, Prevotella enoeca, Prevotella intermedia, Prevotella loescheii, Prevotella melaninogenica, Prevotella nigrescens, Prevotella oralis, Prevotella oulora, Prevotella pallens, Prevotella ruminicola, Prevotella shahii, Prevotella stercorea, Prevotella tannerae, Prevotella timonensis, Prevotella veroralis | 2010 |
Haroun N. Shah, Marie Anne Chattaway, Laksh ani Rajakurana and Saheer E. Gharbia |
Bergey's manual of systematic bacteriology. Vol. 4, The Bacteroidetes. Family Prevotellaceae, Genus I. Prevotella | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 86-102 | 10.1007/978-0-387-68572-4 |
| LaScola2011 | summary, metabolites | Anaerococcus provencensis, Candidatus Prevotella conceptionensis, Casaltella massiliensis, Levyella massiliensis | 2011 |
La Scola B, Fournier PE, Raoult D. |
Burden of emerging anaerobes in the MALDI-TOF and 16S rRNA gene sequencing era. | Anaerobe | 17(3), page(s): 106-112 | 10.1016/j.anaerobe.2011.05.010 |
| Watabe1983a | summary, general characteristics, acid from carbohydrates, metabolites | Bacteroides oralis, Bacteroides denticola, Bacteroides buccae, Bacteroides bivius | 1983 |
Watabe, J.; Benno, Y.; Mitsuoka, T. |
Taxonomic Study of Bacteroides oralis and Related Organisms and Proposal of Bacteroides veroralis sp. nov. | International Journal of Systematic Bacteriology | 33(1), page(s): 57—64 | 10.1099/00207713-33-1-57 |
| Holmes2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Prolixibacter bellariivorans | 2007 |
Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR. |
Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 4), page(s): 701-707 | 10.1099/ijs.0.64296-0 |
| Iino2015 | summary, general characteristics, utilisation | Prolixibacter denitrificans, Prolixibacter bellariivorans | 2015 |
Iino T, Sakamoto M, Ohkuma M. |
Prolixibacter denitrificans sp. nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus Prolixibacter and Prolixibacter bellariivorans. | International Journal of Systematic and Evolutionary Microbiology | 65(9), page(s): 2865-2869 | 10.1099/ijs.0.000343 |
| Funke1996 | summary, general characteristics, antibiotics, utilisation, clinical sources | Arthrobacter oxydans, Pseudoglutamicibacter cumminsii | 1996 |
Funke, G., Hutson, R. A., Bernard, K. A., Pfyffer, G. E., Wauters, G., & Collins, M. D. |
Isolation of Arthrobacter spp. from clinical specimens and description of Arthrobacter cumminsii sp. nov. and Arthrobacter woluwensis sp. nov. | Journal of Clinical Microbiology | 34(10), page(s): 2356–2363 | 10.1128/jcm.34.10.2356-2363.1996 |
| Drent1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium thermosuccinogenes | 1991 |
Drent WJ, Lahpor GA, Wiegant WM, Gottschal JC. |
Fermentation of Inulin by Clostridium thermosuccinogenes sp. nov., a Thermophilic Anaerobic Bacterium Isolated from Various Habitats. | Applied and Environmental Microbiology | 57(2), page(s): 455-462 | 10.1128/aem.57.2.455-462.1991 |
| Elomari1997a | summary, general characteristics, enzymes, utilisation, clinical sources | Pseudomonas aeruginosa, Pseudomonas fluorescens, Pseudomonas putida Biovar A, Pseudomonas putida Biovar B | 1997 |
Elomari, M.; Coroler, L.; Verhille, S.; Izard, D.; Leclerc, H. |
Pseudomonas monteilii sp. nov., Isolated from Clinical Specimens. | International Journal of Systematic Bacteriology | 47(3), page(s): 846—852 | 10.1099/00207713-47-3-846 |
| Izard1979 | summary, general characteristics | Rahnella aquatilis | 1979 |
Izard D, Gavini F, Trinel PA, Leclere H. |
Rahnella aquatilis, nouveau membre de la famille des Enterobacteriaceae [Rahnella aquatilis, a new member of the Enterobacteriaceae (author's transl)]. | Annales de Microbiologie | 130(2), page(s): 163-177 | 484990 PMID |
| Yuan2020 | antibiotics | Rahnella aquatilis | 2020 |
Yuan L, Li L, Zheng F, Shi Y, Xie X, Chai A, Li B. |
The complete genome sequence of Rahnella aquatilis ZF7 reveals potential beneficial properties and stress tolerance capabilities. | Archives of Microbiology | 202(3), page(s): 483-499 | 10.1007/s00203-019-01758-1 |
| Lee2019 | antibiotics, blood infection | Rahnella aquatilis | 2019 |
Lee WJ, Song Y, Park SY, Kim MJ. |
Bacteremia due to Rahnella aquatilis in a Patient with a Chemoport. | Infection and Chemotherapy | 51(2), page(s): 191-195 | 10.3947/ic.2019.51.2.191 |
| Kuzdan2015 | antibiotics, sepsis | Rahnella aquatilis | 2015 |
Kuzdan C, Soysal A, Özdemir H, Coşkun Ş, Akman İ, Bilgen H, Özek E, Bakır M. |
Rahnella aquatilis Sepsis in a Premature Newborn. | Case Reports in Pediatratrics | page(s): 2015:860671 | 10.1155/2015/860671 |
| Roeder2021 | antibiotics, blood infection | Rahnella aquatilis | 2021 |
Roeder HA, Fuller B, Scoular S. |
Septic Shock Caused by Rahnella aquatilis Bacteremia in an Immunocompetent Adult. | The American Journal of Case Reports | 16(22), page(s): e930888 | 10.12659/AJCR.930888 |
| Funke1995a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, blood infection | Rahnella aquatilis | 1995 |
Funke G, Rosner H. |
Rahnella aquatilis bacteremia in an HIV-infected intravenous drug abuser. | Diagnostic Microbiology and Infectious Disease | 22(3), page(s): 293-296 | 10.1016/0732-8893(95)00100-o |
| Stanton2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Roseburia intestinalis | 2011 |
Thaddeus B. Stanton, Sylvia H. Duncan and Harry J. Flint |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus XVI. Roseburia | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 954-956 | 10.1007/b92997 |
| Jojima2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Saccharibacter floricola, Saccharibacter floricola-like bacteria | 2004 |
Jojima Y, Mihara Y, Suzuki S, Yokozeki K, Yamanaka S, Fudou R. |
Saccharibacter floricola gen. nov., sp. nov., a novel osmophilic acetic acid bacterium isolated from pollen. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2263-2267 | 10.1099/ijs.0.02911-0 |
| Reeves1989 | salmonella | Salmonella bongori | 1989 |
Reeves MW, Evins GM, Heiba AA, Plikaytis BD, Farmer JJ 3rd. |
Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb. nov. | Journal of Clinical Microbiology | 27(2), page(s): 313-320 | 10.1128/jcm.27.2.313-320.1989 |
| Schleifer2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Staphylococcus arlettae, Staphylococcus aureus subsp. aureus, Staphylococcus auricularis, Staphylococcus capitis subsp. capitis, Staphylococcus caprae, Staphylococcus cohnii subsp. cohnii, Staphylococcus condimenti, Staphylococcus epidermidis, Staphylococcus equorum subsp. equorum, Staphylococcus haemolyticus, Staphylococcus hominis subsp. hominis, Staphylococcus intermedius, Staphylococcus kloosii, Staphylococcus lugdunensis, Staphylococcus pasteuri, Staphylococcus saccharolyticus, Staphylococcus saprophyticus subsp. saprophyticus, Staphylococcus schleiferi subsp. schleiferi, Staphylococcus sciuri, Staphylococcus simulans, Staphylococcus succinus subsp. succinus, Staphylococcus warneri, Staphylococcus xylosus | 2011 |
Karl-Heinz Schleifer and Julia A. Bell |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Staphylococcaceae, Genus I. Staphylococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 392- | 10.1007/b92997 |
| Whiley2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus acidominimus, Streptococcus agalactiae, Streptococcus alactolyticus, Streptococcus anginosus, Streptococcus anginosus subsp. whileyi, Streptococcus australis, Streptococcus constellatus subsp. constellatus, Streptococcus cristatus, Streptococcus didelphis, Streptococcus dysgalactiae, Streptococcus dysgalactiae subsp. equisimilis, Streptococcus equi subsp. equi, Streptococcus equinus, Streptococcus ferus, Streptococcus gallolyticus subsp. gallolyticus, Streptococcus gordonii, Streptococcus infantarius, Streptococcus infantarius subsp. infantarius, Streptococcus infantis, Streptococcus intermedius, Streptococcus lutetiensis, Streptococcus mitis, Streptococcus mutans, Streptococcus oralis, Streptococcus parasanguinis, Streptococcus parauberis, Streptococcus pasteurianus, Streptococcus peroris, Streptococcus pleomorphus, Streptococcus pneumoniae, Streptococcus pyogenes, Streptococcus salivarius, Streptococcus sanguinis, Streptococcus sinensis, Streptococcus sobrinus, Streptococcus suis, Streptococcus thermophilus, Streptococcus thoraltensis, Streptococcus uberis, Streptococcus vestibularis | 2011 |
Robert A. Whiley and Jeremy M. Hardie |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Streptococcaceae, Genus I. Streptococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 655- | 10.1007/b92997 |
| Kloos1975 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, skin | Staphylococcus warneri, Staphylococcus capitis, Staphylococcus hominis, Staphylococcus simulans | 1975 |
Kloos, Wesley E. and Schleifer, Karl H. |
Isolation and Characterization of Staphylococci from Human Skin II. Descriptions of Four New Species: Staphylococcus warneri, Staphylococcus capitis, Staphylococcus hominis, and Staphylococcus simulans | International Journal of Systematic and Evolutionary Microbiology | 25(1), page(s): 62-79 | 10.1099/00207713-25-1-62 |
| Hajek1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Staphylococcus intermedius | 1976 |
Hajek, V. |
Staphylococcus intermedius, a New Species Isolated from Animals | International Journal of Systematic and Evolutionary Microbiology | 26(4), page(s): 401-408 | 10.1099/00207713-26-4-401 |
| Andrewes1906 | summary, general characteristics, acid from carbohydrates | Streptococcus anginosus, Streptococcus salivarius, Streptococcus pyogenes, Streptococcus mitis, Streptococcus equinus, Streptococcus equi | 1906 |
Frederick William Andrewes and T. J. Horder |
A Study of the Streptococci Pathogenic to Man. | The Lancet | 168, page(s): 708-713 | |
| Clarke1924 | summary, general characteristics, acid from carbohydrates, oral cavity | Streptococcus mutans | 1924 |
Clarke J. K. |
On the Bacterial Factor in the Ætiology of Dental Caries. | British journal of experimental pathology | 5(3), page(s): 141–147 | 2047899 PMC |
| Arbique2004 | summary, general characteristics | Streptococcus pseudopneumoniae | 2004 |
Arbique JC, Poyart C, Trieu-Cuot P, Quesne G, Carvalho Mda G, Steigerwalt AG, Morey RE, Jackson D, Davidson RJ, Facklam RR. |
Accuracy of phenotypic and genotypic testing for identification of Streptococcus pneumoniae and description of Streptococcus pseudopneumoniae sp. nov. | Journal of Clinical Microbiology | 42(10), page(s): 4686-4696 | 10.1128/JCM.42.10.4686-4696.2004 |
| Sakamoto2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Tannerella forsythia | 2010 |
Mitsuo Sakamoto, Anne C. R. Tanner and Yoshimi Benno |
Bergey's manual of systematic bacteriology: Vol. 4. The Bacteroidetes. Family III. Porphyromonoadaceae, Genus VII. Tannerella | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 31, 78 | 10.1007/978-0-387-68572-4 |
| Robertson2010Bergey | summary, general characteristics | Ureaplasma urealyticum, Ureaplasma parvum | 2010 |
Janet A. Robertson and David Taylor-Robinson |
Bergey's manual of systematic bacteriology: Vol. 4. The Bacteroidetes. Family I. Mycoplasmataceae, Genus II. Ureaplasma | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 613-639 | 10.1007/978-0-387-68572-4 |
| Im2010 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Variovorax ginsengisoli | 2010 |
Im WT, Liu QM, Lee KJ, Kim SY, Lee ST, Yi TH. |
Variovorax ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 7), page(s): 1565-1569 | 10.1099/ijs.0.014514-0 |
| Carlier2011Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Veillonella atypica, Veillonella dispar, Veillonella montpellierensis, Veillonella parvula, Veillonella ratti, Veillonella rodentium, Veillonella rogosae | 2011 |
Jean-Philippe Carlier |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus I. Veillonella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1059- | 10.1007/b92997 |
| Heyrman2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Virgibacillus dokdonensis, Virgibacillus halodenitrificans, Virgibacillus pantothenticus, Virgibacillus proomii, Virgibacillus salexigens | 2011 |
Jeroen Heyrman, Paul de Vos and Niall Logan |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Bacillaceae, Genus XIX. Virgibacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 193- | 10.1007/b92997 |
| Bjorkroth2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Weissella cibaria, Weissella confusa, Weissella paramesenteroides, Weissella viridescens | 2011 |
Johanna Bjorkroth, Leon M.T. Dicks and Wilhelm. H. Holzapfel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Leuconostocaceae, Genus III. Weissella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 643-649 | 10.1007/b92997 |
| Rainey2011pBergey | summary | Acetivibrio alkalicellulosi, Acetivibrio straminisolvens, Acetivibrio thermocellus, Acetivibrio clariflavus | 2011 |
Rainey Fred A. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus III. Acetivibrio | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1020-1021 | 10.1007/b92997 |
| Zhilina2005 | summary, general characteristics, acid from carbohydrates, metabolites, antibiotics, utilisation | Clostridium alkalicellum | 2005 |
Zhilina TN, Kevbrin VV, Turova TP, Lysenko AM, Kostrikina NA, Zavarzin GA. |
[Clostridium alkalicellum sp. nov., an obligately alkaliphilic cellulolytic bacterium from a soda lake in the Baikal region] | Mikrobiologiia | 74(5), page(s): 642-653 | 16315983 PMID |
| Nemec2001 | summary, general characteristics, acid from carbohydrates, utilisation, clinical sources | Acinetobacter ursingii, Acinetobacter schindleri | 2001 |
Nemec A, De Baere T, Tjernberg I, Vaneechoutte M, van der Reijden TJ, Dijkshoorn L. |
Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 5), page(s): 1891-1899 | 10.1099/00207713-51-5-1891 |
| Juni2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Acinetobacter baumannii, Acinetobacter haemolyticus, Acinetobacter johnsonii, Acinetobacter junii, Acinetobacter calcoaceticus, Acinetobacter lwoffii, Acinetobacter radioresistens | 2005 |
Elliot Juni |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria. Family Moraxellaceae, Genus II. Acinetobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 425-437 | ISBN 13: 9780387241449 |
| MartinCarnahan2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Aeromonas allosaccharophila, Aeromonas bestiarum, Aeromonas caviae, Aeromonas eucrenophila, Aeromonas hydrophila, Aeromonas hydrophila subsp. hydrophila, Aeromonas jandaei, Aeromonas media, Aeromonas sobria, Aeromonas trota, Aeromonas veronii, Aeromonas salmonicida, Aeromonas schubertii | 2005 |
Amy Martin-Carnahan and Samuel Joseph |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Aeromonadaceae, Genus I. Aeromonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 557-577 | ISBN 13: 9780387241449 |
| Kilian2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Haemophilus aphrophilus, Haemophilus ducreyi, Haemophilus segnis, Haemophilus haemolyticus, Haemophilus influenzae, Haemophilus parainfluenzae, Haemophilus parahaemolyticus, Haemophilus paraphrohaemolyticus | 2005 |
Mogens Kilian |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Pasteurellaceae, Genus III. Haemophilus | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 883-904 | ISBN 13: 9780387241449 |
| Malnick2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaerobiospirillum succiniciproducens, Anaerobiospirillum thomasii | 2005 |
Henry Malnick |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Succinivibrionaceae, Genus II. Anaerobiospirillum | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 582-583 | ISBN 13: 9780387241449 |
| Scheutz2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Escherichia coli, Escherichia hermannii, Escherichia fergusonii, Escherichia vulneris | 2005 |
Flemming Scheutz and Nancy Strockbine |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus I. Escherichia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 607-624 | ISBN 13: 9780387241449 |
| Farmer2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cedecea davisae, Cedecea lapagei, Cedecea neteri | 2005 |
J.J. Farmer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus IX. Cedecea | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 648-651 | ISBN 13: 9780387241449 |
| Friederiksen2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Citrobacter amalonaticus, Citrobacter braakii, Citrobacter farmeri, Citrobacter freundii, Citrobacter gillenii, Citrobacter koseri, Citrobacter murliniae, Citrobacter rodentium, Citrobacter sedlakii, Citrobacter werkmanii, Citrobacter youngae | 2005 |
Wilhelm Friederiksen |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus X. Citrobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 651-656 | ISBN 13: 9780387241449 |
| Grimont2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cronobacter sakazakii, Enterobacter asburiae, Enterobacter cancerogenus, Enterobacter cloacae, Enterobacter cowanii, Enterobacter hormaechei subsp. hormaechei, Enterobacter hormaechei subsp. steigerwaltii, Enterobacter aerogenes, Enterobacter gergoviae, Enterobacter nimipressuralis | 2005 |
Patrick Grimont and Francine Grimont |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XII. Enterobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 661-669 | ISBN 13: 9780387241449 |
| Sakazaki2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Edwardsiella tarda | 2005 |
Riichi Sakazaki |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XI. Edwardsiella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 657-661 | ISBN 13: 9780387241449 |
| O'Hara2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Ewingella americana | 2005 |
Caroline O'Hara and J.J. Farmer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XIV. Ewingella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 679-681 | ISBN 13: 9780387241449 |
| Sakazaki2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Hafnia alvei | 2005 |
Riichi Sakazaki |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XV. Hafnia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 681-685 | ISBN 13: 9780387241449 |
| Grimont2005aBergey | summary, general characteristics, enzymes, metabolites, utilisation | Klebsiella oxytoca, Klebsiella pneumoniae, Klebsiella pneumoniae subsp. ozaenae, Klebsiella pneumoniae subsp. rhinoscleromatis, Klebsiella ornithinolytica, Klebsiella planticola, Klebsiella terrigena | 2005 |
Patrick Grimont and Francine Grimont |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XVI. Klebsiella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 685-693 | ISBN 13: 9780387241449 |
| Farmer2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Kluyvera ascorbata | 2005 |
J.J. Farmer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XVII. Kluyvera | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 694-698 | ISBN 13: 9780387241449 |
| O'Hara2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Leclercia adecarboxylata | 2005 |
Caroline O'Hara and J.J. Farmer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XVIII. Leclercia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 698-701 | ISBN 13: 9780387241449 |
| Farmer2005cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Leminorella grimontii, Leminorella richardii | 2005 |
J.J. Farmer and Frances Brenner |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XIX. Leminorella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 702-705 | ISBN 13: 9780387241449 |
| Farmer2005dBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Moellerella wisconsensis | 2005 |
J.J. Farmer and Frances Brenner |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XX. Moellerella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 705-707 | ISBN 13: 9780387241449 |
| Janda2005dBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Morganella morganii | 2005 |
J. Michael Janda and Sharon Abbott |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXI. Morganella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 707-709 | ISBN 13: 9780387241449 |
| Grimont2005bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pantoea agglomerans | 2005 |
Patrick Grimont and Francine Grimont |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXIII. Pantoea | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 713-720 | ISBN 13: 9780387241449 |
| Janda2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Plesiomonas shigelloides | 2005 |
J. Michael Janda |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXVII. Plesiomonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 740-744 | ISBN 13: 9780387241449 |
| Schindler2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pragia fontium | 2005 |
Jiri Schindler |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXVIII. Pragia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 744-745 | ISBN 13: 9780387241449 |
| Penner2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Proteus mirabilis, Proteus penneri, Proteus vulgaris | 2005 |
John Penner |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXIX. Proteus | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 745-753 | ISBN 13: 9780387241449 |
| Penner2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Providencia alcalifaciens, Providencia rettgeri, Providencia rustigianii, Providencia stuartii | 2005 |
John Penner |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXX. Providencia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 753-759 | ISBN 13: 9780387241449 |
| Kampfer2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rahnella aquatilis | 2005 |
Peter Kampfer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXXI. Rahnella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 759-763 | ISBN 13: 9780387241449 |
| Popoff2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Salmonella bongori, Salmonella enterica, Salmonella enterica subsp. arizonae, Salmonella enterica subsp. enterica serovar Choleraesuis, Salmonella enterica subsp. enterica serovar Paratyphi A, Salmonella enterica subsp. enterica serovar Typhimurium, Salmonella enterica subsp. enterica serovar Enteritidis, Salmonella enterica subsp. enterica serovar Typhi | 2005 |
Michael Popoff and Leon Le Minor |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXXIII. Salmonella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 764-799 | ISBN 13: 9780387241449 |
| Grimont2005cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Serratia ficaria, Serratia fonticola, Serratia liquefaciens, Serratia marcescens, Serratia odorifera | 2005 |
Francine Grimont and Patrick Grimont |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXXIV. Serratia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 799-811 | ISBN 13: 9780387241449 |
| Strockbine2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Shigella boydii, Shigella dysenteriae, Shigella flexneri, Shigella sonnei | 2005 |
Nancy Strockbine and Anthony Maurelli |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXXV. Shigella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 811-823 | ISBN 13: 9780387241449 |
| Farmer2005eBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Tatumella ptyseos | 2005 |
J.J. Farmer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXXVII. Tatumella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 825-826 | ISBN 13: 9780387241449 |
| Lindquist2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Trabulsiella guamensis | 2005 |
John Lindquist and J.J. Farmer |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XXXVIII. Trabulsiella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 827-828 | ISBN 13: 9780387241449 |
| Bottone2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Yersinia aldovae, Yersinia bercovieri, Yersinia enterocolitica subsp. enterocolitica, Yersinia frederiksenii, Yersinia kristensenii subsp. rochesterensis, Yersinia mollaretii, Yersinia pestis, Yersinia pseudotuberculosis, Yersinia rohdei | 2005 |
Edward Bottone, Herve Bercovier and Henri Mollaret |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XLI. Yersinia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 838-848 | ISBN 13: 9780387241449 |
| Farmer2005fBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Yokenella regensburgei | 2005 |
J.J. Farmer and Frances Brenner |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XLII. Yokenella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 848-850 | ISBN 13: 9780387241449 |
| Olsen2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Actinobacillus pleuropneumoniae, Actinobacillus ureae | 2005 |
Ingar Olsen and Kristian Moller |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Pasteurellaceae, Genus II. Actinobacillus | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 866-883 | ISBN 13: 9780387241449 |
| Babenzien2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Nevskia ramosa | 2005 |
Hans-Dietrich Babenzien and Heribert Cypionka |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Xanthomonadaceae, Genus V. Nevskia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 101-104 | ISBN 13: 9780387241449 |
| Juni2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Moraxella catarrhalis, Moraxella osloensis | 2005 |
Elliot Juni and Kjell Bovre |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Moraxellaceae, Genus I. Moraxella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 417-425 | ISBN 13: 9780387241449 |
| Bowman2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Shewanella algae | 2005 |
John Bowman |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Alteromonadaceae, Genus VI. Shewanella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 480-491 | ISBN 13: 9780387241449 |
| Farmer2005gBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Vibrio alginolyticus, Vibrio cholerae, Vibrio cincinnatiensis, Vibrio fluvialis, Vibrio furnissii, Vibrio hollisae, Vibrio metschnikovii, Vibrio mimicus, Vibrio natriegens, Vibrio parahaemolyticus, Vibrio proteolyticus, Vibrio vulnificus | 2005 |
J.J. Farmer, Michael Janda, Frances Brenner, Daniel Cameron, Karen Birkhead |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Vibrionaceae, Genus I. Vibrio | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 494-546 | ISBN 13: 9780387241449 |
| Bryant2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Succinivibrio dextrinosolvens | 2005 |
Marvin Bryant |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Succinivibrionaceae, Genus I. Succinivibrio | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 581-582 | ISBN 13: 9780387241449 |
| Palleroni2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Stenotrophomonas maltophilia | 2005 |
Norberto Palleroni |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Xanthomonadaceae. Genus IX. Stenotrophomonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 107-115 | ISBN 13: 9780387241449 |
| Pereira1957 | summary, general characteristics, metabolites, utilisation | Pseudomonas fragi | 1957 |
Pereira JN, Morgan ME. |
Nutrition and physiology of Pseudomonas fragi. | Journal of Bacteriology | 74(6), page(s): 710-713 | 10.1128/jb.74.6.710-713.1957 |
| Sanders1997 | antibiotics | Klebseilla aerogenes, Enterobacter cloacae, Enterobacter agglomerans, Enterobacter sakazakii | 1997 |
Sanders WE Jr, Sanders CC. |
Enterobacter spp.: pathogens poised to flourish at the turn of the century. | Clinical Microbiology Reviews | 10(2), page(s): 220-241 | 10.1128/CMR.10.2.220 |
| Palleroni2005bBergey | summary, general characteristics, enzymes, metabolites, utilisation | Pseudomonas alcaligenes, Pseudomonas caricapapayae, Pseudomonas chlororaphis, Pseudomonas gessardii, Pseudomonas libanensis, Pseudomonas mendocina, Pseudomonas migulae, Pseudomonas rhodesiae, Pseudomonas taetrolens, Pseudomonas aeruginosa, Pseudomonas citronellolis, Pseudomonas fluorescens, Pseudomonas fragi, Pseudomonas luteola, Pseudomonas monteilii, Pseudomonas nitroreducens, Pseudomonas oleovorans, Pseudomonas oryzihabitans, Pseudomonas putida Biovar A, Pseudomonas putida Biovar B, Pseudomonas stutzeri, Pseudomonas tolaasii | 2005 |
Norberto Palleroni |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Pseudomonadaceae, Genus I. Pseudomonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 323-379 | ISBN 13: 9780387241449 |
| Busse2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Achromobacter denitrificans, Achromobacter xylosoxidans | 2005 |
Hans-Jurgen Busse and Georg Auling |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Alcaligenaceae, Genus II. Achromobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 658-662 | ISBN-13: 978-0387-24145-6 |
| Willems2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Acidovorax facilis | 2005 |
Anne Willems and Monique Gillis |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Comamonadaceae, Genus II. Acidovorax | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 696-703 | ISBN-13: 978-0387-24145-6 |
| Weyant2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Afipia felis, Afipia lausannensis | 2005 |
Robbin Weyant and Anne Whitney |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Bradyrhizobium, Genus II. Afipia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 443-448 | ISBN-13: 978-0387-24145-6 |
| Young2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Agrobacterium radiobacter, Agrobacterium tumefaciens, Agrobacterium rhizogenes | 2005 |
John M. Young, Allen Kerr and Hiroyuki Sawada |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Rhizobiaceae, Genus II. Agrobacterium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 340-345 | ISBN-13: 978-0387-24145-6 |
| Busse2005aBergey | summary, general characteristics, enzymes, metabolites, utilisation | Alcaligenes faecalis subsp. faecalis, Alcaligenes faecalis | 2005 |
Hans-Jurgen Busse and Georg Auling |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Alcaligenaceae, Genus II. Alcaligenes | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 653-658 | ISBN-13: 978-0387-24145-6 |
| VanDamme2005aBergey | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Aliarcobacter butzleri | 2005 |
VanDamme, Peter; Dewhirst, Floyd E.; Paster, Bruce J.; On, Stephen L.W. |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Campylobacteraceae, Genus II. Arcobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 1161-1165 | ISBN-13: 978-0387-24145-6 |
| Willems2005aBergey | summary, general characteristics, enzymes, metabolites, utilisation | Comamonas terrigena, Comamonas testosteroni | 2005 |
Anne Willems and Monique Gillis |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Comamonadaceae, Genus I. Comamonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 689-696 | ISBN-13: 978-0387-24145-6 |
| Yabuuchi2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Ralstonia mannitolilytica, Ralstonia pickettii Biovar Va-1&2, Ralstonia metallidurans | 2005 |
Eiko Yabuuchi, Yoshiaki Kawamura and Takayuki Ezaki |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Burkholderiaceae, Genus I. Ralstonia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 609-620 | ISBN-13: 978-0387-24145-6 |
| Sly2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Delftia acidovorans | 2005 |
Lindsay I. Sly, Aimin Wen and Mark Fegan |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Comamonadaceae, Genus IV. Delftia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 706-709 | ISBN-13: 978-0387-24145-6 |
| Kuever2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Desulfovibrio desulfuricans, Desulfovibrio piger, Desulfovibrio vulgaris | 2005 |
Jan Kuever, Fred A. Rainey and Friedrich Widdel |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Desulfovibrionaceae, Genus I. Desulfovibrio | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 926-938 | ISBN-13: 978-0387-24145-6 |
| Bottone2005aBergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Eikenella corrodens | 2005 |
Edward J. Bottone, Francis L. Jackson and Yvonne E. Goodman |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Neisseriaceae, Genus V. Eikenella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 828-832 | ISBN-13: 978-0387-24145-6 |
| On2005Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Helicobacter bilis, Helicobacter canadensis, Helicobacter canis, Helicobacter cinaedi, Helicobacter fennelliae, Helicobacter mustelae, Helicobacter pullorum, Helicobacter pylori | 2005 |
Stephen L.W. On, Adrian Lee, Jani L. O’Rourke, Floyd E. Dewhirst, Bruce J. Paster, James |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Helicobacteraceae, Genus I. Helicobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 1169-1189 | ISBN-13: 978-0387-24145-6 |
| Weyant2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Kingella oralis | 2005 |
Robbin Weyant |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Neisseriaceae, Genus VIII. Kingella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 836-839 | ISBN-13: 978-0387-24145-6 |
| GernerSmidt2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Lautropia mirabilis | 2005 |
Peter Gerner-Smidt |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Burkholderiaceae, Genus III. Lautropia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 604-605 | ISBN-13: 978-0387-24145-6 |
| Editorial2005Bergey | summary, general characteristics, enzymes | Massilia aurea | 2005 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Oxalobacteraceae, Genus V. Massilia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 643 | ISBN-13: 978-0387-24145-6 |
| Chen2005Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Mesorhizobium loti | 2005 |
Wen Xin Chen, En Tao Wang And L. David Kuykendall |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Phyllobacteriaceae, Genus VI. Mesorhizobium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 403-408 | ISBN-13: 978-0387-24145-6 |
| Green2005Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Methylobacterium mesophilicum, Methylobacterium radiotolerans, Methylorubrum extorquens, Methylorubrum zatmanii | 2005 |
Peter N. Green |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Methylobacteriaceae, Genus I. Methylobacterium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 567-571 | ISBN-13: 978-0387-24145-6 |
| Patureau2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Microvirgula aerodenitrificans | 2005 |
Dominique Patureau |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Neisseriaceae, Genus IX. Microvirgula | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 840-841 | ISBN-13: 978-0387-24145-6 |
| Holmes2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Ochrobactrum anthropi, Ochrobactrum intermedium | 2005 |
Barry Holmes |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Brucellaceae, Genus III. Ochrobactrum | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 389-392 | ISBN-13: 978-0387-24145-6 |
| Allison2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Oxalobacter formigenes | 2005 |
Milton J. Allison, Barbara J. Macgregor, Richard Sharp And David A. Stahl |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Oxalobacteraceae, Genus I. Oxalobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 624-627 | ISBN-13: 978-0387-24145-6 |
| VanSpanning2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paracoccus carotinifaciens | 2005 |
Rob J.M. Van Spanning, Adriaan H. Stouthamer, Simon C. Baker And Henk W. Van Verseveld |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Rhodobacteraceae, Genus XII. Paracoccus | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 197-204 | ISBN-13: 978-0387-24145-6 |
| Hirsch2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Pedomicrobium ferrugineum | 2005 |
Peter Hirsch And Rainer Gebers |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Hyphomicrobiaceae, Genus XIV. Pedomicrobium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 527-537 | ISBN-13: 978-0387-24145-6 |
| Mergaert2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Phyllobacterium myrsinacearum | 2005 |
Joris Mergaert And Jean Swings |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Phyllobacteriaceae, Genus I. Phyllobacterium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 394-396 | ISBN-13: 978-0387-24145-6 |
| Busse2005bBergey | summary, general characteristics, enzymes, metabolites, utilisation | Pigmentiphaga kullae | 2005 |
Hans-Jurgen Busse |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Alcaligenaceae, Genus VII. Pigmentiphaga | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 681 | ISBN-13: 978-0387-24145-6 |
| Yabuuchi2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Sphingomonas adhaesiva, Sphingomonas paucimobilis | 2005 |
Eiko Yabuuchi And Yoshimasa Kosako |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Sphingomonadaceae, Genus I. Sphingomonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 234-258 | ISBN-13: 978-0387-24145-6 |
| Wexler2005aBergey | summary, general characteristics, enzymes, antibiotics | Sutterella wadsworthensis | 2005 |
Hannah M. Wexler |
Bergey's manual of systematic bacteriology. Vol. 2, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Alcaligenaceae, Genus VIII. Sutterella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 682-684 | ISBN-13: 978-0387-24145-6 |
| Ezaki2011bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Abiotrophia defectiva | 2011 |
Takayuki Ezaki And Yoshiaki Kawamura |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Aerococcaceae, Genus II. Abiotrophia | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 536-538 | 10.1007/b92997 |
| Dong2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Acetanaerobacterium elongatum | 2011 |
Xiuzhu Dong |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus II. Acetanaerobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1019-1020 | 10.1007/b92997 |
| Russell2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Acidaminococcus fermentans | 2011 |
James B. Russell |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus III. Acidaminococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1067-1068 | 10.1007/b92997 |
| Collins2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Aerococcus viridans | 2011 |
Matthew D. Collins And Enevold Falsen |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Aerococcaceae, Genus I. Aerococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 533-537 | 10.1007/b92997 |
| Rainey2011qBergey | summary, general characteristics, metabolites, utilisation | Allisonella histaminiformans | 2011 |
Rainey Fred A. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus IV. Allisonella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1068-1069 | 10.1007/b92997 |
| Ezaki2011cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Anaerococcus hydrogenalis, Anaerococcus octavius, Anaerococcus prevotii, Anaerococcus vaginalis | 2011 |
Takayuki Ezaki And Kiyofumi Ohkusu |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Incertae Sedis, Genus I. Anaerococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1030-1131 | 10.1007/b92997 |
| Rainey2011rBergey | summary, general characteristics, enzymes, metabolites, utilisation | Anaerofilum pentosovorans | 2011 |
Rainey Fred A. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus IV. Anaerofilum | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1022-1023 | 10.1007/b92997 |
| Lawson2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Anaerofustis stercorihominis | 2011 |
Paul A. Lawson |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Eubacteriaceae, Genus IV. Anaerofustis | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 897-900 | 10.1007/b92997 |
| Carlier2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Anaeroglobus geminatus | 2011 |
Jean-Philippe Carlier |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus VI. Anaeroglobus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1071-1073 | 10.1007/b92997 |
| Editorial2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Anaerostipes caccae | 2011 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus III. Anaerostipes | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 924-925 | 10.1007/b92997 |
| Lawson2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Anaerotruncus colihominis | 2011 |
Paul A. Lawson |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus V. Anaerotruncus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1023-1025 | 10.1007/b92997 |
| Schink2011Bergey | summary, general characteristics, metabolites, utilisation | Anaerovorax odorimutans, Anaerovorax odorimutans-like bacteria | 2011 |
Bernhard Schink |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Eubacteriales, Family XI. Incertae Sedis, Genus I. Anaerococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1156-1157 | 10.1007/b92997 |
| Logan2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aneurinibacillus aneurinilyticus, Aneurinibacillus migulanus | 2011 |
Niall A. Logan And Paul De Vos |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Paenibacillaceae, Genus III. Aneurinibacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 298-305 | 10.1007/b92997 |
| Garnova2011Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Anoxynatronum sibiricum | 2011 |
Elena S. Garnova And Tatjana N. Zhilina |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Clostridiaceae, Genus IV. Anoxynatronum | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 831-834 | 10.1007/b92997 |
| Ezaki2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ruminococcus albus, Ruminococcus bromii, Ruminococcus callidus, Ruminococcus flavefaciens, Ruminococcus gnavus, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus lactaris, Ruminococcus luti, Ruminococcus obeum, Ruminococcus productus, Ruminococcus schinkii, Ruminococcus torquesi | 2011 |
Takayuki Ezaki |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus I. Ruminococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1016-1018 | 10.1007/b92997 |
| Logan2011bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brevibacillus agri, Brevibacillus borstelensis, Brevibacillus brevis, Brevibacillus centrosporus, Brevibacillus choshinensis, Brevibacillus formosus, Brevibacillus laterosporus, Brevibacillus parabrevis, Brevibacillus thermoruber | 2011 |
Niall A. Logan And Paul De Vos |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Paenibacillaceae, Genus IV. Brevibacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 305-316 | 10.1007/b92997 |
| Sneath2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Brochothrix thermosphacta | 2011 |
Peter H.A. Sneath |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Listeriaceae, Genus II. Brochothrix | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 257-261 | 10.1007/b92997 |
| Wade2011Bergey | summary, general characteristics, metabolites, utilisation | Brochothrix thermosphacta | 2011 |
William G. Wade And Julia Downes |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Erysipelotrichaceae, Genus III. Bulleidia | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1307-1309 | 10.1007/b92997 |
| Willems2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Butyrivibrio crossotus, Butyrivibrio fibrisolvens | 2011 |
Anne Willems And Matthew D. Collins |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus V. Butyrivibrio | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 927-937 | 10.1007/b92997 |
| Ezaki2011dBergey | summary, general characteristics, acid from carbohydrates, metabolites | Coprococcus catus, Coprococcus comes, Coprococcus eutactus | 2011 |
Takayuki Ezaki |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus VII. Coprococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 940-941 | 10.1007/b92997 |
| Wade2011bBergey | summary, general characteristics, acid from carbohydrates, metabolites | Dialister invisus, Dialister pneumosintes, Dialister propionicifaciens, Dialister propionicifaciens-like bacteria | 2011 |
William G. Wade |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus XII. Dialister | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1080-1082 | 10.1007/b92997 |
| Blaut2011Bergey | summary, general characteristics, metabolites, utilisation | Dorea formicigenerans, Dorea longicatena | 2011 |
Michael Blaut, Matthew D. Collins And David Taras |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus VIII. Dorea | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 941-943 | 10.1007/b92997 |
| Svec2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus asini, Enterococcus avium, Enterococcus columbae, Enterococcus caccae, Enterococcus canintestini, Enterococcus canis, Enterococcus casseliflavus, Enterococcus cecorum, Enterococcus dispar, Enterococcus durans, Enterococcus faecalis, Enterococcus faecium, Enterococcus gallinarum, Enterococcus gilvus, Enterococcus hermanniensis, Enterococcus haemoperoxidus, Enterococcus hirae, Enterococcus italicus, Enterococcus moraviensis, Enterococcus mundtii, Enterococcus pallens, Enterococcus phoeniculicola, Enterococcus pseudoavium, Enterococcus raffinosus, Enterococcus saccharolyticus, Enterococcus villorum | 2011 |
Pavel Svec And Luc A. Devriese |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Enterococcaceae, Genus I. Enterococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 594-607 | 10.1007/b92997 |
| Collins2011bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Exiguobacterium aurantiacum | 2011 |
Matthew D. Collins |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Bacillales, Family XII. Incertae Sedis, Genus I. Exiguobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 460-464 | 10.1007/b92997 |
| LaClaire2000 | antibiotics, clinical sources | Facklamia tabacinasalis | 2000 |
LaClaire L, Facklam R. |
Antimicrobial susceptibilities and clinical sources of Facklamia species. | Antimicrobial Agents Chemotheropy | 44(8), page(s): 2130-2132 | 10.1128/AAC.44.8.2130-2132.2000 |
| Duncan2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Faecalibacterium prausnitzii | 2011 |
Sylvia H. Duncan And Harry J. Flint |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus VI. Faecalibacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1026-1027 | 10.1007/b92997 |
| Jalava2011Bergey | summary, general characteristics, metabolites, antibiotics, utilisation | Filifactor alocis, Filifactor villosus | 2011 |
Jari Jalava And Erkki Eerola |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Peptostreptococcaceae, Genus II. Filifactor | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1009-1013 | 10.1007/b92997 |
| Logan2011cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Geobacillus stearothermophilus, Geobacillus vulcani | 2011 |
Niall A. Logan, Paul De Vos And Anna Dinsdale |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Bacilliaceae, Genus VII. Geobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 144-160 | 10.1007/b92997 |
| Lawson2011bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Granulicatella adiacens, Granulicatella elegans, Granulicatella para-adiacens | 2011 |
Paul A. Lawson |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Carnobacteriaceae, Genus X. Granulicatella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 574-578 | 10.1007/b92997 |
| Whitehead2011Bergey | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Hespellia porcina, Hespellia stercorisuis | 2011 |
Terence R. Whitehead, Paul A. Lawson And Michael A. Cotta |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus IX. Hespellia | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 944-945 | 10.1007/b92997 |
| Willems2011aBergey | summary, general characteristics, acid from carbohydrates, metabolites | Holdemania filiformis | 2011 |
Anne Willems |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Erysipelotrichaceae, Genus VI. Holdemania | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1310-1312 | 10.1007/b92997 |
| Pukall2011Bergey | summary, general characteristics, utilisation, metabolites | Kurthia gibsonii, Kurthia zopfii | 2011 |
Rüdiger Pukall And Erko Stackebrandt |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Planococcaceae, Genus V. Kurthia | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 364-370 | 10.1007/b92997 |
| Rainey2011tBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lachnobacterium bovis | 2011 |
Rainey Fred A. |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus XI. Lachnobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 946-947 | 10.1007/b92997 |
| Cornick2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolitesm, utilisation | Lachnospira pectinoschiza | 2011 |
Nancy A. Cornick and Thaddeus B. Stanton |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus I. Lachnospira | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 921-923 | 10.1007/b92997 |
| Teuber2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolitesm, utilisation | Lactococcus cremoris, Lactococcus garvieae, Lactococcus lactis subsp. lactis, Lactococcus plantarum, Lactococcus raffinolactis | 2011 |
Michael Teuber |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Streptococcaceae, Genus II. Lactococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 711-722 | 10.1007/b92997 |
| Schleifer2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Macrococcus caseolyticus | 2011 |
Karl-Heinz Schleifer |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Staphylococcaceae, Genus III. Macrococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 422-426 | 10.1007/b92997 |
| Lawson2011cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Marvinbryantia formatexigens | 2011 |
Paul A. Lawson |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus IV. Bryantella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 925-927 | 10.1007/b92997 |
| Marchandin2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Megasphaera elsdenii | 2011 |
Hélène Marchandin, Riikka Juvonen And Auli Haikara |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus XIII. Megasphaera | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1082-1090 | 10.1007/b92997 |
| Willems2011bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Mitsuokella multacida, Mitsuokella jalaludinii | 2011 |
Anne Willems And Matthew D. Collins |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus XIV. Mitsuokella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1090-1094 | 10.1007/b92997 |
| Editorial2011bBergey | summary, general characteristics, metabolites, utilisation | Mogibacterium diversum, Mogibacterium neglectum, Mogibacterium timidum, Mogibacterium vescum | 2011 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Clostridiales, Family XIII. Incertae Sedis, Genus II. Mogibacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1157-1160 | 10.1007/b92997 |
| Carlier2011bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Moryella indoligenes | 2011 |
Jean-Philippe Carlier |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus XII. Moryella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 948-950 | 10.1007/b92997 |
| Carlier2011cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Oribacterium sinus | 2011 |
Jean-Philippe Carlier |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus XIII. Oribacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 950-951 | 10.1007/b92997 |
| Patel2011Bergey | summary, general characteristics, metabolites, utilisation | Papillibacter cinnamivorans | 2011 |
Bharat K. C. Patel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus IX. Papillibacter | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1033-1034 | 10.1007/b92997 |
| Editorial2011cBergey | summary, general characteristics, metabolites, utilisation | Parasporobacterium paucivorans | 2011 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lachnospiraceae, Genus XIV. Parasporobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 952 | 10.1007/b92997 |
| Editorial2011dBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Parvimonas micra | 2011 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Clostridiales, Family XI. Incertae Sedis, Genus V. Parvimonas | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1135-1136 | 10.1007/b92997 |
| Holzapfel2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pediococcus acidilactici, Pediococcus damnosus, Pediococcus pentosaceus | 2011 |
Wilhelm. H. Holzapfel, Charles M.A.P. Franz, Wolfgang Ludwig and Leon M.T. Dicks |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Lactobacillaceae, Genus III. Pediococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 513-520 | 10.1007/b92997 |
| Ezaki2011Bergey | summary, general characteristics, metabolites, utilisation | Peptococcus niger | 2011 |
Takayuki Ezaki |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Peptococcaceae, Genus I. Peptococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 971 | 10.1007/b92997 |
| Ezaki2011fBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Peptostreptococcus anaerobius, Peptostreptococcus stomatis | 2011 |
Takayuki Ezaki |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Peptostreptococcaceae, Genus I. Peptostreptococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1008-1009 | 10.1007/b92997 |
| Stackebrandt2011Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Phascolarctobacterium faecium | 2011 |
Erko Stackebrandt and Ro Osawa |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus XVI. Phascolarctobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1100-1102 | 10.1007/b92997 |
| Shivaji2011Bergey | summary, general characteristics, enzymes, antibiotics, utilisation | Planococcus rifietoensis | 2011 |
Sisinthy Shivaji |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Planococcaceae, Genus I. Planococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 348-354 | 10.1007/b92997 |
| Yoon2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates | Planomicrobium chinense | 2011 |
Jung-Hoon Yoon, Byung-Chun Kim and Yong-Ha Park |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Planococcaceae, Genus VII. Planomicrobium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 373-376 | 10.1007/b92997 |
| Willems2011cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pseudoramibacter alactolyticus | 2011 |
Anne Willems and Matthew D. Collins |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Eubacteriaceae, Genus VI. Pseudoramibacter | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 902-905 | 10.1007/b92997 |
| Hungate1957 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Streptococcus bovis, Ruminococcus albus, Ruminococcus flavefaciens, Clostridium longisporum, Clostridium lochheadii | 1957 |
Hungate R.E. |
Microorganisms in the rumen of cattle fed a constant ration. | Canadian Journal of Microbiology | 3(2), page(s): 289-311 | 10.1139/m57-034 |
| Hungate1963 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Ruminococcus albus | 1963 |
Hungate R.E. |
Polysaccharide Storage and Growth Efficiency in Ruminococcus Albus. | Journal of Bacteriology | 86(4), page(s): 848-854 | 10.1128/jb.86.4.848-854.1963 |
| Shouche2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Selenomonas ruminantium, Selenomonas noxia, Selenomonas sputigena | 2011 |
Yogesh S. Shouche, Abhijit S. Dighe, Dhiraj P. Dhotre, Milind S. Patole and Dilip R. Ranade |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Veillonellaceae, Genus XXI. Selenomonas | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1106-1112 | 10.1007/b92997 |
| Kageyama2011Bergey | summary, general characteristics, acid from carbohydrates, metabolites | Solobacterium moorei | 2011 |
Akiko Kageyama and Yoshimi Benno |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Erysipelotrichaceae, Genus VII. Solobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1312-1314 | 10.1007/b92997 |
| Editorial2011fBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sporosarcina koreensis | 2011 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Planococcaceae, Genus VIII. Sporosarcina | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 377-380 | 10.1007/b92997 |
| Holmstrom2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Subdoligranulum variabile | 2011 |
Kim Holmstrom and Paul A. Lawson |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Ruminococcaceae, Genus XI. Subdoligranulum | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1037-1041 | 10.1007/b92997 |
| Dicks2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Tetragenococcus solitarius, Tetragenococcus halophilus | 2011 |
Leon M.T. Dicks, Wilhelm. H. Holzapfel, Masataka Satomi, Bon Kimura and Tateo Fujii |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Enterococcaceae, Genus III. Tetragenococcus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 611-616 | 10.1007/b92997 |
| Shah2011Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Tissierella creatinophila, Tissierella praeacuta | 2011 |
Haroun N. Shah and John V. Hookey |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Clostridiales, Family XI. Incertae Sedis, Genus X. Tissierella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1146-1147 | 10.1007/b92997 |
| Bosshard2011Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Turicibacter sanguinis | 2011 |
Philipp P. Bosshard |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Erysipelotrichaceae, Genus VIII. Turicibacter | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1314-1315 | 10.1007/b92997 |
| Fritze2011aBergey | summary, general characteristics, metabolites | Ureibacillus suwonensis, Ureibacillus thermosphaericus | 2011 |
Dagmar Fritze and Paul De Vos |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Planococcaceae, Genus IX. Ureibacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 381-382 | 10.1007/b92997 |
| Kononen2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Alistipes finegoldii, Alistipes onderdonkii, Alistipes putredinis, Alistipes shahii | 2010 |
Eija Kononen, Yuli Song, Merja Rautio And Sydney M. Finegold |
Bergey's manual of systematic bacteriology. Vol. 4, The Bacteroidetes. Family Rikenellaceae, Genus II. Alistipes | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 56-61 | 10.1007/978-0-387-68572-4 |
| Editorial2011gBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Barnesiella viscericola, Barnesiella viscericola-like bacteria | 2010 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Porphyromonadaceae, Genus II. Barnesiella | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 70-71 | 10.1007/978-0-387-68572-4 |
| Baron2005Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Bilophila wadsworthia | 2005 |
Ellen Jo Baron |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Desulfovibrionaceae, Genus II. Bilophila | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2, page(s): 938-940 | ISBN-13: 978-0387-24145-6 |
| Holt2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Capnocytophaga granulosa, Capnocytophaga ochracea, Capnocytophaga sputigena | 2010 |
Stanley C. Holt |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Flavobacteriaceae, Genus VIII. Capnocytophaga | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 168 | 10.1007/978-0-387-68572-4 |
| Bernardet2010Bergey | summary, general characteristics | Chryseobacterium hominis, Chryseobacterium oranimense | 2010 |
Jean-Francois Bernardet, Celia J. Hugo and Brita Bruun |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Flavobacteriaceae, Genus X. Chryseobacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 180-196 | 10.1007/978-0-387-68572-4 |
| Editorial2010aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cloacibacterium normanense | 2010 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Flavobacteriaceae, Genus XI. Cloacibacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 197 | 10.1007/978-0-387-68572-4 |
| Reddy2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Dyadobacter beijingensis, Dyadobacter fermentans | 2010 |
Gundlapally S. N. Reddy and Ferran Garcia-Pichel |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Cytophagaceae, Genus IV. Dyadobacter | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 380-387 | 10.1007/978-0-387-68572-4 |
| Olsen2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Dysgonomonas gadei | 2010 |
Ingar Olsen |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Porphyromonaceae, Genus III. Dysgonomonas | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 71-76 | 10.1007/978-0-387-68572-4 |
| Bruun2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Elizabethkingia meningoseptica | 2010 |
Brita Bruun and Jean-Francois Bernardet |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Flavobacteriaceae, Genus XVII. Elizabethkingia | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 202-210 | 10.1007/978-0-387-68572-4 |
| Kampfer2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Wautersiella falsenii | 2010 |
Peter Kampfer |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Flavobacteriaceae, Genus LVI. Wautersiella | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 285-286 | 10.1007/978-0-387-68572-4 |
| Oren2020 | taxonomy | Ezakiella coagulans | 2020 |
Oren, Aharon and Garrity, George M. |
List of new names and new combinations previously effectively, but not validly, published | International Journal of Systematic and Evolutionary Microbiology | 70(5), page(s): 2960-2966 | 10.1099/ijsem.0.004156 |
| Buczolits2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Hymenobacter rigui | 2010 |
Sandra Buczolits and Hans-Jurgen Busse |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Cytophagaceae, Genus IX. Hymenobacter | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 397-404 | 10.1007/978-0-387-68572-4 |
| Hafez2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Ornithobacterium rhinotracheale | 2010 |
Hafez M. Hafez and Peter Vandamme |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Flavobacteriaceae, Genus XXXIX. Ornithobacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 250-254 | 10.1007/978-0-387-68572-4 |
| Summanen2010Bergey | summary, general characteristics, enzymes, metabolites, antibiotics | Porphyromonas asaccharolytica, Porphyromonas endodontalis, Porphyromonas gingivalis, Porphyromonas somerae, Porphyromonas uenonis | 2010 |
Paula Summanen and Sydney M. Finegold |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Porphyromonadaceae, Genus I. Porphyromonas | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 62-70 | 10.1007/978-0-387-68572-4 |
| Editorial2010bBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Sphingobacterium faecium, Sphingobacterium multivorum | 2010 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Sphingobacteriaceae, Genus I. Sphingobacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 331-339 | 10.1007/978-0-387-68572-4 |
| Editorial2010cBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Spirosoma linguale | 2010 |
Editorial Board |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Cytophagaceae, Genus XVI. Spirosoma | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 415-417 | 10.1007/978-0-387-68572-4 |
| Stanton2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Brachyspira aalborgi, Brachyspira pilosicoli, Brachyspira hyodysenteriae | 2010 |
Thaddeus B. Stanton |
Bergey's manual of systematic bacteriology. Vol. 4, The Spirochetes. Family Brachyspiraceae, Genus I. Brachyspira | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 531-541 | 10.1007/978-0-387-68572-4 |
| Norris2010Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Treponema berlinense, Treponema succinifaciens, Treponema vincentii, Treponema denticola | 2010 |
Steven J. Norris, Bruce J. Paster and Robert M. Smibert |
Bergey's manual of systematic bacteriology. Vol. 4, The Spirochetes. Family Spirochaetaceae, Genus IV. Treponema | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 501-523 | 10.1007/978-0-387-68572-4 |
| Derrien2010Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Victivallis vadensis | 2010 |
Muriel Derrien, Caroline M. Plugge, Willem M. de Vos and Erwi n G. Zoetendal |
Bergey's manual of systematic bacteriology. Vol. 4, The Lentisphaerae. Family Victivallaceae, Genus I. Victivallis | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 791 | 10.1007/978-0-387-68572-4 |
| Ward2010Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Planctomyces brasiliensis | 2010 |
Naomi L. Ward, James T. Staley and Jean M. Schmidt |
Bergey's manual of systematic bacteriology. Vol. 4, The Planctomycetes. Family Planctomycetaceae, Genus I. Planctomyces | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 881-895 | 10.1007/978-0-387-68572-4 |
| Dedysh2010Bergey | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Schlesneria paludicola | 2010 |
Svetlana N. Dedysh, Irina S. Kulichevskaya and George A. Zavarzin |
Bergey's manual of systematic bacteriology. Vol. 4, The Planctomycetes. Family Planctomycetaceae, Genus VII. Schlesneria | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 910-913 | 10.1007/978-0-387-68572-4 |
| Brown2010Bergey | summary, general characteristics, enzymes, utilisation | Mycoplasma hominis, Mycoplasma pneumoniae | 2010 |
Daniel R. Brown, Meghan May, Janet M. Bradbury, Mitchell F. Balish, Michael J. Calcutt, John I. Glass, Severine Tasker, Joanne B. Messick, Karl-Erik Johansson and Harold Neimark |
Bergey's manual of systematic bacteriology. Vol. 4, The Tenericutes. Family Mycoplasmataceae, Genus I. Mycoplasma | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 575-612 | 10.1007/978-0-387-68572-4 |
| Brown2010aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Anaeroplasma abactoclasticum, Anaeroplasma abactoclasticum-like bacteria | 2010 |
Daniel R. Brown, Janet M. Bradbury and Karl-Erik Johansson |
Bergey's manual of systematic bacteriology. Vol. 4, The Tenericutes. Family Anaeroplasmataceae, Genus I. Anaeroplasma | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 720-722 | 10.1007/978-0-387-68572-4 |
| Derrien2010aBergey | summary, general characteristics, metabolites, utilisation | Akkermansia muciniphila | 2010 |
Muriel Derrien, Caroline M. Plugge, Willem M. de Vos and Erwi n G. Zoetandal |
Bergey's manual of systematic bacteriology. Vol. 4, The Verrucomicrobia. Family Akkermansiaceae, Genus I. Akkermansia | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 809-811 | 10.1007/978-0-387-68572-4 |
| Edwards2010Bergey | summary, general characteristics, enzymes, metabolites, antibiotics | Cetobacterium somerae | 2010 |
Kirstin J. Edwards, Julie M. J. Logan and Saheer E. Gharbia |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Fusobacteriaceae, Genus II. Cetobacterium | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 758-759 | 10.1007/978-0-387-68572-4 |
| Edwards2010aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Leptotrichia buccalis | 2010 |
Kirstin J. Edwards and Saheer E. Gharbia |
Bergey's manual of systematic bacteriology. Vol. 4, The Fusobacteria. Family Leptotrichiaceae, Genus I. Leptotrichia | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 766-769 | 10.1007/978-0-387-68572-4 |
| Kato2004 | summary, general characteristics, metabolites, utilisation | Clostridium straminisolvens | 2004 |
Kato S, Haruta S, Cui ZJ, Ishii M, Yokota A, Igarashi Y. |
Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2043-2047. | 10.1099/ijs.0.63148-0 |
| Rogers1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Clostridium xylanolyticum | 1991 |
Rogers, G.M. and Baecker, A.A.W. |
Clostridium xylanolyticum sp. nov., an Anaerobic Xylanolytic Bacterium from Decayed Pinus patula Wood Chips | International Journal of Systematic and Evolutionary Microbiology | 41(1), page(s): 140-143 | 10.1099/00207713-41-1-140 |
| Yang1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium aldrichii | 1990 |
Yang JC, Chynoweth DP, Williams DS, Li A. |
Clostridium aldrichii sp. nov., a cellulolytic mesophile inhabiting a wood-fermenting anaerobic digester. | International Journal of Systematic Bacteriology | 40(3), page(s): 268-272 | 10.1099/00207713-40-3-268 |
| Prokofeva2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Acidilobus aceticus-like archaea | 2000 |
Prokofeva MI, Miroshnichenko ML, Kostrikina NA, Chernyh NA, Kuznetsov BB, Tourova TP, Bonch-Osmolovskaya EA. |
Acidilobus aceticus gen. nov., sp. nov., a novel anaerobic thermoacidophilic archaeon from continental hot vents in Kamchatka. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 6), page(s): 2001-2008 | 10.1099/00207713-50-6-2001 |
| Mohagheghi1986 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Acidothermus cellulolyticus-like bacteria | 1986 |
Mohagheghi, A.; Grohmann, K.; Himmel, M.; Leighton, L. and Updegraff, D. M. |
Isolation and Characterization of Acidothermus cellulolyticus gen. nov., sp. nov., a New Genus of Thermophilic, Acidophilic, Cellulolytic Bacteria | International Journal of Systematic and Evolutionary Microbiology | 36(3), page(s): 435-443 | 10.1099/00207713-36-3-435 |
| Krumholz2004 | summary, general characteristics, metabolites, utilisation | Eubacterium oxidoreducens, Eubacterium oxidoreducens-like bacteria | 2004 |
Lee R. Krumholz and Marvin P. Bryant |
Eubacterium oxidoreducens sp. nov. requiring H2 or formate to degrade gallate, pyrogallol, phloroglucinol and quercetin | Archives of Microbiology | 144, page(s): 8-14 | 10.1007/BF00454948 |
| Wilkins1974 | summary, general characteristics, acid from carbohydrates, metabolites | Eubacterium plexicaudatum, Eubacterium plexicaudatum-like bacteria | 1974 |
Wilkins, Tracy D. and Fulghum, R. S. and Wilkins, J. H. |
Eubacterium plexicaudatum sp. nov., an Anaerobic Bacterium with a Subpolar Tuft of Flagella, Isolated from a Mouse Cecum | International Journal of Systematic and Evolutionary Microbiology | 24(4), page(s): 408-411 | 10.1099/00207713-24-4-408 |
| Maune2012 | summary, general characteristics, metabolites, utilisation, quirks | Acetomicrobium hydrogeniformans | 2012 |
Maune MW, Tanner RS. |
Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 4), page(s): 832-838 | 10.1099/ijs.0.024349-0 |
| Hania2016 | summary, general characteristics, genetics, taxonomy | Acetomicrobium hydrogeniformans | 2016 |
Hania WB, Bouanane-Darenfed A, Cayol JL, Ollivier B, Fardeau ML. |
Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium. | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1506-1509 | 10.1099/ijsem.0.000910 |
| Vaneechoutte2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Acidovorax wautersii | 2016 |
Vaneechoutte M, Janssens M, Avesani V, Delmée M, Deschaght P. |
Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 6), page(s): 2203-2206 | 10.1099/ijs.0.046102-0 |
| Brenner1991 | summary, general characteristics, enzymes, metabolites, antibiotics | Afipia felis, Afipia clevelandensis, Afipia broomeae | 1991 |
Brenner DJ, Hollis DG, Moss CW, English CK, Hall GS, Vincent J, Radosevic J, Birkness KA, Bibb WF, Quinn FD, et al. |
Proposal of Afipia gen. nov., with Afipia felis sp. nov. (formerly the cat scratch disease bacillus), Afipia clevelandensis sp. nov. (formerly the Cleveland Clinic Foundation strain), Afipia broomeae sp. nov., and three unnamed genospecies. | Journal of Clinical Microbiology | 29(11), page(s): 2450-2460 | 10.1128/jcm.29.11.2450-2460.1991 |
| Huys2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Alloscardovia omnicolens | 2007 |
Huys G, Vancanneyt M, D'Haene K, Falsen E, Wauters G, Vandamme P. |
Alloscardovia omnicolens gen. nov., sp. nov., from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 7), page(s): 1442-1446 | 10.1099/ijs.0.64812-0 |
| Song2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Anaerococcus murdochii, Peptoniphilus gorbachii, Peptoniphilus olsenii | 2007 |
Song Y, Liu C, Finegold SM. |
Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin. | Journal of Clinical Microbiology | 45(6), page(s): 1746-1752 | 10.1128/JCM.00213-07 |
| Rohwerder2006 | butyrate | Aquincola tertiaricarbonis | 2006 |
Rohwerder T, Breuer U, Benndorf D, Lechner U, Müller RH. |
The alkyl tert-butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway. | Applied and Environmental Microbiology | 72(6), page(s): 4128-4135 | 10.1128/AEM.00080-06 |
| Lechner2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aquincola tertiaricarbonis | 2007 |
Lechner U, Brodkorb D, Geyer R, Hause G, Härtig C, Auling G, Fayolle-Guichard F, Piveteau P, Müller RH, Rohwerder T. |
Aquincola tertiaricarbonis gen. nov., sp. nov., a tertiary butyl moiety-degrading bacterium. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 6), page(s): 1295-1303 | 10.1099/ijs.0.64663-0 |
| Rathsack2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aureimonas ureilytica, Aureimonas altamirensis, Aureimonas frigidaquae | 2011 |
Rathsack K, Reitner J, Stackebrandt E, Tindall BJ. |
Reclassification of Aurantimonas altamirensis (Jurado et al. 2006), Aurantimonas ureilytica (Weon et al. 2007) and Aurantimonas frigidaquae (Kim et al. 2008) as members of a new genus, Aureimonas gen. nov., as Aureimonas altamirensis gen. nov., comb. nov., Aureimonas ureilytica comb. nov. and Aureimonas frigidaquae comb. nov., and emended descriptions of the genera Aurantimonas and Fulvimarina. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 11), page(s): 2722-2728 | 10.1099/ijs.0.027029-0 |
| Weon2007a | summary, general characteristics, enzymes, metabolites, utilisation | Aurantimonas ureilytica | 2007 |
Weon HY, Kim BY, Yoo SH, Joa JH, Lee KH, Zhang YS, Kwon SW, Koo BS. |
Aurantimonas ureilytica sp. nov., isolated from an air sample. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 8), page(s): 1717-1720 | 10.1099/ijs.0.65035-0 |
| Nakamura1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus smithii, Bacillus coagulans | 1988 |
Nakamura, Lawrence K.; Blumenstock, Inge and Claus, Dieter |
Taxonomic Study of Bacillus coagulans Hammer 1915 with a Proposal for Bacillus smithii sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 38(1), page(s): 63-73 | 10.1099/00207713-38-1-63 |
| Miyamoto2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides acidifaciens | 2000 |
Miyamoto Y, Itoh K. |
Bacteroides acidifaciens sp. nov., isolated from the caecum of mice. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 1), page(s): 145-148 | 10.1099/00207713-50-1-145 |
| Kitahara2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides stercorirosoris, Bacteroides faecichinchillae | 2012 |
Kitahara M, Sakamoto M, Tsuchida S, Kawasumi K, Amao H, Benno Y, Ohkuma M. |
Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 5), page(s): 1145-1150 | 10.1099/ijs.0.032706-0 |
| Lee2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Belnapia soli | 2013 |
Jin L, Lee HG, No KJ, Ko SR, Kim HS, Ahn CY, Oh HM. |
Belnapia soli sp. nov., a proteobacterium isolated from grass soil. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 6), page(s): 1955-1959 | 10.1099/ijs.0.045302-0 |
| LaScola2003 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, water source | Bosea eneae, Bosea massiliensis, Bosea vestrisii | 2003 |
La Scola B, Mallet MN, Grimont PAD, Raoult D. |
Bosea eneae sp. nov., Bosea massiliensis sp. nov. and Bosea vestrisii sp. nov., isolated from hospital water supplies, and emendation of the genus Bosea (Das et al. 1996). | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 15-20 | 10.1099/ijs.0.02127-0 |
| Hoang2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Brachybacterium ginsengisoli | 2014 |
Hoang VA, Kim YJ, Nguyen NL, Yang DC. |
Brachybacterium ginsengisoli sp. nov., isolated from soil of a ginseng field. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 9), page(s): 3063-3068 | 10.1099/ijs.0.058388-0 |
| Duran2014 | summary, general characteristics, antibiotics, utilisation | Bradyrhizobium icense, Bradyrhizobium paxllaeri | 2014 |
Durán D, Rey L, Mayo J, Zúñiga-Dávila D, Imperial J, Ruiz-Argüeso T, Martínez-Romero E, Ormeño-Orrillo E. |
Bradyrhizobium paxllaeri sp. nov. and Bradyrhizobium icense sp. nov., nitrogen-fixing rhizobial symbionts of Lima bean (Phaseolus lunatus L.) in Peru. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 6), page(s): 2072-2078 | 10.1099/ijs.0.060426-0 |
| OrmenoOrillo2018 | food source | Bradyrhizobium icense | 2018 |
Ormeño-Orrillo E, Rogel MA, Zúñiga-Dávila D, Martínez-Romero E. |
Complete Genome Sequence of the Symbiotic Strain Bradyrhizobium icense LMTR 13T, Isolated from Lima Bean (Phaseolus lunatus) in Peru. | Genome Announcements | 6(10), page(s): e00146-18 | 10.1128/genomeA.00146-18 |
| Zilli2014 | summary, general characteristics, enzymes, antibiotics, utilisation | Bradyrhizobium neotropicale | 2014 |
Zilli JE, Baraúna AC, da Silva K, De Meyer SE, Farias ENC, Kaminski PE, da Costa IB, Ardley JK, Willems A, Camacho NN, Dourado FDS, O'Hara G. |
Bradyrhizobium neotropicale sp. nov., isolated from effective nodules of Centrolobium paraense. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 12), page(s): 3950-3957 | 10.1099/ijs.0.065458-0 |
| Lee2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brevibacterium samyangense | 2006 |
Lee SD. |
Brevibacterium samyangense sp. nov., an actinomycete isolated from a beach sediment. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 8), page(s): 1889-1892 | 10.1099/ijs.0.64269-0 |
| Kang2009 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Brevundimonas naejangsanensis, Brevundimonas bullata | 2009 |
Kang SJ, Choi NS, Choi JH, Lee JS, Yoon JH, Song JJ. |
Brevundimonas naejangsanensis sp. nov., a proteolytic bacterium isolated from soil, and reclassification of Mycoplana bullata into the genus Brevundimonas as Brevundimonas bullata comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 12), page(s): 3155-3160 | 10.1099/ijs.0.011700-0 |
| Urakami1990 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Mycoplana ramosa, Mycoplana segnis, Mycoplana bullata | 1990 |
Urakami, Teizi; Oyanagi, Hiromi; Araki, Hisaya; Suzuki, Ken-Ichiro and Komagata, Kazuo |
Recharacterization and Emended Description of the Genus Mycoplana and Description of Two New Species, Mycoplana ramosa and Mycoplana segnis | International Journal of Systematic and Evolutionary Microbiology | 40(4), page(s): 434-442 | 10.1099/00207713-40-4-434 |
| Slotnick1964 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Cardiobacterium Hominis | 1964 |
Slotnick IJ, Dougherty M. |
Further Characterization of an Unclassified Group of Bacteria Causing Endocarditis in Man: Cardiobacterium Hominis gen. et sp. n. | Antonie van Leeuwenhoek | 30, page(s): 261-272 | 10.1007/BF02046732 |
| Joborn1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Carnobacterium inhibens | 1999 |
Jöborn A, Dorsch M, Olsson JC, Westerdahl A, Kjelleberg S. |
Carnobacterium inhibens sp. nov., isolated from the intestine of Atlantic salmon (Salmo salar). | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 4), page(s): 1891-1898 | 10.1099/00207713-49-4-1891 |
| Nicholson2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Carnobacterium inhibens, Carnobacterium inhibens subsp. gilichinskyi | 2015 |
Nicholson WL, Zhalnina K, de Oliveira RR, Triplett EW. |
Proposal to rename Carnobacterium inhibens as Carnobacterium inhibens subsp. inhibens subsp. nov. and description of Carnobacterium inhibens subsp. gilichinskyi subsp. nov., a psychrotolerant bacterium isolated from Siberian permafrost. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 2), page(s): 556-561 | 10.1099/ijs.0.067983-0 |
| Raj2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Chryseomicrobium amylolyticum | 2013 |
Raj PS, Sasikala C, Ramaprasad EVV, Subhash Y, Busse HJ, Schumann P, Ramana CV. |
Chryseomicrobium amylolyticum sp. nov., isolated from a semi-arid tropical soil, and emended descriptions of the genus Chryseomicrobium and Chryseomicrobium imtechense. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 7), page(s): 2612-2617 | 10.1099/ijs.0.044552-0 |
| Looft2013 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Cloacibacillus porcorum | 2013 |
Looft T, Levine UY, Stanton TB. |
Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 6), page(s): 1960-1966 | 10.1099/ijs.0.044719-0 |
| Siunov1999 | summary, general characteristics, genetics, taxonomy, image | Anaerobacter polyendosporus | 1999 |
Siunov AV, Nikitin DV, Suzina NE, Dmitriev VV, Kuzmin NP, Duda VI. |
Phylogenetic status of Anaerobacter polyendosporus, an anaerobic, polysporogenic bacterium. | International Journal of Systematic and Evolutionary Microbiology | 49(3), page(s): 1119-1124 | 10.1099/00207713-49-3-1119 |
| Duda1987 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Anaerobacter polyendosporus | 1987 |
V. I. Duda, A. V. Lebedinsky, M. S. Mushegjan, and L. L. Mitjushina |
A new anaerobic bacterium, forming up to five endospores per cell - Anaerobacter polyendosporus gen. et spec. nov. | Archives of Microbiology | 148, page(s): 121-127 | 10.1007/BF00425359 |
| Gumaelius2001 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Comamonas denitrificans | 2001 |
Gumaelius L, Magnusson G, Pettersson B, Dalhammar G. |
Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 999-1006 | 10.1099/00207713-51-3-999 |
| Ehrmann2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus mindensis | 2003 |
Ehrmann MA, Müller MRA, Vogel RF. |
Molecular analysis of sourdough reveals Lactobacillus mindensis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 7-13 | 10.1099/ijs.0.02202-0 |
| Chen2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Deinococcus reticulitermitis | 2012 |
Chen W, Wang B, Hong H, Yang H, Liu SJ. |
Deinococcus reticulitermitis sp. nov., isolated from a termite gut. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 1), page(s): 78-83 | 10.1099/ijs.0.026567-0 |
| Hong2015 | summary, general characteristics, enzymes, metabolites, utilisation | Deinococcus wulumuqiensis | 2015 |
Hong S, Farrance CE, Russell A, Yi H. |
Reclassification of Deinococcus xibeiensis Wang et al. 2010 as a heterotypic synonym of Deinococcus wulumuqiensis Wang et al. 2010. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 3), page(s): 1083-1085 | 10.1099/ijs.0.000058 |
| Wang2010 | summary, general characteristics, enzymes, metabolites, utilisation | Deinococcus wulumuqiensis | 2010 |
Wang W, Mao J, Zhang Z, Tang Q, Xie Y, Zhu J, Zhang L, Liu Z, Shi Y, Goodfellow M. |
Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 9), page(s): 2006-2010 | 10.1099/ijs.0.015917-0 |
| Steinhaus1941 | summary, general characteristics | Desemzia incerta | 1941 |
Steinhaus EA. |
A Study of the Bacteria Associated with Thirty Species of Insects. | Journal of Bacteriology | 42(6), page(s): 757-790 | 10.1128/jb.42.6.757-790.1941 |
| Stackebrandt1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Desemzia incerta | 1999 |
Stackebrandt E, Schumann P, Swiderski J, Weiss N. |
Reclassification of Brevibacterium incertum (Breed 1953) as Desemzia incerta gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 1), page(s): 185-188 | 10.1099/00207713-49-1-185 |
| Thabet2011 | summary, general characteristics, metabolites, antibiotics, utilisation | Desulfovibrio legallii | 2011 |
Thabet OB, Wafa T, Eltaief K, Cayol JL, Hamdi M, Fauque G, Fardeau ML. |
Desulfovibrio legallis sp. nov.: a moderately halophilic, sulfate-reducing bacterium isolated from a wastewater digestor in Tunisia. | Current Microbiology | 62(2), page(s): 486-491 | 10.1007/s00284-010-9733-z |
| Kumar2008 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Devosia chinhatensis, Devosia limi, Devosia riboflavina | 2008 |
Kumar M, Verma M, Lal R. |
Devosia chinhatensis sp. nov., isolated from a hexachlorocyclohexane (HCH) dump site in India. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 4), page(s): 861-865 | 10.1099/ijs.0.65574-0 |
| Vanparys2005 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Devosia limi, Devosia riboflavina | 2005 |
Vanparys B, Heylen K, Lebbe L, De Vos P. |
Devosia limi sp. nov., isolated from a nitrifying inoculum. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1997-2000 | 10.1099/ijs.0.63714-0 |
| Nakagawa1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Devosia riboflavina | 1996 |
Nakagawa Y, Sakane T, Yokota A. |
Transfer of "Pseudomonas riboflavina" (Foster 1944), a gram-negative, motile rod with long-chain 3-hydroxy fatty acids, to Devosia riboflavina gen. nov., sp. nov., nom. rev. | International Journal of Systematic and Evolutionary Microbiology | 46(1), page(s): 16-22 | 10.1099/00207713-46-1-16 |
| Foster1944 | summary, metabolites | Pseudomonas riboflavina | 1944 |
Foster JW. |
Microbiological Aspects of Riboflavin: III. Oxidation Studies with Pseudomonas riboflavina. | Journal of Bacteriology | 48(1), page(s): 97-111 | 10.1128/jb.48.1.97-111.1944 |
| Lawson2002 | summary, general characteristics, enzymes, acid from carbohydrates | Dysgonomonas mossii | 2002 |
Lawson PA, Falsen E, Inganäs E, Weyant RS, Collins MD. |
Dysgonomonas mossii sp. nov., from human sources. | Systematic and Applied Microbiology | 25(2), page(s): 194-197 | 10.1078/0723-2020-00107 |
| Staley1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enhydrobacter aerosaccus | 1987 |
Staley, James T. and Irgens, Roar L. and Brenner, Don J. |
Enhydrobacter aerosaccus gen. nov., sp. nov., a Gas-Vacuolated, Facultatively Anaerobic, Heterotrophic Rod | International Journal of Systematic and Evolutionary Microbiology | 37(3), page(s): 289-291 | 10.1099/00207713-37-3-289 |
| Kawamura2012 | summary | Enhydrobacter aerosaccus | 2012 |
Kawamura Y, Fujiwara N, Naka T, Mitani A, Kubota H, Tomida J, Morita Y, Hitomi J. |
Genus Enhydrobacter Staley et al. 1987 should be recognized as a member of the family Rhodospirillaceae within the class Alphaproteobacteria. | Microbiology and Immunology | 56(1), page(s): 21-26 | 10.1111/j.1348-0421.2011.00401.x |
| Young2003 | summary, general characteristics | Ensifer adhaerens | 2003 |
Young JM. |
The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination "Sinorhizobium adhaerens" (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 6), page(s): 2107-2110 | 10.1099/ijs.0.02665-0 |
| Willems2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Ensifer adhaerens | 2003 |
Willems A, Fernández-López M, Muñoz-Adelantado E, Goris J, De Vos P, Martínez-Romero E, Toro N, Gillis M. |
Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an opinion. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 1207-1217 | 10.1099/ijs.0.02264-0 |
| Wang2013 | summary, general characteristics, enzymes, utilisation | Ensifer adhaerens | 2013 |
Wang YC, Wang F, Hou BC, Wang ET, Chen WF, Sui XH, Chen WX, Li Y, Zhang YB. |
Proposal of Ensifer psoraleae sp. nov., Ensifer sesbaniae sp. nov., Ensifer morelense comb. nov. and Ensifer americanum comb. nov. | Systematic and Applied Microbiology | 36(7), page(s): 467-473 | 10.1016/j.syapm.2013.05.001 |
| Wang2002 | Ensifer adhaerens, Sinorhizobium morelense | 2002 |
Wang ET, Tan ZY, Willems A, Fernández-López M, Reinhold-Hurek B, Martínez-Romero E. |
Sinorhizobium morelense sp. nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 2), page(s): 1687-1693 | 10.1099/00207713-52-5-1687 | |
| Martens2007 | genetics, taxonomy | Ensifer adhaerens | 2007 |
Martens M, Delaere M, Coopman R, De Vos P, Gillis M, Willems A. |
Multilocus sequence analysis of Ensifer and related taxa. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 3), page(s): 489-503 | 10.1099/ijs.0.64344-0 |
| Casida1982 | summary, general characteristics, enzymes, utilisation | Ensifer adhaerens | 1982 |
Casida, LE. |
Ensifer adhaerens gen. nov., sp. nov.: A Bacterial Predator of Bacteria in Soil. | International Journal of Systematic and Evolutionary Microbiology | 32(3), page(s): 339-345 | 10.1099/00207713-32-3-339 |
| Gu2014 | summary, general characteristics, acid from carbohydrates, antibiotics, fermented foods | Enterobacter xiangfangensis | 2014 |
Gu CT, Li CY, Yang LJ, Huo GC. |
Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 8), page(s): 2650-2656 | 10.1099/ijs.0.064709-0 |
| MartinezMurcia1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus sulfureus | 1991 |
Martinez-Murcia AJ, Collins MD. |
Enterococcus sulfureus, a new yellow-pigmented Enterococcus species. | FEMS Microbiology Letters | 64(1), page(s): 69-74 | 10.1016/0378-1097(91)90211-r |
| Freier1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Eubacterium coprostanoligenes | 1994 |
Freier TA, Beitz DC, Li L, Hartman PA. |
Characterization of Eubacterium coprostanoligenes sp. nov., a cholesterol-reducing anaerobe. | International Journal of Systematic and Evolutionary Microbiology | 44(1), page(s): 137-142 | 10.1099/00207713-44-1-137 |
| Cheeseman1996 | summary, acid from carbohydrates, metabolites, oral cavity | Eubacterium infirmum, Eubacterium tardum | 1996 |
Cheeseman SL, Hiom SJ, Weightman AJ, Wade WG. |
Phylogeny of oral asaccharolytic Eubacterium species determined by 16S ribosomal DNA sequence comparison and proposal of Eubacterium infirmum sp. nov. and Eubacterium tardum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(4), page(s): 957-959 | 10.1099/00207713-46-4-957 |
| vanGylswyk1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Eubacterium uniforme, Eubacterium xylanophilum | 1985 |
van Gylswyk, N.O. and Van der Toorn, J.J.T.K. |
Eubacterium uniforme sp. nov. and Eubacterium xylanophilum sp. nov., Fiber-Digesting Bacteria from the Rumina of Sheep Fed Corn Stover | International Journal of Systematic and Evolutionary Microbiology | 35(3), page(s): 323-326 | 10.1099/00207713-35-3-323 |
| Kim2005a | summary, general characteristics, enzymes, acid from carbohydrates | Exiguobacterium aestuarii, Exiguobacterium marinum | 2005 |
Kim IG, Lee MH, Jung SY, Song JJ, Oh TK, Yoon JH. |
Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 885-889 | 10.1099/ijs.0.63308-0 |
| Rodrigues2006 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Exiguobacterium sibiricum, Exiguobacterium undae | 2006 |
Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM. |
Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of sp. nov. | Extremophiles | 10(4), page(s): 285-294 | 10.1007/s00792-005-0497-5 |
| Fruhling2002 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Exiguobacterium undae, Exiguobacterium antarcticum | 2002 |
Frühling A, Schumann P, Hippe H, Sträubler B, Stackebrandt E. |
Exiguobacterium undae sp. nov. and Exiguobacterium antarcticum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 4), page(s): 1171-1176 | 10.1099/00207713-52-4-1171 |
| Rodriguez1999 | summary, general characteristics, enzymes, metabolites | Atopobium vaginae | 1999 |
Rodriguez Jovita M, Collins MD, Sjödén B, Falsen E. |
Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 4), page(s): 1573-1576 | 10.1099/00207713-49-4-1573 |
| Kline1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Fructilactobacillus sanfranciscensis | 1971 |
Kline L, Sugihara TF. |
Microorganisms of the San Francisco sour dough bread process. II. Isolation and characterization of undescribed bacterial species responsible for the souring activity. | Applied Microbiology | 21(3), page(s): 459-465 | 10.1128/am.21.3.459-465.1971. |
| Weiss1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus sanfrancisco, Lactobacillus sanfranciscensis | 1984 |
N. Weiss and U. Schillinger |
Lactobacillus sanfrancisco sp. nov., nom. rev. | Systematic and Applied Microbiology | 5(2), page(s): 230-232 | 10.1016/S0723-2020(84)80024-7 |
| Gharbia1992 | summary, general characteristics, enzymes, utilisation | Fusobacterium nucleatum subsp. fusiforme, Fusobacterium nucleatum subsp. animalis | 1992 |
Gharbia SE, Shah HN. |
Fusobacterium nucleatum subsp. fusiforme subsp. nov. and Fusobacterium nucleatum subsp. animalis subsp. nov. as additional subspecies within Fusobacterium nucleatum. | International Journal of Systematic and Evolutionary Microbiology | 42(2), page(s): 296-8 | 10.1099/00207713-42-2-296 |
| Kook2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Fusobacterium nucleatum subsp. animalis, Fusobacterium nucleatum subsp. nucleatum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. vincentii | 2017 |
Joong-Ki Kook, Soon-Nang Park, Yun Kyong Lim, Eugene Cho, Eojin Jo, Hansung Roh, Yeseul Shin, Jayoung Paek, Hwa-Sook Kim, Hongik Kim, Jeong Hwan Shin, Young-Hyo Chang |
Genome-Based Reclassification of Fusobacterium nucleatum Subspecies at the Species Level. | Current Microbiology | 74, page(s): 1137-1147 | 10.1007/s00284-017-1296-9 |
| Dzink1990 | summary, general characteristics, enzymes, metabolites | Fusobacterium nucleatum subsp. nucleatum, Fusobacterium nucleatum subsp. polymorphum, Fusobacterium nucleatum subsp. vincentii | 1990 |
Dzink JL, Sheenan MT, Socransky SS. |
Dzink JL, Sheenan MT, Socransky SS. Proposal of three subspecies of Fusobacterium nucleatum Knorr 1922: Fusobacterium nucleatum subsp. nucleatum subsp. nov., comb. nov.; Fusobacterium nucleatum subsp. polymorphum subsp. nov., nom. rev., comb. nov.; and Fusobacterium nucleatum subsp. vincentii subsp. nov., nom. rev., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 40(1), page(s): 74-78 | 10.1099/00207713-40-1-74 |
| Adriaans1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, ulcers | Fusobacterium ulcerans | 1988 |
Adriaans, Beverley and Shah, Haroun |
Fusobacterium ulcerans sp. nov. from Tropical Ulcers | International Journal of Systematic and Evolutionary Microbiology | 38(4), page(s): 447-448 | 10.1099/00207713-38-4-447 |
| UlgerToprak2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Gemella asaccharolytica | 2010 |
Ulger-Toprak N, Summanen PH, Liu C, Rowlinson MC, Finegold SM. |
Gemella asaccharolytica sp. nov., isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 5), page(s): 1023-1026 | 10.1099/ijs.0.001966-0 |
| Stackebrandt1983 | summary, general characteristics, utilisation | Arthrobacter protophormiae | 1983 |
Stackebrandt E, Fowler VJ, Fiedler F, Seiler H. |
Taxonomic Studies on Arthrobacter nicotianae and Related Taxa: Description of Arthrobacter uratoxydans sp. nov. and Arthrobacter sulfureus sp. nov. and Reclassification of Brevibacterium protophormiae as Arthrobacter protophormiae comb. nov. | Systematic and Applied Microbiology | 4(4), page(s): 470-486 | 10.1016/S0723-2020(83)80005-8 |
| NorskovLauritsen2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Haemophilus pittmaniae | 2005 |
Nørskov-Lauritsen N, Bruun B, Kilian M. |
Multilocus sequence phylogenetic study of the genus Haemophilus with description of Haemophilus pittmaniae sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 449-456 | 10.1099/ijs.0.63325-0 |
| Huys2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Hafnia paralvei | 2010 |
Huys G, Cnockaert M, Abbott SL, Janda JM, Vandamme P. |
Hafnia paralvei sp. nov., formerly known as Hafnia alvei hybridization group 2. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 8), page(s): 1725-1728 | 10.1099/ijs.0.018606-0 |
| Hanninen2005 | summary, general characteristics, enzymes | Helicobacter bilis | 2005 |
Hänninen ML, Kärenlampi RI, Koort JMK, Mikkonen T, Björkroth KJ. |
Extension of the species Helicobacter bilis to include the reference strains of Helicobacter sp. flexispira taxa 2, 3 and 8 and Finnish canine and feline flexispira strains. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 891-898 | 10.1099/ijs.0.63245-0 |
| Fox1995 | summary, general characteristics, enzymes, metabolites | Helicobacter bilis | 1995 |
Fox JG, Yan LL, Dewhirst FE, Paster BJ, Shames B, Murphy JC, Hayward A, Belcher JC, Mendes EN. |
Helicobacter bilis sp. nov., a novel Helicobacter species isolated from bile, livers, and intestines of aged, inbred mice. | Journal of Clinical Microbiology | 33(2), page(s): 445-454 | 10.1128/jcm.33.2.445-454.1995 |
| Rossi2010 | genetics, taxonomy | Helicobacter bilis | 2010 |
Rossi M, Zanoni RG, Hänninen ML. |
Delineation of two Helicobacter bilis genomospecies: implications for systematics and evolution. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 10), page(s): 2392-2397 | 10.1099/ijs.0.016287-0 |
| Stanley1993 | summary, general characteristics, enzymes, metabolites, antibiotics | Helicobacter canis | 1993 |
Stanley J, Linton D, Burnens AP, Dewhirst FE, Owen RJ, Porter A, On SL, Costas M. |
Helicobacter canis sp. nov., a new species from dogs: an integrated study of phenotype and genotype. | Journal of General Microbiology | 139(10), page(s): 2495-2504 | 10.1099/00221287-139-10-2495 |
| Fox2007 | summary, general characteristics, enzymes, antibiotics | Helicobacter macacae | 2007 |
Fox JG, Boutin SR, Handt LK, Taylor NS, Xu S, Rickman B, Marini RP, Dewhirst FE, Paster BJ, Motzel S, Klein HJ. |
Isolation and characterization of a novel helicobacter species, "Helicobacter macacae," from rhesus monkeys with and without chronic idiopathic colitis. | Journal of Clinical Microbiology | 45(12), page(s): 4061-4063 | 10.1128/JCM.01100-07 |
| Anzai2000 | taxonomy | Pseudomonas huttiensis, Sphingomonas echinoides, Pseudomonas boreopolis | 2000 |
Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H. |
Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 4), page(s): 1563-1589 | 10.1099/00207713-50-4-1563 |
| Leifson1962 | summary, general characteristics, enzymes, acid from carbohydrates, water source | Pseudomonas huttiensis, Flavobacterium capsulatum | 1962 |
Einar Leifson |
The Bacterial Flora of Distilled and Stored Water. III. new species of the genera Corynebacterium, Flavobacterium, Spirillum and Pseudomonas | International Journal of Systematic and Evolutionary Microbiology | 12(4), page(s): 161-170 | 10.1099/0096266X-12-4-161 |
| Ding2004 | water source | Curvibacter gracilis, Herbaspirillum putei, Herbaspirillum huttiense, Curvibacter lanceolatus, Curvibacter delicatus, Herbaspirillum autotrophicum | 2004 |
Ding L, Yokota A. |
Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis, [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum] autotrophicum as Herbaspirillum huttiense comb. nov., Curvibacter lanceolatus comb. nov., Curvibacter delicatus comb. nov. and Herbaspirillum autotrophicum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2223-2230 | 10.1099/ijs.0.02975-0 |
| Dobritsa2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Herbaspirillum huttiense | 2010 |
Dobritsa AP, Reddy MCS, Samadpour M. |
Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 6), page(s): 1418-1426 | 10.1099/ijs.0.009381-0 |
| Kampfer2013a | summary, general characteristics, enzymes, utilisation | Herminiimonas contaminans | 2013 |
Kämpfer P, P Glaeser S, Lodders N, Busse HJ, Falsen E. |
Herminiimonas contaminans sp. nov., isolated as a contaminant of biopharmaceuticals. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 2), page(s): 412-417 | 10.1099/ijs.0.039073-0 |
| Kampfer2006 | summary, general characteristics, utilisation | Janibacter anophelis | 2006 |
Kämpfer P, Terenius O, Lindh JM, Faye I. |
Janibacter anophelis sp. nov., isolated from the midgut of Anopheles arabiensis. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 2), page(s): 389-392 | 10.1099/ijs.0.63905-0 |
| Muller1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Buttiauxella agrestis, Buttiauxella ferragutiae, Buttiauxella gaviniae, Buttiauxella brennerae, Buttiauxella izardii, Buttiauxella noackiae, Buttiauxella warmboldiae, Kluyvera cochleae, Kluyvera georgiana | 1996 |
Müller HE, Brenner DJ, Fanning GR, Grimont PA, Kämpfer P. |
Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(1), page(s): 50-63 | 10.1099/00207713-46-1-50 |
| Yun2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, fermented foods | Kocuria salsicia | 2011 |
Yun JH, Roh SW, Jung MJ, Kim MS, Park EJ, Shin KS, Nam YD, Bae JW. |
Kocuria salsicia sp. nov., isolated from salt-fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 2), page(s): 286-289 | 10.1099/ijs.0.021469-0 |
| Gu2012 | summary, general characteristics, acid from carbohydrates, fermented foods | Lactobacillus xiangfangensis | 2012 |
Gu CT, Wang F, Li CY, Liu F, Huo GC. |
Lactobacillus xiangfangensis sp. nov., isolated from Chinese pickle. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 4), page(s): 860-863 | 10.1099/ijs.0.031468-0 |
| Bohak1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus amylolyticus | 1998 |
Bohak I, Back W, Richter L, Ehrmann M, Ludwig W, Schleifer KH. |
Lactobacillus amylolyticus sp. nov., isolated from beer malt and beer wort. | Systematic and Applied Microbiology | 21(3), page(s): 360-364 | 10.1016/S0723-2020(98)80045-3 |
| Fujisawa1990 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus intestinalis | 1990 |
Fujisawa T, Itoh K, Benno Y, Mitsuoka T. |
Lactobacillus intestinalis (ex Hemme 1974) sp. nov., nom. rev., isolated from the intestines of mice and rats. | International Journal of Systematic and Evolutionary Microbiology | 40(3), page(s): 302-304 | 10.1099/00207713-40-3-302 |
| Sohier1999 | genetics, taxonomy | Lactobacillus hilgardii, Lactobacillus brevis | 1999 |
Sohier D, Coulon J, Lonvaud-Funel A. |
Molecular identification of Lactobacillus hilgardii and genetic relatedness with Lactobacillus brevis. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 3), page(s): 1075-1081 | 10.1099/00207713-49-3-1075 |
| Morais2004 | summary, general characteristics, enzymes, metabolites, utilisation | Leucobacter chromiireducens, Leucobacter aridicollis | 2004 |
Morais PV, Francisco R, Branco R, Chung AP, da Costa MS. |
Leucobacter chromiireducens sp. nov, and Leucobacter aridicollis sp. nov., two new species isolated from a chromium contaminated environment. | Systematic and Applied Microbiology | 27(6), page(s): 646-652 | 10.1078/0723202042369983 |
| Hemme1980 | summary, general characteristics | Lactobacillus murinus | 1980 |
Hemme D, Raibaud P, Ducluzeau R, Galpin JV, Sicard P, Van Heijenoort J. |
Lactobacillus murinus N. Sp., une nouvelle espèce de la flore dominante autochtone du tube digestif du rat et de la souris ["Lactobacillus murinus" n. sp., a new species of the autochtoneous dominant flora of the digestive tract of rat and mouse (author's transl)]. | Annales de Microbiologie | 131(3), page(s): 297-308 | 7425453 PMID |
| Kampfer2011 | summary, general characteristics, enzymes, utilisation, quirks | Massilia haematophila, Massilia consociata, Naxibacter varians, Massilia timonae | 2011 |
Kämpfer P, Lodders N, Martin K, Falsen E. |
Revision of the genus Massilia La Scola et al. 2000, with an emended description of the genus and inclusion of all species of the genus Naxibacter as new combinations, and proposal of Massilia consociata sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 7), page(s): 1528-1533 | 10.1099/ijs.0.025585-0 |
| Kampfer2008 | summary, general characteristics, enzymes, antibiotics, utilisation | Naxibacter haematophilus, Naxibacter varians | 2008 |
Kämpfer P, Falsen E, Busse HJ. |
Naxibacter varians sp. nov. and Naxibacter haematophilus sp. nov., and emended description of the genus Naxibacter. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 7), page(s): 1680-1684 | 10.1099/ijs.0.65516-0 |
| Orthova2015 | summary, general characteristics, enzymes, metabolites, utilisation | Massilia norwichensis | 2015 |
Orthová I, Kämpfer P, Glaeser SP, Kaden R, Busse HJ. |
Massilia norwichensis sp. nov., isolated from an air sample. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 1), page(s): 56-64 | 10.1099/ijs.0.068296-0 |
| Chevrot2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Megamonas rupellensis | 2008 |
Chevrot R, Carlotti A, Sopena V, Marchand P, Rosenfeld E. |
Megamonas rupellensis sp. nov., an anaerobe isolated from the caecum of a duck. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 12), page(s): 2921-2924 | 10.1099/ijs.0.2008/001297-0 |
| Balcazar2010 | summary, general characteristics, enzymes, metabolites, utilisation | Bacillus galliciensis | 2010 |
Balcázar JL, Pintado J, Planas M. |
Bacillus galliciensis sp. nov., isolated from faeces of wild seahorses (Hippocampus guttulatus). | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 4), page(s): 892-895 | 10.1099/ijs.0.011817-0 |
| Madhaiyan2007 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, food source | Methylobacterium oryzae | 2007 |
Madhaiyan M, Kim BY, Poonguzhali S, Kwon SW, Song MH, Ryu JH, Go SJ, Koo BS, Sa TM. |
Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 2), page(s): 326-331 | 10.1099/ijs.0.64603-0 |
| Madhaiyan2009 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Methylobacterium phyllosphaerae | 2009 |
Madhaiyan M, Poonguzhali S, Kwon SW, Sa TM. |
Methylobacterium phyllosphaerae sp. nov., a pink-pigmented, facultative methylotroph from the phyllosphere of rice. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 1), page(s): 22-27 | 10.1099/ijs.0.001693-0 |
| Park2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium ginsengisoli | 2008 |
Park MJ, Kim MK, Kim HB, Im WT, Yi TH, Kim SY, Soung NK, Yang DC. |
Microbacterium ginsengisoli sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 2), page(s): 429-433 | 10.1099/ijs.0.65226-0 |
| Kim2011c | summary, general characteristics, enzymes, metabolites, utilisation | Microbacterium mitrae | 2011 |
Kim YJ, Roh SW, Jung MJ, Kim MS, Park EJ, Bae JW. |
Microbacterium mitrae sp. nov., isolated from salted turban shell. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 2), page(s): 399-403 | 10.1099/ijs.0.021519-0 |
| Kageyama2007 | summary, general characteristics, enzymes, metabolites, utilisation | Microbacterium sediminicola, Microbacterium marinilacus | 2007 |
Kageyama A, Takahashi Y, Matsuo Y, Kasai H, Shizuri Y, Ōmura S. |
Microbacterium sediminicola sp. nov. and Microbacterium marinilacus sp. nov., isolated from marine environments. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 10), page(s): 2355-2359 | 10.1099/ijs.0.65038-0 |
| Komagata1964 | food source | Brevibacterium testaceum | 1964 |
Komagata, K., and Iizuka, H. |
New species of Brevibacterium isolated from rice. | Bulletin of the Agricultural Chemical Society of Japan | 38, page(s): 496-502 | 10.1271/NOGEIKAGAKU1924.38.496 |
| Collins1983d | summary, general characteristics, utilisation | Microbacterium testaceum, Microbacterium liquefaciens | 1983 |
Collins MD, Jones D, Keddie RM, Kroppenstedt RM, Schleifer KH. |
Classification of some coryneform bacteria in a new genus Aureobacterium. | Systematic and Applied Microbiology | 4(2), page(s): 236-252 | 10.1016/S0723-2020(83)80053-8 |
| Rieser2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Micrococcus cohnii | 2013 |
Rieser G, Scherer S, Wenning M. |
Micrococcus cohnii sp. nov., isolated from the air in a medical practice. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 1), page(s): 80-85 | 10.1099/ijs.0.036434-0 |
| Chen2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Micrococcus endophyticus, Micrococcus lylae, Micrococcus luteus | 2009 |
Chen HH, Zhao GZ, Park DJ, Zhang YQ, Xu LH, Lee JC, Kim CJ, Li WJ. |
Micrococcus endophyticus sp. nov., isolated from surface-sterilized Aquilaria sinensis roots. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 1), page(s): 1070-1075 | 10.1099/ijs.0.006296-0 |
| Nakamura1995 | summary, general characteristics, enzymes, utilisation | Microlunatus phosphovorus | 1995 |
Nakamura K, Hiraishi A, Yoshimi Y, Kawaharasaki M, Masuda K, Kamagata Y. |
Microlunatus phosphovorus gen. nov., sp. nov., a new gram-positive polyphosphate-accumulating bacterium isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 45(1), page(s): 17-22 | 10.1099/00207713-45-1-17 |
| Weon2010 | summary, general characteristics, enzymes, metabolites | Microvirga aerophila, Microvirga aerilata, Microvirga flocculans | 2010 |
Weon HY, Kwon SW, Son JA, Jo EH, Kim SJ, Kim YS, Kim BY, Ka JO. |
Description of Microvirga aerophila sp. nov. and Microvirga aerilata sp. nov., isolated from air, reclassification of Balneimonas flocculans Takeda et al. 2004 as Microvirga flocculans comb. nov. and emended description of the genus Microvirga. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 11), page(s): 2596-2600 | 10.1099/ijs.0.018770-0 |
| Klaring2015 | summary, general characteristics, enzymes, metabolites, utilisation | Murimonas intestini | 2015 |
Kläring K, Just S, Lagkouvardos I, Hanske L, Haller D, Blaut M, Wenning M, Clavel T. |
Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 3), page(s): 870-878 | 10.1099/ijs.0.000030 |
| Adekambi2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Mycobacterium bolletii, Mycobacterium phocaicum, Mycobacterium aubagnense | 2006 |
Adékambi T, Berger P, Raoult D, Drancourt M. |
rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 1), page(s): 133-143 | 10.1099/ijs.0.63969-0 |
| Berger1971 | summary, general characteristics, metabolites | Neisseria mucosa subsp. heidelbergensis | 1971 |
Berger U. |
Neisseria mucosa var. heidelbergensis [Neisseria mucosa var. heidelbergensis]. | Zeitschrift fur medizinische Mikrobiologie und Immunologie | 156(2), page(s): 154-158 | 10.1007/BF02124646 |
| Wolfgang2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources, oral cavity | Neisseria oralis | 2013 |
Wolfgang WJ, Passaretti TV, Jose R, Cole J, Coorevits A, Carpenter AN, Jose S, Van Landschoot A, Izard J, Kohlerschmidt DJ, Vandamme P, Dewhirst FE, Fisher MA, Musser KA. |
Neisseria oralis sp. nov., isolated from healthy gingival plaque and clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 4), page(s): 1323-1328 | 10.1099/ijs.0.041731-0 |
| Takeuchi2001 | summary, general characteristics | Novosphingobium capsulatum | 2001 |
Takeuchi M, Hamana K, Hiraishi A. |
Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. | International Journal of Systematic Bacteriology | 51(Pt 4), page(s): 1405-1417 | 10.1099/00207713-51-4-1405 |
| Yabuuchi2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Blastomonas ursincola, Novosphingobium capsulatum | 2002 |
Yabuuchi E, Kosako Y, Fujiwara N, Naka T, Matsunaga I, Ogura H, Kobayashi K. |
Emendation of the genus Sphingomonas Yabuuchi et al. 1990 and junior objective synonymy of the species of three genera, Sphingobium, Novosphingobium and Sphingopyxis, in conjunction with Blastomonas ursincola. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 5), page(s): 1485-1496 | 10.1099/00207713-52-5-1485 |
| Shimwell1936 | summary, general characteristics, acid from carbohydrates, metabolites, food source | Flavobacterium proteus | 1936 |
Shimwell J.L., and Grimes, M. |
The distinguishing characters of Flavobacterium proteum (sp. nov.), the common rod bacterium of brewers' yeast. | Journal Institute of Brewing | 42, page(s): 348-350 | 10.1002/j.2050-0416.1936.tb05668.x |
| Lee2004 | summary, general characteristics | Paenibacillus ehimensis, Paenibacillus chitinolyticus | 2004 |
Lee JS, Pyun YR, Bae KS. |
Transfer of Bacillus ehimensis and Bacillus chitinolyticus to the genus Paenibacillus with emended descriptions of Paenibacillus ehimensis comb. nov. and Paenibacillus chitinolyticus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 3), page(s): 929-933 | 10.1099/ijs.0.02765-0 |
| Kuroshima1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus ehimensis, Bacillus chitinolyticus | 1996 |
Kuroshima, Ken-Ichi; Sakane, Takeshi; Takata, Renkichi and Yokota, Akira |
Bacillus ehimensis sp. nov. and Bacillus chitinolyticus sp. nov., New Chitinolytic Members of the Genus Bacillus | International Journal of Systematic and Evolutionary Microbiology | 46(1), page(s): 76-80 | 10.1099/00207713-46-1-76 |
| Iida2005 | summary, general characteristics, enzymes, utilisation | Paenibacillus motobuensis | 2005 |
Iida KI, Ueda Y, Kawamura Y, Ezaki T, Takade A, Yoshida SI, Amako K. |
Paenibacillus motobuensis sp. nov., isolated from a composting machine utilizing soil from Motobu-town, Okinawa, Japan. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1811-1816 | 10.1099/ijs.0.63636-0 |
| Krishnamurthi2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenisporosarcina quisquiliarum, Paenisporosarcina macmurdoensis | 2009 |
Krishnamurthi S, Bhattacharya A, Mayilraj S, Saha P, Schumann P, Chakrabarti T. |
Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 6), page(s): 1364-1370 | 10.1099/ijs.0.65130-0 |
| Truper2005 | genetics, taxonomy | Paenibacillus polymyxa | 2005 |
Judicial Commission |
Judicial Commission Of The International Committee On Systematics Of Prokaryotes. The type species of the genus Paenibacillus Ash et al. 1994 is Paenibacillus polymyxa. Opinion 77. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 513 | 10.1099/ijs.0.63546-0 |
| Ash1993 | taxonomy | Paenibacillus polymyxa, Paenibacillus larvae, Paenibacillus macerans, Paenibacillus pabuli | 1993 |
Ash C, Priest FG, Collins MD. |
Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. | Antonie van Leeuwenhoek | 64(3), page(s): 253-260 | 10.1007/BF00873085 |
| Holmes2006 | blood infection | Pannonibacter phragmitetus | 2006 |
Holmes B, Segers P, Coenye T, Vancanneyt M, Vandamme P. |
Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 12), page(s): 2945-2948 | 10.1099/ijs.0.64563-0 |
| Borsodi2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pannonibacter phragmitetus | 2003 |
Borsodi AK, Micsinai A, Kovács G, Tóth E, Schumann P, Kovács AL, Böddi B, Márialigeti K. |
Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 2), page(s): 555-561 | 10.1099/ijs.0.02356-0 |
| Brady2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pantoea rodasii, Pantoea rwandensis, Pantoea wallisii | 2012 |
Brady CL, Cleenwerck I, van der Westhuizen L, Venter SN, Coutinho TA, De Vos P. |
Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., isolated from Eucalyptus. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 7), page(s): 1457-1464 | 10.1099/ijs.0.032615-0 |
| Funke1994 | summary, general characteristics, enzymes, acid from carbohydrates | Actinomyces neuii | 1994 |
Funke G, Stubbs S, von Graevenitz A, Collins MD. |
Assignment of human-derived CDC group 1 coryneform bacteria and CDC group 1-like coryneform bacteria to the genus Actinomyces as Actinomyces neuii subsp. neuii sp. nov., subsp. nov., and Actinomyces neuii subsp. anitratus subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 44(1), page(s): 167-171 | 10.1099/00207713-44-1-167 |
| DeClerck2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus coagulans | 2004 |
De Clerck E, Rodriguez-Diaz M, Forsyth G, Lebbe L, Logan NA, DeVos P. |
Polyphasic characterization of Bacillus coagulans strains, illustrating heterogeneity within this species, and emended description of the species. | Systematic and Applied Microbiology | 27(1), page(s): 50-60 | 10.1078/0723-2020-00250 |
| Hammer1915 | diary foods | Bacillus coagulans | 1915 |
Hammer, B.W. |
Bacteriological studies on the coagulation of evaporated milk. | Iowa Agricultural Experimental Station Research Bulletin | 19, page(s): 119-131 | |
| Heyrman2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Virgibacillus carmonensis, Virgibacillus necropolis, Virgibacillus picturae, Virgibacillus marismortui, Virgibacillus salexigens | 2003 |
Heyrman J, Logan NA, Busse HJ, Balcaen A, Lebbe L, Rodriguez-Diaz M, Swings J, De Vos P. |
Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 2), page(s): 501-511 | 10.1099/ijs.0.02371-0 |
| Waino1999 | summary, general characteristics, taxonomy | Gracilibacillus halotolerans, Gracilibacillus dipsosauri, Salibacillus salexigens, Virgibacillus pantothenticus | 1999 |
Waino M, Tindall BJ, Schumann P, Ingvorsen K. |
Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 2), page(s): 821-831 | 10.1099/00207713-49-2-821 |
| Garabito1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Salibacillus salexigens | 1997 |
Garabito MJ, Arahal DR, Mellado E, Márquez MC, Ventosa A. |
Bacillus salexigens sp. nov., a new moderately halophilic Bacillus species. | International Journal of Systematic and Evolutionary Microbiology | 47(3), page(s): 735-741 | 10.1099/00207713-47-3-735 |
| Baumann1980 | taxonomy | Vibrio natriegens | 1980 |
Baumann, P., Baumann, L., Bang, S. S., & Woolkalis, M. J. |
Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: Abolition of the genus Beneckea. | Current Microbiology | 4(3), page(s): 127–132 | 10.1007/BF02602814 |
| Webb1971 | Vibrio natriegens | 1971 |
Webb CD, Payne WJ. |
Influence of Na+ on synthesis of macromolecules by a marine bacterium. | Applied Microbiology | 21(6), page(s): 1080-1088 | 10.1128/am.21.6.1080-1088.1971 | |
| Payne1961 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudomonas natriegens | 1961 |
Payne WJ, Eagon RG, Williams AK. |
Some observations on the physiology of Pseudomonas natriegens nov. spec. | Antonie van Leeuwenhoek | 27, page(s): 121-128 | 10.1007/BF02538432 |
| Baumann1971 | taxonomy | Pseudomonas natriegens | 1971 |
Baumann P, Baumann L, Mandel M. |
Taxonomy of marine bacteria: the genus Beneckea. | Journal of Bacteriology | 107(1), page(s): 268-294 | 10.1128/jb.107.1.268-294.1971 |
| Willems1991 | summary, general characteristics, enzymes, metabolites, utilisation | Variovorax paradoxus | 1991 |
A. Willems, J. De Ley, M. Gillis and K. Kersters |
Comamonadaceae, a New Family Encompassing the Acidovorans rRNA Complex, Including Variovorax paradoxus gen. nov., comb. nov., for Alcaligenes paradoxus (Davis 1969) | International Journal of Systematic and Evolutionary Microbiology | 41(3), page(s): 445-450 | 10.1099/00207713-41-3-445 |
| Soo2015 | summary | Vampirovibrio chlorellavorus | 2015 |
Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P. |
Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus. | PeerJ | 3, page(s): e968 | 10.7717/peerj.968 |
| Vela2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Uruburuella suis | 2005 |
Vela AI, Collins MD, Lawson PA, García N, Domínguez L, Fernández-Garayzábal JF. |
Uruburuella suis gen. nov., sp. nov., isolated from clinical specimens of pigs. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 643-647 | 10.1099/ijs.0.63346-0 |
| UlgerToprak2012 | summary, general characteristics, enzymes, metabolites, antibiotics, clinical sources | Peptoniphilus duerdenii, Peptoniphilus koenoeneniae | 2012 |
Ulger-Toprak N, Lawson PA, Summanen P, O'Neal L, Finegold SM. |
Peptoniphilus duerdenii sp. nov. and Peptoniphilus koenoeneniae sp. nov., isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 10), page(s): 2336-2341 | 10.1099/ijs.0.031997-0 |
| Tiago2005 | summary, general characteristics, enzymes, antibiotics, utilisation, water source | Phenylobacterium falsum | 2005 |
Tiago I, Mendes V, Pires C, Morais PV, Verśsimo A. |
Phenylobacterium falsum sp. nov., an Alphaproteobacterium isolated from a nonsaline alkaline groundwater, and emended description of the genus Phenylobacterium. | Systematic and Applied Microbiology | 28(4), page(s): 295-302 | 10.1016/j.syapm.2005.02.005 |
| Kitahara2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides chinchillae, Bacteroides rodentium, Bacteroides sartorii | 2011 |
Kitahara M, Tsuchida S, Kawasumi K, Amao H, Sakamoto M, Benno Y, Ohkuma M. |
Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 4), page(s): 877-881 | 10.1099/ijs.0.024026-0 |
| Sakamoto2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides sartorii | 2012 |
Sakamoto M, Ohkuma M. |
Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 6), page(s): 1241-1244 | 10.1099/ijs.0.035659-0 |
| Clavel2010 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | Bacteroides sartorii | 2010 |
Clavel T, Saalfrank A, Charrier C, Haller D. |
Isolation of bacteria from mouse caecal samples and description of Bacteroides sartorii sp. nov. | Archives of Microbiology | 192(6), page(s): 427-435 | 10.1007/s00203-010-0568-6 |
| Yoon2001 | summary, general characteristics, enzymes, acid from carbohydrates, fermented foods | Planomicrobium koreense, Planomicrobium okeanokoites, Planomicrobium mcmeekinii | 2001 |
Yoon JH, Kang SS, Lee KC, Lee ES, Kho YH, Kang KH, Park YH. |
Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 4), page(s): 1511-1520 | 10.1099/00207713-51-4-1511 |
| Nakagawa1996a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Planococcus okeanokoites | 1996 |
Nakagawa Y, Sakane T, Yokota A. |
Emendation of the genus Planococcus and transfer of Flavobacterium okeanokoites Zobell and Upham 1944 to the genus Planococcus as Planococcus okeanokoites comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(4), page(s): 866-870 | 10.1099/00207713-46-4-866 |
| Gan2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Planococcus halotolerans, Planomicrobium okeanokoites | 2018 |
Gan L, Zhang Y, Zhang L, Li X, Wang Z, He L, Li Z, Tian Y. |
Planococcus halotolerans sp. nov., isolated from a saline soil sample in China. | International Journal of Systematic and Evolutionary Microbiology | 68(11), page(s): 3500-3505 | 10.1099/ijsem.0.003019 |
| Gupta2020b | Family Caryophanaceae | Planomicrobium koreense | 2020 |
Gupta RS, Patel S. |
Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures. | Frontiers in Microbiology | 10, page(s): 2821 | 10.3389/fmicb.2019.02821 |
| Summanen2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Porphyromonas bennonis | 2009 |
Summanen PH, Lawson PA, Finegold SM. |
Porphyromonas bennonis sp. nov., isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 7), page(s): 1727-1732 | 10.1099/ijs.0.001909-0 |
| Downes2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Prevotella marshii, Prevotella baroniae | 2005 |
Downes J, Sutcliffe I, Tanner ACR, Wade WG. |
Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 4), page(s): 1551-1555 | 10.1099/ijs.0.63634-0 |
| Downes2006a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Prevotella bergensis | 2006 |
Downes J, Sutcliffe IC, Hofstad T, Wade WG. |
Prevotella bergensis sp. nov., isolated from human infections. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 3), page(s): 609-612 | 10.1099/ijs.0.63888-0 |
| Chisholm1992 | summary | Prochlorococcus marinus | 1992 |
Sallie W. Chisholm, Sheila L. Frankel, Ralf Goericke, Robert J. Olson, Brian Palenik, John B. Waterbury, Lisa West-Johnsrud & Erik R. Zettler |
Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b | Archives of Microbiology | 157, page(s): 297-300 | 10.1007/BF00245165 |
| Anzai1997 | taxonomy | Pseudomonas luteola | 1997 |
Anzai Y, Kudo Y, Oyaizu H. |
The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera. | International Journal of Systematic Bacteriology | 47(2), page(s): 249-251 | 10.1099/00207713-47-2-249 |
| Holmes1987 | clinical sources | Chryseomonas luteola | 1987 |
Holmes, B., Steigerwalt, A. G., Weaver, R. E. and Brenner, Don J. |
Chryseomonas luteola comb. nov. and Flavimonas oryzihabitans gen. nov., comb. nov., Pseudomonas-Like Species from Human Clinical Specimens and Formerly Known, Respectively, as Groups Ve-1 and Ve-2 | International Journal of Systematic and Evolutionary Microbiology | 37(3), page(s): 245-250 | 10.1099/00207713-37-3-245 |
| Holmes1986 | clinical sources | Chryseomonas luteola | 1986 |
Holmes, B., Steigerwalt, A. G., Weaver, R. E. and Brenner, Don J. |
Chryseomonas polytricha gen. nov., sp. nov., a Pseudomonas-Like Organism from Human Clinical Specimens and Formerly Known as Group Ve-1 | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 161-165 | 10.1099/00207713-36-2-161 |
| Uchino2001 | summary, general characteristics, enzymes, metabolites, utilisation | Pseudomonas fulva, Pseudomonas parafulva, Pseudomonas cremoricolorata | 2001 |
Uchino M, Shida O, Uchimura T, Komagata K. |
Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov. | Journal of General and Applied Microbiology | 47(5), page(s): 247-261 | 10.2323/jgam.47.247 |
| Finkmann2000 | summary, general characteristics, metabolites, antibiotics | Stenotrophomonas nitritireducens, Luteimonas mephitis, Pseudoxanthomonas broegbernensis | 2000 |
Finkmann W, Altendorf K, Stackebrandt E, Lipski A. |
Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 1), page(s): 273-282 | 10.1099/00207713-50-1-273 |
| Yoon2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Psychrobacter aquimaris, Psychrobacter namhaensis | 2005 |
Yoon JH, Lee CH, Yeo SH, Oh TK. |
Psychrobacter aquimaris sp. nov. and Psychrobacter namhaensis sp. nov., isolated from sea water of the South Sea in Korea. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 3), page(s): 1007-1013 | 10.1099/ijs.0.63464-0 |
| Yoon2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, fermented foods | Psychrobacter alimentarius | 2005 |
Yoon JH, Yeo SH, Oh TK, Park YH. |
Psychrobacter alimentarius sp. nov., isolated from squid jeotgal, a traditional Korean fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 171-176 | 10.1099/ijs.0.63140-0 |
| Jung2005 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation, fermented foods | Psychrobacter cibarius | 2005 |
Jung SY, Lee MH, Oh TK, Park YH, Yoon JH. |
Psychrobacter cibarius sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 577-582 | 10.1099/ijs.0.63398-0 |
| Grison2015 | summary, general characteristics, antibiotics, utilisation | Rhizobium metallidurans | 2015 |
Grison CM, Jackson S, Merlot S, Dobson A, Grison C. |
Rhizobium metallidurans sp. nov., a symbiotic heavy metal resistant bacterium isolated from the Anthyllis vulneraria Zn-hyperaccumulator. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 5), page(s): 1525-1530 | 10.1099/ijs.0.000130 |
| Sawana2014 | summary | Paraburkholderia fungorum | 2014 |
Sawana A, Adeolu M, Gupta RS. |
Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. | Frontiers in Genetics | 5, page(s): 429 | 10.3389/fgene.2014.00429 |
| Coenye2001 | summary, general characteristics, enzymes, metabolites, utilisation, clinical sources | Burkholderia fungorum, Burkholderia caledonica | 2001 |
Coenye T, Laevens S, Willems A, Ohlén M, Hannant W, Govan JR, Gillis M, Falsen E, Vandamme P. |
Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 1099-1107 | 10.1099/00207713-51-3-1099 |
| Lee2004a | summary, general characteristics, enzymes, metabolites, utilisation | Paracoccus haeundaensis | 2004 |
Lee JH, Kim YS, Choi TJ, Lee WJ, Kim YT. |
Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 5), page(s): 1699-1702 | 10.1099/ijs.0.63146-0 |
| Deng2011 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Paracoccus sphaerophysae | 2011 |
Deng ZS, Zhao LF, Xu L, Kong ZY, Zhao P, Qin W, Chang JL, Wei GH. |
Paracoccus sphaerophysae sp. nov., a siderophore-producing, endophytic bacterium isolated from root nodules of Sphaerophysa salsula. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 3), page(s): 665-669 | 10.1099/ijs.0.021071-0 |
| moore1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Selenomonas noxia, Selenomonas flueggei, Selenomonas infelix, Selenomonas dianae, Selenomonas artemidis | 1987 |
Moore, Lillian V. H. and Johnson, John L. and Moore, W. E. C. |
Selenomonas noxia sp. nov., Selenomonas flueggei sp. nov., Selenomonas infelix sp. nov., Selenomonas dianae sp. nov., and Selenomonas artemidis sp. nov., from the Human Gingival Crevice | International Journal of Systematic and Evolutionary Microbiology | 37(3), page(s): 271-280 | 10.1099/00207713-37-3-271 |
| Collins2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Sneathia sanguinegens | 2001 |
Collins MD, Hoyles L, Tornqvist E, von Essen R, Falsen E. |
Characterization of some strains from human clinical sources which resemble "Leptotrichia sanguinegens": description of Sneathia sanguinegens sp. nov., gen. nov. | Systematic and Applied Microbiology | 24(3), page(s): 358-361 | 10.1078/0723-2020-00047. |
| Hanff1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, blood infection | Leptotrichia sanguinegens | 1995 |
Hanff PA, Rosol-Donoghue JA, Spiegel CA, Wilson KH, Moore LH. |
Leptotrichia sanguinegens sp. nov., a new agent of postpartum and neonatal bacteremia. | Clinical Infectious Diseases | 20(Suppl 2), page(s): S237-239 | 10.1093/clinids/20.supplement_2.s237 |
| Schmidt2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, diary foods | Sphingobacterium lactis, Sphingobacterium alimentarium | 2012 |
Schmidt VSJ, Wenning M, Scherer S. |
Sphingobacterium lactis sp. nov. and Sphingobacterium alimentarium sp. nov., isolated from raw milk and a dairy environment. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 7), page(s): 1506-1511 | 10.1099/ijs.0.036327-0 |
| Liu2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sphingobacterium nematocida | 2012 |
Liu J, Yang LL, Xu CK, Xi JQ, Yang FX, Zhou F, Zhou Y, Mo MH, Li WJ. |
Sphingobacterium nematocida sp. nov., a nematicidal endophytic bacterium isolated from tobacco. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 8), page(s): 1809-1813 | 10.1099/ijs.0.033670-0 |
| Choi2012 | summary, general characteristics, metabolites, utilisation | Sphingobacterium kyonggiense, Sphingobacterium daejeonense, Sphingobacterium mizutaii | 2012 |
Choi HA, Lee SS. |
Sphingobacterium kyonggiense sp. nov., isolated from chloroethene-contaminated soil, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 11), page(s): 2559-2564 | 10.1099/ijs.0.024737-0 |
| Holmes1988a | summary, general characteristics, enzymes, acid from carbohydrates, taxonomy | Flavobacterium yabuuchiae, Flavobacterium mizutaii, Sphingobacterium mizutae, Flavobacterium spiritivorum | 1988 |
Holmes, B., Weaver, R. E., Steigerwalt, A. G. and Brenner, Don J. |
A Taxonomic Study of Flavobacterium spiritivorum and Sphingobacterium mizutae: Proposal of Flavobacterium yabuuchiae sp. nov. and Flavobacterium mizutaii comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 38(4), page(s): 348-353 | 10.1099/00207713-38-4-348 |
| Wauters2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sphingobacterium mizutaii | 2012 |
Wauters G, Janssens M, De Baere T, Vaneechoutte M, Deschaght P. |
Isolates belonging to CDC group II-i belong predominantly to Sphingobacterium mizutaii Yabuuchi et al. 1983: emended descriptions of S. mizutaii and of the genus Sphingobacterium. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 11), page(s): 2598-2601 | 10.1099/ijs.0.037325-0 |
| Feng2019 | genetics, taxonomy, summary, utilisation | Sphingobium indicum, Sphingobium fuliginis, Sphingobium xenophagum, Sphingobium cupriresistens | 2019 |
Feng, Guang-Da and Chen, Mei-Biao and Zhang, Xian-Jiao and Wang, Dong-Dong and Zhu, Hong-Hui |
Whole genome sequences reveal the presence of 11 heterotypic synonyms in the genus Sphingobium and emended descriptions of Sphingobium indicum, Sphingobium fuliginis, Sphingobium xenophagum and Sphingobium cupriresistens. | International Journal of Systematic and Evolutionary Microbiology | 69(7), page(s): 2161-2165 | 10.1099/ijsem.0.003432 |
| Chen2016 | summary, general characteristics, enzymes, utilisation | Sphingobium hydrophobicum, Sphingobium xenophagum | 2016 |
Chen X, Wang H, Xu J, Song D, Sun G, Xu M. |
Sphingobium hydrophobicum sp. nov., a hydrophobic bacterium isolated from electronic-waste-contaminated sediment. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 3912-3916 | 10.1099/ijsem.0.001287 |
| Pal2006 | summary, general characteristics, genetics, taxonomy | Sphingobium xenophagum | 2006 |
Pal R, Bhasin VK, Lal R. |
Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001 as Sphingobium xenophagum comb. nov. and Sphingopyxis taejonensis comb. nov., respectively. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 3), page(s): 667-670 | 10.1099/ijs.0.64161-0 |
| Stolz2000 | summary, general characteristics, enzymes, metabolites, utilisation | Sphingomonas xenophagum | 2000 |
Stolz A, Schmidt-Maag C, Denner EB, Busse HJ, Egli T, Kämpfer P. |
Description of Sphingomonas xenophaga sp. nov. for strains BN6T and N,N which degrade xenobiotic aromatic compounds. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 1), page(s): 35-41 | 10.1099/00207713-50-1-35 |
| Lee2001a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Sphingomonas aquatilis, Sphingomonas koreensis, Sphingomonas taejonensis | 2001 |
Lee JS, Shin YK, Yoon JH, Takeuchi M, Pyun YR, Park YH. |
Sphingomonas aquatilis sp. nov., Sphingomonas koreensis sp. nov., and Sphingomonas taejonensis sp. nov., yellow-pigmented bacteria isolated from natural mineral water. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 4), page(s): 1491-1498 | 10.1099/00207713-51-4-1491 |
| Zhang2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Sphingomonas glacialis | 2011 |
Zhang DC, Busse HJ, Liu HC, Zhou YG, Schinner F, Margesin R. |
Sphingomonas glacialis sp. nov., a psychrophilic bacterium isolated from alpine glacier cryoconite. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 3), page(s): 587-591 | 10.1099/ijs.0.023135-0 |
| Roh2009 | summary, general characteristics, enzymes, metabolites, utilisation | Sphingomonas aestuarii | 2009 |
Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Oh HM, Bae JW. |
Sphingomonas aestuarii sp. nov., isolated from tidal flat sediment. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 6), page(s): 1359-1363 | 10.1099/ijs.0.65528-0 |
| Denner1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sphingomonas echinoides | 1999 |
Denner EB, Kämpfer P, Busse HJ, Moore ER. |
Reclassification of Pseudomonas echinoides Heumann 1962, 343AL, in the genus Sphingomonas as Sphingomonas echinoides comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 3), page(s): 1103-1109 | 10.1099/00207713-49-3-1103 |
| Zhang2014b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sporosarcina siberiensis | 2014 |
Zhang G, Ren H, Chen X, Zhang Y, Yang Y, Wang S, Jiang Y. |
Sporosarcina siberiensis sp. nov., isolated from the East Siberian Sea. | Antonie van Leeuwenhoek | 106(3), page(s): 489-495 | 10.1007/s10482-014-0217-1 |
| Devriese2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus pseudintermedius | 2005 |
Devriese LA, Vancanneyt M, Baele M, Vaneechoutte M, De Graef E, Snauwaert C, Cleenwerck I, Dawyndt P, Swings J, Decostere A, Haesebrouck F. |
Staphylococcus pseudintermedius sp. nov., a coagulase-positive species from animals. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 4), page(s): 1569-1573 | 10.1099/ijs.0.63413-0 |
| Cole2019 | taxonomy, genetics | Staphylococcus pseudintermedius, Staphylococcus nepalensis, Staphylococcus carnosus, Staphylococcus devriesei, Staphylococcus hyicus, Staphylococcus petrasii | 2019 |
Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J; |
Modernising Medical Microbiology Consortium. Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884. | Microbiology Resource Announcements | 8(17), page(s): e00062-19 | 10.1128/MRA.00062-19 |
| Spergser2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, food source | Staphylococcus nepalensis | 2003 |
Spergser J, Wieser M, Täubel M, Rosselló-Mora RA, Rosengarten R, Busse HJ. |
Staphylococcus nepalensis sp. nov., isolated from goats of the Himalayan region. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 6), page(s): 2007-2011 | 10.1099/ijs.0.02646-0 |
| Sizova2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Stomatobaculum longum | 2013 |
Sizova MV, Muller P, Panikov N, Mandalakis M, Hohmann T, Hazen A, Fowle W, Prozorov T, Bazylinski DA, Epstein SS. |
Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 4), page(s): 1450-1456 | 10.1099/ijs.0.042812-0 |
| Labeda2014 | summary, general characteristics, enzymes, utilisation | Streptomyces albus, Streptomyces pathocidini | 2014 |
Labeda DP, Doroghazi JR, Ju KS, Metcalf WW. |
Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 3), page(s): 894-900 | 10.1099/ijs.0.058107-0 |
| Zhang2010a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Sphingopyxis bauzanensis | 2010 |
Zhang DC, Liu HC, Xin YH, Zhou YG, Schinner F, Margesin R. |
Sphingopyxis bauzanensis sp. nov., a psychrophilic bacterium isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 11), page(s): 2618-2622 | 10.1099/ijs.0.018218-0 |
| Kaminski2017 | genetics, taxonomy | Sphingopyxis bauzanensis | 2017 |
Michal A. Kaminski, Ewa M. Furmanczyk, Andrzej Dziembowski, Adam Sobczak, and Leszek Lipinski |
Draft Genome Sequence of the Type Strain Sphingopyxis bauzanensis DSM 22271 | Genome Announcements | 5(37), page(s): e01014-17 | 10.1128/genomeA.01014-17 |
| Dong2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Taonella mepensis | 2013 |
Xi XD, Dong WL, Zhang J, Huang Y, Cui ZL. |
Taonella mepensis gen. nov., sp. nov., a member of the family Rhodospirillaceae isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 7), page(s): 2472-2476 | 10.1099/ijs.0.047803-0 |
| Kane1991 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Clostridium mayombei | 1991 |
Matthew D. Kane, Alain Brauman and John A. Breznak |
Clostridium mayombei sp. nov., an H2/C02 acetogenic bacterium from the gut of the African soil-feeding termite, Cubitermes speciosus | Archives of Microbiology | 156, page(s): 99-104 | 10.1007/BF00290980 |
| Cheng2016 | antibiotics, clinical | Terrisporobacter Mayombei, Terrisporobacter glycolicus | 2016 |
Cheng MP, Domingo MC, Lévesque S, Yansouni CP. |
A case report of a deep surgical site infection with Terrisporobacter glycolicus/T. Mayombei and review of the literature. | BMC Infectious Diseases | 16(1), page(s): 529 | 10.1186/s12879-016-1865-8 |
| Collins1990 | summary, general characteristics, acid from carbohydrates, metabolites | Tetragenococcus halophilus | 1990 |
Collins MD, Williams AM, Wallbanks S. |
The phylogeny of Aerococcus and Pediococcus as determined by 16S rRNA sequence analysis: description of Tetragenococcus gen. nov. | FEMS Microbiology Letters | 58(3), page(s): 255-262 | 10.1016/s0378-1097(05)80004-7 |
| Garcia2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Thalassobacillus devorans | 2005 |
Garcia MT, Gallego V, Ventosa A, Mellado E. |
Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1789-1795 | 10.1099/ijs.0.63560-0 |
| Foss1998 | summary, general characteristics, utilisation | Thauera linaloolentis, Thauera terpenica | 1998 |
Foss S, Harder J. |
Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen-containing monoterpenes (linalool, menthol, and eucalyptol) nitrate. | Systematic and Applied Microbiology | 21(3), page(s): 365-373 | 10.1016/s0723-2020(98)80046-5 |
| Wang2014 | summary, general characteristics, enzymes, metabolites, utilisation | Thermomonas carbonis | 2014 |
Wang L, Zheng S, Wang D, Wang L, Wang G. |
Thermomonas carbonis sp. nov., isolated from the soil of a coal mine. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 11), page(s): 3631-3635 | 10.1099/ijs.0.063800-0 |
| Kristjansson1994 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, water source | Thermus scotoductus | 1994 |
Jakob K. Kristjansson, Sigridur Hjorleifsdottir, Viggo Th. Marteinsson, Gudni A. Alfredsson |
Thermus scotoductus, sp. nov., a Pigment-Producing Thermophilic Bacterium from Hot Tap Water in Iceland and Including Thermus sp. X-1 | Systematic and Applied Microbiology | 17(1), page(s): 44-50 | 10.1016/S0723-2020(11)80030-5 |
| Balkwill2004 | summary, general characteristics, enzymes, utilisation | Thermus scotoductus | 2004 |
Balkwill DL, Kieft TL, Tsukuda T, Kostandarithes HM, Onstott TC, Macnaughton S, Bownas J, Fredrickson JK. |
Identification of iron-reducing Thermus strains as Thermus scotoductus. | Extremophiles | 8(1), page(s): 37-44 | 10.1007/s00792-003-0357-0 |
| Zgheib2021 | summary | Tractidigestivibacter scatoligenes, Olsenella massiliensis, Olsenella phocaeensis, Thermophilibacter provencensis, Parafannyhessea umbonata | 2021 |
Zgheib, Rita and Anani, Hussein and Meng, Marine Makoa and Mailhe, Morgane and Ricaboni, Davide and Morand, Aurélie and Caputo, Aurelia and Traore, Sory Ibrahima and Fontanini, Anthony and Armstrong, Nicholas and Raoult, Didier and Fournier, Pierre Edouard |
New human-associated species of the family Atopobiaceae and proposal to reclassify members of the genus Olsenella. | International Journal of Systematic and Evolutionary Microbiology | 71(5), | 10.1099/ijsem.0.004819 |
| Olson2007 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Tsukamurella spongiae | 2007 |
Olson JB, Harmody DK, Bej AK, McCarthy PJ. |
Tsukamurella spongiae sp. nov., a novel actinomycete isolated from a deep-water marine sponge. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 7), page(s): 1478-1481 | 10.1099/ijs.0.64837-0 |
| Teng2016 | summary, general characteristics, utilisation | Tsukamurella pulmonis | 2016 |
Teng JL, Tang Y, Huang Y, Guo FB, Wei W, Chen JH, Wong SS, Lau SK, Woo PC. |
Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era. | Frontiers in Microbiology | 7, page(s): 1137 | 10.3389/fmicb.2016.01137 |
| Yassin1996 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | Tsukamurella pulmonis | 1996 |
Yassin AF, Rainey FA, Brzezinka H, Burghardt J, Rifai M, Seifert P, Feldmann K, Schaal KP. |
Tsukamurella pulmonis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(2), page(s): 429-436 | 10.1099/00207713-46-2-429 |
| Scardovi1969 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bifidobacterium globosum, Bifidobacterium ruminale | 1969 |
Scardovi V, Trovatelli LD, Crociani F, Sgorbati B. |
Bifid bacteria in bovine rumen. New species of the genus Bifidobacterium: B. globosum n.sp. and B. ruminale n.sp. | Archives of Microbiology | 68, page(s): 278–294 | 10.1007/BF00409919 |
| Dewhirst2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Cardiobacterium hominis | 2005 |
Floyd E. Dewhirst and Bruce J. Paster |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Cardiobacterales, Genus I. Cardiobacterium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 123-126 | ISBN 13: 9780387241449 |
| vanGylswyk1980 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, butyrate | Fusobacterium polysaccharolyticum | 1980 |
van Gylswyk NO. |
Fusobacterium polysaccharolyticum sp.nov., a gram-negative rod from the rumen that produces butyrate and ferments cellulose and starch. | Journal of General Microbiology | 116(1), page(s): 157-163 | 10.1099/00221287-116-1-157 |
| vanGylswyk1980a | summary, general characteristics | Clostridium polysaccharolyticum | 1980 |
Van Gylswyk, N.O., Morris, E. Jane and Els, H.J. |
Sporulation and Cell Wall Structure of Clostridium polysaccharolyticum comb. nov. (Formerly Fusobacterium polysaccharolyticum) | Microbiology | 121(2), page(s): 491-493 | 10.1099/00221287-121-2-491 |
| NakagawaBergey2010 | summary, general characteristics, enzymes, metabolites, utilisation | Cytophaga hutchinsonii | 2010 |
Yasuyoshi Nakagawa |
Bergey's manual of systematic bacteriology. Vol. 4, The Bacteroides. Family Cytophagaceae, Genus I. Cytophaga | Bacteroides. In Bergey's manual of systematic bacteriology: Vol. 4. | 4, page(s): 371 | 10.1007/978-0-387-68572-4 |
| Gill1991 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | CDC Group DF-3 | 1991 |
Gill VJ, Travis LB, Williams DY. |
Clinical and microbiological observations on CDC group DF-3, a gram-negative coccobacillus. | Journal of Clinical Microbiology | 29(8), page(s): 1589-1592 | 10.1128/jcm.29.8.1589-1592.1991 |
| Senn2006 | antibiotics, blood infection | Granulicatella para-adiacens | 2006 |
Senn L, Entenza JM, Greub G, Jaton K, Wenger A, Bille J, Calandra T, Prod'hom G. |
Bloodstream and endovascular infections due to Abiotrophia defectiva and Granulicatella species. | BMC Infectious Diseases | 6, page(s): 9 | 10.1186/1471-2334-6-9 |
| Gliesche2005 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Hyphomicrobium facile | 2005 |
Christian Gliesche, Andreas Fesefeldt and Peterh Hirsch |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Hyphomicrobiaceae, Genus I. Hyphomicrobium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 476-494 | ISBN-13: 978-0387-24145-6 |
| Blekher2000 | antibiotics | Leminorella richardii | 2000 |
Blekher L, Siegman-Igra Y, Schwartz D, Berger SA, Carmeli Y. |
Clinical significance and antibiotic resistance patterns of Leminorella spp., an emerging nosocomial pathogen. | Journal of Clinical Microbiology | 38(8), page(s): 3036-3038 | 10.1128/JCM.38.8.3036-3038.2000 |
| Collins1980a | taxonomy | Microbacterium testaceum | 1980 |
Collins MD, Goodfellow M, Minnikin DE. |
Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa. | Journal of General Microbiology | 118(1), page(s): 29-37 | 10.1099/00221287-118-1-29. |
| Ferrand2013 | clinical, summary, antibiotics | Paenibacillus glucanolyticus | 2013 |
Ferrand J, Hadou T, Selton-Suty C, Goehringer F, Sadoul N, Alauzet C, Lozniewski A. |
Cardiac device-related endocarditis caused by Paenibacillus glucanolyticus. | Journal of Clinical Microbiology | 51(10), page(s): 3439-3442 | 10.1128/JCM.00864-13 |
| Pellegrin1999 | summary, general characteristics, enzymes, utilisation | Sphaerotilus natans | 1999 |
Pellegrin V, Juretschko S, Wagner M, Cottenceau G. |
Morphological and biochemical properties of a Sphaerotilus sp. Isolated from paper mill slimes. | Applied and Environmental Microbiology | 65(1), page(s): 156-162 | 10.1128/AEM.65.1.156-162.1999 |
| vanVeen1978 | summary, general characteristics, enzymes, utilisation | Sphaerotilus natans | 1978 |
van Veen WL, Mulder EG, Deinema MH. |
The Sphaerotilus-Leptothrix group of bacteria. | Microbiology Reviews | 52(2), page(s): 329-356 | 10.1128/mr.42.2.329-356.1978 |
| Martin2004 | summary, antibiotics | Streptomyces albus | 2004 |
Martín MC, Manteca A, Castillo ML, Vázquez F, Méndez FJ. |
Streptomyces albus isolated from a human actinomycetoma and characterized by molecular techniques. | Journal of Clinical Microbiology | 42(12), page(s): 5957-5960 | 10.1128/JCM.42.12.5957-5960.2004 |
| Balan2018 | summary, oral cavity | Terrahaemophilus aromaticivorans | 2018 |
Balan P, Chong YS, Umashankar S, Swarup S, Loke WM, Lopez V, He HG, Seneviratne CJ. |
Keystone Species in Pregnancy Gingivitis: A Snapshot of Oral Microbiome During Pregnancy and Postpartum Period. | Frontiers in Microbiology | 9(2360), page(s): 1-11 | 10.3389/fmicb.2018.02360 |
| Chung2019 | summary, general characteristics, utilisation, gut microbiome, compilation | Terrahaemophilus aromaticivorans, compilation | 2019 |
Wing Sun Faith Chung, Alan W Walker, Joan Vermeiren, Paul O Sheridan, Douwina Bosscher, Vicenta Garcia-Campayo, Julian Parkhill, Harry J Flint, Sylvia H Duncan |
Impact of carbohydrate substrate complexity on the diversity of the human colonic microbiota. | FEMS Microbiology Ecology | 95(1), page(s): fiy201 | 10.1093/femsec/fiy201 |
| Baer2005Bergey | summary | Vampirovibrio chlorellavorus | 2005 |
Marcie L Baer and Henry N Williams |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Bdellovibrionaceae, Genus IV. Vampirovibrio | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 1058 | ISBN-10: 0-387-24145-0 |
| Willems2005bBergey | summary, general characteristics, antibiotics, utilisation | Variovorax paradoxus | 2005 |
Anne Willems, Joris Mergaert and Jean Swings |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Comamonadeae, Genus X. Variovorax | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2, page(s): 732-735 | ISBN-13: 978-0387-24145-6 |
| Petrov2017 | clinical specimens, microbiota, health, Parkinson's disease | Christensenella minuta, Catabacter hongkongensis, Lactobacillus mucosae, Ruminococcus bromii, and Papillibacter cinnamivorans, Bacteroides massiliensis, Stoquefichus massiliensis, Bacteroides coprocola, Blautia glucerasea, Dorea longicatena, Bacteroides dorei, Bacteroides plebeus, Prevotella copri, Coprococcus eutactus, and Ruminococcus callidus | 2017 |
Petrov VA, Saltykova IV, Zhukova IA, Alifirova VM, Zhukova NG, Dorofeeva YB, Tyakht AV, Kovarsky BA, Alekseev DG, Kostryukova ES, Mironova YS, Izhboldina OP, Nikitina MA, Perevozchikova TV, Fait EA, Babenko VV, Vakhitova MT, Govorun VM, Sazonov AE. |
Analysis of Gut Microbiota in Patients with Parkinson's Disease. | Bulletin of Experimental and Biological Medicine | 162(6), page(s): 734-737 | 10.1007/s10517-017-3700-7 |
| Ricaboni2016a | summary, general characteristics | Merdibacter massiliensis | 2016 |
Ricaboni D, Mailhe M, Cadoret F, Vitton V, Fournier PE, Raoult D, Lagier JC. |
'Merdibacter massiliensis' gen. nov., sp. nov., isolated from human ileum. | New Microbes New Infections | 15, page(s): 89-91 | 10.1016/j.nmni.2016.11.017 |
| Takakura2019a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Anaerosphaera massiliensis | 2019 |
Takakura T, Francis R, Anani H, Bilen M, Raoult D, Bou Khalil JY. |
Anaerosphaera massiliensis sp. nov., a new bacterium isolated from the stool of a 39-year-old Pygmy. | New Microbes New Infections | 33(100633), | 10.1016/j.nmni.2019.100633 |
| Attie2014 | summary, general characteristics, genetics | Bacillus alcalophilus | 2014 |
Attie O, Jayaprakash A, Shah H, Paulsen IT, Morino M, Takahashi Y, Narumi I, Sachidanandam R, Satoh K, Ito M, Krulwich TA. |
Draft Genome Sequence of Bacillus alcalophilus AV1934, a Classic Alkaliphile Isolated from Human Feces in 1934. | Genome Announcements | 2(6), page(s): e01175-14 | 10.1128/genomeA.01175-14 |
| Aoyama1952 | summary | Bacillus aneurinolyticus | 1952 |
Aoyama, S. |
Studies on the thiamin-decomposing bacterium. I. Bacteriological researches of a new thiamin decomposing bacillus Bacillus aneurinolyticus Kimura et Aoyama. | Acta Scholae Medicinalis Universitatis in Kioto | 30(2), page(s): 127-132 | 13040074 PMID |
| Terekhov2018 | summary, faeces | Acinetobacter baumannii, Aerococcus viridans, Akkermansia muciniphila, Alistipes putredinis, Bacillus licheniformis, Bacillus pumilus, Bacillus subtilis, Bacteroides caccae, Bacteroides dorei, Bacteroides massiliensis, Bacteroides nordii, Bacteroides ovatus, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides vulgatus, Bacteroides xylanisolvens, Dialister succinatiphilus, Enterobacter cloacae, Enterococcus casseliflavus, Enterococcus faecalis, Enterococcus faecium, Enterococcus saccharolyticus, Escherichia coli, Gemella morbillorum, Lactococcus garvieae, Lactococcus lactis, Macrococcus caseolyticus, Morganella morganii, Parabacteroides distasonis, Parabacteroides merdae, Proteus mirabilis, Staphylococcus equorum, Staphylococcus vitulinus, Staphylococcus warneri, Staphylococcus xylosus, Weissella confusa, Yersinia enterocolitica | 2018 |
Terekhov SS, Smirnov IV, Malakhova MV, Samoilov AE, Manolov AI, Nazarov AS, Danilov DV, Dubiley SA, Osterman IA, Rubtsova MP, Kostryukova ES, Ziganshin RH, Kornienko MA, Vanyushkina AA, Bukato ON, Ilina EN, Vlasov VV, Severinov KV, Gabibov AG, Altman S. |
Ultrahigh-throughput functional profiling of microbiota communities. | Proceeding of the National Academy of Sciences | 115(38), page(s): 9551-9556 | 10.1073/pnas.1811250115 |
| King2019 | gut microbiome, compilation | compilation | 2019 |
King CH, Desai H, Sylvetsky AC, LoTempio J, Ayanyan S, Carrie J, Crandall KA, Fochtman BC, Gasparyan L, Gulzar N, Howell P, Issa N, Krampis K, Mishra L, Morizono H, Pisegna JR, Rao S, Ren Y, Simonyan V, Smith K, VedBrat S, Yao MD, Mazumder R. |
Baseline human gut microbiota profile in healthy people and standard reporting template. | PLoS One | 14(9), page(s): e0206484 | 10.1371/journal.pone.0206484 |
| Moore1974 | gut microbiome, compilation | compilation | 1974 |
Moore WE, Holdeman LV. |
Human fecal flora: the normal flora of 20 Japanese-Hawaiians. | Applied Microbiology | 27(5), page(s): 691-679 | 10.1128/am.27.5.961-979.1974 |
| Chung2016 | gut microbiome, compilation | compilation | 2016 |
Chung WS, Walker AW, Louis P, Parkhill J, Vermeiren J, Bosscher D, Duncan SH, Flint HJ. |
Modulation of the human gut microbiota by dietary fibres occurs at the species level. | BMC Biology | 14, page(s): 3 | 10.1186/s12915-015-0224-3 |
| Salonen2014 | gut microbiome, health, obesity, compilation | compilation | 2014 |
Salonen A, Lahti L, Salojärvi J, Holtrop G, Korpela K, Duncan SH, Date P, Farquharson F, Johnstone AM, Lobley GE, Louis P, Flint HJ, de Vos WM. |
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men. | The ISME Journal | 8(11), page(s): 2218-2230 | 10.1038/ismej.2014.63 |
| Yanagita2003 | summary | Oscillospira guillermondii | 2003 |
Yanagita K, Manome A, Meng XY, Hanada S, Kanagawa T, Tsuchida T, Mackie RI, Kamagata Y. |
Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guillermondii, a large, morphologically conspicuous but uncultured ruminal bacterium. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1609-1614 | 10.1099/ijs.0.02541-0 |
| He1991 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium cellulosi, Clostridium cellulofermentans | 1991 |
He YL, Ding YF, Long YQ. |
Two cellulolytic Clostridium species: Clostridium cellulosi sp. nov. and Clostridium cellulofermentans sp. nov. | International Journal of Systematic Bacteriology | 41(2), page(s): 306-309 | 10.1099/00207713-41-2-306 |
| GrechMora1996 | summary, general characteristics, metabolites, utilisation | Sporobacter termitidis | 1996 |
Grech-Mora, I.; Fardeau, M.-L.; Patel, B. K. C.; Ollivier, B.; Rimbault, A.;Prensier, G.; Garcia, J.-L. and Garnier-Sillam, E. |
Isolation and Characterization of Sporobacter termitidis gen. nov., sp. nov., from the Digestive Tract of the Wood-Feeding Termite Nasutitermes lujae | International Journal of Systematic and Evolutionary Microbiology | 46(2), page(s): 512-518 | 10.1099/00207713-46-2-512 |
| Fardeau2001 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium stercorarium | 2001 |
Fardeau ML, Ollivier B, Garcia JL, Patel BK. |
Transfer of thermobacteroides leptospartum and Clostridium thermolacticum as Clostridium stercorarium subsp. leptospartum subsp. thermolacticum subsp. nov., comb. nov. and C. stercorarium subsp. thermolacticum subsp. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 1127-1131 | 10.1099/00207713-51-3-1127 |
| Ndongo2016b | summary, general characteristics | Marseillibacter massiliensis | 2016 |
Ndongo S, Dubourg G, Bittar F, Sokhna C, Fournier PE, Raoult D. |
Marseillibacter massiliensis gen. nov., sp. nov., a new bacterial genus isolated from the human gut. | New Microbes New Infections | 16, page(s): 30-31 | 10.1016/j.nmni.2016.12.006 |
| Alkhalil2017 | health, ulcerative colitis, gut microbiome | compilation | 2017 |
Samia Alkhalil |
Bacterial involvements in ulcerative colitis: molecular and microbiological studies | Student thesis: Doctoral Thesis | page(s): 1-303 | |
| Clavel2009 | summary, general characteristics, enzymes, metabolites, antibiotics | Enterorhabdus mucosicola | 2009 |
Clavel T, Charrier C, Braune A, Wenning M, Blaut M, Haller D. |
Isolation of bacteria from the ileal mucosa of TNFdeltaARE mice and description of Enterorhabdus mucosicola gen. nov., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 7), page(s): 1805-1812 | 10.1099/ijs.0.003087-0 |
| Stoll2021 | summary, general characteristics, genetics, taxonomy | Parvibacter caecicola | 2021 |
Stoll DA, Danylec N, Grimmler C, Kulling SE, Huch M. |
Genome analysis reveals that the correct name of type strain Adlercreutzia caecicola DSM 22242T is Parvibacter caecicola Clavel et al. 2013. | International Journal of Systematic and Evolutionary Microbiology | 71(5), | 10.1099/ijsem.0.004814 |
| Clavel2013 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Parvibacter caecicola | 2013 |
Clavel T, Charrier C, Wenning M, Haller D. |
Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family Coriobacteriaceae isolated from the caecum of a mouse. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 7), page(s): 2642-2648 | 10.1099/ijs.0.045344-0 |
| Anderson2000 | summary, general characteristics, metabolites, utilisation | Denitrobacterium detoxificans | 2000 |
Anderson RC, Rasmussen MA, Jensen NS, Allison MJ. |
Denitrobacterium detoxificans gen. nov., sp. nov., a ruminal bacterium that respires on nitrocompounds. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 2), page(s): 633-638 | 10.1099/00207713-50-2-633 |
| Lawson2005 | summary, general characteristics, enzymes, metabolites | Slackia faecicanis | 2005 |
Lawson PA, Greetham HL, Gibson GR, Giffard C, Falsen E, Collins MD. |
Slackia faecicanis sp. nov., isolated from canine faeces. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 3), page(s): 1243-1246 | 10.1099/ijs.0.63531-0 |
| Danylec2019b | genetics | Gordonibacter faecihominis, Paraeggerthella hongkongensis, Parvibacter caecicola, Slackia equolifaciens, Slackia faecicanis, Slackia isoflavoniconvertens | 2019 |
Nicolas Danylec, Dominic A. Stoll, Andreas Dötsch, Melanie Huch |
Draft Genome Sequences of Type Strains of Gordonibacter faecihominis, Paraeggerthella hongkongensis, Parvibacter caecicola, Slackia equolifaciens, Slackia faecicanis, and Slackia isoflavoniconvertens. | Microbiology Resource Announcements | 8(2), page(s): e01532-18 | 10.1128/MRA.01532-18 |
| Mergaert1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Erwinia billingiae | 1999 |
Mergaert J, Hauben L, Cnockaert MC, Swings J. |
Reclassification of non-pigmented Erwinia herbicola strains from trees as Erwinia billingiae sp. nov. | International Journal of Systematic Bacteriology | 49(Pt 2), page(s): 377-383 | 10.1099/00207713-49-2-377 |
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Izard, D.; Gavini, F.; Trinel, P. A. and Leclerc, H. |
Deoxyribonucleic Acid Relatedness Between Enterobacter cloacae and Enterobacter amnigenus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 31(1), page(s): 35-42 | 10.1099/00207713-31-1-35 |
| Manter2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterobacter soli | 2011 |
Manter DK, Hunter WJ, Vivanco JM. |
Enterobacter soli sp. nov.: a lignin-degrading γ-proteobacteria isolated from soil. | Current Microbiology | 62(3), page(s): 1044-1049 | 10.1007/s00284-010-9809-9 |
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von Graevenitz A. |
Revised nomenclature of Campylobacter laridis, Enterobacter intermedium, and "Flavobacterium branchiophila". | International Journal of Systematic Bacteriology | 40(2), page(s): 211 | 10.1099/00207713-40-2-211 |
| Pavan2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Kluyvera intermedia | 2005 |
Pavan ME, Franco RJ, Rodriguez JM, Gadaleta P, Abbott SL, Janda JM, Zorzópulos J. |
Phylogenetic relationships of the genus Kluyvera: transfer of Enterobacter intermedius Izard et al. 1980 to the genus Kluyvera as Kluyvera intermedia comb. nov. and reclassification of Kluyvera cochleae as a later synonym of K. intermedia. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 437-442 | 10.1099/ijs.0.63071-0 |
| Brady2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pantoea vagans, Pantoea eucalypti, Pantoea deleyi, Pantoea anthophila | 2009 |
Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TA. |
Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov. | International Journal of Systematic Bacteriology | 59(Pt 9), page(s): 2339-2345 | 10.1099/ijs.0.009241-0 |
| Ricaboni2017 | summary, enzymes, metabolites | Acidaminococcus timonensis, Acidaminococcus massiliensis | 2017 |
Ricaboni D, Mailhe M, Benezech A, Cadoret F, Fournier PE, Raoult D. |
'Acidaminococcus timonensis' sp. nov. and 'Acidaminococcus massiliensis' sp. nov. isolated from human gut. | New Microbes New Infections | 15, page(s): 46-48 | 10.1016/j.nmni.2016.11.010 |
| Bilen2018e | gut microbiome | compilation | 2018 |
Melhem Bilen |
Description of the human gut microbiota by culturomics | Student thesis: Doctoral Thesis | page(s): 1-118 | |
| Bellali2019 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Corynebacterium pacaense, Alistipes megaguti, Alistipes provencensis | 2019 |
Bellali S, Naud S, Ndongo S, Lo CI, Anani H, Raoult D, Lagier JC. |
Corynebacterium pacaense sp. nov., Alistipes megaguti sp. nov., Alistipes provencensis sp. nov., 3 new bacteria isolated from fresh human stool specimens. | New Microbes New Infections | 32(100593), | 10.1016/j.nmni.2019.100593 |
| Rezgui2012 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Anaerosalibacter bizertensis | 2012 |
Rezgui R, Maaroufi A, Fardeau ML, Ben Ali Gam Z, Cayol JL, Ben Hamed S, Labat M. |
Anaerosalibacter bizertensis gen. nov., sp. nov., a halotolerant bacterium isolated from sludge. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 10), page(s): 2469-2474 | 10.1099/ijs.0.036566-0 |
| Sarr2021 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Bacillus marasmi | 2021 |
Sarr M, Diouf FS, Lo CI, Tidjani Alou M, Alibar S, Million M, Sokhna C, Fenollar F. |
Taxonogenomics description of Bacillus marasmi sp. nov., a new species isolated from the stool sample. | New Microbes New Infections | 42(100906), | 10.1016/j.nmni.2021.100906 |
| Traore2017a | summary, general characteristics, enzymes | Arabia massiliensis, Gordonibacter massiliensis, Bacilliculturomica massiliensis | 2017 |
Traore SI, Azhar EI, Yasir M, Bibi F, Fournier PE, Jiman-Fatani AA, Delerce J, Cadoret F, Lagier JC, Raoult D. |
Description of 'Arabia massiliensis' gen. nov., sp. nov., 'Gordonibacter massiliensis' sp. nov., and 'Bacilliculturomica massiliensis' gen. nov., sp. nov., isolated from a faecal specimen of a 50-year-old Saudi Bedouin woman. | New Microbes New Infections | 19, page(s): 87-90 | 10.1016/j.nmni.2017.05.011 |
| Ngom2019 | summary, general characteristics, enzymes, acid from carbohydrates | Gordonibacter massiliensis | 2019 |
Ngom II, Hasni I, Lo CI, Traore SI, Fontanini A, Raoult D, Fenollar F. |
Taxono-genomics and description of Gordonibacter massiliensis sp. nov., a new bacterium isolated from stool of healthy patient. | New Microbes New Infections | 33(100624), | 10.1016/j.nmni.2019.100624 |
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Pettersson B, Lembke F, Hammer P, Stackebrandt E, Priest FG. |
Bacillus sporothermodurans, a new species producing highly heat-resistant endospores. | International Journal of Systematic and Evolutionary Microbiology | 46(3), page(s): 759-764 | 10.1099/00207713-46-3-759 |
| Heyndrickx2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus sporothermodurans, Bacillus oleronius | 2012 |
Heyndrickx M, Coorevits A, Scheldeman P, Lebbe L, Schumann P, Rodríguez-Diaz M, Forsyth G, Dinsdale A, Heyrman J, Logan NA, De Vos P. |
Emended descriptions of Bacillus sporothermodurans and Bacillus oleronius with the inclusion of dairy farm isolates of both species. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 2), page(s): 307-314 | 10.1099/ijs.0.026740-0 |
| ScholtenKoerselman1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides xylanolyticus | 1986 |
Scholten-Koerselman I, Houwaard F, Janssen P, Zehnder AJ. |
Bacteroides xylanolyticus sp. nov., a xylanolytic bacterium from methane producing cattle manure. | Antonie van Leeuwenhoek | 52(6), page(s): 543-554 | 10.1007/BF00423415 |
| Durand2017c | summary, general characteristics, enzymes | Bittarella massiliensis | 2017 |
Durand GA, Fournier PE, Raoult D, Edouard S. |
'Bittarella massiliensis' gen. nov., sp. nov. isolated by culturomics from the gut of a healthy 28-year-old man. | New Microbes New Infections | 16, page(s): 28-29 | 10.1016/j.nmni.2016.12.014 |
| Ahrens1970 | Blastococcus aggregatus | 1970 |
Ahrens R, Moll G. |
Ein neues knospendes Bakterium aus der Ostee [A new budding bacterium from the Baltic Sea]. | Archiv fur Mikrobiologie | 70(3), page(s): 243-265 | 5437119 PMID | |
| Hezbri2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Blastococcus capsensis, Blastococcus aggregatus, Blastococcus saxobsidens, Blastococcus jejuensis, Blastococcus endophyticus | 2016 |
Hezbri K, Louati M, Nouioui I, Gtari M, Rohde M, Spröer C, Schumann P, Klenk HP, Ghodhbane-Gtari F, Montero-Calasanz MDC. |
Blastococcus capsensis sp. nov., isolated from an archaeological Roman pool and emended description of the genus Blastococcus, B. aggregatus, B. saxobsidens, B. jejuensis and B. endophyticus. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4864-4872 | 10.1099/ijsem.0.001443 |
| Urzi2004 | Blastococcus saxobsidens, Blastococcus aggregatus | 2004 |
Urzì C, Salamone P, Schumann P, Rohde M, Stackebrandt E. |
Blastococcus saxobsidens sp. nov., and emended descriptions of the genus Blastococcus Ahrens and Moll 1970 and Blastococcus aggregatus Ahrens and Moll 1970. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 1), page(s): 253-259 | 10.1099/ijs.0.02745-0 | |
| Lawson1974 | health, educational | Campylobacter mucosalis | 1974 |
Lawson GH, Rowland AC. |
Intestinal adenomatosis in the pig: a bacteriological study. | Research in Veternary Science | 17(3), page(s): 331-336 | 4614347 PMID |
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Vandamme P, On SL. |
Recommendations of the subcommittee on the taxonomy of Campylobacter and related bacteria. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 2), page(s): 719-721 | 10.1099/00207713-51-2-719 |
| Lawson1981 | summary, general characteristics, utilisation | Campylobacter mucosalis | 1981 |
Lawson, GHK; Leaver, JL; Pettigrew, GW and Rowland, AC |
Some Features of Campylobacter sputorum subsp. mucosalis subsp. nov., nom. rev. and Their Taxonomic Significance | International Journal of Systematic and Evolutionary Microbiology | 31(4), page(s): 385-391 | 10.1099/00207713-31-4-385 |
| Roop1985 | summary, general characteristics, enzymes, metabolites, antibiotics | Campylobacter mucosalis | 1985 |
Roop, R. Martin; Smibert, R. M.; Johnson, John L. and Krieg, Noel R. |
Campylobacter mucosalis (Lawson, Leaver, Pettigrew, and Rowland 1981) comb. nov.: Emended Description | International Journal of Systematic and Evolutionary Microbiology | 35(2), page(s): 189-192 | 10.1099/00207713-35-2-189 |
| Kaur2011 | summary, general characteristics, enzymes, metabolites, antibiotics | Campylobacter troglodytis | 2011 |
Kaur T, Singh J, Huffman MA, Petrzelková KJ, Taylor NS, Xu S, Dewhirst FE, Paster BJ, Debruyne L, Vandamme P, Fox JG. |
Campylobacter troglodytis sp. nov., isolated from feces of human-habituated wild chimpanzees (Pan troglodytes schweinfurthii) in Tanzania. | Applied and Environmental Microbiology | 77(7), page(s): 2366-2373 | 10.1128/AEM.01840-09 |
| Neubauer1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Corynebacterium accolens | 1991 |
Miloslav Neubauer, Jiri Sourek, Milos Ryc, Jiri Bohacek, Milan Mara, Jana Mnukova |
Corynebacterium accolens sp. nov., a Gram-Positive Rod Exhibiting Satellitism, from Clinical Material. | Systematic and Applied Microbiology | 14(1), page(s): 46-51 | 10.1016/S0723-2020(11)80360-7 |
| Barksdale1979 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Corynebacterium flavescens | 1979 |
Barksdale, L.; Lanéelle, M.-A.; Pollice, M. C. ; Asselineau, J.; Welby, M. and Norgard, M. V. |
Biological and Chemical Basis for the Reclassification of Microbacterium flavum Orla-Jensen as Corynebacterium flavescens nom. nov. | International Journal of Systematic and Evolutionary Microbiology | 29(3), page(s): 222-233 | 10.1099/00207713-29-3-222 |
| Collins1987a | summary, general characteristics, enzymes, utilisation | Corynebacterium variabile | 1987 |
Collins, MD |
Transfer of Arthrobacter variabilis (Müller) to the Genus Corynebacterium, as Corynebacterium variabilis comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 37(3), page(s): 287-288 | 10.1099/00207713-37-3-287 |
| Gelsomino2005 | genetics, taxonomy | Corynebacterium variabile | 2005 |
Gelsomino R, Vancanneyt M, Snauwaert C, Vandemeulebroecke K, Hoste B, Cogan TM, Swings J. |
Corynebacterium mooreparkense, a later heterotypic synonym of Corynebacterium variabile. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 3), page(s): 1129-1131 | 10.1099/ijs.0.63420-0 |
| Brennan2001b | summary, general characteristics, enzymes, acid from carbohydrates, fermented foods | Corynebacterium mooreparkense, Corynebacterium casei | 2001 |
Brennan NM, Brown R, Goodfellow M, Ward AC, Beresford TP, Simpson PJ, Fox PF, Cogan TM. |
Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 843-852 | 10.1099/00207713-51-3-843 |
| Ndongo2016c | summary, general characteristics | Culturomica massiliensis | 2016 |
Ndongo S, Lagier JC, Fournier PE, Raoult D, Khelaifia S. |
'Culturomica massiliensis', a new bacterium isolated from the human gut. | New Microbes New Infections | 13, page(s): 60-61 | 10.1016/j.nmni.2016.06.010 |
| Shigematsu2003 | summary, general characteristics, enzymes, utilisation | Delftia tsuruhatensis | 2003 |
Shigematsu T, Yumihara K, Ueda Y, Numaguchi M, Morimura S, Kida K. |
Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1479-1483 | 10.1099/ijs.0.02285-0 |
| Jorgensen2009 | summary, general characteristics, utilisation, water source | Delftia tsuruhatensis, Delftia lacustris | 2009 |
Jørgensen NO, Brandt KK, Nybroe O, Hansen M. |
Delftia lacustris sp. nov., a peptidoglycan-degrading bacterium from fresh water, and emended description of Delftia tsuruhatensis as a peptidoglycan-degrading bacterium. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 9), page(s): 2195-2199 | 10.1099/ijs.0.008375-0 |
| Kosako1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterobacter kobei | 1996 |
Kosako Y, Tamura K, Sakazaki R, Miki K. |
Enterobacter kobei sp. nov., a new species of the family Enterobacteriaceae resembling Enterobacter cloacae. | Current Microbiology | 33(4), page(s): 261-265 | 10.1007/s002849900110 |
| Svec2005 | summary, general characteristics, enzymes, acid from carbohydrates | Enterococcus devriesei | 2005 |
Svec P, Vancanneyt M, Koort J, Naser SM, Hoste B, Vihavainen E, Vandamme P, Swings J, Bjorkroth J. |
Enterococcus devriesei sp. nov., associated with animal sources. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 6), page(s): 2479-2484 | 10.1099/ijs.0.63851-0 |
| Kim2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus diestrammenae | 2013 |
Kim JY, Shin NR, Na HK, Hyun DW, Whon TW, Kim PS, Yun JH, Bae JW. |
Enterococcus diestrammenae sp. nov., isolated from the gut of Diestrammena coreana. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 12), page(s): 4540-4545 | 10.1099/ijs.0.050062-0 |
| Takakura2019b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus mediterraneensis | 2019 |
Takakura T, Francis R, Anani H, Bilen M, Raoult D, Bou Khalil JY. |
Enterococcus mediterraneensis sp. nov., a new bacterium isolated from the stool of a 39-year-old Pygmy. | New Microbes New Infections | 32(100599), | 10.1016/j.nmni.2019.100599 |
| Carvalho2008 | blood infection | Enterococcus sanguinicola, Enterococcus italicus | 2008 |
Carvalho Mda G, Steigerwalt AG, Morey RE, Shewmaker PL, Falsen E, Facklam RR, Teixeira LM. |
Designation of the provisional new enterococcus species CDC PNS-E2 as Enterococcus sanguinicola sp. nov., isolated from human blood, and identification of a strain previously named Enterococcus CDC PNS-E1 as Enterococcus italicus Fortina, Ricci, Mora, and Manachini 2004. | Journal of Clinical Microbiology | 46(10), page(s): 3473-3476 | 10.1128/JCM.00603-08 |
| Shewmaker2011 | summary, general characteristics, acid from carbohydrates | Enterococcus thailandicus | 2011 |
Shewmaker PL, Steigerwalt AG, Nicholson AC, Carvalho Mda G, Facklam RR, Whitney AM, Teixeira LM. |
Reevaluation of the taxonomic status of recently described species of Enterococcus: evidence that E. thailandicus is a senior subjective synonym of "E. sanguinicola" and confirmation of E. caccae as a species distinct from E. silesiacus. | Journal of Clinical Microbiology | 49(7), page(s): 2676-2679 | 10.1128/JCM.00399-11 |
| Tanasupawat2008 | summary, general characteristics, acid from carbohydrates, fermented foods | Enterococcus thailandicus | 2008 |
Tanasupawat S, Sukontasing S, Lee JS. |
Enterococcus thailandicus sp. nov., isolated from fermented sausage ('mum') in Thailand. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 7), page(s): 1630-1634 | 10.1099/ijs.0.65535-0 |
| Carvalho2004 | summary, general characteristics, acid from carbohydrates, clinical sources | Enterococcus thailandicus, Enterococcus italicus | 2004 |
Carvalho Mda G, Steigerwalt AG, Morey RE, Shewmaker PL, Teixeira LM, Facklam RR. |
Characterization of three new enterococcal species, Enterococcus sp. nov. CDC PNS-E1, Enterococcus sp. nov. CDC PNS-E2, and Enterococcus sp. nov. CDC PNS-E3, isolated from human clinical specimens. | Journal of Clinical Microbiology | 42(3), page(s): 1192-1198 | 10.1128/JCM.42.3.1192-1198.2004 |
| Mourembou2016a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Gabonibacter massiliensis | 2016 |
Mourembou G, Rathored J, Lekana-Douki JB, Ndjoyi-Mbiguino A, Khelaifia S, Robert C, Armstrong N, Raoult D, Fournier PE. |
Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota. | Current Microbiology | 73(6), page(s): 867-877 | 10.1007/s00284-016-1137-2 |
| Mourembou2016b | summary, general characteristics | Intestinimonas gabonensis | 2016 |
Mourembou G, Ndjoyi-Mbiguino A, Rathored J, Lekana-Douki JB, Fournier PE, Raoult D, Lagier JC. |
"Intestinimonas gabonensis" sp. nov., a new bacterium detected from a Gabonese stool specimen. | New Microbes New Infections | 15, page(s): 24-26 | 10.1016/j.nmni.2016.10.005 |
| Haakensen2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus dextrinicus | 2009 |
Haakensen M, Dobson CM, Hill JE, Ziola B. |
Reclassification of Pediococcus dextrinicus (Coster and White 1964) back 1978 (Approved Lists 1980) as Lactobacillus dextrinicus comb. nov., and emended description of the genus Lactobacillus. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 3), page(s): 615-621 | 10.1099/ijs.0.65779-0 |
| Coster1964 | summary, general characteristics, acid from carbohydrates, metabolites | Lapidilactobacillus dextrinicus | 1964 |
Coster E, White HR. |
Further Studies Of The Genus Pediococcus. | Journal of General Microbiology | 37, page(s): 15-31 | 10.1099/00221287-37-1-15 |
| Back1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lapidilactobacillus dextrinicus | 1978 |
Back, Werner |
Elevation of Pediococcus cerevisiae subsp. dextrinicus Coster and White to Species Status [Pediococcus dextrinicus (Coster and White) comb. nov.] | International Journal of Systematic and Evolutionary Microbiology | 28(4), page(s): 523-527 | 10.1099/00207713-28-4-523 |
| Miyamoto2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus harbinensis, Lactobacillus perolens | 2005 |
Miyamoto M, Seto Y, Hao DH, Teshima T, Sun YB, Kabuki T, Yao LB, Nakajima H. |
Lactobacillus harbinensis sp. nov., consisted of strains isolated from traditional fermented vegetables 'Suan cai' in Harbin, Northeastern China and Lactobacillus perolens DSM 12745. | Systematic and Applied Microbiology | 28(8), page(s): 688-694 | 10.1016/j.syapm.2005.04.001 |
| Ndongo2017a | summary, general characteristics | Collinsella phocaeensis, Clostridium merdae, Sutterella massiliensis, Sutterella timonensis, Enorma phocaeensis, Mailhella massiliensis, Mordavella massiliensis, Massiliprevotella massiliensis | 2017 |
Ndongo S, Cadoret F, Dubourg G, Delerce J, Fournier PE, Raoult D, Lagier JC. |
'Collinsella phocaeensis' sp. nov., 'Clostridium merdae' sp. nov., 'Sutterella massiliensis' sp. nov., 'Sutturella timonensis' sp. nov., 'Enorma phocaeensis' sp. nov., 'Mailhella massiliensis' gen. nov., sp. nov., 'Mordavella massiliensis' gen. nov., sp. nov. and 'Massiliprevotella massiliensis' gen. nov., sp. nov., 9 new species isolated from fresh stool samples of healthy French patients. | New Microbes New Infections | 17, page(s): 89-95 | 10.1016/j.nmni.2017.02.005 |
| Traore2017b | summary, general characteristics | Beduinibacterium massiliense, Massilimaliae massiliensis, Provencibacterium massiliense, Oscillibacter massiliensis | 2017 |
Traore SI, Azhar EI, Yasir M, Bibi F, Fournier PE, Jiman-Fatani AA, Delerce J, Cadoret F, Lagier JC, Raoult D. |
Description of 'Beduinibacterium massiliense' gen. nov., sp. nov., 'Massilimaliae massiliensis' gen. nov., sp. nov., 'Provencibacterium massiliense' gen. nov., sp. nov. and 'Oscilibacter massiliensis' sp. nov., isolated from a faecal specimen of a 19-year-old healthy Saudi Arabian Bedouin by culturomics. | New Microbes New Infections | 19, page(s): 78-82 | 10.1016/j.nmni.2017.05.001 |
| Afouda2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Massiliimalia massiliensis, Massiliimalia timonensis | 2019 |
Afouda P, Traore SI, Dione N, Andrieu C, Tomei E, Richez M, Di Pinto F, Lagier JC, Dubourg G, Raoult D, Fournier PE. |
Description and genomic characterization of Massiliimalia massiliensis gen. nov., sp. nov., and Massiliimalia timonensis gen. nov., sp. nov., two new members of the family Ruminococcaceae isolated from the human gut. | Antonie van Leeuwenhoek | 112(6), page(s): 905-918 | 10.1007/s10482-018-01223-x |
| Ricaboni2016b | summary, general characteristics | Negativibacillus massiliensis | 2016 |
Ricaboni D, Mailhe M, Vitton V, Andrieu C, Fournier PE, Raoult D. |
"Negativibacillus massiliensis" gen. nov., sp. nov., isolated from human left colon. | New Microbes New Infections | 17, page(s): 36-38 | 10.1016/j.nmni.2016.11.002 |
| Valles2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Negativibacillus massiliensis | 2021 |
Valles, Camille and Mailhe, Morgane and Ricaboni, Davide and Armstrong, Nicholas and Alibar, Stéphane and Vitton, Véronique and Lagier, Jean-Christophe and Raoult, Didier and Tidjani Alou, Maryam |
Negativibacillus massiliensis gen. nov., sp. nov., a New Bacterial Genus Isolated from a Human Left Colon Sample | MDPI Microbiology Research | 12(1), page(s): 29-42 | 10.3390/microbiolres12010004 |
| Bilen2017i | summary, general characteristics | Olsenella congonensis | 2017 |
Bilen M, Cadoret F, Dubourg G, Daoud Z, Fournier PE, Raoult D. |
'Olsenella congonensis' sp.nov., identified in human stool sample. | New Microbes New Infections | 19, page(s): 132-133 | 10.1016/j.nmni.2017.05.013 |
| Ndongo2019 | summary, general characteristics | Olsenella timonensis | 2019 |
Ndongo S, Tall ML, Ngom II, Delerce J, Levasseur A, Raoult D, Fournier PE, Khelaifia S. |
Olsenella timonensis sp. nov., a new bacteria species isolated from the human gut microbiota. | New Microbes New Infections | 32(100610), | 10.1016/j.nmni.2019.100610 |
| Bellali2019a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Parabacteroides massiliensis | 2019 |
Bellali S, Lo CI, Naud S, Fonkou MDM, Armstrong N, Raoult D, Fournier PE, Fenollar F. |
Parabacteroides massiliensis sp. nov., a new bacterium isolated from a fresh human stool specimen. | New Microbes New Infections | 32(100602), | 10.1016/j.nmni.2019.100602 |
| Aujoulat2021 | clinical sources | Peptoniphilus nemausensis, Peptoniphilus phoceensis, Peptoniphilus senegalensis | 2021 |
Aujoulat F, Mazuet C, Criscuolo A, Popoff MR, Enault C, Diancourt L, Jumas-Bilak E, Lavigne JP, Marchandin H. |
Peptoniphilus nemausensis sp. nov. A new Gram-positive anaerobic coccus isolated from human clinical samples, an emendated description of the genus Peptoniphilus and an evaluation of the taxonomic status of Peptoniphilus species with not validly published names. | Systematic and Applied Microbiology | 44(5), page(s): 126235 | 10.1016/j.syapm.2021.126235 |
| Mourembou2016c | summary, general characteristics, enzymes | Peptoniphilus phoceensis | 2016 |
Mourembou G, Traore SI, Rathored J, Khelaifia S, Lagier JC, Michelle C, Raoult D, Million M. |
Isolation of new species "Peptoniphilus phoceensis" from human gut. | New Microbes New Infections | 12, page(s): 52-53 | 10.1016/j.nmni.2016.04.002 |
| Whitehead2011 | summary, general characteristics, enzymes, metabolites | Peptostreptococcus russellii | 2011 |
Whitehead TR, Cotta MA, Falsen E, Moore E, Lawson PA. |
Peptostreptococcus russellii sp. nov., isolated from a swine-manure storage pit. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 8), page(s): 1875-1879 | 10.1099/ijs.0.023762-0 |
| Ndongo2016d | summary | Phocea massiliensis | 2016 |
Ndongo S, Lagier JC, Fournier PE, Raoult D, Khelaifia S. |
'Phocea massiliensis' a new bacterial species isolated from the human gut. | New Microbes New Infections | 13, page(s): 67-68 | 10.1016/j.nmni.2016.06.009 |
| Ndongo2016e | summary, general characteristics | Prevotellamassilia timonensis | 2016 |
Ndongo S, Lagier JC, Fournier PE, Raoult D, Khelaifia S. |
"Prevotellamassilia timonensis," a new bacterial species isolated from the human gut. | New Microbes New Infections | 13, page(s): 102-103 | 10.1016/j.nmni.2016.06.014 |
| Muller1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Providencia heimbachae | 1986 |
Müller, H. E. and O'hara, C. M. and Fanning, G. R. and Hickman-Brenner, F. W. and Swenson, J. M. and Brenner, Don J. |
Providencia heimbachae, a New Species of Enterobacteriaceae Isolated from Animals | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 252-256 | 10.1099/00207713-36-2-252 |
| Molin1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food contamination | Pseudomonas lundensis | 1986 |
Molin, G. and Ternström, A. and Ursing, J. |
Notes: Pseudomonas lundensis, a New Bacterial Species Isolated from Meat | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 339-342 | 10.1099/00207713-36-2-339 |
| Afouda2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudoruminococcus massiliensis | 2020 |
Afouda P, Dubourg G, Nguyen TT, Raoult D, Fournier PE. |
Pseudoruminococcus massiliensis gen. nov., sp. nov., a new bacterium isolated from the human gut microbiota. | New Microbes New Infections | 34(100645), | 10.1016/j.nmni.2019.100645 |
| Kampfer2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Psychrobacter faecalis | 2002 |
Kämpfer P, Albrecht A, Buczolits S, Busse HJ. |
Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces. | Systematic and Applied Microbiology | 24(1), page(s): 31-36 | 10.1078/0723-2020-00099 |
| Deschaght2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Psychrobacter faecalis, Psychrobacter pulmonis, Psychrobacter phenylpyruvicus | 2012 |
Deschaght P, Janssens M, Vaneechoutte M, Wauters G. |
Deschaght P, Janssens M, Vaneechoutte M, Wauters G. Psychrobacter isolates of human origin, other than Psychrobacter phenylpyruvicus, are predominantly Psychrobacter faecalis and Psychrobacter pulmonis, with emended description of P. faecalis. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 3), page(s): 671-674 | 10.1099/ijs.0.032631-0 |
| Her2013 | summary, general characteristics, enzymes, metabolites, utilisation | Rummeliibacillus suwonensis | 2013 |
Her J, Kim J. |
Rummeliibacillus suwonensis sp. nov., isolated from soil collected in a mountain area of South Korea. | Journal of Microbiology (Seoul, Korea) | 51(2), page(s): 268-272 | 10.1007/s12275-013-3126-5 |
| Assih2002 | summary, general characteristics, enzymes, antibiotics, utilisation | Stenotrophomonas acidaminiphila | 2002 |
Assih EA, Ouattara AS, Thierry S, Cayol JL, Labat M, Macarie H. |
Stenotrophomonas acidaminiphila sp. nov., a strictly aerobic bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 2), page(s): 559-568 | 10.1099/00207713-52-2-559 |
| Patil2016 | genetics, taxonomy | Stenotrophomonas acidaminiphila | 2016 |
Patil PP, Midha S, Kumar S, Patil PB. |
Genome Sequence of Type Strains of Genus Stenotrophomonas. | Frontiers in Microbiology | 7, page(s): 309 | 10.3389/fmicb.2016.00309 |
| Mailhe2016a | summary, general characteristics | Tidjanibacter massiliensis | 2016 |
Mailhe M, Ricaboni D, Benezech A, Lagier JC, Fournier PE, Raoult D. |
'Tidjanibacter massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human colon. | New Microbes New Infections | 17, page(s): 21-22 | 10.1016/j.nmni.2016.12.010 |
| Collins1989b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Vagococcus fluvialis | 1989 |
Collins MD, Ash C, Farrow JA, Wallbanks S, Williams AM. |
16S ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. | Journal of Applied Bacteriology | 67(4), page(s): 453-460 | 10.1111/j.1365-2672.1989.tb02516.x |
| Lawson1999 | summary, general characteristics, enzymes, acid from carbohydrates | Vagococcus lutrae | 1999 |
Lawson PA, Foster G, Falsen E, Ohlén M, Collins MD. |
Vagococcus lutrae sp. nov., isolated from the common otter (Lutra lutra). | International Journal of Systematic Bacteriology | 49(Pt 3), page(s): 1251-1254 | 10.1099/00207713-49-3-1251 |
| Finegold1974 | gut microbiome, compilation | compilation | 1974 |
Sydney M. Finegold, Howard R. Attebery and Vera L. Sutter |
Effect of diet on human fecal flora: comparison of Japanese and American diets | The American Journal of Clinical Nutrition | 27(12), page(s): 1456-1469 | 10.1093/ajcn/27.12.1456 |
| Nomura1999 | summary, general characteristics, enzymes, acid from carbohydrates | Lactococcus cremoris | 1999 |
Nomura M, Kimoto H, Someya Y, Suzuki I. |
Novel characteristic for distinguishing Lactococcus lactis subsp. lactis from subsp. cremoris. | International Journal of Systematic Bacteriology | 49(Pt 1), page(s): 163-166 | 10.1099/00207713-49-1-163 |
| Li2019a | summary, general characteristics, genetics, taxonomy | Lactococcus cremoris, Lactococcus cremoris subsp. tructae | 2019 |
Li TT, Tian WL, Gu CT. |
Elevation of Lactococcus lactis subsp. cremoris to the species level as Lactococcus cremoris sp. nov. and transfer of Lactococcus lactis subsp. tructae to Lactococcus cremoris as Lactococcus cremoris subsp. tructae comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 71(3), page(s): Epub 2021 | 10.1099/ijsem.0.004727 |
| Garvie1982 | summary, general characteristics, enzymes, acid from carbohydrates | Streptococcus cremoris | 1982 |
Garvie, Ellen I. and Farrow, John AE. |
NOTES: Streptococcus lactis subsp. cremoris (Orla-Jensen) comb. nov. and Streptococcus lactis subsp. diacetilactis (Matuszewski et al.) nom. rev., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 32(4), page(s): 453-455 | 10.1099/00207713-32-4-453 |
| Watanabe1981 | gut microbiome | Streptococcus faecalis, Streptococcus faecium, Streptococcus durans, Streptococcus bovis, Streptococcus equinus, Streptococcus avium, Streptococcus salivarius, Streptococcus sanguinis, Streptococcus mitis, Streptococcus intermedius | 1981 |
Watanabe T, Shimohashi H, Kawai Y, Mutai M. |
Studies on streptococci. I. Distribution of fecal streptococci in man. | Microbiology and Immunology | 25(3), page(s): 257-269 | 10.1111/j.1348-0421.1981.tb00028.x |
| SelberHnatiw2020 | cardiovascular disease(+), atherosclerosis(+) | Klebsiella pneumoniae, Proteus vulgaris, Pseudomonas aeruginosa, Anaerococcus hydrogenalis, Enterocloster asparagiformis, Hungatella hathewayi, Clostridium sporogenes, Escherichia fergusonii, Proteus penneri, Edwardsiella tarda, Providencia rettgeri | 2020 |
Selber-Hnatiw S, et. al |
Metabolic networks of the human gut microbiota. | Microbiology | 166(2), page(s): 96-119 | 10.1099/mic.0.000853 |
| Ricaboni2016c | summary, general characteristics | Colidextribacter massiliensis | 2016 |
Ricaboni D, Mailhe M, Cadoret F, Vitton V, Fournier PE, Raoult D. |
'Colidextribacter massiliensis' gen. nov., sp. nov., isolated from human right colon. | New Microbes New Infections | 17, page(s): 27-29 | 10.1016/j.nmni.2016.11.023 |
| Mailhe2016b | summary, general characteristics | Duodenibacillus massiliensis | 2016 |
Mailhe M, Ricaboni D, Benezech A, Lagier JC, Fournier PE, Raoult D. |
'Duodenibacillus massiliensis' gen. nov., sp. nov., a new species identified in human duodenum. | New Microbes New Infections | 17, page(s): 43-44 | 10.1016/j.nmni.2016.11.024 |
| Ricaboni2016d | summary, general characteristics, enzymes, metabolites | Intestinibacillus massiliensis | 2016 |
Ricaboni D, Mailhe M, Vitton V, Cadoret F, Fournier PE, Raoult D. |
'Intestinibacillus massiliensis' gen. nov., sp. nov., isolated from human left colon. | New Microbes New Infections | 17, page(s): 18-20 | 10.1016/j.nmni.2016.12.008 |
| Lo2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Massilioclostridium coli | 2017 |
Lo CI, Mailhe M, Ricaboni D, Vitton V, Benezech A, Michelle C, Armstrong N, Bittar F, Fournier PE, Raoult D, Lagier JC. |
Massilioclostridium coli gen. nov., sp. nov., a new member of the Clostridiaceae family isolated from the left colon of a 27-year-old woman. | New Microbes New Infections | 16, page(s): 63-72 | 10.1016/j.nmni.2017.01.004 |
| Madden1983 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium stercorarium | 1983 |
Madden, Robert H. |
Isolation and Characterization of Clostridium stercorarium sp. nov., Cellulolytic Thermophile | International Journal of Systematic and Evolutionary Microbiology | 33(4), page(s): 837-840 | 10.1099/00207713-33-4-837 |
| Aujoulat2014 | gut microbiome, premature infants, compilation | compilation | 2014 |
Aujoulat F, Roudière L, Picaud JC, Jacquot A, Filleron A, Neveu D, Baum TP, Marchandin H, Jumas-Bilak E. |
Temporal dynamics of the very premature infant gut dominant microbiota. | BMC Microbiology | 14, page(s): 325 | 10.1186/s12866-014-0325-0 |
| Wang2020 | gastric mucosa, gastric carcinoma | Aquincola tertiaricarbonis, Acinetobacter johnsonii | 2020 |
Wang Z, Gao X, Zeng R, Wu Q, Sun H, Wu W, Zhang X, Sun G, Yan B, Wu L, Ren R, Guo M, Peng L, Yang Y. |
Changes of the Gastric Mucosal Microbiome Associated With Histological Stages of Gastric Carcinogenesis. | Frontiers in Microbiology | 11, page(s): 997 | 10.3389/fmicb.2020.00997 |
| De2020 | gut microbiome, diarrhoea, compilation | compilation | 2020 |
De R, Mukhopadhyay AK, Dutta S. |
Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter. | Gut Pathogens | 12, page(s): 32 | 10.1186/s13099-020-00371-8 |
| Yang2020 | gut microbiome, compilation | compilation | 2020 |
Yang J, Pu J, Lu S, Bai X, Wu Y, Jin D, Cheng Y, Zhang G, Zhu W, Luo X, Rosselló-Móra R, Xu J. |
Species-Level Analysis of Human Gut Microbiota With Metataxonomics. | Frontiers in Microbiology | 11, page(s): 2029 | 10.3389/fmicb.2020.02029 |
| Sarr2020 | summary, general characteristics, enzymes, acid from carbohydrates | Bacillus dakarensis, Bacillus sinesaloumensis, Bacillus massiliogabonensis | 2020 |
Sarr M, Lo CI, Tall ML, Fadlane A, Senghor B, Sokhna C, Raoult D, Million M, Fenollar F. |
Taxonogenomics description of Bacillus dakarensis sp. nov., Bacillus sinesaloumensis sp. nov. and Bacillus massiliogabonensis sp. nov., three new species isolated from human stools. | New Microbes New Infections | 37(100717), | 10.1016/j.nmni.2020.100718 |
| Elsayed2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, blood infection | Clostridium intestinale | 2005 |
Elsayed S, Zhang K. |
Bacteremia caused by Clostridium intestinale. | Journal of Clinical Microbiology | 43(4), page(s): 2018-2020 | 10.1128/JCM.43.4.2018-2020.2005 |
| Mailhe2017a | summary, general characteristics | Angelakisella massiliensis | 2017 |
Mailhe M, Ricaboni D, Vitton V, Cadoret F, Fournier PE, Raoult D. |
'Angelakisella massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human ileum. | New Microbes New Infections | 16, page(s): 51-53 | 10.1016/j.nmni.2017.01.003 |
| Lagier2016 | gut microbiome, compilation | compilation, Neofamilia massiliensis | 2016 |
Lagier JC, Khelaifia S, Alou MT, Ndongo S, Dione N, Hugon P, Caputo A, Cadoret F, Traore SI, Seck EH, Dubourg G, Durand G, Mourembou G, Guilhot E, Togo A, Bellali S, Bachar D, Cassir N, Bittar F, Delerce J, Mailhe M, Ricaboni D, Bilen M, Dangui Nieko NP, Dia Badiane NM, Valles C, Mouelhi D, Diop K, Million M, Musso D, Abrahão J, Azhar EI, Bibi F, Yasir M, Diallo A, Sokhna C, Djossou F, Vitton V, Robert C, Rolain JM, La Scola B, Fournier PE, Levasseur A, Raoult D. |
Culture of previously uncultured members of the human gut microbiota by culturomics. | Nature Microbiology | 1(16203), | 10.1038/nmicrobiol.2016.203 |
| Sievers2005 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Acetobacter pasteurianus | 2005 |
Martin Sievers and Jean Swings |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Acetobacteraceae, Genus I. Acetobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 51-54 | ISBN-13: 978-0387-24145-6 |
| Carr2003 | summary, general characteristics, enzymes, utilisation, quirks | Acinetobacter towneri | 2003 |
Carr EL, Kämpfer P, Patel BKC, Gürtler V, Seviour RJ. |
Seven novel species of Acinetobacter isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 953-963 | 10.1099/ijs.0.02486-0 |
| Mutters1986 | genetics, taxonomy | Actinobacillus ureae | 1986 |
Mutters, R. and Pohl, S. and Mannheim, W. |
Transfer of Pasteurella ureae Jones 1962 to the Genus Actinobacillus Brumpt 1910: Actinobacillus ureae comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 343-344 | 10.1099/00207713-36-2-343 |
| Greub2002 | summary, general characteristics, enzymes, acid from carbohydrates, quirks, urinary tract infection | Actinobaculum massiliense | 2002 |
Greub G, Raoult D. |
"Actinobaculum massiliae," a new species causing chronic urinary tract infection. | Journal of Clinical Microbiology | 40(11), page(s): 3938-3941 | 10.1128/JCM.40.11.3938-3941.2002 |
| Yassin2015 | summary, general characteristics, enzymes, acid from carbohydrates | Actinobaculum massiliense, Actinobaculum urinale, Actinobaculum schaalii | 2015 |
Yassin AF, Spröer C, Pukall R, Sylvester M, Siering C, Schumann P. |
Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T ( = DSM 19118T), revealing that it does not represent a strain of this species. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 2), page(s): 615-624 | 10.1099/ijs.0.069294-0 |
| Hall2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks, oral cavity | Actinomyces dentalis | 2005 |
Hall V, Collins MD, Lawson PA, Falsen E, Duerden BI. |
Actinomyces dentalis sp. nov., from a human dental abscess. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 427-431 | 10.1099/ijs.0.63376-0 |
| Ndongo2016f | HIV | Actinomyces ihumii | 2016 |
Ndongo S, Khelaifia S, Bittar F, Fournier PE, Raoult D. |
"Actinomyces ihumii," a new bacterial species isolated from the digestive microbiota of a HIV-infected patient. | New Microbes New Infections | 12, page(s): 71-72 | 10.1016/j.nmni.2016.04.013 |
| Lee2007 | summary, general characteristics, enzymes, metabolites, utilisation | Aeromicrobium tamlense | 2007 |
Lee SD, Kim SJ. |
Aeromicrobium tamlense sp. nov., isolated from dried seaweed. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 2), page(s): 337-341 | 10.1099/ijs.0.64442-0 |
| Esteve1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aeromonas encheleia | 1995 |
Esteve C, Gutiérrez MC, Ventosa A. |
Aeromonas encheleia sp. nov., isolated from European eels. | International Journal of Systematic Bacteriology | 45(3), page(s): 462-466 | 10.1099/00207713-45-3-462 |
| Huys1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Aeromonas encheleia, Aeromonas eucrenophila | 1997 |
Huys G, Kämpfer P, Altwegg M, Coopman R, Janssen P, Gillis M, Kersters K. |
Inclusion of Aeromonas DNA hybridization group 11 in Aeromonas encheleia and extended descriptions of the species Aeromonas eucrenophila and A. encheleia. | International Journal of Systematic Bacteriology | 47(4), page(s): 1157-1164 | 10.1099/00207713-47-4-1157 |
| MartinezMurcia1999 | genetics, taxonomy | Aeromonas encheleia, Aeromonas popoffii, Aeromonas DNA hybridization group 11, Aeromonas group 501 | 1999 |
Martínez-Murcia AJ. |
Phylogenetic positions of Aeromonas encheleia, Aeromonas popoffii, Aeromonas DNA hybridization group 11 and Aeromonas group 501. | International Journal of Systematic Bacteriology | 49(Pt4), page(s): 1403-1408 | 10.1099/00207713-49-4-1403 |
| Huys1997a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, water source | Aeromonas popoffii | 1997 |
Huys G, Kämpfer P, Altwegg M, Kersters I, Lamb A, Coopman R, Lüthy-Hottenstein J, Vancanneyt M, Janssen P, Kersters K. |
Aeromonas popoffii sp. nov., a mesophilic bacterium isolated from drinking water production plants and reservoirs. | International Journal of Systematic Bacteriology | 47(4), page(s): 1165-1171 | 10.1099/00207713-47-4-1165 |
| MinanaGalbis2010a | genetics, taxonomy | Aeromonas salmonicida | 2010 |
Miñana-Galbis D, Farfàn M, Lorén JG, Fusté MC. |
The reference strain Aeromonas hydrophicla CIP 57.50 should be reclassified as Aeromonas salmonicida CIP 57.50. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 3), page(s): 715-717 | 10.1099/ijs.0.017939-0 |
| Griffin1953 | summary, general characteristics, acid from carbohydrates, metabolites | Aeromonas salmonicida | 1953 |
Griffin, P.J., Snieszko, S.F. and Friddle, S.B. |
A More Comprehensive Description of Bacterium Salmonicida. | Transactions of the American Fisheries Society | 82, page(s): 129-138 | 10.1577/1548-8659(1952)82[129:AMCDOB]2.0.CO;2 |
| HickmanBrenner1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks, clinical sources | Aeromonas schubertii | 1988 |
Hickman-Brenner FW, Fanning GR, Arduino MJ, Brenner DJ, Farmer JJ 3rd. |
Aeromonas schubertii, a new mannitol-negative species found in human clinical specimens. | Journal of Clinical Microbiology | 26(8), page(s): 1561-1564 | 10.1128/jcm.26.8.1561-1564.1988 |
| Alperi2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Aeromonas taiwanensis, Aeromonas sanarellii | 2010 |
Alperi A, Martínez-Murcia AJ, Ko WC, Monera A, Saavedra MJ, Figueras MJ. |
Aeromonas taiwanensis sp. nov. and Aeromonas sanarellii sp. nov., clinical species from Taiwan. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 9), page(s): 2048-2055 | 10.1099/ijs.0.014621-0 |
| Bora2007 | summary, general characteristics, acid from carbohydrates, fermented foods | Agrococcus casei | 2007 |
Bora N, Vancanneyt M, Gelsomino R, Swings J, Brennan N, Cogan TM, Larpin S, Desmasures N, Lechner FE, Kroppenstedt RM, Ward AC, Goodfellow M. |
Agrococcus casei sp. nov., isolated from the surfaces of smear-ripened cheeses. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 1), page(s): 92-97 | 10.1099/ijs.0.64270-0 |
| Vandamme1992 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Arcobacter butzleri, Arcobacter skirrowii | 1992 |
Vandamme P, Vancanneyt M, Pot B, Mels L, Hoste B, Dewettinck D, Vlaes L, van den Borre C, Higgins R, Hommez J, et al. |
Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. | International Journal of Systematic Bacteriology | 42(3), page(s): 344-356 | 10.1099/00207713-42-3-344 |
| PerezCataluna2019 | summary, general characteristics, genetics, taxonomy | Aliarcobacter skirrowii | 2019 |
Pérez-Cataluña A, Salas-Massó N, Diéguez AL, Balboa S, Lema A, Romalde JL, Figueras MJ. |
Corrigendum (2): Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos. | Frontiers in Microbiology | 10, page(s): 2253 | 10.3389/fmicb.2019.02253 |
| Tian2007 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Alkalibacillus halophilus | 2007 |
Tian XP, Dastager SG, Lee JC, Tang SK, Zhang YQ, Park DJ, Kim CJ, Li WJ. |
Alkalibacillus halophilus sp. nov., a new halophilic species isolated from hypersaline soil in Xin-Jiang province, China. | Systematic and Applied Microbiology | 30(4), page(s): 268-272 | 10.1016/j.syapm.2006.08.003 |
| Yumoto2005 | summary, general characteristics, enzymes, acid from carbohydrates, quirks | Bacillus oshimensis | 2005 |
Yumoto I, Hirota K, Goto T, Nodasaka Y, Nakajima K. |
Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 907-911 | 10.1099/ijs.0.63488-0 |
| Bogan2003 | summary, general characteristics, enzymes, utilisation, quirks | Alkanindiges illinoisensis | 2003 |
Bogan BW, Sullivan WR, Kayser KJ, Derr KD, Aldrich HC, Paterek JR. |
Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1389-1395 | 10.1099/ijs.0.02568-0 |
| Pagnier2014 | summary, general characteristics | Anaerococcus provenciensis | 2014 |
Pagnier I, Croce O, Robert C, Raoult D, La Scola B. |
Non-contiguous finished genome sequence and description of Anaerococcus provenciensis sp. nov. | Standards in Genomic Science | 9(3), page(s): 1198-1210 | 10.4056/sigs.5501035. |
| Woo2005 | summary, general characteristics, enzymes, antibiotics, quirks, blood infection | Anaerospora hongkongensis | 2005 |
Woo PC, Teng JL, Leung KW, Lau SK, Woo GK, Wong AC, Wong MK, Yuen KY. |
Anaerospora hongkongensis gen. nov. sp. nov., a novel genus and species with ribosomal DNA operon heterogeneity isolated from an intravenous drug abuser with pseudobacteremia. | Microbiology and Immunology | 49(1), page(s): 31-39 | 10.1111/j.1348-0421.2005.tb03637.x. |
| Togo2016d | obesity, bariatric surgery | Anaerotruncus massiliensis | 2016 |
Togo AH, Valero R, Delerce J, Raoult D, Million M. |
"Anaerotruncus massiliensis," a new species identified from human stool from an obese patient after bariatric surgery. | New Microbes New Infections | 14, page(s): 56-57 | 10.1016/j.nmni.2016.07.015 |
| Togo2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks, obesity, bariatric surgery | Anaerotruncus massiliensis | 2019 |
Togo AH, Diop A, Dubourg G, Khelaifia S, Richez M, Armstrong N, Maraninchi M, Fournier PE, Raoult D, Million M. |
Anaerotruncus massiliensis sp. nov., a succinate-producing bacterium isolated from human stool from an obese patient after bariatric surgery. | New Microbes New Infections | 29(100508), | 10.1016/j.nmni.2019.01.004 |
| Heinen1982 | summary, general characteristics, enzymes, utilisation | Bacillus flavothermus | 1982 |
Heinen W, Lauwers AM, Mulders JW. |
Bacillus flavothermus, a newly isolated facultative thermophile. | Antonie van Leeuwenhoek | 48(3), page(s): 265-272 | 10.1007/BF00400386 |
| Pikuta2000 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Anoxybacillus pushchinensis, Anoxybacillus flavithermus | 2000 |
Pikuta E, Lysenko A, Chuvilskaya N, Mendrock U, Hippe H, Suzina N, Nikitin D, Osipov G, Laurinavichius K. |
Anoxybacillus pushchinensis gen. nov., sp. nov., a novel anaerobic, alkaliphilic, moderately thermophilic bacterium from manure, and description of Anoxybacillus flavitherms comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 6), page(s): 2109-2117 | 10.1099/00207713-50-6-2109 |
| Kampfer2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aquamicrobium aerolatum, Aquamicrobium lusatiense | 2009 |
Kämpfer P, Martin E, Lodders N, Jäckel U. |
Transfer of Defluvibacter lusatiensis to the genus Aquamicrobium as Aquamicrobium lusatiense comb. nov. and description of Aquamicrobium aerolatum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 10), page(s): 2468-2470 | 10.1099/ijs.0.008730-0 |
| Fritsche1999 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Defluvibacter lusatiae | 1999 |
Fritsche K, Auling G, Andreesen JR, Lechner U. |
Defluvibacter lusatiae gen. nov., sp. nov., a new chlorohenol-degrading member of the alpha-2 subgroup of proteobacteria. | Systematic and Applied Microbiology | 22(2), page(s): 197-204 | 10.1016/s0723-2020(99)80066-6 |
| Koch1995a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks | Arthrobacter agilis | 1995 |
Koch C, Schumann P, Stackebrandt E. |
Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter. | International Journal of Systematic Bacteriology | 45(4), page(s): 837-839 | 10.1099/00207713-45-4-837 |
| Storms2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Arthrobacter gandavensis | 2003 |
Storms V, Devriese LA, Coopman R, Schumann P, Vyncke F, Gillis M. |
Arthrobacter gandavensis sp. nov., for strains of veterinary origin. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 6), page(s): 1881-1884 | 10.1099/ijs.0.02353-0 |
| Lee2003 | summary, general characteristics, enzymes, metabolites, utilisation | Arthrobacter koreensis | 2003 |
Lee JS, Lee KC, Pyun YR, Bae KS. |
Arthrobacter koreensis sp. nov., a novel alkalitolerant bacterium from soil. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1277-1280 | 10.1099/ijs.0.02492-0 |
| Traore2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus andreraoultii | 2015 |
Traore SI, Cimmino T, Lagier JC, Khelaifia S, Brah S, Michelle C, Caputo A, Diallo BA, Fournier PE, Raoult D, Rolain JM. |
Noncontiguous finished genome sequence and description of Bacillus andreraoultii strain SIT1(T) sp. nov. | New Microbes New Infections | 10, page(s): 25-35 | 10.1016/j.nmni.2015.12.005 |
| Yoon2004 | summary, general characteristics, enzymes, acid from carbohydrates, quirks | Bacillus hwajinpoensis, Bacillus baekryungensis | 2004 |
Yoon JH, Kim IG, Kang KH, Oh TK, Park YH. |
Bacillus hwajinpoensis sp. nov. and an unnamed Bacillus genomospecies, novel members of Bacillus rRNA group 6 isolated from sea water of the East Sea and the Yellow Sea in Korea. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 3), page(s): 803-808 | 10.1099/ijs.0.02678-0 |
| Alou2016e | summary | Bacillus mediterraneensis | 2016 |
Alou MT, Fournier PE, Raoult D. |
"Bacillus mediterraneensis," a new bacterial species isolated from human gut microbiota. | New Microbes New Infections | 12, page(s): 87-89 | 10.1016/j.nmni.2016.05.006 |
| Roohi2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bacillus pakistanensis | 2014 |
Roohi A, Ahmed I, Paek J, Sin Y, Abbas S, Jamil M, Chang YH. |
Bacillus pakistanensis sp. nov., a halotolerant bacterium isolated from salt mines of the Karak Area in Pakistan. | Antonie van Leeuwenhoek | 105(6), page(s): 1163-1172 | 10.1007/s10482-014-0177-5 |
| Cimmino2016a | summary, general characteristics, enzymes, acid from carbohydrates | Bacillus testis | 2016 |
Cimmino T, Traore SI, Valentini C, le Page S, Sokhna C, Diallo A, Raoult D, Rolain JM. |
Noncontiguous finished genome sequence and description of Bacillus testis strain SIT10 sp. nov. | New Microbes New Infections | 12, page(s): 18-23 | 10.1016/j.nmni.2016.03.007 |
| Brenner1993a | summary, general characteristics | Bartonella quintana, Bartonella vinsonii, Bartonella henselae, Bartonella elizabethae | 1993 |
Brenner DJ, O'Connor SP, Winkler HH, Steigerwalt AG. |
Proposals to unify the genera Bartonella and Rochalimaea, with descriptions of Bartonella quintana comb. nov., Bartonella vinsonii comb. nov., Bartonella henselae comb. nov., and Bartonella elizabethae comb. nov., and to remove the family Bartonellaceae from the order Rickettsiales. | International Journal of Systematic Bacteriology | 43(4), page(s): 777-786 | 10.1099/00207713-43-4-777 |
| Kordick1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bartonella vinsonii subsp. berkhoffii, Bartonella vinsonii subsp. vinsonii | 1996 |
Kordick DL, Swaminathan B, Greene CE, Wilson KH, Whitney AM, O'Connor S, Hollis DG, Matar GM, Steigerwalt AG, Malcolm GB, Hayes PS, Hadfield TL, Breitschwerdt EB, Brenner DJ. |
Bartonella vinsonii subsp. berkhoffii subsp. nov., isolated from dogs; Bartonella vinsonii subsp. vinsonii; and emended description of Bartonella vinsonii. | International Journal of Systematic Bacteriology | 46(3), page(s): 704-709 | 10.1099/00207713-46-3-704 |
| Weiss1982 | summary, general characteristics, utilisation | Rochalimaea vinsonii | 1982 |
Emilio Weiss and Gregory A. Dasch |
Differential Characteristics of Strains of Rochalimaea: Rochalimaea vinsonii sp. nov., the Canadian Vole Agent | International Journal of Systematic and Evolutionary Microbiology | 32(3), page(s): 305-314 | 10.1099/00207713-32-3-305 |
| Manorama2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Bhargavaea cecembensis | 2009 |
Manorama R, Pindi PK, Reddy GS, Shivaji S. |
Bhargavaea cecembensis gen. nov., sp. nov., isolated from the Chagos-Laccadive ridge system in the Indian Ocean. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 10), page(s): 2618-2623 | 10.1099/ijs.0.002691-0 |
| Scardovi1969a | summary, general characteristics | Bifidobacterium indicum | 1969 |
Scardovi V, Trovatelli LD. |
New species of bifid bacteria from Apis mellifica L. and Apis indica F. A contribution to the taxonomy and biochemistry of the genus Bifidobacterium. | Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene | 123(1), page(s): 64-88 | 4908741 PMID |
| Liu2020 | genetics, taxonomy | Bifidobacterium saeculare, Bifidobacterium gallinarum subsp. saeculare | 2020 |
Liu, Dan Dan and Wang, Hao and Gu, Chun Tao |
Proposal of Bifidobacterium saeculare Biavati et al. 1992 as a later heterotypic synonym of Bifidobacterium gallinarum Watabe et al. 1983 and Bifidobacterium gallinarum subsp. saeculare subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 70(11), page(s): 5964-5968 | 10.1099/ijsem.0.004474 |
| Biavati1991a | summary, general characteristics, acid from carbohydrates | Bifidobacterium saeculare | 1991 |
B. Biavati, P. Mattarelli, F. Crociani |
Bifidobacterium saeculare: a New Species Isolated from Feces of Rabbit | Systematic and Applied Microbiology | 14(4), page(s): 389-392 | 10.1016/S0723-2020(11)80315-2 |
| vanderZee1996 | genetics, taxonomy | Bordetella parapertussis, Bordetella bronchiseptica | 1996 |
van der Zee A, Groenendijk H, Peeters M, Mooi FR. |
The differentiation of Bordetella parapertussis and Bordetella bronchiseptica from humans and animals as determined by DNA polymorphism mediated by two different insertion sequence elements suggests their phylogenetic relationship. | International Journal of Systematic Bacteriology | 46(3), page(s): 640-647 | 10.1099/00207713-46-3-640 |
| Register1997 | genetics, taxonomy | Bordetella bronchiseptica | 1997 |
Register KB, Boisvert A, Ackermann |
MR. Use of ribotyping to distinguish Bordetella bronchiseptica isolates. | International Journal of Systematic Bacteriology | 47(3), page(s): 678-683 | 10.1099/00207713-47-3-678 |
| Khattak1993 | genetics, taxonomy | Bordetella bronchiseptica | 1993 |
Khattak MN, Matthews RC. |
Genetic relatedness of Bordetella species as determined by macrorestriction digests resolved by pulsed-field gel electrophoresis. | International Journal of Systematic Bacteriology | 43(4), page(s): 659-664 | 10.1099/00207713-43-4-659 |
| Vandamme1996a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, wound infections | Bordetella trematum | 1996 |
Vandamme P, Heyndrickx M, Vancanneyt M, Hoste B, De Vos P, Falsen E, Kersters K, Hinz KH. |
Bordetella trematum sp. nov., isolated from wounds and ear infections in humans, and reassessment of Alcaligenes denitrificans Rüger and Tan 1983. | International Journal of Systematic Bacteriology | 46(4), page(s): 849-858 | 10.1099/00207713-46-4-849 |
| Fang2012 | summary, general characteristics, metabolites, utilisation | Brassicibacter mesophilus | 2012 |
Fang MX, Zhang WW, Zhang YZ, Tan HQ, Zhang XQ, Wu M, Zhu XF. |
Brassicibacter mesophilus gen. nov., sp. nov., a strictly anaerobic bacterium isolated from food industry wastewater. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 12), page(s): 3018-3023 | 10.1099/ijs.0.034660-0 |
| Laubach1916 | water source | Brevibacillus laterosporus | 1916 |
Laubach CA. |
Spore-Bearing Bacteria in Water. | Journal of Bacteriology | 1(5), page(s): 505-512 | 16558712 PMID |
| Ivanova2004 | summary, general characteristics, enzymes, antibiotics, utilisation | Brevibacterium celere | 2004 |
Ivanova EP, Christen R, Alexeeva YV, Zhukova NV, Gorshkova NM, Lysenko AM, Mikhailov VV, Nicolau DV. |
Brevibacterium celere sp. nov., isolated from degraded thallus of a brown alga. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2107-2111 | 10.1099/ijs.0.02867-0 |
| Wauters2003a | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, clinical sources | Brevibacterium lutescens | 2003 |
Wauters G, Avesani V, Laffineur K, Charlier J, Janssens M, Van Bosterhaut B, Delmée M. |
Brevibacterium lutescens sp. nov., from human and environmental samples. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1321-1325 | 10.1099/ijs.0.02513-0 |
| Meyer1920 | summary, general characteristics | Brucella melitensis | 1920 |
K. F. Meyer and E. B. Shaw |
A Comparison of the Morphologic, Cultural and Biochemical Characteristics of B. Abortus and B. Melitensis: Studies on the Genus Brucella Nov. Gen. I | The Journal of Infectious Diseases | 27(3), page(s): 173-184 | 10.1093/infdis/27.3.173 |
| Ficht1996 | genetics | Brucella melitensis | 1996 |
Ficht TA, Husseinen HS, Derr J, Bearden SW. |
Species-specific sequences at the omp2 locus of Brucella type strains. | International Journal of Systematic Bacteriology | 46(1), page(s): 329-331 | 10.1099/00207713-46-1-329 |
| Lebuhn2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Ochrobactrum tritici, Ochrobactrum grignonense | 2000 |
Lebuhn M, Achouak W, Schloter M, Berge O, Meier H, Barakat M, Hartmann A, Heulin T. |
Taxonomic characterization of Ochrobactrum sp. isolates from soil samples and wheat roots, and description of Ochrobactrum tritici sp. nov. and Ochrobactrum grignonense sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 6), page(s): 2207-2223 | 10.1099/00207713-50-6-2207 |
| On1998 | summary, general characteristics, enzymes, metabolites, utilisation | Campylobacter sputorum | 1998 |
On SL, Atabay HI, Corry JE, Harrington CS, Vandamme P. |
Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum biovar paraureolyticus, a urease-producing variant from cattle and humans. | International Journal of Systematic Bacteriology | 48(Pt 1), page(s): 195-206 | 10.1099/00207713-48-1-195 |
| Roop1986 | summary, general characteristics, taxonomy | Campylobacter sputorum | 1986 |
Roop, R. Martin and Smibert, R. M. and Johnson, J. L. and Krieg, N. R. |
Designation of the Neotype Strain for Campylobacter sputorum (Prévot) Véron and Chatelain 1973 | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 348 | 10.1099/00207713-36-2-348 |
| Fenollar2006 | bone infections and joint infections, clinical sources | Candidatus Clostridium massiliensis | 2006 |
Fenollar F, Roux V, Stein A, Drancourt M, Raoult D. |
Analysis of 525 samples to determine the usefulness of PCR amplification and sequencing of the 16S rRNA gene for diagnosis of bone and joint infections. | Journal of Clinical Microbiology | 44(3), page(s): 1018-1028 | 10.1128/JCM.44.3.1018-1028.2006 |
| London1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Capnocytophaga gingivalis | 1985 |
Jack London, Roger A. Celesk, Angelika Kagermeier and John Johnson |
Emended Description of Capnocytophaga gingivalis | International Journal of Systematic and Evolutionary Microbiolog | 35(3), page(s): 369-370 | 10.1099/00207713-35-3-369 |
| Holzapfel1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Lactobacillus divergens | 1983 |
Holzapfel WH, Gerber ES. |
Lactobacillus divergens sp. nov., a New Heterofermentative Lactobacillus Species Producing L(+)-Lactate. | Systematic and Applied Microbiology | 4(4), page(s): 522-534 | 10.1016/S0723-2020(83)80010-1 |
| Collins1987b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Lactobacillus divergens, Lactobacillus piscicola, Carnobacterium mobile | 1987 |
Collins, M. D. and Farrow, J. A. E. and Phillips, B. A. and Ferusu, S. and Jones, D. |
Classification of Lactobacillus divergens, Lactobacillus piscicola, and Some Catalase-Negative, Asporogenous, Rod-Shaped Bacteria from Poultry in a New Genus, Carnobacterium | International Journal of Systematic and Evolutionary Microbiology | 37(4), page(s): 310-316 | 10.1099/00207713-37-4-310 |
| Miller1974 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Carnobacterium maltaromaticum | 1974 |
Miller, A. and Morgan, M. E. and Libbey, L. M. |
Lactobacillus maltaromicus, a New Species Producing a Malty Aroma | International Journal of Systematic and Evolutionary Microbiology | 24(3), page(s): 346-354 | 10.1099/00207713-24-3-346 |
| Hiu1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus piscicola | 1984 |
Hiu, S. F. and Holt, R. A. and Sriranganathan, N. and Seidler, R. J. and Fryer, J. L. |
Lactobacillus piscicola, a New Species from Salmonid Fish | International Journal of Systematic and Evolutionary Microbiology | 34(4), page(s): 393-400 | 10.1099/00207713-34-4-393 |
| Diego2003 | summary, general characteristics, acid from carbohydrates, metabolites | Carnobacterium maltaromaticum | 2003 |
Mora, Diego and Scarpellini, Mauro and Franzetti, Laura and Colombo, Silvia and Galli, Antonietta |
Reclassification of Lactobacillus maltaromicus (Miller et al. 1974) DSM 20342T and DSM 20344 and Carnobacterium piscicola (Collins et al. 1987) DSM 20730T and DSM 20722 as Carnobacterium maltaromaticum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 675-678 | 10.1099/ijs.0.02405-0 |
| Shaw1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Carnobacterium maltaromaticum | 1985 |
Shaw, Benjamin G., Harding, Charmaigne D. |
Atypical Lactobacilli from Vacuum-Packaged Meats: Comparison by DNA Hybridization, Cell Composition and Biochemical Tests with a Description of Lactobacillus carnis sp. nov. | Systematic and Applied Microbiology | 6(3), page(s): 291-296 | 10.1016/S0723-2020(85)80034-5 |
| Ndongo2018a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Cellulomonas timonensis | 2018 |
Ndongo S, Bittar F, Beye M, Robert C, Di Pinto F, Fournier PE, Raoult D, Lagier JC. |
'Cellulomonas timonensis' sp. nov., taxonogenomics description of a new bacterial species isolated from human gut. | New Microbes New Infections | 23, page(s): 7-16 | 10.1016/j.nmni.2018.01.003 |
| Nakamura2004a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks | Cerasibacillus quisquiliarum | 2004 |
Nakamura K, Haruta S, Ueno S, Ishii M, Yokota A, Igarashi Y. |
Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 4), page(s): 1063-1069 | 10.1099/ijs.0.02883-0 |
| Lin2020 | summary, general characteristics, enzymes, acid from carbohydrates | Cerasibacillus quisquiliarum, Cerasibacillus terrae | 2020 |
Lin, Shih-Yao and Tsai, Chia-Fang and Hameed, Asif and Young, Chiu-Chung |
Cerasibacillus terrae sp. nov., isolated from maize field, and emended description of Cerasibacillus quisquiliarum Nakamura et al. 2004 | International Journal of Systematic and Evolutionary Microbiology | 70(11), page(s): 5725-5733 | 10.1099/ijsem.0.004470 |
| Everett1999 | taxonomy | Chlamydia trachomatis | 1999 |
Everett KD, Bush RM, Andersen AA. |
Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms. | International Journal of Systematic Bacteriology | 49(Pt 2), page(s): 415-440 | 10.1099/00207713-49-2-415 |
| Kampfer2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Chromobacterium piscinae, Chromobacterium violaceum | 2009 |
Kämpfer P, Busse HJ, Scholz HC. |
Chromobacterium piscinae sp. nov. and Chromobacterium pseudoviolaceum sp. nov., from environmental samples. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 10), page(s): 2486-2490 | 10.1099/ijs.0.008888-0 |
| Kampfer2018 | genetics, taxonomy | Chromobacterium violaceum | 2018 |
Kämpfer P, Glaeser SP, Soby SD. |
Chromobacterium pseudoviolaceum Kämpfer et al. 2009 is a later heterotypic synonym of Chromobacterium violaceum Bergonzini 1880. | International Journal of Systematic and Evolutionary Microbiology | 68(9), page(s): 2967-2968 | 10.1099/ijsem.0.002930 |
| SanchezPorro2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, fermented foods | Chromohalobacter japonicus | 2007 |
Sánchez-Porro C, Tokunaga H, Tokunaga M, Ventosa A. |
Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium isolated from a Japanese salty food. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 10), page(s): 2262-2266 | 10.1099/ijs.0.65212-0 |
| Holmes1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Flavobacterium gleum | 1984 |
Holmes, B. and Owen, R. J. and Steigerwalt, A. G. and Brenner, Don J. |
Flavobacterium gleum, a New Species Found in Human Clinical Specimens | International Journal of Systematic and Evolutionary Microbiology | 34(1), page(s): 21-25 | 10.1099/00207713-34-1-21 |
| MonteroCalasanz2014 | summary, taxonomy, utilisation | Chryseobacterium oleae, Chryseobacterium daecheongense, Chryseobacterium gambrini, Chryseobacterium gleum, Chryseobacterium joostei, Chryseobacterium jejuense, Chryseobacterium luteum, Chryseobacterium shigense, Chryseobacterium taiwanense, Chryseobacterium ureilyticum , Chryseobacterium vrystaatense | 2014 |
Montero-Calasanz Mdel C, Göker M, Rohde M, Spröer C, Schumann P, Busse HJ, Schmid M, Klenk HP, Tindall BJ, Camacho M. |
Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense. | Systematic and Applied Microbiology | 37(5), page(s): 342-350 | 10.1016/j.syapm.2014.04.004 |
| Nguyen2013 | genetics, taxonomy | Chryseobacterium gleum, Chryseobacterium ginsengisoli | 2013 |
Nguyen NL, Kim YJ, Hoang VA, Yang DC. |
Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 8), page(s): 2975-2980 | 10.1099/ijs.0.045427-0 |
| Holmes2013 | clinical sources | Chryseobacterium gleum, Chryseobacterium taklimakanense, Chryseobacterium nakagawai, Chryseobacterium lactis, Chryseobacterium carnis, Chryseobacterium bernardetii, Elizabethkingia miricola | 2013 |
Holmes B, Steigerwalt AG, Nicholson AC. |
DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 12), page(s): 4639-4662 | 10.1099/ijs.0.054353-0 |
| MonteroCalasanz2013 | water source | Chryseobacterium hispalense, Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense, Chryseobacterium gregarium | 2013 |
Montero-Calasanz MDC, Göker M, Rohde M, Spröer C, Schumann P, Busse HJ, Schmid M, Tindall BJ, Klenk HP, Camacho M. |
Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 12), page(s): 4386-4395 | 10.1099/ijs.0.052456-0 |
| Song2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium amylolyticum | 2008 |
Song L, Dong X. |
Clostridium amylolyticum sp. nov., isolated from H2-producing UASB granules. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 9), page(s): 2132-2135 | 10.1099/ijs.0.65635-0 |
| Liou2005 | summary, general characteristics, enzymes, metabolites, utilisation | Clostridium carboxidivorans, Clostridium drakei | 2005 |
Liou JS, Balkwill DL, Drake GR, Tanner RS. |
Clostridium carboxidivorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 2085-2091 | 10.1099/ijs.0.63482-0 |
| Petitdemange1995 | metabolites, utilisation, biotechnology | Clostridium diolis, Clostridium butyricum | 1995 |
E Petitdemange, C Dürr, S Abbad Andaloussi, G Raval |
Fermentation of raw glycerol to 1,3-propanediol by new strains of Clostridium butyricum | Journal of Industrial Microbiology and Biotechnology | 15(6), page(s): 498-502 | 10.1007/BF01570021 |
| Biebl2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium diolis | 2002 |
Biebl H, Spröer C. |
Taxonomy of the glycerol fermenting clostridia and description of Clostridium diolis sp. nov. | Systematic and Applied Microbiology | 25(4), page(s): 491-497 | 10.1078/07232020260517616 |
| Biebl1992 | metabolites | Clostridium diolis | 1992 |
Biebl, H., Marten, S., Hippe, H. et al. |
Glycerol conversion to 1,3-propanediol by newly isolated clostridia. | Applied Microbiology and Biotechnology | 36, page(s): 592-597 | 10.1007/BF00183234 |
| Dione2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium massiliamazoniense | 2020 |
Niokhor Dione, Cheikh Ibrahima Lo, Didier Raoult, Florence Fenollar & Pierre-Edouard Fournier |
Clostridium massiliamazoniense sp. nov., New Bacterial Species Isolated from Stool Sample of a Volunteer Brazilian. | Current Microbiology | 77, page(s): 2008-2015 | 10.1007/s00284-020-02099-9 |
| Ndongo2017b | summary, general characteristics | Clostridium mediterraneense | 2017 |
Ndongo S, Cassir N, Delerce J, Raoult D, La Scola B. |
'Clostridium mediterraneense,' a new bacterial species isolated from the human gut. | New Microbes New Infections | 20, page(s): 25-26 | 10.1016/j.nmni.2017.09.001 |
| Chabou2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, marasmus | Clostridium niameyense | 2018 |
S. Chabou, M. Tidjani Alou, S. Khelaifia, J.-C. Lagier, N. Labas, T. Cimmino, S. Diene, D. Raoult, J.-M. Rolain |
Genome sequence and description of Clostridium niameyense sp. nov., isolated from a human with marasmus in Nigeria | New Microbes New Infections | 24, page(s): 26-31 | 10.1016/j.nmni.2018.03.001 |
| Alam2006 | summary, general characteristics, enzymes, metabolites, utilisation | Clostridium schirmacherense | 2006 |
Alam SI, Dixit A, Reddy GSN, Dube S, Palit M, Shivaji S, Singh L. |
Clostridium schirmacherense sp. nov., an obligately anaerobic, proteolytic, psychrophilic bacterium isolated from lake sediment of Schirmacher Oasis, Antarctica. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 4), page(s): 715-720 | 10.1099/ijs.0.63808-0 |
| HernandezEugenio2002 | summary, general characteristics, metabolites, utilisation | Clostridium thiosulfatireducens | 2002 |
Hernández-Eugenio G, Fardeau ML, Cayol JL, Patel BKC, Thomas P, Macarie H, Garcia JL, Ollivier B. |
Clostridium thiosulfatireducens sp. nov., a proteolytic, thiosulfate- and sulfur-reducing bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 5), page(s): 1461-1468 | 10.1099/00207713-52-5-1461 |
| BenKhedher2021 | summary, general characteristics, acid from carbohydrates | Collinsella ihumii | 2021 |
Mariem Ben Khedher, Fatou Samba Diouf, Cheikh Ibrahima Lo, Stéphane Alibar, Guillaume Durand, Didier Raoult, Pierre-Edouard Fournier & Florence Fenollar |
Collinsella ihumii sp. nov., a new anaerobic bacterium isolated from human stool. | Archives of Microbiology | 203, page(s): 6315-6322 | 10.1007/s00203-021-02562-6 |
| Lee2009 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Corynebacterium doosanense | 2009 |
Lee HJ, Cho SL, Jung MY, Van Nguyen TH, Jung YC, Park HK, Le VP, Kim W. |
Corynebacterium doosanense sp. nov., isolated from activated sludge. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 11), page(s): 2734-2737 | 10.1099/ijs.0.010108-0 |
| Fudou2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Corynebacterium efficiens | 2002 |
Fudou R, Jojima Y, Seto A, Yamada K, Kimura E, Nakamatsu T, Hiraishi A, Yamanaka S. |
Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 4), page(s): 1127-1131 | 10.1099/00207713-52-4-1127 |
| Funke1997b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, vaginosis | Corynebacterium lipophiloflavum | 1997 |
Funke G, Hutson RA, Hilleringmann M, Heizmann WR, Collins MD. |
Corynebacterium lipophiloflavum sp. nov. isolated from a patient with bacterial vaginosis. | FEMS Microbiology Letters | 150(2), page(s): 219-224 | 10.1111/j.1574-6968.1997.tb10373.x |
| Funke1994a | summary, general characteristics, enzymes, health, otitis media | Turicella otitidis | 1994 |
Funke G, Stubbs S, Altwegg M, Carlotti A, Collins MD. |
Turicella otitidis gen. nov., sp. nov., a coryneform bacterium isolated from patients with otitis media. | International Journal of Systematic Bacteriology | 44(2), page(s): 270-273 | 10.1099/00207713-44-2-270 |
| Baek2018 | taxonomy | Turicella otitidis | 2018 |
Baek I, Kim M, Lee I, Na SI, Goodfellow M, Chun J. |
Phylogeny Trumps Chemotaxonomy: A Case Study Involving Turicella otitidis. | Frontiers in Microbiology | 9, page(s): 834 | 10.3389/fmicb.2018.00834 |
| Tong2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Corynebacterium pyruviciproducens | 2010 |
Tong J, Liu C, Summanen PH, Xu H, Finegold SM. |
Corynebacterium pyruviciproducens sp. nov., a pyruvic acid producer. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 5), page(s): 1135-1140 | 10.1099/ijs.0.011783-0 |
| Funke1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, urinary tract infection | Corynebacterium riegelii | 1998 |
Funke G, Lawson PA, Collins MD. |
Corynebacterium riegelii sp. nov., an unusual species isolated from female patients with urinary tract infections. | Journal of Clinical Microbiology | 36(3), page(s): 624-627 | 10.1128/JCM.36.3.624-627.1998 |
| Vela2003 | summary, general characteristics, enzymes | Corynebacterium suicordis | 2003 |
Vela AI, Mateos A, Collins MD, Briones V, Hutson RA, Domínguez L, Fernández-Garayzábal JF. |
Corynebacterium suicordis sp. nov., from pigs. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 6), page(s): 2027-2031 | 10.1099/ijs.0.02645-0 |
| Pitcher1992 | summary, general characteristics, enzymes, metabolites, urinary tract infection | Corynebacterium urealyticum | 1992 |
Pitcher D, Soto A, Soriano F, Valero-Guillén P. |
Classification of coryneform bacteria associated with human urinary tract infection (group D2) as Corynebacterium urealyticum sp. nov. | International Journal of Systematic Bacteriology | 42(1), page(s): 178-181 | 10.1099/00207713-42-1-178 |
| Dione2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, female genital tract | Dakarella massiliensis | 2017 |
Dione N, Rathored J, Tomei E, Lagier JC, Khelaifia S, Robert C, Bretelle F, Raoult D, Fournier PE, Fenollar F. |
Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract. | New Microbes New Infections | 18, page(s): 38-46 | 10.1016/j.nmni.2017.05.003 |
| Nicholson2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, genetics, taxonomy | Elizabethkingia bruuniana, Elizabethkingia ursingii, Elizabethkingia occulta, Elizabethkingia miricola | 2018 |
Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR. |
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov. | Antonie van Leeuwenhoek | 111(1), page(s): 55-72 | 10.1007/s10482-017-0926-3 |
| Li2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Chryseobacterium miricola | 2003 |
Li Y, Kawamura Y, Fujiwara N, Naka T, Liu H, Huang X, Kobayashi K, Ezaki T. |
Chryseobacterium miricola sp. nov., a novel species isolated from condensation water of space station Mir. | Systematic and Applied Microbiology | 26(4), page(s): 523-528 | 10.1078/072320203770865828 |
| Holmes1982 | summary, general characteristics, acid from carbohydrates, metabolites | Flavobacterium breve | 1982 |
Holmes, B. and Owen, R. J. |
Note: Flavobacterium breve sp. nov., nom. rev | International Journal of Systematic and Evolutionary Microbiology | 32(2), page(s): 233-234 | 10.1099/00207713-32-2-233 |
| Naser2005 | summary, general characteristics, enzymes, acid from carbohydrates | Enterococcus canintestini | 2005 |
Naser SM, Vancanneyt M, De Graef E, Devriese LA, Snauwaert C, Lefebvre K, Hoste B, Švec P, Decostere A, Haesebrouck F, Swings J. |
Enterococcus canintestini sp. nov., from faecal samples of healthy dogs. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 2177-2182 | 10.1099/ijs.0.63752-0 |
| DeGraef2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Enterococcus canis, Enterococcus villorum | 2003 |
De Graef EM, Devriese LA, Vancanneyt M, Baele M, Collins MD, Lefebvre K, Swings J, Haesebrouck F. |
Description of Enterococcus canis sp. nov. from dogs and reclassification of Enterococcus porcinus Teixeira et al. 2001 as a junior synonym of Enterococcus villorum Vancanneyt et al 2001. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 1069-1074 | 10.1099/ijs.0.02549-0 |
| Cotta2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterococcus eurekensis, Enterococcus lemanii | 2013 |
Cotta MA, Whitehead TR, Falsen E, Moore E, Lawson PA. |
Erratum to: Two novel species Enterococcus lemanii sp. nov. and Enterococcus eurekensis sp. nov., isolated from a swine-manure storage pit. | Antonie van Leeuwenhoek | 103(6), page(s): 1409-1418 | 10.1007/s10482-013-9908-2 |
| Tyrrell2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Enterococcus gilvus, Enterococcus pallens | 2002 |
Tyrrell GJ, Turnbull L, Teixeira LM, Lefebvre J, Carvalho Mda G, Facklam RR, Lovgren M. |
Enterococcus gilvus sp. nov. and Enterococcus pallens sp. nov. isolated from human clinical specimens. | Journal of Clinical Microbiology | 40(4), page(s): 1140-1145 | 10.1128/JCM.40.4.1140-1145.2002 |
| Koort2004 | summary, general characteristics, enzymes, acid from carbohydrates, food contamination | Enterococcus hermanniensis | 2004 |
Koort J, Coenye T, Vandamme P, Sukura A, Björkroth J. |
Enterococcus hermanniensis sp. nov., from modified-atmosphere-packaged broiler meat and canine tonsils. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 5), page(s): 1823-1827 | 10.1099/ijs.0.63112-0 |
| Vancanneyt2004 | diary foods | Enterococcus saccharominimus | 2004 |
Vancanneyt M, Zamfir M, Devriese LA, Lefebvre K, Engelbeen K, Vandemeulebroecke K, Amar M, De Vuyst L, Haesebrouck F, Swings J. |
Enterococcus saccharominimus sp. nov., from dairy products. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2175-2179 | 10.1099/ijs.0.63193-0 |
| Naser2006 | genetics, taxonomy | Enterococcus casseliflavus, Enterococcus italicus | 2006 |
Naser SM, Vancanneyt M, Hoste B, Snauwaert C, Vandemeulebroecke K, Swings J. |
Reclassification of Enterococcus flavescens Pompei et al. 1992 as a later synonym of Enterococcus casseliflavus (ex Vaughan et al. 1979) Collins et al. 1984 and Enterococcus saccharominimus Vancanneyt et al. 2004 as a later synonym of Enterococcus italicus Fortina et al. 2004. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 2), page(s): 413-416 | 10.1099/ijs.0.63891-0 |
| Fortina2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, fermented foods | Enterococcus italicus | 2004 |
Fortina MG, Ricci G, Mora D, Manachini PL. |
Molecular analysis of artisanal Italian cheeses reveals Enterococcus italicus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 5), page(s): 1717-1721 | 10.1099/ijs.0.63190-0 |
| LePage2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Enterococcus massiliensis | 2016 |
Le Page S, Cimmino T, Togo A, Million M, Michelle C, Khelaifia S, Lagier JC, Raoult D, Rolain JM. |
Noncontiguous finished genome sequence and description of Enterococcus massiliensis sp. nov. | New Microbes New Infections | 12, page(s): 90-95 | 10.1016/j.nmni.2016.04.011 |
| Teixeira2001 | summary, general characteristics, enzymes, acid from carbohydrates | Enterococcus ratti, Enterococcus porcinus, Enterococcus villorum | 2001 |
Teixeira LM, Carvalho MG, Espinola MM, Steigerwalt AG, Douglas MP, Brenner DJ, Facklam RR. |
Enterococcus porcinus sp. nov. and Enterococcus ratti sp. nov., associated with enteric disorders in animals. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 5), page(s): 1737-1743 | 10.1099/00207713-51-5-1737 |
| Vancanneyt2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Enterococcus villorum | 2001 |
Vancanneyt M, Snauwaert C, Cleenwerck I, Baele M, Descheemaeker P, Goossens H, Pot B, Vandamme P, Swings J, Haesebrouck F, Devriese LA. |
Enterococcus villorum sp. nov., an enteroadherent bacterium associated with diarrhoea in piglets. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 2), page(s): 393-400 | 10.1099/00207713-51-2-393 |
| Margaret1986 | summary, general characteristics, metabolites, antibiotics, oral cavity | Eubacterium yurii subsp. yurii, Eubacterium yurii subsp. margaretiae | 1986 |
Margaret, Barbara S. and Krywolap, George N. |
Eubacterium yurii subsp. yurii sp. nov. and Eubacterium yurii subsp. margaretiae subsp. nov.: Test Tube Brush Bacteria from Subgingival Dental Plaque | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 146-149 | 10.1099/00207713-36-2-145 |
| Collins1997 | summary, general characteristics, enzymes, metabolites | Facklamia hominis | 1977 |
Collins MD, Falsen E, Lemozy J, Akervall E, Sjödén B, Lawson PA. |
Phenotypic and phylogenetic characterization of some Globicatella-like organisms from human sources: description of Facklamia hominis gen. nov., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 47(3), page(s): 880-882 | 10.1099/00207713-47-3-880 |
| Taylor1972 | summary, general characteristics, acid from carbohydrates, metabolites | Eubacterium fissicatena | 1972 |
Taylor MM. |
Eubacterium fissicatena sp. nov. isolated from the alimentary tract of the goat. | Journal of General Microbiology | 71(3), page(s): 457-463 | 10.1099/00221287-71-3-457 |
| Falsen2005 | summary, general characteristics, enzymes, metabolites, antibiotics, blood infection | Fastidiosipila sanguinis | 2005 |
Falsen E, Collins MD, Welinder-Olsson C, Song Y, Finegold SM, Lawson PA. |
Fastidiosipila sanguinis gen. nov., sp. nov., a new Gram-positive, coccus-shaped organism from human blood. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 853-858 | 10.1099/ijs.0.63327-0 |
| Traore2016a | summary, general characteristics, enzymes | Flaviflexus massiliensis | 2016 |
Traore SI, Khelaifia S, Fournier PE, Raoult D. |
'Flaviflexus massiliensis', a new bacterial species isolated from the human gut. | New Microbes New Infections | 14, page(s): 8-9 | 10.1016/j.nmni.2016.07.011 |
| McCoy1912 | health, plague | Francisella tularensis | 1912 |
George W. Mccoy, Charles W. Chapin |
Further Observations on a Plague-Like Disease of Rodents with a Preliminary Note on the Causative Agent, Bacterium Tularense | The Journal of Infectious Diseases | 10(1), page(s): 61-72 | 10.1093/infdis/10.1.61 |
| Heyrman2005b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus arenosi, Bacillus arvi, Bacillus humi | 2005 |
Heyrman J, Rodríguez-Díaz M, Devos J, Felske A, Logan NA, De Vos P. |
Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 111-117 | 10.1099/ijs.0.63240-0 |
| Conrads2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Fusobacterium canifelinum | 2004 |
Georg Conrads, Diane M. Citron, Reinier Mutters, Spencer Jang, Ellie J.C. Goldstein |
Fusobacterium canifelinum sp. nov., from the Oral Cavity of Cats and Dogs | Systematic and Applied Microbiology | 27(4), page(s): 407-413 | 10.1078/0723202041438509 |
| Mailhe2016c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Fusobacterium massiliense | 2016 |
Mailhe M, Ricaboni D, Vitton V, Benezech A, Dubourg G, Michelle C, Andrieu C, Armstrong N, Bittar F, Fournier PE, Raoult D, Million M. |
Noncontiguous finished genome sequence and description of Fusobacterium massiliense sp. nov. isolated from human duodenum. | New Microbes New Infections | 16, page(s): 3-12 | 10.1016/j.nmni.2016.12.003 |
| Shinjo1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Fusobacterium necrophorum subsp. necrophorum, Fusobacterium necrophorum subsp. funduliforme | 1991 |
Shinjo T, Fujisawa T, Mitsuoka T. |
Proposal of two subspecies of Fusobacterium necrophorum (Flügge) Moore and Holdeman: Fusobacterium necrophorum subsp. necrophorum subsp. nov., nom. rev. (ex Flügge 1886), and Fusobacterium necrophorum subsp. funduliforme subsp. nov., nom. rev. (ex Hallé 1898). | International Journal of Systematic Bacteriology | 41(3), page(s): 395-397 | 10.1099/00207713-41-3-395 |
| Funke1997d | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, clinical sources | Actinomyces europaeus | 1997 |
Funke G, Alvarez N, Pascual C, Falsen E, Akervall E, Sabbe L, Schouls L, Weiss N, Collins MD. |
Actinomyces europaeus sp. nov., isolated from human clinical specimens. | International Journal of Systematic Bacteriology | 47(3), page(s): 687-692 | 10.1099/00207713-47-3-687 |
| Vandamme2001a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Globicatella sulfidifaciens | 2001 |
Vandamme P, Hommez J, Snauwaert C, Hoste B, Cleenwerck I, Lefebvre K, Vancanneyt M, Swings J, Devriese LA, Haesebrouck F. |
Globicatella sulfidifaciens sp. nov., isolated from purulent infections in domestic animals. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 5), page(s): 1745-1749 | 10.1099/00207713-51-5-1745 |
| Lawson1996 | summary, general characteristics, enzymes, acid from carbohydrates | Bacillus dipsosauri | 1996 |
Lawson PA, Deutch CE, Collins MD. |
Phylogenetic characterization of a novel salt-tolerant Bacillus species: description of Bacillus dipsosauri sp. nov. | Journal of Applied Bacteriology | 81(1), page(s): 109-112 | 10.1111/j.1365-2672.1996.tb03289.x |
| Diop2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Gracilibacillus massiliensis | 2016 |
Diop A, Khelaifia S, Armstrong N, Labas N, Fournier PE, Raoult D, Million M. |
Microbial culturomics unravels the halophilic microbiota repertoire of table salt: description of Gracilibacillus massiliensis sp. nov. | Microbial Ecology in Health and Disease | 27(32049), | 10.3402/mehd.v27.32049 |
| Chamroensaksri2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, fermented foods | Gracilibacillus thailandensis | 2010 |
Chamroensaksri N, Tanasupawat S, Akaracharanya A, Visessanguan W, Kudo T, Itoh T. |
Gracilibacillus thailandensis sp. nov., from fermented fish (pla-ra). | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 4), page(s): 944-948 | 10.1099/ijs.0.011981-0 |
| Liu2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Halobacillus aidingensis, Halobacillus dabanensis | 2005 |
Liu WY, Zeng J, Wang L, Dou YT, Yang SS. |
Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1991-1996 | 10.1099/ijs.0.63787-0 |
| Amoozegar2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Halobacillus karajensis | 2003 |
Amoozegar MA, Malekzadeh F, Malik KA, Schumann P, Spröer C. |
Halobacillus karajensis sp. nov., a novel moderate halophile. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 1059-1063 | 10.1099/ijs.0.02448-0 |
| Yoon2003a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Halobacillus salinus | 2003 |
Yoon JH, Kang KH, Park YH. |
Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 3), page(s): 687-693 | 10.1099/ijs.0.02421-0 |
| Spring1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Halobacillus litoralis, Halobacillus trueperi, Halobacillus halophilus | 1996 |
Spring, S., Ludwig, W., Marquez, M.C., Ventosa, A. and Schleifer, K.-H. |
Halobacillus gen. nov., with Descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and Transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(2), page(s): 492-496 | 10.1099/00207713-46-2-492 |
| Khelaifia2016 | summary, general characteristics, enzymes | Haloferax massiliensis | 2016 |
S, Raoult D. |
Haloferax massiliensis sp. nov., the first human-associated halophilic archaea. | New Microbes New Infections | 12, page(s): 96-98 | 10.1016/j.nmni.2016.05.007 |
| Seck2016a | summary, general characteristics | Halomonas massiliensis | 2016 |
Seck EH, Fournier PE, Raoult D, Khelaifia S. |
'Halomonas massiliensis' sp. nov., a new halotolerant bacterium isolated from the human gut. | New Microbes New Infections | 29, page(s): 19-20 | 10.1016/j.nmni.2016.07.013 |
| Baumgarte2001 | taxonomy | Halomonas salina | 2001 |
Baumgarte S, Moore ER, Tindall BJ. |
Re-examining the 16S rDNA sequence of Halomonas salina. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 1), page(s): 51-53 | 10.1099/00207713-51-1-51 |
| Dobson1996 | summary, genetics | Halomonas salina | 1996 |
Dobson, S.J. and Franzmann, P.D. |
Unification of the Genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the Species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a Single Genus, Halomonas, and Placement of the Genus Zymobacter in the Family Halomonadaceae | International Journal of Systematic and Evolutionary Microbiology | 46(2), page(s): 550-558 | 10.1099/00207713-46-2-550 |
| Valderrama1991 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Deleya salina | 1991 |
Valderrama, M. J. and Quesada, E. and Bejar, V. and Ventosa, A. and Gutierrez, M. C. and Ruiz-Berraquero, F. and Ramos-Cormenzana, A. |
Deleya salina sp. nov., a Moderately Halophilic Gram-Negative Bacterium | International Journal of Systematic and Evolutionary Microbiology | 41(3), page(s): 377-384 | 10.1099/00207713-41-3-377 |
| Fendrich1988 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Pseudomonas halophila | 1988 |
Claudia Fendrich |
Halovibrio variabilis gen. nov. sp. nov., Pseudomonas halophila sp. nov. and a New Halophilic Aerobic Coccoid Eubacterium from Great Salt Lake, Utah, USA. | Systematic and Applied Microbiology | 11(1), page(s): 36-43 | 10.1016/S0723-2020(88)80046-8 |
| Zhang2011a | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Pseudomonas bauzanensis | 2011 |
Zhang DC, Liu HC, Zhou YG, Schinner F, Margesin R. |
Pseudomonas bauzanensis sp. nov., isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 10), page(s): 2333-2337 | 10.1099/ijs.0.026104-0 |
| Renvoise2009 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Helcobacillus massiliensis | 2009 |
Renvoise A, Aldrovandi N, Raoult D, Roux V. |
Helcobacillus massiliensis gen. nov., sp. nov., a novel representative of the family Dermabacteraceae isolated from a patient with a cutaneous discharge. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 9), page(s): 2346-2351 | 10.1099/ijs.0.003319-0 |
| Paster1991 | summary, general characteristics, enzymes, metabolites, antibiotics | Helicobacter felis, Helicobacter mustelae | 1991 |
Paster BJ, Lee A, Fox JG, Dewhirst FE, Tordoff LA, Fraser GJ, O'Rourke JL, Taylor NS, Ferrero R. |
Phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria. | International Journal of Systematic and Evolutionary Microbiology | 41(1), page(s): 31-38 | 10.1099/00207713-41-1-31 |
| McNulty1989 | summary, general characteristics, enzymes | Helicobacter heilmannii | 1989 |
McNulty CA, Dent JC, Curry A, Uff JS, Ford GA, Gear MW, Wilkinson SP. |
New spiral bacterium in gastric mucosa. | Journal of Clinical Pathology | 42(6), page(s): 585-591 | 10.1136/jcp.42.6.585 |
| Smet2012 | summary, general characteristics, enzymes | Helicobacter heilmannii | 2012 |
Smet A, Flahou B, D'Herde K, Vandamme P, Cleenwerck I, Ducatelle R, Pasmans F, Haesebrouck F. |
Helicobacter heilmannii sp. nov., isolated from feline gastric mucosa. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 2), page(s): 299-306 | 10.1099/ijs.0.029207-0 |
| Solnick1993 | genetics, taxonomy, image | Helicobacter heilmannii | 1993 |
Solnick JV, O'Rourke J, Lee A, Paster BJ, Dewhirst FE, Tompkins LS. |
An uncultured gastric spiral organism is a newly identified Helicobacter in humans. | The Journal of Infectious Diseases | 168(2), page(s): 379-385 | 10.1093/infdis/168.2.379 |
| Stolte1994 | health, gastritis | Helicobacter heilmannii | 1994 |
Stolte M, Wellens E, Bethke B, Ritter M, Eidt H. |
Helicobacter heilmannii (formerly Gastrospirillum hominis) gastritis: an infection transmitted by animals? | Scandinavian Journal of Gastroenterology | 29(12), page(s): 1061-1064 | 10.3109/00365529409094888 |
| OwusuDarko2017 | genetics, taxonomy | Bacillus oleronius | 2017 |
Owusu-Darko R, Allam M, Mtshali S, Ismail A, Buys EM. |
Draft genome sequence of Bacillus oleronius DSM 9356 isolated from the termite Reticulitermes santonensis. | Genomics Data | 12, page(s): 76-78 | 10.1016/j.gdata.2017.03.005 |
| Kuhnigk1995 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Bacillus oleronius | 1995 |
Kuhnigk T, Borst EM, Breunig A, König H, Collins MD, Hutson RA, Kämpfer P. |
Bacillus oleronius sp. nov., a member of the hindgut flora of the termite Reticulitermes santonensis (Feytaud). | Canadian Journal of Microbiology | 41(8), page(s): 699-706 | 10.1139/m95-096 |
| Ndongo2016g | summary, general characteristics | Ihubacter massiliensis | 2016 |
Ndongo S, Lagier JC, Fournier PE, Raoult D, Khelaifia S. |
"Ihubacter massiliensis": a new bacterium isolated from the human gut. | New Microbes New Infections | 13, page(s): 104-105 | 10.1016/j.nmni.2016.06.012 |
| Bakalidou2002 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Cellulosimicrobium variabile | 2002 |
Bakalidou A, Kämpfer P, Berchtold M, Kuhnigk T, Wenzel M, König H. |
Cellulosimicrobium variabile sp. nov., a cellulolytic bacterium from the hindgut of the termite Mastotermes darwiniensis. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 4), page(s): 1185-1192 | 10.1099/00207713-52-4-1185 |
| Stackebrandt2004 | summary, general characteristics, genetics, taxonomy | Isoptericola variabilis | 2004 |
Stackebrandt E, Schumann P, Cui XL. |
Reclassification of Cellulosimicrobium variabile Bakalidou et al. 2002 as Isoptericola variabilis gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 3), page(s): 685-688 | 10.1099/ijs.0.02878-0 |
| Shivaji2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Janibacter hoylei, Bacillus isronensis, Bacillus aryabhattai | 2009 |
Shivaji S, Chaturvedi P, Begum Z, Pindi PK, Manorama R, Padmanaban DA, Shouche YS, Pawar S, Vaishampayan P, Dutt CB, Datta GN, Manchanda RK, Rao UR, Bhargava PM, Narlikar JV. |
Janibacter hoylei sp. nov., Bacillus isronensis sp. nov. and Bacillus aryabhattai sp. nov., isolated from cryotubes used for collecting air from the upper atmosphere. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 12), page(s): 2977-2986 | 10.1099/ijs.0.002527-0 |
| Mourembou2015a | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Kallipyga gabonensis | 2015 |
Mourembou G, Rathored J, Lekana-Douki JB, Ndjoyi-Mbiguino A, Fenollar F, Michelle C, Fournier PE, Raoult D, Lagier JC. |
Noncontiguous finished genome sequence and description of Kallipyga gabonensis sp. nov. | New Microbes New Infections | 9, page(s): 15-23 | 10.1016/j.nmni.2015.11.007 |
| Snell1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Kingella denitrificans | 1976 |
Snell, J. J. S. and Lapage, S. P. |
Transfer of Some Saccharolytic Moraxella Species to Kingella Henriksen and Bøvre 1976, with Descriptions of Kingella indologenes sp. nov. and Kingella denitrificans sp. nov | International Journal of Systematic and Evolutionary Microbiology | 26(4), page(s): 451-458 | 10.1099/00207713-26-4-451 |
| Henriksen1976 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Kingella kingae | 1976 |
Henriksen, S. D. and Bovre, K. |
Transfer of Moraxella kingae Henriksen and Bøvre to the Genus Kingella gen. nov. in the Family Neisseriaceae | International Journal of Systematic and Evolutionary Microbiology | 26(4), page(s): 447-450 | 10.1099/00207713-26-4-447 |
| Henriksen1968 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Moraxella kingii | 1968 |
Henriksen SD, Bovre K. |
Moraxella kingii sp.nov., a haemolytic, saccharolytic species of the genus Moraxella. | Journal of General Microbiology | 51(3), page(s): 337-385 | 10.1099/00221287-51-3-377 |
| Reddy2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Kocuria polaris | 2003 |
Reddy GSN, Prakash JSS, Prabahar V, Matsumoto GI, Stackebrandt E, Shivaji S. |
Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 183-187 | 10.1099/ijs.0.02336-0 |
| Inoue2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterobacter cowanii | 2000 |
Inoue K, Sugiyama K, Kosako Y, Sakazaki R, Yamai S. |
Enterobacter cowanii sp. nov., a new species of the family Enterobacteriaceae. | Current Microbiology | 41(6), page(s): 417-420 | 10.1007/s002840010160 |
| Zou2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, fermented foods | Kushneria sinocarnis | 2010 |
Zou Z, Wang G. |
Kushneria sinocarnis sp. nov., a moderately halophilic bacterium isolated from a Chinese traditional cured meat. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 8), page(s): 1881-1886 | 10.1099/ijs.0.013797-0 |
| VanGylswyk1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Clostridium aerotolerans | 1987 |
Van Gylswyk, N. O. and Van Der Toorn, J. J. T. K. |
Clostridium aerotolerans sp. nov., a Xylanolytic Bacterium from Corn Stover and from the Rumina of Sheep Fed Corn Stover | International Journal of Systematic and Evolutionary Microbiology | 37(2), page(s): 102-105 | 10.1099/00207713-37-2-102 |
| Chamkha2001a | summary, general characteristics, metabolites, utilisation | Clostridium aerotolerans, Clostridium celerecrescens, Clostridium xylanolyticum | 2001 |
Chamkha M, Garcia JL, Labat M. |
Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 6), page(s): 2105-2111 | 10.1099/00207713-51-6-2105 |
| Felis2001 | genetics, taxonomy | Lacticaseibacillus zeae | 2001 |
Felis GE, Dellaglio F, Mizzi L, Torriani S. |
Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 6), page(s): 2113-2117 | 10.1099/00207713-51-6-2113 |
| Dicks1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus zeae | 1996 |
Dicks LM, Du Plessis EM, Dellaglio F, Lauer E. |
Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei. | International Journal of Systematic Bacteriology | 46(1), page(s): 337-340 | 10.1099/00207713-46-1-337 |
| Huang2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus zeae | 2020 |
Huang, Chien-Hsun and Chen, Chih-Chieh and Liou, Jong-Shian and Lee, Ai-Yun and Blom, Jochen and Lin, Yu-Chun and Huang, Lina and Watanabe, Koichi |
Genome-based reclassification of Lactobacillus casei: emended classification and description of the species Lactobacillus zeae | International Journal of Systematic and Evolutionary Microbiology | 70(6), page(s): 3755-3762 | 10.1099/ijsem.0.003969 |
| Liu2020a | genetics, taxonomy | Lacticaseibacillus zhaodongensis, Lacticaseibacillus zeae, Lactiplantibacillus argentoratensis, Lentilactobacillus buchneri subsp. silagei | 2020 |
Liu, Dan Dan and Gu, Chun Tao |
Proposal to reclassify Lactobacillus zhaodongensis, Lactobacillus zeae, Lactobacillus argentoratensis and Lactobacillus buchneri subsp. silagei as Lacticaseibacillus zhaodongensis comb. nov., Lacticaseibacillus zeae comb. nov., Lactiplantibacillus argentoratensis comb. nov. and Lentilactobacillus buchneri subsp. silagei comb. nov., respectively and Apilactobacillus kosoi as a later heterotypic synonym of Apilactobacillus micheneri | International Journal of Systematic and Evolutionary Microbiology | 70(12), page(s): 6414-6417 | 10.1099/ijsem.0.004548 |
| Traore2016b | summary, general characteristics | Lagierella massiliensis | 2016 |
Traore SI, Khelaifia S, Dubourg G, Sokhna C, Raoult D, Fournier PE. |
'Lagierella massiliensis', a new bacterium detected in human feces. | New Microbes New Infections | 14, page(s): 53-55 | 10.1016/j.nmni.2016.07.005 |
| Traore2021 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Lagierella massiliensis | 2021 |
Sory Ibrahima Traore, Cheikh Ibrahima Lo, Melhem Bilen, Didier Raoult, Florence Fenollar & Pierre-Edouard Fournier |
Lagierella massiliensis gen. nov., sp. nov., Isolated from a Stool Sample. | Current Microbiology | 78, page(s): 2481-2487 | 10.1007/s00284-021-02539-0 |
| Beye2016 | summary, general characteristics | Lascolabacillus massiliensis | 2016 |
Beye M, Bakour S, Traore SI, Raoult D, Fournier PE. |
'Lascolabacillus massiliensis': a new species isolated from the human gut. | New Microbes New Infections | 11, page(s): 91-92 | 10.1016/j.nmni.2016.03.002 |
| Heyndrickx2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus galactosidilyticus | 2004 |
Heyndrickx M, Logan NA, Lebbe L, Rodríguez-Díaz M, Forsyth G, Goris J, Scheldeman P, De Vos P. |
Bacillus galactosidilyticus sp. nov., an alkali-tolerant beta-galactosidase producer. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 2), page(s): 617-621 | 10.1099/ijs.0.02816-0 |
| Bornside1956 | educational, summary | Lederbergia lentus | 1956 |
G. Bornside, R. E. Kallio |
Urea-hydrolyzing Bacteria I | Journal of Bacteriology | 71, page(s): 627-634 | 10.1128/jb.71.6.627-634.1956 |
| Brenner1980a | health, pneumonia | Legionella bozemanae, Legionella dumoffii | 1980 |
Don J. Brenner, Arnold G. Steigerwalt, G. W. Gorman, Robert E. Weaver, James C. Feeley, L. G. Cordes, Hazel W. Wilkinson, Charlotte Patton, Berenice M. Thomason & Karen R. Lewallen Sasseville |
Legionella bozemanii sp. nov. and Legionella dumoffii sp. nov.: Classification of two additional species of Legionella associated with human pneumonia. | Current Microbiology | 4, page(s): 111-116 | 10.1007/BF02602903 |
| Garrity1980 | summary, enzymes, utilisation | Legionella bozemanae | 1980 |
Garrity, G.M., Brown, A. and Vickers, R. |
Tatlockia and Fluoribacter: Two New Genera of Organisms Resembling Legionella pneumophila | International Journal of Systematic and Evolutionary Microbiology | 30(4), page(s): 609-614 | 10.1099/00207713-30-4-609 |
| Brenner1985 | taxonomy | Legionella bozemanae | 1985 |
Brenner, Don J. and Steigerwalt, Arnold G. and Gorman, George W. and Wilkinson, Hazel W. and Bibb, William F. and Hackel, Meredeth and Tyndall, Richard L. and Campbell, Joyce and Feeley, James C. and Thacker, W. Lanier and Skaliy, Peter and Martin, William T. and Brake, Bonnie J. and Fields, Barry S. and Mceachern, Harold V. and Corcoran, Linda K. |
Ten New Species of Legionella | International Journal of Systematic and Evolutionary Microbiology | 35(1), page(s): 50-59 | 10.1099/00207713-35-1-50 |
| Brenner1979 | summary, general characteristics, enzymes | Legionella pneumophila | 1979 |
Brenner DJ, Steigerwalt AG, McDade JE. |
Classification of the Legionnaires' disease bacterium: Legionella pneumophila, genus novum, species nova, of the family Legionellaceae, familia nova. | Annals of Internal Medicine | 90(4), page(s): 656-658 | 10.7326/0003-4819-90-4-656 |
| Kandler1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus kefir, Lentilactobacillus kefiri | 1983 |
Kandler O, Kunath P. |
Lactobacillus kefir sp. nov., a component of the microflora of Kefir. | Systematic and Applied Microbiology | 4(2), page(s): 286-294 | 10.1016/S0723-2020(83)80057-5 |
| Collins1991a | genetics, taxonomy | Lentilactobacillus kefiri | 1991 |
M.D. Collins, U. Rodrigues, C. Ash, M. Aguirre, J.A.E. Farrow, A. Martinez-Murcia, B.A. Phillips, A.M. Williams, S. Wallbanks |
Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. | FEMS Microbiology Letters | 77(1), page(s): 5-12 | 10.1111/j.1574-6968.1991.tb04313.x |
| Watanabe2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus kisonensis, Lactobacillus otakiensis, Lactobacillus rapi, Lactobacillus sunkii | 2009 |
Watanabe K, Fujimoto J, Tomii Y, Sasamoto M, Makino H, Kudo Y, Okada S. |
Lactobacillus kisonensis sp. nov., Lactobacillus otakiensis sp. nov., Lactobacillus rapi sp. nov. and Lactobacillus sunkii sp. nov., heterofermentative species isolated from sunki, a traditional Japanese pickle. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 4), page(s): 754-760 | 10.1099/ijs.0.004689-0 |
| Wolbach1914 | water source | Leptospira interrogans | 1914 |
Wolbach SB, Binger CA. |
Notes on a filterable Spirochete from fresh Water. Spirocheta biflexa (new Species). | Journal of Medical Research | 30(1), page(s): 23-26 | 19972157 PMID |
| Noguchi1919 | yellow fever | Leptospira interrogans | 1919 |
Noguchi H. |
Etiology of Yellow Fever: II. Transmission Experiments on Yellow Fever. | Journal of Experimental Medicine | 29(6), page(s): 565-584 | 10.1084/jem.29.6.565 |
| Inada1916 | health, Weil's disease | Leptospira interrogans | 1916 |
Inada R, Ido Y, Hoki R, Kaneko R, Ito H. |
The etiology, mode of infection, and specific therapy of Weil's Disease (Spirochaetosis icterohaemorrhagica). | Journal of Experimental Medicine | 23(3), page(s): 377-402 | 10.1084/jem.23.3.377 |
| Feresu1998 | genetics, taxonomy | Leptospira interrogans | 1998 |
Feresu SB, Bolin CA, Korver H. |
A new leptospiral serovar, ngavi, in the Tarassovi serogroup isolated from Zimbabwe oxen. | International Journal of Systematic Bacteriology | 48(Pt 1), page(s): 207-213 | 10.1099/00207713-48-1-207 |
| Faine1982 | summary, general characteristics, enzymes | Leptospira interrogans | 1982 |
Faine, S. and Stallman, N.D. |
Amended Descriptions of the Genus Leptospira Noguchi 1917 and the Species L. interrogans (Stimson 1907) Wenyon 1926 and L. biflexa (Wolbach and Binger 1914) Noguchi 1918 | International Journal of Systematic and Evolutionary Microbiology | 32(4), page(s): 461-463 | 10.1099/00207713-32-4-461 |
| Fonkou2018a | summary, general characteristics, enzymes | Enterococcus timonensis, Actinomyces marseillensis, Leptotrichia massiliensis, Actinomyces pacaensis, Actinomyces oralis, Actinomyces culturomici, Gemella massiliensis | 2018 |
Fonkou MDM, Bilen M, Cadoret F, Fournier PE, Dubourg G, Raoult D. |
'Enterococcus timonensis' sp. nov., 'Actinomyces marseillensis' sp. nov., 'Leptotrichia massiliensis' sp. nov., 'Actinomyces pacaensis' sp. nov., 'Actinomyces oralis' sp. nov., 'Actinomyces culturomici' sp. nov. and 'Gemella massiliensis' sp. nov., new bacterial species isolated from the human respiratory microbiome. | New Microbes New Infections | 22, page(s): 37-43 | 10.1016/j.nmni.2017.12.005 |
| Garvie1983 | genetics, taxonomy | Leuconostoc mesenteroides subsp. cremoris, Leuconostoc mesenteroides subsp. dextranicum | 1983 |
Garvie, Ellen I. |
NOTES: Leuconostoc mesenteroides subsp. cremoris (Knudsen and Sørensen) comb. nov. and Leuconostoc mesenteroides subsp. dextranicum (Beijerinck) comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 33(1), page(s): 118-119 | 10.1099/00207713-33-1-118 |
| Garvie1960 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Leuconostoc mesenteroides subsp. cremoris | 1960 |
Garvie, E. |
The genus Leuconostoc and its nomenclature. | Journal of Dairy Research | 27(2), page(s): 283-292 | 10.1017/S0022029900010359 |
| Tanasupawat2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Lactobacillus acidipiscis, Weissella thailandensis | 2000 |
Tanasupawat S, Shida O, Okada S, Komagata K. |
Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 4), page(s): 1479-1485 | 10.1099/00207713-50-4-1479 |
| Naser2006a | genetics, taxonomy | Lactobacillus acidipiscis, Lactobacillus cypricasei | 2006 |
Naser SM, Vancanneyt M, Hoste B, Snauwaert C, Swings J. |
Lactobacillus cypricasei Lawson et al. 2001 is a later heterotypic synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 7), page(s): 1681-1683 | 10.1099/ijs.0.64229-0 |
| Lawson2001b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Ligilactobacillus acidipiscis | 2001 |
Lawson PA, Papademas P, Wacher C, Falsen E, Robinson R, Collins MD. |
Lactobacillus cypricasei sp. nov., isolated from Halloumi cheese. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 1), page(s): 45-49 | 10.1099/00207713-51-1-45 |
| Muller2000 | summary, general characteristics, acid from carbohydrates, metabolites, fermented foods | Lactobacillus frumenti | 2000 |
Müller MR, Ehrmann MA, Vogel RF. |
Lactobacillus frumenti sp. nov., a new lactic acid bacterium isolated from rye-bran fermentations with a long fermentation period. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 6), page(s): 2127-2133 | 10.1099/00207713-50-6-2127 |
| Niamsup2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Limosilactobacillus ingluviei | 2003 |
Niamsup P, Sujaya IN, Tanaka M, Sone T, Hanada S, Kamagata Y, Lumyong S, Assavanig A, Asano K, Tomita F, Yokota A. |
Lactobacillus thermotolerans sp. nov., a novel thermotolerant species isolated from chicken faeces. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 263-268 | 10.1099/ijs.0.02347-0 |
| Felis2006 | genetics, taxonomy | Lactobacillus ingluviei | 2006 |
Felis GE, Vancanneyt M, Snauwaert C, Swings J, Torriani S, Castioni A, Dellaglio F. |
Reclassification of Lactobacillus thermotolerans Niamsup et al. 2003 as a later synonym of Lactobacillus ingluviei Baele et al. 2003. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 4), page(s): 793-795 | 10.1099/ijs.0.63992-0 |
| Baele2003 | summary, general characteristics, acid from carbohydrates | Lactobacillus ingluviei | 2003 |
Baele M, Vancanneyt M, Devriese LA, Lefebvre K, Swings J, Haesebrouck F. |
Lactobacillus ingluviei sp. nov., isolated from the intestinal tract of pigeons. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 133-136 | 10.1099/ijs.0.02206-0 |
| Carr1970 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus mali | 1970 |
Carr JG, Davies PA. |
Homofermentative Lactobacilli of ciders including Lactobacillus mali nov. spec. | Journal of Applied Bacteriology | 33(4), page(s): 768-774 | 10.1111/j.1365-2672.1970.tb02261.x |
| Kaneuchi1988 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Lactobacillus mali | 1988 |
Kaneuchi, Choji and Seki, Masako and Komagata, Kazuo |
Taxonomic Study of Lactobacillus mali Carr and Davis 1970 and Related Strains: Validation of Lactobacillus mali Carr and Davis 1970 over Lactobacillus yamanashiensis Nonomura 1983 | International Journal of Systematic and Evolutionary Microbiology | 38(3), page(s): 269-272 | 10.1099/00207713-38-3-269 |
| Nonomura1983 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Liquorilactobacillus mali | 1983 |
Nonomura, H. |
Lactobacillus yamanashiensis subsp. yamanashiensis and Lactobacillus yamanashiensis subsp. mali sp. and subsp. nov., nom. rev. | International Journal of Systematic and Evolutionary Microbiology | 33(2), page(s): 406-407 | 10.1099/00207713-33-2-406 |
| Endo2005 | summary, general characteristics, acid from carbohydrates, metabolites, fermented foods | Lactobacillus satsumensis | 2005 |
A, Okada S. |
Lactobacillus satsumensis sp. nov., isolated from mashes of shochu, a traditional Japanese distilled spirit made from fermented rice and other starchy materials. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 83-85 | 10.1099/ijs.0.63248-0 |
| Pringsheim1947 | summary, general characteristics, utilisation | Lysinibacillus macroides | 1947 |
Pringsheim EG, Robinow CF. |
Observations on two very large bacteria, Caryophanon latum Peshkoff and Lineola longa (nomen provisorium). | Journal of General Microbiology | 1(3), page(s): 267-278 | 10.1099/00221287-1-3-267 |
| Pringsheim1950 | summary, general characteristics, utilisation, educational | Lysinibacillus macroides | 1950 |
Pringsheim EG. |
The bacterial genus Lineola. | Journal of General Microbiology | 4(2), page(s): 198-209 | 10.1099/00221287-4-2-198 |
| Coorevits2012 | summary, general characteristics, enzymes, metabolites, utilisation | Lysinibacillus macroides | 2012 |
Coorevits A, Dinsdale AE, Heyrman J, Schumann P, Van Landschoot A, Logan NA, De Vos P. |
Lysinibacillus macroides sp. nov., nom. rev. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 5), page(s): 1121-1127 | 10.1099/ijs.0.027995-0 |
| Seiler2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Lysinibacillus meyeri | 2013 |
Seiler H, Scherer S, Wenning M. |
Lysinibacillus meyeri sp. nov., isolated from a medical practice. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 4), page(s): 1512-1518 | 10.1099/ijs.0.039420-0 |
| Zhu2015 | genetics | Lysinibacillus varians | 2015 |
Zhu C, Sun G, Zhao G, Zheng H, Xu M. |
Complete genome sequence of Lysinibacillus varians GY32, a bacterium with filament-to-rod cell cycle. | FEMS Microbiology Letters | 362(1), page(s): 1-3 | 10.1093/femsle/fnu010 |
| Zhu2014 | summary, general characteristics, enzymes, metabolites, utilisation | Lysinibacillus varians | 2014 |
Zhu C, Sun G, Chen X, Guo J, Xu M. |
Lysinibacillus varians sp. nov., an endospore-forming bacterium with a filament-to-rod cell cycle. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 11), page(s): 3644-3649 | 10.1099/ijs.0.068320-0 |
| Liu2015 | genetics, taxonomy | Lysinibacillus xylanilyticus | 2015 |
Liu GH, Liu B, Wang JP, Che JM, Zheng XF, Chen QQ, Ge CB. |
Draft Genome Sequence of Type Strain Lysinibacillus xylanilyticus DSM 23493T. | Genome Announcements | 3(5), page(s): e01037-15 | 10.1128/genomeA.01037-15 |
| Lee2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Lysinibacillus xylanilyticus, Lysinibacillus boronitolerans | 2010 |
Lee CS, Jung YT, Park S, Oh TK, Yoon JH. |
Lysinibacillus xylanilyticus sp. nov., a xylan-degrading bacterium isolated from forest humus. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 2), page(s): 281-286 | 10.1099/ijs.0.013367-0 |
| Jabari2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Macellibacteroides fermentans | 2012 |
Jabari L, Gannoun H, Cayol JL, Hedi A, Sakamoto M, Falsen E, Ohkuma M, Hamdi M, Fauque G, Ollivier B, Fardeau ML. |
Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 10), page(s): 2522-2527 | 10.1099/ijs.0.032508-0 |
| Schleifer1983 | summary, general characteristics, enzymes, acid from carbohydrates | Staphylococcus lentus | 1983 |
Schleifer KH, Geyer U, Kilpper-Bälz R, Devriese LA. |
Elevation of Staphylococcus sciuri subsp. lentus (Kloos et al.) to Species Status: Staphylococcus lentus (Kloos et al.) comb. nov. | Systematic and Applied Microbiology | 4(3), page(s): 382-387 | 10.1016/S0723-2020(83)80022-8 |
| Ricaboni2016e | summary, general characteristics | Marseilla massiliensis | 2016 |
Ricaboni D, Mailhe M, Vitton V, Fournier PE, Khelaifia S, Raoult D. |
'Marseilla massiliensis' gen. nov., sp. nov., isolated from human right colon. | New Microbes New Infections | 13, page(s): 45-47 | 10.1016/j.nmni.2016.06.005 |
| Lindquist2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Massilia timonae | 2003 |
Lindquist D, Murrill D, Burran WP, Winans G, Janda JM, Probert W. |
Characteristics of Massilia timonae and Massilia timonae-like isolates from human patients, with an emended description of the species. | Journal of Clinical Microbiology | 41(1), page(s): 192-196 | 10.1128/JCM.41.1.192-196.2003 |
| LaScola1998 | summary, general characteristics, enzymes, utilisation, antibiotics, blood infection, cerebellar lesions | Massilia timonae | 1998 |
La Scola B, Birtles RJ, Mallet MN, Raoult D. |
Massilia timonae gen. nov., sp. nov., isolated from blood of an immunocompromised patient with cerebellar lesions. | Journal of Clinical Microbiology | 36(10), page(s): 2847-2852 | 10.1128/JCM.36.10.2847-2852.1998 |
| Mailhe2016d | summary, genetics | Mediterranea massiliensis | 2016 |
Mailhe M, Ricaboni D, Benezech A, Khelaifia S, Fournier PE, Raoult D. |
'Mediterranea massiliensis' gen. nov., sp. nov., a new human-associated bacterium isolated from the right and left colon lavage of a 58-year-old patient. | New Microbes New Infections | 13, page(s): 54-55 | 10.1016/j.nmni.2016.06.002 |
| Ngom2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Mediterranea massiliensis | 2017 |
Ngom II, Mailhe M, Ricaboni D, Vitton V, Benezech A, Khelaifia S, Michelle C, Cadoret F, Armstrong N, Levasseur A, Raoult D, Million M. |
Noncontiguous finished genome sequence and description of Mediterranea massiliensis gen. nov., sp. nov., a new member of the Bacteroidaceae family isolated from human colon. | New Microbes New Infections | 21, page(s): 105-116 | 10.1016/j.nmni.2017.11.009 |
| Marchandin2003 | summary, metabolites, antibiotics, clinical sources | Megasphaera micronuciformis | 2003 |
Marchandin H, Jumas-Bilak E, Gay B, Teyssier C, Jean-Pierre H, Siméon de Buochberg M, Carrière C, Carlier JP. |
Phylogenetic analysis of some Sporomusa sub-branch members isolated from human clinical specimens: description of Megasphaera micronuciformis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 2), page(s): 547-553 | 10.1099/ijs.0.02378-0 |
| Yoon2001a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Bacillus jeotgali | 2001 |
Yoon JH, Kang SS, Lee KC, Kho YH, Choi SH, Kang KH, Park YH. |
Bacillus jeotgali sp. nov., isolated from jeotgal, Korean traditional fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 1087-1092 | 10.1099/00207713-51-3-1087 |
| Kanso2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Bacillus subterraneus | 2002 |
Kanso S, Greene AC, Patel BKC. |
Bacillus subterraneus sp. nov., an iron- and manganese-reducing bacterium from a deep subsurface Australian thermal aquifer. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 3), page(s): 869-874 | 10.1099/00207713-52-3-869 |
| Yoon2005b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus litoralis | 2005 |
Yoon JH, Oh TK. |
Bacillus litoralis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1945-1948 | 10.1099/ijs.0.63332-0 |
| Kangale2021 | genetics, taxonomy | Metabacillus niabensis | 2021 |
Kangale LJ, Levasseur A, Raoult D, Ghigo E, Fournier PE. |
Draft genome of Metabacillus niabensis strain 4T19T isolated from cotton-waste composts for mushroom cultivation. | New Microbes New Infections | 42(100894), | 10.1016/j.nmni.2021.100894 |
| Kwon2007a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus niabensis | 2007 |
Kwon, Soon-Wo and Lee, Seon-Young and Kim, Byung-Yong and Weon, Hang-Yeon and Kim, Jung-Bong and Go, Seung-Joo and Lee, Gil-Bok |
Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation | International Journal of Systematic and Evolutionary Microbiology | 57(8), page(s): 1909-1913 | 10.1099/ijs.0.64178-0 |
| Ricaboni2016f | summary, general characteristics | Metaprevotella massiliensis | 2016 |
Ricaboni D, Mailhe M, Cadoret F, Benezech A, Fournier PE, Raoult D. |
'Metaprevotella massiliensis' gen. nov., sp. nov., isolated from human ileum. | New Microbes New Infections | 17, page(s): 33-35 | 10.1016/j.nmni.2016.11.015 |
| Zeikus1975 | summary, general characteristics, metabolites, utilisation | Methanobacterium arbophilicum | 1975 |
Zeikus JG, Henning DL. |
Methanobacterium arbophilicum sp.nov. An obligate anaerobe isolated from wetwood of living trees. | Antonie Van Leeuwenhoek | 41(4), page(s): 543-552 | 10.1007/BF02565096 |
| Asakawa1993 | summary, general characteristics, image | Methanobrevibacter arboriphilus | 1993 |
Asakawa, Susumu; Morii, Hiroyuki; Akagawa-Matsushita, Masayo; Koga, Yosuke and Hayano, Koichi |
Characterization of Methanobrevibacter arboriphilicus SA Isolated from a Paddy Field Soil and DNA-DNA Hybridization among M. arboriphilicus strains. | International Journal of Systematic and Evolutionary Microbiology | 43(4), page(s): 683-686 | 10.1099/00207713-43-4-683 |
| Rea2007 | summary, general characteristics, metabolites, utilisation | Methanobrevibacter millerae, Methanobrevibacter olleyae | 2007 |
Rea S, Bowman JP, Popovski S, Pimm C, Wright AG. |
Methanobrevibacter millerae sp. nov. and Methanobrevibacter olleyae sp. nov., methanogens from the ovine and bovine rumen that can utilize formate for growth. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 3), page(s): 450-456 | 10.1099/ijs.0.63984-0 |
| Ferrari1994 | summary, general characteristics, metabolites, utilisation | Methanobrevibacter oralis | 1994 |
Ferrari, A., Brusa, T., Rutili, A., Enrica Canzi & Bruno Biavati |
Isolation and characterization of Methanobrevibacter oralis sp. nov. | Current Microbiology | 29, page(s): 7-12 | 10.1007/BF01570184 |
| Poehlein2016 | genetics | Methanobrevibacter oralis, Methanobrevibacter filiformis, Methanobrevibacter curvatus, Methanobrevibacter cuticularis | 2016 |
Poehlein A, Seedorf H. |
Draft Genome Sequences of Methanobrevibacter curvatus DSM11111, Methanobrevibacter cuticularis DSM11139, Methanobrevibacter filiformis DSM11501, and Methanobrevibacter oralis DSM7256. | Genome Announcements | 4(3), page(s): e00617-16 | 10.1128/genomeA.00617-16 |
| Smith1958 | summary, general characteristics, metabolites, utilisation | Methanobacterium ruminantium | 1958 |
Smith P.H., Hungate R.E. |
Isolation and characterization of Methanobacterium ruminantium n. sp. | Journal of Bacteriology | 75(6), page(s): 713-718 | 10.1128/jb.75.6.713-718.1958 |
| Matsuyama1999 | food waste | Microbacterium kitamiense | 1999 |
Matsuyama H, Kawasaki K, Yumoto I, Shida O. |
Microbacterium kitamiense sp. nov., a new polysaccharide-producing bacterium isolated from the wastewater of a sugar-beet factory. | International Journal of Systematic Bacteriology | 49(4), page(s): 1353-1357 | 10.1099/00207713-49-4-1353 |
| Liu2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Microbacterium natoriense | 2005 |
Liu J, Nakayama T, Hemmi H, Asano Y, Tsuruoka N, Shimomura K, Nishijima M, Nishino T. |
Microbacterium natoriense sp. nov., a novel D-aminoacylase-producing bacterium isolated from soil in Natori, Japan. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 661-665 | 10.1099/ijs.0.63265-0 |
| Schumann1999a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium oxydans | 1999 |
Schumann P, Rainey FA, Burghardt J, Stackebrandt E, Weiss N. |
Reclassification of Brevibacterium oxydans (Chatelain and Second 1966) as Microbacterium oxydans comb. nov. | International Journal of Systematic Bacteriology | 49(Pt 1), page(s): 175-177 | 10.1099/00207713-49-1-175 |
| Ohta2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food waste | Microbacterium saccharophilum | 2013 |
Ohta Y, Ito T, Mori K, Nishi S, Shimane Y, Mikuni K, Hatada Y. |
Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 8), page(s): 2765-2769 | 10.1099/ijs.0.047258-0 |
| Mathlouthi2017 | summary, general characteristics, enzymes, antibiotics, utilisation, kwashiorkor | Mobilicoccus massiliensis | 2017 |
N. Mathlouthi, S.I. Traore, T. Cimmino, S. Khelaifia, T.T. Nguyen, F. Cadoret, C. Couderc, D. Raoult, J.-M. Rolain |
Genome sequence and description of Mobilicoccus massiliensis sp. nov. isolated from the stool of a Nigerian boy with kwashiorkor | New Microbes New Infections | 20, page(s): 18-24 | 10.1016/j.nmni.2017.08.007 |
| UlgerToprak2010a | summary, general characteristics, enzymes, metabolites, antibiotics, clinical sources, wound infections | Murdochiella asaccharolytica | 2010 |
Ulger-Toprak N, Liu C, Summanen PH, Finegold SM. |
Murdochiella asaccharolytica gen. nov., sp. nov., a Gram-stain-positive, anaerobic coccus isolated from human wound specimens. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 5), page(s): 1013-1016 | 10.1099/ijs.0.015909-0 |
| Murcia2006 | summary, general characteristics, enzymes | Mycobacterium colombiense | 2006 |
Murcia MI, Tortoli E, Menendez MC, Palenque E, Garcia MJ. |
Mycobacterium colombiense sp. nov., a novel member of the Mycobacterium avium complex and description of MAC-X as a new ITS genetic variant. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 9), page(s): 2049-2054 | 10.1099/ijs.0.64190-0 |
| Springer1993 | summary, general characteristics, enzymes, health, lymphadenitis | Mycobacterium interjectum | 1993 |
Springer B, Kirschner P, Rost-Meyer G, Schröder KH, Kroppenstedt RM, Böttger EC. |
Mycobacterium interjectum, a new species isolated from a patient with chronic lymphadenitis. | Journal of Clinical Microbiology | 31(12), page(s): 3083-3089 | 10.1128/jcm.31.12.3083-3089.1993 |
| Levasseur2016 | genetics, taxonomy | Mycobacterium interjectum | 2016 |
Levasseur A, Asmar S, Robert C, Drancourt M. |
Draft Genome Sequence of Mycobacterium interjectum Strain ATCC 51457T. | Genome Announcements | 4(3), page(s): e00452-16 | 10.1128/genomeA.00452-16 |
| Springer1996 | summary, general characteristics, enzymes | Mycobacterium lentiflavum | 1996 |
Springer B, Wu WK, Bodmer T, Haase G, Pfyffer GE, Kroppenstedt RM, Schröder KH, Emler S, Kilburn JO, Kirschner P, Telenti A, Coyle MB, Böttger EC. |
Isolation and characterization of a unique group of slowly growing mycobacteria: description of Mycobacterium lentiflavum sp. nov. | Journal of Clinical Microbiology | 34(5), page(s): 1100-1107 | 10.1128/jcm.34.5.1100-1107.1996 |
| Meissner1975 | summary, general characteristics, enzymes, taxonomy | Mycobacterium simiae | 1975 |
Meissner G, Schröder KH. |
Relationship between Mycobacterium simiae and Mycobacterium habana. | American Review of Respiratory Disease | 111(2), page(s): 196-200 | 10.1164/arrd.1975.111.2.196 |
| Baess1982 | taxonomy | Mycobacterium simiae | 1982 |
Baess I, Magnusson M. |
Classification of Mycobacterium simiae by means of comparative reciprocal intradermal sensitin testing on guinea-pigs and deoxyribonucleic acid hybridization. | Acta Pathologica, Microbiologica, et immunologica Scandinavica B, Microbiology | 90(2), page(s): 101-107 | 10.1111/j.1699-0463.1982.tb00089.x |
| Riojas2018 | genetics, taxonomy | Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti, Mycobacterium pinnipedii, Mycobacterium tuberculosis | 2018 |
Riojas MA, McGough KJ, Rider-Riojas CJ, Rastogi N, Hazbón MH. |
Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis. | International Journal of Systematic and Evolutionary Microbiology | 68(1), page(s): 324-332 | 10.1099/ijsem.0.002507 |
| Vancanneyt1996 | summary, general characteristics, metabolites, utilisation, genetics, taxonomy | Myroides odoratus, Myroides odoratimimus | 1996 |
Vancanneyt, M. And Segers, P. And Torck, U. And Hoste, B. And Bernardet, J.-F. And Vandamme, P. And Kersters, K. |
Reclassification of Flavobacterium odoratum (Stutzer 1929) Strains to a New Genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(4), page(s): 926-932 | 10.1099/00207713-46-4-926 |
| Heyrman2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus novalis, Bacillus vireti, Bacillus soli, Bacillus bataviensis, Bacillus drentensis | 2004 |
Heyrman J, Vanparys B, Logan NA, Balcaen A, Rodríguez-Díaz M, Felske A, De Vos P. |
Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 1), page(s): 47-57 | 10.1099/ijs.0.02723-0 |
| Ten2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus pocheonensis | 2007 |
Ten LN, Baek SH, Im WT, Larina LL, Lee JS, Oh HM, Lee ST. |
Bacillus pocheonensis sp. nov., a moderately halotolerant, aerobic bacterium isolated from soil of a ginseng field. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 11), page(s): 2532-2537 | 10.1099/ijs.0.64491-0 |
| Traore2016c | summary, general characteristics, enzymes, malnutrition | Nigerium massiliense | 2016 |
Sory Ibrahima Traore, Souleymane Brah, Jeremy Delerce, Pierre Edouard Fournier, Didier Raoult, Sophie Edouard |
'Nigerium massiliense' gen. nov., sp. nov., a new bacterium isolated from the gut from a patient with acute malnutrition | Human Microbiome Journal | 1, page(s): 12-13 | 10.1016/j.humic.2016.08.001 |
| Takami1999 | educational | Oceanobacillus iheyensis | 1999 |
Takami H, Kobata K, Nagahama T, Kobayashi H, Inoue A, Horikoshi K. |
Biodiversity in deep-sea sites located near the south part of Japan. | Extremophiles | 3(2), page(s): 97-102 | 10.1007/s007920050104 |
| Lu2001 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Oceanobacillus iheyensis | 2001 |
Lu J, Nogi Y, Takami H. |
Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. | FEMS Microbiology Letters | 205(2), page(s): 291-297 | 10.1111/j.1574-6968.2001.tb10963.x |
| Khelaifia2016a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Oceanobacillus jeddahense | 2016 |
Khelaifia S, Lagier JC, Bibi F, Azhar EI, Croce O, Padmanabhan R, Jiman-Fatani AA, Yasir M, Robert C, Andrieu C, Fournier PE, Raoult D. |
Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov. | OMICS | 20(4), page(s): 248-258 | 10.1089/omi.2016.0004 |
| Wang2010a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks | Oceanobacillus manasiensis | 2010 |
Wang L, Liu WY, Gu ZJ, Chen SF, Yang SS. |
Oceanobacillus manasiensis sp. nov., a moderately halophilic bacterium isolated from the salt lakes of Xinjiang, China. | Journal of Microbiology | 48(3), page(s): 312-317 | 10.1007/s12275-010-0135-5 |
| Romano2006 | summary, general characteristics | Oceanobacillus oncorhynchi | 2006 |
Romano I, Lama L, Nicolaus B, Poli A, Gambacorta A, Giordano A. |
Oceanobacillus oncorhynchi subsp. incaldanensis subsp. nov., an alkalitolerant halophile isolated from an algal mat collected from a sulfurous spring in Campania (Italy), and emended description of Oceanobacillus oncorhynchi. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 4), page(s): 805-810 | 10.1099/ijs.0.63575-0 |
| Yumoto2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks, food source (trout) | Oceanobacillus oncorhynchi | 2005 |
Yumoto I, Hirota K, Nodasaka Y, Nakajima K. |
Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 4), page(s): 1521-1524 | 10.1099/ijs.0.63483-0 |
| Lee2006a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Oceanobacillus picturae, Virgibacillus koreensis | 2006 |
Lee JS, Lim JM, Lee KC, Lee JC, Park YH, Kim CJ. |
Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 1), page(s): 251-257 | 10.1099/ijs.0.63734-0 |
| Tominaga2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, fermented foods | Oceanobacillus sojae | 2009 |
Tominaga T, An SY, Oyaizu H, Yokota A. |
Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan. | Journal of General and Applied Microbiology | 55(3), page(s): 225-232 | 10.2323/jgam.55.225 |
| Stackebrandt2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Oerskovia enterophila, Oerskovia jenensis, Oerskovia paurometabol, Oerskovia turbata | 2002 |
Stackebrandt E, Breymann S, Steiner U, Prauser H, Weiss N, Schumann P. |
Re-evaluation of the status of the genus Oerskovia, reclassification of Promicromonospora enterophila (Jáger et al. 1983) as Oerskovia enterophila comb. nov. and description of Oerskovia jenensis sp. nov. and Oerskovia paurometabola sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 4), page(s): 1105-1111 | 10.1099/00207713-52-4-1105 |
| Prauser1970 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Oerskovia turbata | 1970 |
Prauser H, Lechevalier MP, Lechevalier H. |
Description of Oerskovia gen. n. to harbor Orskov's motile nocardia. | Applied Microbiology | 19(3), page(s): 534 | 10.1128/am.19.3.534-534.1970 |
| Rossau1987 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Oligella urethralis, Oligella ureolytica | 1987 |
Rossau, R. and Kersters, K. and Falsen, E. and Jantzen, E. and Segers, P. and Union, A. and Nehls, L. and De Ley, J. |
Oligella, a New Genus Including Oligella urethralis comb. nov. (Formerly Moraxella urethralis) and Oligella ureolytica sp. nov. (Formerly CDC Group IVe): Relationship to Taylorella equigenitalis and Related Taxa | International Journal of Systematic and Evolutionary Microbiology | 37(3), page(s): 198-210 | 10.1099/00207713-37-3-198 |
| Ricaboni2017a | summary, general characteristics | Olsenella phocaeensis, Olsenella provencensis, Olsenella mediterranea | 2017 |
Davide Ricaboni, Morgane Mailhe, Veronique Vitton, Fadi Bittar, Didier Raoult, Pierre-Edouard Fournier |
Olsenella provencensis sp. nov., Olsenella phocaeensis sp. nov., and Olsenella mediterranea sp. nov. isolated from the human colon. | Human Microbiome Journal | 4, page(s): 22-23 | 10.1016/j.humic.2017.05.002 |
| kampfer2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Ornithinibacillus contaminans | 2010 |
Kämpfer P, Falsen E, Lodders N, Langer S, Busse HJ, Schumann P. |
Ornithinibacillus contaminans sp. nov., an endospore-forming species. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 12), page(s): 2930-2934 | 10.1099/ijs.0.021337-0 |
| Ndongo2016h | summary, general characteristics | Pacaella massiliensis | 2016 |
Ndongo S, Dubourg G, Fournier PE, Raoult D. |
Pacaella massiliensis gen. nov., sp. nov., a new bacterial species isolated from the human gut. | New Microbes New Infections | 16, page(s): 32-33 | 10.1016/j.nmni.2016.12.007 |
| Collins1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Arthrobacter ilicis | 1981 |
M. Collins, Dorothy Jones, R. Kroppenstedt |
Reclassification of Corynebacterium ilicis (Mandel, Guba and Litsky) in the genus Arthrobacter, as Arthrobacter ilicis comb. nov. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene: I | 2, page(s): 318-323 | 10.1016/S0721-9571(81)80024-5 |
| Nakamura1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacillus amylolyticus, Bacillus lautus, Bacillus pabuli, Bacillus validus | 1984 |
Nakamura, L. K. |
Bacillus amylolyticus sp. nov., nom. rev., Bacillus lautus sp. nov., nom. rev., Bacillus pabuli sp. nov., nom. rev., and Bacillus validus sp. nov., nom. rev. | International Journal of Systematic and Evolutionary Microbiology | 34(2), page(s): 224-226 | 10.1099/00207713-34-2-224 |
| Lee2007a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Paenibacillus ginsengisoli | 2007 |
Lee M, Ten LN, Baek SH, Im WT, Aslam Z, Lee ST. |
Paenibacillus ginsengisoli sp. nov., a novel bacterium isolated from soil of a ginseng field in Pocheon Province, South Korea. | Antonie Van Leeuwenhoek | 91(2), page(s): 127-135 | 10.1007/s10482-006-9102-x |
| Kim2011d | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Paenibacillus anaericanus | 2011 |
Kim KK, Lee KC, Lee JS. |
Reclassification of Paenibacillus ginsengisoli as a later heterotypic synonym of Paenibacillus anaericanus. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 9), page(s): 2101-2106 | 10.1099/ijs.0.025650-0 |
| Horn2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus anaericanus, Paenibacillus terrae, Flavobacterium denitrificans, Dechloromonas denitrificans | 2005 |
Horn MA, Ihssen J, Matthies C, Schramm A, Acker G, Drake HL. |
Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 3), page(s): 1255-1265 | 10.1099/ijs.0.63484-0 |
| Meehan2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus azoreducens | 2001 |
Meehan C, Bjourson AJ, McMullan G. |
Paenibacillus azoreducens sp. nov., a synthetic azo dye decolorizing bacterium from industrial wastewater. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 5), page(s): 1681-1685 | 10.1099/00207713-51-5-1681 |
| Elo2000 | summary, general characteristics | Paenibacillus borealis | 2000 |
Elo S, Maunuksela L, Salkinoja-Salonen M, Smolander A, Haahtela K. |
Humus bacteria of Norway spruce stands: plant growth promoting properties and birch, red fescue and alder colonizing capacity. | FEMS Microbiology Ecology | 21(2), page(s): 143-152 | 10.1111/j.1574-6941.2000.tb00679.x |
| Elo2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus borealis | 2001 |
Elo S, Suominen I, Kämpfer P, Juhanoja J, Salkinoja-Salonen M, Haahtela K. |
Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 2), page(s): 535-545 | 10.1099/00207713-51-2-535 |
| Logan2004 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Paenibacillus cookii, Paenibacillus cineris | 2004 |
Logan NA, De Clerck E, Lebbe L, Verhelst A, Goris J, Forsyth G, Rodríguez-Díaz M, Heyndrickx M, De Vos P. |
Paenibacillus cineris sp. nov. and Paenibacillus cookii sp. nov., from Antarctic volcanic soils and a gelatin-processing plant. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 4), page(s): 1071-1076 | 10.1099/ijs.0.02967-0 |
| Tcherpakov1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus dendritiformis | 1999 |
Tcherpakov M, Ben-Jacob E, Gutnick DL. |
Paenibacillus dendritiformis sp. nov., proposal for a new pattern-forming species and its localization within a phylogenetic cluster. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 1), page(s): 239-246 | 10.1099/00207713-49-1-239 |
| Velazquez2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Paenibacillus favisporus | 2004 |
Velázquez E, de Miguel T, Poza M, Rivas R, Rosselló-Mora R, Villa TG. |
Paenibacillus favisporus sp. nov., a xylanolytic bacterium isolated from cow faeces. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 1), page(s): 59-64 | 10.1099/ijs.0.02709-0 |
| Aguilera2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food waste | Paenibacillus jamilae | 2001 |
Aguilera M, Monteoliva-Sánchez M, Suárez A, Guerra V, Lizama C, Bennasar A, Ramos-Cormenzana A. |
Paenibacillus jamilae sp. nov., an exopolysaccharide-producing bacterium able to grow in olive-mill wastewater. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 5), page(s): 1687-1692 | 10.1099/00207713-51-5-1687 |
| Heyndrickx1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Paenibacillus larvae | 1996 |
Heyndrickx M, Vandemeulebroecke K, Hoste B, Janssen P, Kersters K, De Vos P, Logan NA, Ali N, Berkeley RC. |
Reclassification of Paenibacillus (formerly Bacillus) pulvifaciens (Nakamura 1984) Ash et al. 1994, a later subjective synonym of Paenibacillus (formerly Bacillus) larvae (White 1906) Ash et al. 1994, as a subspecies of P. larvae, with emended descriptions of P. larvae as P. larvae subsp. larvae and P. larvae subsp. pulvifaciens. | International Journal of Systematic and Evolutionary Microbiology | 46(1), page(s): 270-279 | 10.1099/00207713-46-1-270 |
| Genersch2006 | summary, general characteristics, enzymes, genetics, taxonomy | Paenibacillus larvae | 2006 |
Genersch E, Forsgren E, Pentikäinen J, Ashiralieva A, Rauch S, Kilwinski J, Fries I. |
Reclassification of Paenibacillus larvae subsp. pulvifaciens and Paenibacillus larvae subsp. larvae as Paenibacillus larvae without subspecies differentiation. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 3), page(s): 501-511 | 10.1099/ijs.0.63928-0 |
| Zhou2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus macerans | 2012 |
Zhou Y, Gao S, Wei DQ, Yang LL, Huang X, He J, Zhang YJ, Tang SK, Li WJ. |
Paenibacillus thermophilus sp. nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China. | Antonie Van Leeuwenhoek | 102(4), page(s): 601-609 | 10.1007/s10482-012-9755-6 |
| Kobayashi2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Paenibacillus macerans | 2019 |
Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M. |
Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994. | International Journal of Systematic and Evolutionary Microbiology | 69(2), page(s): 417-421 | 10.1099/ijsem.0.003160 |
| Daane2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus naphthalenovorans | 2002 |
Daane LL, Harjono I, Barns SM, Launen LA, Palleron NJ, Häggblom MM. |
PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene-degrading bacterium from the rhizosphere of salt marsh plants. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 1), page(s): 131-139 | 10.1099/00207713-52-1-131 |
| Alou2016f | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Paenibacillus phocaensis | 2016 |
Tidjani Alou M, Rathored J, Nguyen TT, Andrieu C, Couderc C, Brah S, Diallo BA, Fournier PE, Raoult D, Dubourg G. |
Paenibacillus phocaensis sp. nov., isolated from the gut microbiota of a healthy infant. | New Microbes New Infections | 16, page(s): 13-24 | 10.1016/j.nmni.2016.12.001 |
| Suominen2003 | summary, general characteristics, enzymes, metabolites, utilisation | Paenibacillus stellifer | 2003 |
Suominen I, Spröer C, Kämpfer P, Rainey FA, Lounatmaa K, Salkinoja-Salonen M. |
Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1369-1374 | 10.1099/ijs.0.02277-0 |
| Kong2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Paenibacillus typhae | 2013 |
Kong BH, Liu QF, Liu M, Liu Y, Liu L, Li CL, Yu R, Li YH. |
Paenibacillus typhae sp. nov., isolated from roots of Typha angustifolia L. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 3), page(s): 1037-1044 | 10.1099/ijs.0.042747-0 |
| Rivas2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus xylanilyticus | 2005 |
Rivas R, Mateos PF, Martínez-Molina E, Velázquez E. |
Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 405-408 | 10.1099/ijs.0.63173-0 |
| Chen2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paraliobacillus quinghaiensis | 2009 |
Chen YG, Cui XL, Zhang YQ, Li WJ, Wang YX, Xu LH, Wen ML, Peng Q, Jiang CL. |
Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 1), page(s): 28-33 | 10.1099/ijs.0.65735-0 |
| Mutters1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pasteurella dagmatis, Pasteurella canis, Pasteurella stomatis, Pasteurella anatis, Pasteurella langaa | 1985 |
Mutters, R. and Ihm, P. and Pohl, S. and Frederiksen, W. and Mannheim, W. |
Reclassification of the Genus Pasteurella Trevisan 1887 on the Basis of Deoxyribonucleic Acid Homology, with Proposals for the New Species Pasteurella dagmatis, Pasteurella canis, Pasteurella stomatis, Pasteurella anatis, and Pasteurella langaa | International Journal of Systematic and Evolutionary Microbiology | 35(3), page(s): 309-322 | 10.1099/00207713-35-3-309 |
| Christensen2004 | summary, general characteristics | Pasteurella multocida | 2004 |
Christensen H, Angen Ø, Olsen JE, Bisgaard M. |
Revised description and classification of atypical isolates of Pasteurella multocida from bovine lungs based on genotypic characterization to include variants previously classified as biovar 2 of Pasteurella canis and Pasteurella avium. | Microbiology | 150(Pt 6), page(s): 1757-1765 | 10.1099/mic.0.26720-0 |
| Koort2004a | summary, general characteristics, acid from carbohydrates, metabolites, quirks, food spoilage | Lactobacillus oligofermentans | 2005 |
Koort J, Murros A, Coenye T, Eerola S, Vandamme P, Sukura A, Björkroth J. |
Lactobacillus oligofermentans sp. nov., associated with spoilage of modified-atmosphere-packaged poultry products. | Applied and Environmental Microbiology | 71(8), page(s): 4400-4406 | 10.1128/AEM.71.8.4400-4406.2005 |
| Leisner2002 | fermented foods | Lactobacillus vaccinostercus | 2002 |
Leisner JJ, Vancanneyt M, Lefebvre K, Vandemeulebroecke K, Hoste B, Vilalta NE, Rusul G, Swings J. |
Lactobacillus durianis sp. nov., isolated from an acid-fermented condiment (tempoyak) in Malaysia. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 3), page(s): 927-931 | 10.1099/00207713-52-3-927 |
| Dellaglio2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus vaccinostercus | 2006 |
Dellaglio F, Vancanneyt M, Endo A, Vandamme P, Felis GE, Castioni A, Fujimoto J, Watanabe K, Okada S. |
Lactobacillus durianis Leisner et al. 2002 is a later heterotypic synonym of Lactobacillus vaccinostercus Kozaki and Okada 1983. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 8), page(s): 1721-1724 | 10.1099/ijs.0.64316-0 |
| Okada1979 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus vaccinostercus | 1979 |
S. Okada, Yoichi Suzuki, M. Kozaki |
A new heterofermentative Lactobacillus species with meso-diaminopimelic acid in peptidoglycan, Lactobacillus vaccinostercus Kozaki and Okada sp. nov. | Journal of General and Applied Microbiology | 25, page(s): 215-221 | 10.2323/JGAM.25.215 |
| Nunes2006 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Paucisalibacillus globulus | 2006 |
Nunes I, Tiago I, Pires AL, da Costa MS, Veríssimo A. |
Paucisalibacillus globulus gen. nov., sp. nov., a Gram-positive bacterium isolated from potting soil. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 8), page(s): 1841-1845 | 10.1099/ijs.0.64261-0 |
| Diop2019 | vaginosis | Peptoniphilus pacaensis, Peptoniphilus raoultii, Peptoniphilus vaginalis | 2019 |
Diop K, Diop A, Michelle C, Richez M, Rathored J, Bretelle F, Fournier PE, Fenollar F. |
Description of three new Peptoniphilus species cultured in the vaginal fluid of a woman diagnosed with bacterial vaginosis: Peptoniphilus pacaensis sp. nov., Peptoniphilus raoultii sp. nov., and Peptoniphilus vaginalis sp. nov. | Microbiologyopen | 8(3), page(s): e00661 | 10.1002/mbo3.661 |
| Diop2016a | female genital tract | Peptoniphilus pacaensis | 2016 |
Diop K, Bretelle F, Mediannikov O, Fournier PE, Fenollar F. |
'Peptoniphilus pacaensis' sp. nov., a new species isolated from human female genital tract. | New Microbes New Infections | 13, page(s): 37-39 | 10.1016/j.nmni.2016.06.007 |
| Grabowski2005 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Petrimonas sulfuriphila | 2005 |
Grabowski A, Tindall BJ, Bardin V, Blanchet D, Jeanthon C. |
Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 3), page(s): 1113-1111 | 10.1099/ijs.0.63426-0 |
| Seck2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Planococcus massiliensis | 2015 |
Seck EH, Sankar SA, Khelaifia S, Croce O, Robert C, Couderc C, Di Pinto F, Sokhna C, Fournier PE, Raoult D, Lagier JC. |
Noncontiguous finished genome sequence and description of Planococcus massiliensis sp. nov., a moderately halophilic bacterium isolated from the human gut. | New Microbes New Infections | 10, page(s): 36-46 | 10.1016/j.nmni.2015.12.006 |
| Hedberg2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, health, coeliac disease | Prevotella jejuni | 2013 |
Hedberg ME, Israelsson A, Moore ERB, Svensson-Stadler L, Wai SN, Pietz G, Sandström O, Hernell O, Hammarström ML, Hammarström S. |
Prevotella jejuni sp. nov., isolated from the small intestine of a child with coeliac disease. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 11), page(s): 4218-4223 | 10.1099/ijs.0.052647-0 |
| Downes2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Propionibacterium acidifaciens | 2009 |
Downes J, Wade WG. |
Propionibacterium acidifaciens sp. nov., isolated from the human mouth. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 11), page(s): 2778-2781 | 10.1099/ijs.0.010470-0 |
| Munson2004 | oral cavity | Propionibacterium acidifaciens | 2004 |
Munson MA, Banerjee A, Watson TF, Wade WG. |
Molecular analysis of the microflora associated with dental caries. | Journal of Clinical Microbiology | 42(7), page(s): 3023-3029 | 10.1128/JCM.42.7.3023-3029.2004 |
| Stackebrandt2002a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Propionimicrobium lymphophilum | 2002 |
Stackebrandt E, Schumann P, Schaal KP, Weiss N. |
Propionimicrobium gen. nov., a new genus to accommodate Propionibacterium lymphophilum (Torrey 1916) Johnson and Cummins 1972, 1057AL as Propionimicrobium lymphophilum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 6), page(s): 1925-1927 | 10.1099/00207713-52-6-1925 |
| Eberson1918 | health, Hodgkin's Disease | Propionimicrobium lymphophilum | 1918 |
Frederick Eberson, A |
Bacteriologic Study of the Diphtheroid Organisms with Special Reference to Hodgkin's Disease. | The Journal of Infectious Diseases | 23(1), page(s): 1-42 | 10.1086/infdis/23.1.1 |
| Torrey1916 | summary, general characteristics | Propionimicrobium lymphophilum | 1916 |
Torrey JC. |
Bacteria associated with certain types of abnormal Lymph Glands. | Journal of Medical Research | 34(1), page(s): 65-80.1 | 19972289 PMID |
| Johnson1972 | taxonomy | Propionimicrobium lymphophilum | 1972 |
Johnson JL, Cummins CS. |
Cell wall composition and deoxyribonucleic acid similarities among the anaerobic coryneforms, classical propionibacteria, and strains of Arachnia propionica. | Journal of Bacteriology | 109(3), page(s): 1047-1066 | 10.1128/jb.109.3.1047-1066.1972 |
| Kampfer2006a | summary, general characteristics, enzymes, utilisation | Pseudochrobactrum asaccharolyticum, Pseudochrobactrum saccharolyticum | 2006 |
Kämpfer P, Rosselló-Mora R, Scholz HC, Welinder-Olsson C, Falsen E, Busse HJ. |
Description of Pseudochrobactrum gen. nov., with the two species Pseudochrobactrum asaccharolyticum sp. nov. and Pseudochrobactrum saccharolyticum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 8), page(s): 1823-1829 | 10.1099/ijs.0.64256-0 |
| Lin2004 | summary, general characteristics, enzymes | Zimmermannella alba, Pseudoclavibacter helvolus, Gulosibacter bifidus | 2004 |
Lin YC, Uemori K, de Briel DA, Arunpairojana V, Yokota A. |
Zimmermannella helvola gen. nov., sp. nov., Zimmermannella alba sp. nov., Zimmermannella bifida sp. nov., Zimmermannella faecalis sp. nov. and Leucobacter albus sp. nov., novel members of the family Microbacteriaceae. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 4), page(s): 1669-1676 | 10.1099/ijs.0.02741-0 |
| Funke1998a | clinical sources | Arthrobacter cumminsii | 1998 |
Funke G, Pagano-Niederer M, Sjödén B, Falsen E. |
Characteristics of Arthrobacter cumminsii, the most frequently encountered Arthrobacter species in human clinical specimens. | Journal of Clinical Microbiology | 36(6), page(s): 1539-1543 | 10.1128/JCM.36.6.1539-1543.1998 |
| Monias1928 | summary, general characteristics, taxonomy, image | Pseudomonas alcaligenes | 1928 |
Bruno Leo Monias |
Classification of Bacterium Alcaligenes, Pyocyaneum and Fluorescens. | The Journal of Infectious Diseases | 43(4), page(s): 330-334 | 10.1093/infdis/43.4.330 |
| Peix2007 | summary, general characteristics, enzymes, metabolites, utilisation, genetics, taxonomy | Pseudomonas chlororaphis | 2007 |
Peix A, Valverde A, Rivas R, Igual JM, Ramírez-Bahena MH, Mateos PF, Santa-Regina I, Rodríguez-Barrueco C, Martínez-Molina E, Velázquez E. |
Reclassification of Pseudomonas aurantiaca as a synonym of Pseudomonas chlororaphis and proposal of three subspecies, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. aurantiaca subsp. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 6), page(s): 1286-1290 | 10.1099/ijs.0.64621-0 |
| Verhille1999 | summary, general characteristics, enzymes, metabolites, utilisation, water source | Pseudomonas gessardii, Pseudomonas migulae | 1999 |
Verhille S, Baïda N, Dabboussi F, Hamze M, Izard D, Leclerc H. |
Pseudomonas gessardii sp. nov. and Pseudomonas migulae sp. nov., two new species isolated from natural mineral waters. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 4), page(s): 1559-1572 | 10.1099/00207713-49-4-1559 |
| vandenBeld2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudomonas gessardii, Pseudomonas brenneri, Pseudomonas proteolytica | 2016 |
van den Beld MJC, Reinders E, Notermans DW, Reubsaet FAG. |
Possible misidentification of species in the Pseudomonas fluorescens lineage as Burkholderia pseudomallei and Francisella tularensis, and emended descriptions of Pseudomonas brenneri, Pseudomonas gessardii and Pseudomonas proteolytica. | International Journal of Systematic and Evolutionary Microbiology | 66(9), page(s): 3420-3425 | 10.1099/ijsem.0.001206 |
| Pungrasmi2008 | summary, general characteristics, enzymes, metabolites, utilisation | Pseudomonas japonica | 2008 |
Pungrasmi W, Lee HS, Yokota A, Ohta A. |
Pseudomonas japonica sp. nov., a novel species that assimilates straight chain alkylphenols. | Journal of General and Applied Microbiology | 54(1), page(s): 61-69 | 10.2323/jgam.54.61 |
| Dabboussi1999 | summary, general characteristics, enzymes, metabolites, utilisation, water source | Pseudomonas libanensis | 1999 |
Dabboussi F, Hamze M, Elomari M, Verhille S, Baida N, Izard D, Leclerc H. |
Pseudomonas libanensis sp. nov., a new species isolated from Lebanese spring waters. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 3), page(s): 1091-1101 | 10.1099/00207713-49-3-1091 |
| Bardet2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pseudomonas massiliensis | 2018 |
Bardet L, Cimmino T, Buffet C, Michelle C, Rathored J, Tandina F, Lagier JC, Khelaifia S, Abrahão J, Raoult D, Rolain JM. |
Microbial Culturomics Application for Global Health: Noncontiguous Finished Genome Sequence and Description of Pseudomonas massiliensis Strain CB-1T sp. nov. in Brazil. | OMICS | 22(2), page(s): 164-175 | 10.1089/omi.2017.0027 |
| Dabboussi2002 | clinical sources | Pseudomonas mosselii | 2002 |
Dabboussi F, Hamze M, Singer E, Geoffroy V, Meyer JM, Izard D. |
Pseudomonas mosselii sp. nov., a novel species isolated from clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 2), page(s): 363-376 | 10.1099/00207713-52-2-363 |
| Coroler1996 | summary, general characteristics, enzymes, metabolites, utilisation, water source | Pseudomonas rhodesiae | 1996 |
Loïc Coroler, Malika Elomari, Bart Hoste, Monique Gillis, Daniel Izard, Henri Leclerc |
Pseudomonas rhodesiae sp. nov., a New Species Isolated from Natural Mineral Waters | Systematic and Applied Microbiology | 19(4), page(s): 600-607 | 10.1016/S0723-2020(96)80032-4 |
| Romanenko2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pseudomonas xanthomarina | 2005 |
Romanenko LA, Uchino M, Falsen E, Lysenko AM, Zhukova NV, Mikhailov VV. |
Pseudomonas xanthomarina sp. nov., a novel bacterium isolated from marine ascidian. | Journal of General and Applied Microbiology | 51(2), page(s): 65-71 | 10.2323/jgam.51.65 |
| Bowman1996 | summary, general characteristics, enzymes, metabolites, utilisation | Psychrobacter phenylpyruvicus | 1996 |
Bowman JP, Cavanagh J, Austin JJ, Sanderson K. |
Novel Psychrobacter species from Antarctic ornithogenic soils. | International Journal of Systematic and Evolutionary Microbiology | 46(4), page(s): 841-848 | 10.1099/00207713-46-4-841 |
| Vela2003a | summary, general characteristics, enzymes, metabolites | Psychrobacter pulmonis | 2003 |
Vela AI, Collins MD, Latre MV, Mateos A, Moreno MA, Hutson R, Domínguez L, Fernández-Garayzábal JF. |
Psychrobacter pulmonis sp. nov., isolated from the lungs of lambs. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 2), page(s): 415-419 | 10.1099/ijs.0.02413-0 |
| Kosowski2014 | summary, general characteristics, enzymes, metabolites, utilisation | Bacillus andreesenii, Bacillus pervagus | 2014 |
Kosowski K, Schmidt M, Pukall R, Hause G, Kämpfer P, Lechner U. |
Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 1), page(s): 88-94 | 10.1099/ijs.0.054833-0 |
| Dong2011 | summary, general characteristics, enzymes, acid from carbohydrates | Bacillus kyonggiensis | 2011 |
Dong K, Lee S. |
Bacillus kyonggiensis sp. nov., isolated from soil of a lettuce field. | Journal of Microbiology | 49(5), page(s): 776-781 | 10.1007/s12275-011-1218-7 |
| Rihs1993 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, blood infection | Roseomonas gilardii | 1993 |
Rihs JD, Brenner DJ, Weaver RE, Steigerwalt AG, Hollis DG, Yu VL. |
Roseomonas, a new genus associated with bacteremia and other human infections. | Journal of Clinical Microbiology | 31(12), page(s): 3275-3283 | 10.1128/jcm.31.12.3275-3283.1993 |
| SanchezPorro2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Roseomonas ludipueritiae, Roseomonas rosea, Roseomonas gilardii | 2009 |
Sánchez-Porro C, Gallego V, Busse HJ, Kämpfer P, Ventosa A. |
Transfer of Teichococcus ludipueritiae and Muricoccus roseus to the genus Roseomonas, as Roseomonas ludipueritiae comb. nov. and Roseomonas rosea comb. nov., respectively, and emended description of the genus Roseomonas. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 5), page(s): 1193-1198 | 10.1099/ijs.0.004820-0 |
| Noguchi2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, fermented foods | Bacillus vietnamensis | 2004 |
Noguchi H, Uchino M, Shida O, Takano K, Nakamura LK, Komagata K. |
Bacillus vietnamensis sp. nov., a moderately halotolerant, aerobic, endospore-forming bacterium isolated from Vietnamese fish sauce. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2117-2120 | 10.1099/ijs.0.02895-0 |
| Chou2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Rothia terrae | 2008 |
Chou YJ, Chou JH, Lin KY, Lin MC, Wei YH, Arun AB, Young CC, Chen WM. |
Rothia terrae sp. nov. isolated from soil in Taiwan. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 1), page(s): 84-88 | 10.1099/ijs.0.65172-0 |
| Alou2016g | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, malnutrition | Rubeoparvulum massiliense | 2016 |
Tidjani Alou M, Rathored J, Lagier JC, Khelaifia S, Michelle C, Sokhna C, Diallo A, Diallo AB, Fournier PE, Raoult D, Edouard S. |
Rubeoparvulum massiliense gen. nov., sp. nov., a new bacterial genus isolated from the human gut of a Senegalese infant with severe acute malnutrition. | New Microbes New Infections | 15, page(s): 49-60 | 10.1016/j.nmni.2016.11.003 |
| Vaishampayan2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rummeliibacillus stabekisii, Rummeliibacillus pycnus | 2009 |
Vaishampayan P, Miyashita M, Ohnishi A, Satomi M, Rooney A, La Duc MT, Venkateswaran K. |
Description of Rummeliibacillus stabekisii gen. nov., sp. nov. and reclassification of Bacillus pycnus Nakamura et al. 2002 as Rummeliibacillus pycnus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 5), page(s): 1094-1099 | 10.1099/ijs.0.006098-0 |
| Nakamura2002 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Bacillus pycnus | 2002 |
Nakamura LK, Shida O, Takagi H, Komagata K. |
Bacillus pycnus sp. nov. and Bacillus neidei sp. nov., round-spored bacteria from soil. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 2), page(s): 501-505 | 10.1099/00207713-52-2-501 |
| Choi2014a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks, fermented foods | Salimicrobium jeotgali | 2014 |
Choi EJ, Jin HM, Kim KH, Jeon CO. |
Salimicrobium jeotgali sp. nov., isolated from salted, fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 11), page(s): 3624-3630 | 10.1099/ijs.0.062042-0 |
| Zhang2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Salinisphaera halophila | 2012 |
Zhang YJ, Tang SK, Shi R, Klenk HP, Chen C, Yang LL, Zhou Y, Li WJ. |
Salinisphaera halophila sp. nov., a moderately halophilic bacterium isolated from brine of a salt well. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 9), page(s): 2174-2179 | 10.1099/ijs.0.035584-0 |
| Mellado1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Salinivibrio costicola | 1996 |
Mellado E, Moore ER, Nieto JJ, Ventosa A. |
Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 46(3), page(s): 817-821 | 10.1099/00207713-46-3-817 |
| Huang2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Salinivibrio costicola | 2000 |
Huang CY, Garcia JL, Patel BK, Cayol JL, Baresi L, Mah RA. |
Salinivibrio costicola subsp. vallismortis subsp. nov., a halotolerant facultative anaerobe from Death Valley, and emended description of Salinivibrio costicola. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 2), page(s): 615-622 | 10.1099/00207713-50-2-615 |
| Back1999 | summary, general characteristics, acid from carbohydrates, metabolites, food spoilage | Lactobacillus perolens | 1999 |
Back W, Bohak I, Ehrmann M, Ludwig W, Pot B, Kersters K, Schleifer KH. |
Lactobacillus perolens sp. nov., a soft drink spoilage bacterium. | Systematic and Applied Microbiology | 22(3), page(s): 354-359 | 10.1016/S0723-2020(99)80042-3 |
| Bhadra2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Serratia ureilytica | 2005 |
Bhadra B, Roy P, Chakraborty R. |
Serratia ureilytica sp. nov., a novel urea-utilizing species. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 2155-2158 | 10.1099/ijs.0.63674-0 |
| Huang2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Shewanella xiamenensis | 2010 |
Huang J, Sun B, Zhang X. |
Shewanella xiamenensis sp. nov., isolated from coastal sea sediment. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 7), page(s): 1585-1589 | 10.1099/ijs.0.013300-0 |
| Rheims1999 | summary, general characteristics, enzymes, metabolites, utilisation | Bacillus silvestris | 1999 |
Rheims H, Frühling A, Schumann P, Rohde M, Stackebrandt E. |
Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 2), page(s): 795-802 | 10.1099/00207713-49-2-795 |
| Krishnamurthi2009a | summary, general characteristics | Solibacillus silvestris | 2009 |
Krishnamurthi S, Chakrabarti T, Stackebrandt E. |
Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to Solibacillus gen. nov. as Solibacillus silvestris comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 5), page(s): 1054-1058 | 10.1099/ijs.0.65742-0 |
| Busse2003 | summary, general characteristics, enzymes, metabolites, utilisation | Sphingomonas aurantiaca, Sphingomonas aerolata, Sphingomonas faeni | 2003 |
Busse HJ, Denner EBM, Buczolits S, Salkinoja-Salonen M, Bennasar A, Kämpfer P. |
Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1253-1260 | 10.1099/ijs.0.02461-0 |
| Andersch1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus laevolacticus | 1994 |
Andersch, I., Pianka, S., Fritze, D. and Claus, D. |
Description of Bacillus laevolacticus (ex Nakayama and Yanoshi 1967) sp. nov., nom. rev. | International Journal of Systematic and Evolutionary Microbiology | 44(Pt 4), page(s): 659-664 | 10.1099/00207713-44-4-659 |
| Nakayama1967 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacillus laevolacticus, Bacillus racemilacticus | 1967 |
Ooki Nakayama, Masayoshi Yanoshi |
Spore-bearing lactic acid bacteria isolated from rhizosphere I. Taxonomic studies on Bacillus laevolacticus nov. sp. and Bacillus racemilacticus nov. sp. | Journal of General and Applied Microbiology | 13(2), page(s): 139-153 | 10.2323/jgam.13.139 |
| Hatayama2006 | summary, general characteristics, enzymes, acid from carbohydrates | Tuberibacillus calidus, Pullulanibacillus naganoensis, Sporolactobacillus laevolacticus | 2006 |
Hatayama K, Shoun H, Ueda Y, Nakamura A. |
Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolactobacillus laevolacticus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 1), page(s): 2545-2551 | 10.1099/ijs.0.64303-0 |
| Yoon2001b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sporosarcina aquimarina, Sporosarcina globispora, Sporosarcina psychrophila, Sporosarcina pasteurii | 2001 |
Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH, Park YH. |
Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of th. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 1079-1086 | 10.1099/00207713-51-3-1079 |
| Tominaga2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food source | Sporosarcina luteola | 2009 |
Tominaga T, An SY, Oyaizu H, Yokota A. |
Sporosarcina luteola sp. nov. isolated from soy sauce production equipment in Japan. | Journal of General and Applied Microbiology | 55(3), page(s): 217-223 | 10.2323/jgam.55.217 |
| Schleifer1982a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Staphylococcus carnosus | 1982 |
Schleifer, K.H. and Fischer, U. |
Description of a New Species of the Genus Staphylococcus: Staphylococcus carnosus | International Journal of Systematic and Evolutionary Microbiology | 32(2), page(s): 153-156 | 10.1099/00207713-32-2-153 |
| Pantucek1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Staphylococcus carnosus, Staphylococcus piscifermentans | 1999 |
Pantucek R, Sedlacek I, Doskar J, Rosypal S. |
Complex genomic and phenotypic characterization of the related species Staphylococcus carnosus and Staphylococcus piscifermentans. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 3), page(s): 941-951 | 10.1099/00207713-49-3-941 |
| Supre2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food source | Staphylococcus devriesei | 2010 |
Supré K, De Vliegher S, Cleenwerck I, Engelbeen K, Van Trappen S, Piepers S, Sampimon OC, Zadoks RN, De Vos P, Haesebrouck F. |
Staphylococcus devriesei sp. nov., isolated from teat apices and milk of dairy cows. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 12), page(s): 2739-2744 | 10.1099/ijs.0.015982-0 |
| Devriese1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Staphylococcus hyicus | 1978 |
Devriese, L. A., Hajek, V., Oeding, P., Meyer, S. A. and Schleifer, K. H. |
Staphylococcus hyicus (Sompolinsky 1953) comb. nov. and Staphylococcus hyicus subsp. chromogenes subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 28(4), page(s): 482-490 | 10.1099/00207713-28-4-482 |
| Pantucek2013 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, clinical sources | Staphylococcus petrasii | 2013 |
Pantucek R, Svec P, Dajcs JJ, Machova I, Cernohlavkova J, Sedo O, Gelbicova T, Maslanova I, Doskar J, Zdrahal Z, Ruzickova V, Sedlacek I. |
Staphylococcus petrasii sp. nov. including S. petrasii subsp. petrasii subsp. nov. and S. petrasii subsp. croceilyticus subsp. nov., isolated from human clinical specimens and human ear infections. | Systematic and Applied Microbiology | 36(2), page(s): 90-95 | 10.1016/j.syapm.2012.11.004 |
| DeBel2013 | clinical sources | Staphylococcus petrasii | 2013 |
De Bel A, Van Hoorde K, Wybo I, Vandoorslaer K, Echahidi F, De Brandt E, Schumann P, Ieven M, Soetens O, Piérard D, Vandamme P. |
Staphylococcus jettensis sp. nov., a coagulase-negative staphylococcal species isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 9), page(s): 3250-3256 | 10.1099/ijs.0.044438-0 |
| DeBel2014 | summary, general characteristics, enzymes, acid from carbohydrates | Staphylococcus petrasii | 2014 |
De Bel A, Svec P, Petras P, Sedlacek I, Pantucek R, Echahidi F, Pierard D, Vandamme P. |
Reclassification of Staphylococcus jettensis De Bel et al. 2013 as Staphylococcus petrasii subsp. jettensis subsp. nov. and emended description of Staphylococcus petrasii Pantucek et al. 2013. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 12), page(s): 4198-4201 | 10.1099/ijs.0.064758-0 |
| Lawson2005a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus castoreus | 2005 |
Lawson PA, Foster G, Falsen E, Markopoulos SJ, Collins MD. |
Streptococcus castoreus sp. nov., isolated from a beaver (Castor fiber). | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 843-846 | 10.1099/ijs.0.63433-0 |
| Zbinden2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, blood infection | Streptococcus tigurinus | 2012 |
Zbinden A, Mueller NJ, Tarr PE, Spröer C, Keller PM, Bloemberg GV. |
Streptococcus tigurinus sp. nov., isolated from blood of patients with endocarditis, meningitis and spondylodiscitis. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 12), page(s): 2941-2945 | 10.1099/ijs.0.038299-0 |
| Bekal2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, urinary tract infection | Streptococcus pseudoporcinus | 2006 |
Bekal S, Gaudreau C, Laurence RA, Simoneau E, Raynal L. |
Streptococcus pseudoporcinus sp. nov., a novel species isolated from the genitourinary tract of women. | Journal of Clinical Microbiology | 44(7), page(s): 2584-2586 | 10.1128/JCM.02707-05 |
| Coykendall1974 | summary, acid from carbohydrates | Streptococcus sobrinus | 1974 |
Coykendall AL. |
Four types of Streptococcus mutans based on their genetic, antigenic and biochemical characteristics. | Journal of General Microbiology | 83(2), page(s): 327-338 | 10.1099/00221287-83-2-327 |
| Coykendall1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks | Streptococcus sobrinus, Streptococcus ferus | 1983 |
Coykendall, Alan L. |
Streptococcus sobrinus nom. rev. and Streptococcus ferus nom. rev.: Habitat of These and Other Mutans Streptococci | International Journal of Systematic and Evolutionary Microbiology | 33(4), page(s): 883-885 | 10.1099/00207713-33-4-883 |
| Coykendall1977 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus sobrinus, Streptococcus ferus | 1977 |
Coykendall, Alan L. |
Proposal to Elevate the Subspecies of Streptococcus mutans to Species Status, Based on Their Molecular Composition | International Journal of Systematic and Evolutionary Microbiology | 27(1), page(s): 26-30 | 10.1099/00207713-27-1-26 |
| Ricaboni2016g | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Streptococcus timonensis | 2016 |
Ricaboni D, Mailhe M, Lagier JC, Michelle C, Armstrong N, Bittar F, Vitton V, Benezech A, Raoult D, Million M. |
Noncontiguous finished genome sequence and description of Streptococcus timonensis sp. nov. isolated from the human stomach. | New Microbes New Infections | 15, page(s): 77-88 | 10.1016/j.nmni.2016.11.013 |
| Lee2005a | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Streptomyces koyangensis | 2005 |
Lee JY, Lee JY, Jung HW, Hwang BK. |
Streptomyces koyangensis sp. nov., a novel actinomycete that produces 4-phenyl-3-butenoic acid. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 257-262 | 10.1099/ijs.0.63168-0 |
| Liu2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Terribacillus aidingensis | 2010 |
Liu W, Jiang L, Guo C, Yang SS. |
Terribacillus aidingensis sp. nov., a moderately halophilic bacterium. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 12), page(s): 2940-2945 | 10.1099/ijs.0.017228-0 |
| An2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Terribacillus saccharophilus, Terribacillus halophilus | 2007 |
An SY, Asahara M, Goto K, Kasai H, Yokota A. |
Terribacillus saccharophilus gen. nov., sp. nov. and Terribacillus halophilus sp. nov., spore-forming bacteria isolated from field soil in Japan. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 1), page(s): 51-55 | 10.1099/ijs.0.64340-0 |
| Lee2005b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Tetragenococcus koreensis | 2005 |
Lee M, Kim MK, Vancanneyt M, Swings J, Kim SH, Kang MS, Lee ST. |
Tetragenococcus koreensis sp. nov., a novel rhamnolipid-producing bacterium. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 4), page(s): 1409-1413 | 10.1099/ijs.0.63448-0 |
| Jaffres2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food spoilage | Vagococcus penaei | 2010 |
Jaffrès E, Prévost H, Rossero A, Joffraud JJ, Dousset X. |
Vagococcus penaei sp. nov., isolated from spoilage microbiota of cooked shrimp (Penaeus vannamei). | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 9), page(s): 2159-2164 | 10.1099/ijs.0.012872-0 |
| Wullschleger2018 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, fermented foods | Vagococcus teuberi | 2018 |
Wullschleger S, Jans C, Seifert C, Baumgartner S, Lacroix C, Bonfoh B, Stevens MJA, Meile L. |
Vagococcus teuberi sp. nov., isolated from the Malian artisanal sour milk fènè. | Systematic and Applied Microbiology | 41(2), page(s): 65-72 | 10.1016/j.syapm.2017.11.003 |
| Stevens2017 | fermented foods | Vagococcus teuberi | 2017 |
Stevens MJ, Inglin RC, Meile L. |
Complete and Assembled Genome Sequence of Vagococcus teuberi DSM 21459T, a Novel Species Isolated from Fermented Cow Milk in Mali. | Genome Announcements | 5(4), page(s): e01514-16 | 10.1128/genomeA.01514-16 |
| Kirchberger2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks, clinical sources | Vibrio metoecus | 2014 |
Kirchberger PC, Turnsek M, Hunt DE, Haley BJ, Colwell RR, Polz MF, Tarr CL, Boucher Y. |
Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 9), page(s): 3208-3214 | 10.1099/ijs.0.060145-0 |
| Aznar1994 | genetics, taxonomy | Vibrio vulnificus | 1994 |
Aznar R, Ludwig W, Amann RI, Schleifer KH. |
Sequence determination of rRNA genes of pathogenic Vibrio species and whole-cell identification of Vibrio vulnificus with rRNA-targeted oligonucleotide probes. | International Journal of Systematic and Evolutionary Microbiology | 44(2), page(s): 330-337 | 10.1099/00207713-44-2-330 |
| Reichelt1976 | summary, general characteristics, enzymes, utilisation, genetics, taxonomy | Vibrio vulnificus | 1976 |
Reichelt JL, Baumann P, Baumann L. |
Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization. | Archives of Microbiology | 110(1), page(s): 101-120 | 10.1007/BF00416975 |
| Yoon2005c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Virgibacillus dokdonensis | 2005 |
Yoon JH, Kang SJ, Lee SY, Lee MH, Oh TK. |
Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1833-1837 | 10.1099/ijs.0.63613-0 |
| Yoon2004a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Virgibacillus halodenitrificans | 2004 |
Yoon JH, Oh TK, Park YH. |
Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2163-2167 | 10.1099/ijs.0.63196-0 |
| Denariaz1989 | Bacillus halodenitrificans | 1989 |
Denariaz, Gerard; Payne, William J. and Le Gall, Jean |
A Halophilic Denitrifier, Bacillus halodenitrificans sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 39(2), page(s): 145-151 | 10.1099/00207713-39-2-145 | |
| Proom1950 | summary | Bacillus pantothenticus | 1950 |
Proom H, Knight BC. |
Bacillus pantothenticus (n.sp.). | Journal of General Microbiology | 4(3), page(s): 539-541 | 10.1099/00221287-4-3-539 |
| Wang2015 | genetics | Virgibacillus pantothenticus | 2015 |
Wang JP, Liu B, Liu GH, Chen DJ, Zhu YJ, Chen Z, Che JM. |
Genome Sequence of Virgibacillus pantothenticus DSM 26T (ATCC 14576), a Mesophilic and Halotolerant Bacterium Isolated from Soil. | Genome Announcements | 3(5), page(s): e01064-15 | 10.1128/genomeA.01064-15 |
| Heyndrickx1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Virgibacillus pantothenticus | 1998 |
Heyndrickx, M. and Lebbe, L. and Kersters, K. and De Vos, P. and Forsyth, G. and Logan, N. A. |
Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus | International Journal of Systematic and Evolutionary Microbiology | 48(1), page(s): 99-106 | 10.1099/00207713-48-1-99 |
| Seck2015a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Virgibacillus senegalensis | 2015 |
Seck E, Rathored J, Khelaifia S, Croce O, Robert C, Couderc C, Di Pinto F, Sokhna C, Raoult D, Lagier JC. |
Virgibacillus senegalensis sp. nov., a new moderately halophilic bacterium isolated from human gut. | New Microbes New Infections | 8, page(s): 116-126 | 10.1016/j.nmni.2015.09.014 |
| Tanasupawat2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, fermented foods | Virgibacillus siamensis | 2010 |
Tanasupawat S, Chamroensaksri N, Kudo T, Itoh T. |
Identification of moderately halophilic bacteria from Thai fermented fish ( pla-ra ) and proposal of Virgibacillus siamensis sp. nov. | Journal of General and Applied Microbiology | 56(5), page(s): 369-379 | 10.2323/jgam.56.369 |
| Holmes1986a | clinical sources | Weeksella virosa | 1986 |
B. Holmes, A.G. Steigerwalt, R.E. Weaver, Don J. Brenner |
Weeksella virosa gen. no v., sp. nov. (Formerly group IIf), found in human clinical specimens. | Systematic and Applied Microbiology | 8(3), page(s): 185-190 | 10.1016/S0723-2020(86)80075-3 |
| Brenner1980b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Yersinia intermedia | 1980 |
D. J. Brenner, H. Bercovier, J. Ursing, J. Alonso, A. Steigerwalt, G. R. Fanning, G. P. Carter, H. Mollaret |
Yersinia intermedia: A new species of enterobacteriaceae composed of rhamnose-positive, melibiose-positive, raffinose-positive strains (formerly called Yersinia enterocolitica or Yersinia enterocolitica-like). | Current Microbiology | 4, page(s): 207–212 | 10.1007/BF02605858 |
| Bercovier1980a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Yersinia kristensenii subsp. kristensenii | 1980 |
Hervé Bercovier, Jan Ursing, J. Don Brenner, Arnold G. Steigerwalt, G. Richard Fanning, Geraldine P. Carter & H. H. Mollaret |
Yersinia kristensenii: A new species of enterobacteriaceae composed of sucrose-negative strains (formerly called atypical Yersinia enterocolitica or Yersinia enterocolitica-Like) | Current Microbiology | 4, page(s): 219-224 | 10.1007/BF02605860 |
| Greening1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Acetitomaculum ruminis | 1989 |
Greening RC, Leedle JA. |
Enrichment and isolation of Acetitomaculum ruminis, gen. nov., sp. nov.: acetogenic bacteria from the bovine rumen. | Archives of Microbiology | 151(5), page(s): 399-406 | 10.1007/BF00416597 |
| Balch1977 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Acetobacterium woodii | 1977 |
Balch, William E.; Schoberth, S.; Tanner, Ralph S.; Wolfe, R. S. |
Acetobacterium, a New Genus of Hydrogen-Oxidizing, Carbon Dioxide-Reducing, Anaerobic Bacteria | International Journal of Systematic and Evolutionary Microbiology | 27(4), page(s): 355-361 | 10.1099/00207713-27-4-355 |
| Jung2007 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation | Aestuariimicrobium kwangyangense | 2007 |
Jung SY, Kim HS, Song JJ, Lee SG, Oh TK, Yoon JH. |
Aestuariimicrobium kwangyangense gen. nov., sp. nov., an LL-diaminopimelic acid-containing bacterium isolated from tidal flat sediment. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 9), page(s): 2114-2118 | 10.1099/ijs.0.64917-0 |
| Ouwerkerk2016 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Akkermansia glycaniphila | 2016 |
Ouwerkerk JP, Aalvink S, Belzer C, de Vos WM. |
Akkermansia glycaniphila sp. nov., an anaerobic mucin-degrading bacterium isolated from reticulated python faeces. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4614-4620 | 10.1099/ijsem.0.001399 |
| Ouwerkerk2017 | genetics, taxonomy | Akkermansia glycaniphila | 2017 |
Ouwerkerk JP, Koehorst JJ, Schaap PJ, Ritari J, Paulin L, Belzer C, de Vos WM. |
Complete Genome Sequence of Akkermansia glycaniphila Strain PytT, a Mucin-Degrading Specialist of the Reticulated Python Gut. | Genome Announcements | 5(1), page(s): e01098-16 | 10.1128/genomeA.01098-16 |
| Ueki2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides propionicifaciens | 2008 |
Ueki A, Abe K, Kaku N, Watanabe K, Ueki K. |
Bacteroides propionicifaciens sp. nov., isolated from rice-straw residue in a methanogenic reactor treating waste from cattle farms. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 2), page(s): 346-352 | 10.1099/ijs.0.65486-0 |
| Schmidt2009 | summary, general characteristics, enzymes, metabolites, utilisation, fermented foods | Bavariicoccus seileri | 2009 |
Schmidt VS, Mayr R, Wenning M, Glöckner J, Busse HJ, Scherer S. |
Bavariicoccus seileri gen. nov., sp. nov., isolated from the surface and smear water of German red smear soft cheese. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 10), page(s): 2437-2443 | 10.1099/ijs.0.006601-0 |
| Michelini2016 | summary, general characteristics, enzymes, acid from carbohydrates | Bifidobacterium aerophilum, Bifidobacterium avesanii, Bifidobacterium ramosum | 2016 |
Michelini S, Modesto M, Filippini G, Spiezio C, Sandri C, Biavati B, Pisi A, Mattarelli P. |
Bifidobacterium aerophilum sp. nov., Bifidobacterium avesanii sp. nov. and Bifidobacterium ramosum sp. nov.: Three novel taxa from the faeces of cotton-top tamarin (Saguinus oedipus L.). | Systematic and Applied Microbiology | 39(4), page(s): 229-236 | 10.1016/j.syapm.2016.04.005 |
| Simpson2003 | genetics, taxonomy, image | Bifidobacterium aerophilum | 2003 |
Simpson PJ, Stanton C, Fitzgerald GF, Ross RP. |
Genomic diversity and relatedness of bifidobacteria isolated from a porcine cecum. | Journal of Bacteriology | 185(8), page(s): 2571-2581 | 10.1128/JB.185.8.2571-2581.2003 |
| Endo2012 | summary, general characteristics, acid from carbohydrates | Bifidobacterium biavatii, Bifidobacterium reuteri, Bifidobacterium callitrichos, Bifidobacterium saguini, Bifidobacterium stellenboschense | 2012 |
Endo A, Futagawa-Endo Y, Schumann P, Pukall R, Dicks LM. |
Bifidobacterium reuteri sp. nov., Bifidobacterium callitrichos sp. nov., Bifidobacterium saguini sp. nov., Bifidobacterium stellenboschense sp. nov. and Bifidobacterium biavatii sp. nov. isolated from faeces of common marmoset (Callithrix jacchus) and red-handed tamarin (Saguinus midas). | Systematic and Applied Microbiology | 35(2), page(s): 92-97 | 10.1016/j.syapm.2011.11.006 |
| Li2015a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brenneria populi Li et al. 2015 | 2015 |
Li Y, Fang W, Xue H, Liang WX, Wang LF, Tian GZ, Wang XZ, Lin CL, Li X, Piao CG. |
Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 2), page(s): 432-437 | 10.1099/ijs.0.066068-0 |
| Zheng2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brenneria populi Li et al. 2015, Brenneria populi subsp. brevivirga | 2017 |
Zheng MH, Piao CG, Xue H, Guo MW, Li Y. |
Brenneria populi subsp. brevivirga subsp. nov. isolated from symptomatic bark of Populus × euramericana canker, and description of Brenneria populi subsp. populi subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 67(9), page(s): 3633-3638 | 10.1099/ijsem.0.002183 |
| Munson1991 | summary | Buchnera aphidicola | 1991 |
Munson, Mark A. and Baumann, Paul and Kinsey, Marvin G. |
Buchnera gen. nov. and Buchnera aphidicola sp. nov., a Taxon Consisting of the Mycetocyte-Associated, Primary Endosymbionts of Aphids | International Journal of Systematic and Evolutionary Microbiology | 41(4), page(s): 566-568 | 10.1099/00207713-41-4-566 |
| Rossi2009 | summary, general characteristics, enzymes, metabolites, antibiotics | Campylobacter avium | 2009 |
Rossi M, Debruyne L, Zanoni RG, Manfreda G, Revez J, Vandamme P. |
Campylobacter avium sp. nov., a hippurate-positive species isolated from poultry. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 9), page(s): 2364-2369 | 10.1099/ijs.0.007419-0 |
| Pagnier2015 | summary | Candidatus Babela massiliensis | 2015 |
Pagnier I, Yutin N, Croce O, Makarova KS, Wolf YI, Benamar S, Raoult D, Koonin EV, La Scola B. |
Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae. | Biology Direct | 10, page(s): 13 | 10.1186/s13062-015-0043-z |
| Cohen2011 | summary, antibiotics | Candidatus Babela massiliensis | 2011 |
Cohen G, Hoffart L, La Scola B, Raoult D, Drancourt M. |
Ameba-associated Keratitis, France. | Emerging Infectious Diseases | 17(7), page(s): 1306-1308 | 10.3201/eid1707.100826 |
| Bressan2009 | Candidatus Purcelliella pentastirinorum | 2009 |
Bressan A, Arneodo J, Simonato M, Haines WP, Boudon-Padieu E. |
Characterization and evolution of two bacteriome-inhabiting symbionts in cixiid planthoppers (Hemiptera: Fulgoromorpha: Pentastirini). | Environmental Microbiology | 11(12), page(s): 3265-3279 | 10.1111/j.1462-2920.2009.02055.x | |
| Schink2004 | summary, general characteristics, metabolites, utilisation | Clostridium magnum | 2004 |
Schink, B. |
Clostridium magnum sp. nov., a non-autotrophic homoacetogenic bacterium. | Archives of Microbiology | 137, page(s): 250-255 | 10.1007/BF00414553 |
| Yanagawa1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Corynebacterium cystitidis | 1978 |
Yanagawa, Ryo and Honda, Eiichi |
Corynebacterium pilosum and Corynebacterium cystitidis, Two New Species from Cows | International Journal of Systematic and Evolutionary Microbiology | 28(2), page(s): 209-216 | 10.1099/00207713-28-2-209 |
| Sjoden1998 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, clinical sources | Corynebacterium falsenii | 1998 |
Sjödén B, Funke G, Izquierdo A, Akervall E, Collins MD. |
Description of some coryneform bacteria isolated from human clinical specimens as Corynebacterium falsenii sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 48(Pt 1), page(s): 69-74 | 10.1099/00207713-48-1-69 |
| Ferreira1997 | summary, general characteristics, enzymes, metabolites, utilisation | Deinococcus geothermalis, Deinococcus murrayi | 1997 |
Ferreira AC, Nobre MF, Rainey FA, Silva MT, Wait R, Burghardt J, Chung AP, da Costa MS. |
Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. | International Journal of Systematic and Evolutionary Microbiology | 47(4), page(s): 939-947 | 10.1099/00207713-47-4-939 |
| Rozanova1976 | summary | Desulfomicrobium baculatum | 1976 |
Rozanova EP, Nazina TN. |
Mezofil'naia palochkovidnaia bessporovaia bakteriia, vosstanavliviushchaia sul'faty [Mesophilic rod-like nonsporeforming bacterium reducing sulfates]. | Mikrobiologiia | 45(5), page(s): 825-830 | 1004270 PMID |
| Rozanova1988 | summary, general characteristics, metabolites, utilisation | Desulfomicrobium apsheronum, Desulfomicrobium baculatum | 1988 |
E.P. Rozanova, Tamara N. Nazina, Alexander Galushko |
Isolation of a new genus of sulfate-reducing bacteria and description of a new species of this genus, Desulfomicrobium apsheronum gen. nov., sp. nov. | Microbiology | 57(4), page(s): 514-520 | |
| Cox2017 | summary, general characteristics, enzymes, metabolites, utilisation, urinary tract infection | Ileibacterium valens, Dubosiella newyorkensis, Faecalibaculum rodentium | 2017 |
Cox LM, Sohn J, Tyrrell KL, Citron DM, Lawson PA, Patel NB, Iizumi T, Perez-Perez GI, Goldstein EJC, Blaser MJ. |
Description of two novel members of the family Erysipelotrichaceae: Ileibacterium valens gen. nov., sp. nov. and Dubosiella newyorkensis, gen. nov., sp. nov., from the murine intestine, and emendation to the description of Faecalibaculum rodentium. | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1247-1254 | 10.1099/ijsem.0.001793 |
| Geissinger2009 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Elusimicrobium minutum | 2009 |
Geissinger O, Herlemann DP, Mörschel E, Maier UG, Brune A. |
The ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the first cultivated representative of the termite group 1 phylum. | Applied and Environmental Microbiology | 75(9), page(s): 2831-2840 | 10.1128/AEM.02697-08 |
| Morandi2012 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, fermented foods | Enterococcus lactis | 2012 |
Morandi S, Cremonesi P, Povolo M, Brasca M. |
Enterococcus lactis sp. nov., from Italian raw milk cheeses. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 8), page(s): 1992-1996 | 10.1099/ijs.0.030825-0 |
| Ren2016 | summary, general characteristics, enzymes, acid from carbohydrates, fermented foods | Enterococcus Xinjiangensis | 2016 |
Ren, Xiaopu; Mingyang Li & Dongqi Guo |
Enterococcus Xinjiangensis sp. nov., Isolated from Yogurt of Xinjiang, China. | Current Microbiology | 73, page(s): 374-378 | 10.1007/s00284-016-1065-1 |
| Lim2016 | genetics, taxonomy | Erysipelothrix larvae | 2016 |
Lim S, Rhee MS, Chang DH, Kim BC. |
Whole-genome sequence of Erysipelothrix larvae LV19(T) (=KCTC 33523(T)), a useful strain for arsenic detoxification, from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus. | Journal of Biotechnology | 223, page(s): 40-41 | 10.1016/j.jbiotec.2016.02.030 |
| Bang2015 | summary, general characteristics, enzymes, utilisation | Erysipelothrix larvae | 2015 |
Bang BH, Rhee MS, Chang DH, Park DS, Kim BC. |
Erysipelothrix larvae sp. nov., isolated from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus (Coleoptera: Scarabaeidae). | Antonie Van Leeuwenhoek | 107(2), page(s): 443-451 | 10.1007/s10482-014-0342-x |
| Wallace2003 | summary, general characteristics, metabolites, utilisation | Eubacterium pyruvativorans | 2003 |
Wallace RJ, McKain N, McEwan NR, Miyagawa E, Chaudhary LC, King TP, Walker ND, Apajalahti JHA, Newbold CJ. |
Eubacterium pyruvativorans sp. nov., a novel non-saccharolytic anaerobe from the rumen that ferments pyruvate and amino acids, forms caproate and utilizes acetate and propionate. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 965-970 | 10.1099/ijs.0.02110-0 |
| Fujii2014 | summary, general characteristics, enzymes, metabolites, antibiotics, water source | Flavobacterium longum, Flavobacterium urocaniciphilum, Flavobacterium caeni, Flavobacterium terrigena | 2014 |
Fujii D, Nagai F, Watanabe Y, Shirasawa Y. |
Flavobacterium longum sp. nov. and Flavobacterium urocaniciphilum sp. nov., isolated from a wastewater treatment plant, and emended descriptions of Flavobacterium caeni and Flavobacterium terrigena. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 5), page(s): 1488-1494 | 10.1099/ijs.0.054312-0 |
| Liu2010a | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation, quirks | Flavobacterium caeni | 2010 |
Liu Y, Jin JH, Zhou YG, Liu HC, Liu ZP. |
Flavobacterium caeni sp. nov., isolated from a sequencing batch reactor for the treatment of malachite green effluents. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 2), page(s): 417-421 | 0.1099/ijs.0.010603-0 |
| Stephan2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Franconibacter helveticus, Franconibacter pulveris, Siccibacter turicensis | 2014 |
Stephan R, Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Tall BD. |
Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 10), page(s): 3402-3410 | 10.1099/ijs.0.059832-0 |
| Stephan2008 | food contamination | Enterobacter pulveris | 2008 |
Stephan R, Van Trappen S, Cleenwerck I, Iversen C, Joosten H, De Vos P, Lehner A. |
Enterobacter pulveris sp. nov., isolated from fruit powder, infant formula and an infant formula production environment. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 1), page(s): 237-241 | 10.1099/ijs.0.65427-0 |
| Basso2005 | summary, general characteristics, metabolites, utilisation | Desulfovibrio putealis | 2005 |
Basso O, Caumette P, Magot M. |
Desulfovibrio putealis sp. nov., a novel sulfate-reducing bacterium isolated from a deep subsurface aquifer. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 101-104 | 10.1099/ijs.0.63303-0 |
| Baik2005 | summary, general characteristics, enzymes, metabolites, utilisation | Hahella ganghwensis | 2005 |
Baik KS, Seong CN, Kim EM, Yi H, Bae KS, Chun J. |
Hahella ganghwensis sp. nov., isolated from tidal flat sediment. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 2), page(s): 681-684 | 10.1099/ijs.0.63411-0 |
| Collins2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, wound infections | Helcococcus sueciensis | 2004 |
Collins MD, Falsen E, Brownlee K, Lawson PA. |
Helcococcus sueciensis sp. nov., isolated from a human wound. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 5), page(s): 1557-1560 | 10.1099/ijs.0.63077-0 |
| Liesack1994 | summary, general characteristics, metabolites, utilisation | Holophaga foetida | 1994 |
Liesack W, Bak F, Kreft JU, Stackebrandt E. |
Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. | Archives of Microbiology | 162(1-2), page(s): 85-90 | 10.1007/BF00264378 |
| Willems1995b | genetics, taxonomy | Johnsonella ignava, Catonella morbi | 1995 |
Willems A, Collins MD. |
Evidence for the placement of the gram-negative Catonella morbi (Moore and Moore) and Johnsonella ignava (Moore and Moore) within the Clostridium subphylum of the gram-positive bacteria on the basis of 16S rRNA sequences. | International Journal of Systematic and Evolutionary Microbiology | 45(4), page(s): 855-857 | 10.1099/00207713-45-4-855 |
| Iino2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks | Lacticigenium naphtae | 2009 |
Iino T, Suzuki K, Harayama S. |
Lacticigenium naphtae gen. nov., sp. nov., a halotolerant and motile lactic acid bacterium isolated from crude oil. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 4), page(s): 775-780 | 10.1099/ijs.0.003293-0 |
| Bell2016 | summary, general characteristics, utilisation | Lawsonella clevelandensis | 2016 |
Bell ME, Bernard KA, Harrington SM, Patel NB, Tucker TA, Metcalfe MG, McQuiston JR. |
Lawsonella clevelandensis gen. nov., sp. nov., a new member of the suborder Corynebacterineae isolated from human abscesses. | International Journal of Systematic and Evolutionary Microbiology | 66(8), page(s): 2929-2935 | 10.1099/ijsem.0.001122 |
| Nicholson2015a | clinical sources | Lawsonella clevelandensis | 2015 |
Nicholson AC, Bell M, Humrighouse BW, McQuiston JR. |
Complete Genome Sequences for Two Strains of a Novel Fastidious, Partially Acid-Fast, Gram-Positive Corynebacterineae Bacterium, Derived from Human Clinical Samples. | Genome Announcements | 3(6), page(s): e01462-15 | 10.1128/genomeA.01462-15 |
| denBakker2014 | summary, general characteristics, enzymes, acid from carbohydrates | Listeria floridensis, Listeria aquatica, Listeria cornellensis, Listeria riparia, Listeria grandensis | 2014 |
den Bakker HC, Warchocki S, Wright EM, Allred AF, Ahlstrom C, Manuel CS, Stasiewicz MJ, Burrell A, Roof S, Strawn LK, Fortes E, Nightingale KK, Kephart D, Wiedmann M. |
Listeria floridensis sp. nov., Listeria aquatica sp. nov., Listeria cornellensis sp. nov., Listeria riparia sp. nov. and Listeria grandensis sp. nov., from agricultural and natural environments. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 6), page(s): 1882-1889 | 10.1099/ijs.0.052720-0 |
| Angen1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Mannheimia haemolytica, Mannheimia granulomatis, Mannheimia glucosida, Mannheimia ruminalis, Mannheimia varigena | 1999 |
Angen O, Mutters R, Caugant DA, Olsen JE, Bisgaard M. |
Taxonomic relationships of the [Pasteurella] haemolytica complex as evaluated by DNA-DNA hybridizations and 16S rRNA sequencing with proposal of Mannheimia haemolytica gen. nov., comb. nov., Mannheimia granulomatis comb. nov., Mannheimia glucosida sp. nov., Mannheimia ruminalis sp. nov. and Mannheimia varigena sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 1), page(s): 67-86 | 10.1099/00207713-49-1-67 |
| Davies1996 | taxonomy, genetics | Mannheimia haemolytica | 1996 |
Davies RL, Paster BJ, Dewhirst FE. |
Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis. | International Journal of Systematic Bacteriology | 46(3), page(s): 736-744 | 10.1099/00207713-46-3-736 |
| Mcgarrity1983 | summary, general characteristics | Mycoplasma muris | 1983 |
Mcgarrity, G. J.; Rose, D. L.; Kwiatkowski, V.; Dion, A. S.;Phillips, D. M.; Tully, J. G. |
Mycoplasma muris, a New Species from Laboratory Mice | International Journal of Systematic and Evolutionary Microbiology | 33(2), page(s): 350-355 | 10.1099/00207713-33-2-350 |
| Hollis1969 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Neisseria lactamicus | 1969 |
Hollis DG, Wiggins GL, Weaver RE. |
Neisseria lactamicus sp. n., a lactose-fermenting species resembling Neisseria meningitidis. | Applied Microbiology | 17(1), page(s): 71-77 | 10.1128/am.17.1.71-77.1969 |
| Wolfgang2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, clinical sources | Neisseria wadsworthii, Neisseria shayeganii | 2011 |
Wolfgang WJ, Carpenter AN, Cole JA, Gronow S, Habura A, Jose S, Nazarian EJ, Kohlerschmidt DJ, Limberger R, Schoonmaker-Bopp D, Spröer C, Musser KA. |
Neisseria wadsworthii sp. nov. and Neisseria shayeganii sp. nov., isolated from clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 1), page(s): 91-98 | 10.1099/ijs.0.022426-0 |
| Qiu2014 | summary, general characteristics, enzymes, metabolites, utilisation | Paludibacter jiangxiensis | 2014 |
Qiu YL, Kuang XZ, Shi XS, Yuan XZ, Guo RB. |
Paludibacter jiangxiensis sp. nov., a strictly anaerobic, propionate-producing bacterium isolated from rice paddy field. | Archives of Microbiology | 196(3), page(s): 149-155 | 10.1007/s00203-013-0951-1 |
| Yoon2007 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Pedobacter lentus, Pedobacter terricola | 2007 |
Yoon JH, Kang SJ, Park S, Oh TK. |
Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov., isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 9), page(s): 2089-2095 | 10.1099/ijs.0.65146-0 |
| Zhou2012a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pedobacter arcticus, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus, Pedobacter lentus | 2012 |
Zhou Z, Jiang F, Wang S, Peng F, Dai J, Li W, Fang C. |
Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil, and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus and Pedobacter lentus. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 8), page(s): 1963-1969 | 10.1099/ijs.0.031104-0 |
| Ueki2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides paurosaccharolyticus | 2011 |
Ueki A, Abe K, Ohtaki Y, Kaku N, Watanabe K, Ueki K. |
Bacteroides paurosaccharolyticus sp. nov., isolated from a methanogenic reactor treating waste from cattle farms. | International Journal of Systematic and Evolutionary Microbiology | 61(Pt 2), page(s): 448-453 | 10.1099/ijs.0.022566-0 |
| Downes2009b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, oral cavity | Prevotella micans | 2009 |
Downes J, Liu M, Kononen E, Wade WG. |
Prevotella micans sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 4), page(s): 771-774 | 10.1099/ijs.0.002337-0 |
| Zhang2017 | summary, general characteristics | Pseudoruegeria marinistellae | 2017 |
Zhang Y, Xu Y, Fang W, Wang X, Fang Z, Xiao Y. |
Pseudoruegeria marinistellae sp. nov., isolated from an unidentified starfish in Sanya, China. | Antonie Van Leeuwenhoek | 110(2), page(s): 187-194 | 10.1007/s10482-016-0789-z |
| Liang2021 | genetics, taxonomy | Pseudoruegeria marinistellae | 2021 |
Liang KYH, Orata FD, Boucher YF, Case RJ. |
Roseobacters in a Sea of Poly- and Paraphyly: Whole Genome-Based Taxonomy of the Family Rhodobacteraceae and the Proposal for the Split of the "Roseobacter Clade" Into a Novel Family, Roseobacteraceae fam. nov. | Frontiers in Microbiology | 12(683109), | 10.3389/fmicb.2021.683109 |
| Chen2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, food waste | Saccharofermentans acetigenes | 2010 |
Chen S, Niu L, Zhang Y. |
Saccharofermentans acetigenes gen. nov., sp. nov., an anaerobic bacterium isolated from sludge treating brewery wastewater. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 12), page(s): 2735-2738 | 10.1099/ijs.0.017590-0 |
| Ezaki1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Peptostreptococcus heliotrinreducens | 1986 |
Ezaki, Takayuki And Yabuuchi, Eiko |
Transfer of Peptococcus heliotrinreducens corrig. to the Genus Peptostreptococcus: Peptostreptococcus heliotrinreducens Lanigan 1983 comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 36(1), page(s): 107-108 | 10.1099/00207713-36-1-107 |
| Lanigan1976 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Slackia heliotrinireducens | 1976 |
Lanigan GW. |
Peptococcus heliotrinreducans, sp. nov., a cytochrome-producing anaerobe which metabolizes pyrrolizidine alkaloids. | Journal of General Microbiology | 94(1), page(s): 1-10 | 10.1099/00221287-94-1-1 |
| Woo2014 | arthritis, summary, general characteristics, enzymes, antibiotics | Streptobacillus hongkongensis, Streptobacillus moniliformis | 2014 |
Woo PCY, Wu AKL, Tsang CC, Leung KW, Ngan AHY, Curreem SOT, Lam KW, Chen JHK, Chan JFW, Lau SKP. |
Streptobacillus hongkongensis sp. nov., isolated from patients with quinsy and septic arthritis, and emended descriptions of the genus Streptobacillus and Streptobacillus moniliformis. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 9), page(s): 3034-3039 | 10.1099/ijs.0.061242-0 |
| Clavel2013a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Streptococcus danieliae | 2013 |
Clavel T, Charrier C, Haller D. |
Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse. | Archives of Microbiology | 195(1), page(s): 43-49 | 10.1007/s00203-012-0846-6 |
| Rurangirwa2000 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks | Streptococcus didelphis | 2000 |
Rurangirwa FR, Teitzel CA, Cui J, French DM, McDonough PL, Besser T. |
Streptococcus didelphis sp. nov., a streptococcus with marked catalase activity isolated from opossums (Didelphis virginiana) with suppurative dermatitis and liver fibrosis. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 2), page(s): 759-765 | 10.1099/00207713-50-2-759 |
| Whatmore2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus ferus | 2002 |
Whatmore AM, Whiley RA. |
Whatmore AM, Whiley RA. Re-evaluation of the taxonomic position of Streptococcus ferus. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 5), page(s): 1783-1787 | 10.1099/00207713-52-5-1783 |
| Baele2003a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Streptococcus ferus | 2003 |
Baele M, Devriese LA, Vancanneyt M, Vaneechoutte M, Snauwaert C, Swings J, Haesebrouck F. |
Emended description of Streptococcus ferus isolated from pigs and rats. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 143-146 | 10.1099/ijs.0.02246-0 |
| Bai2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus pantholopis | 2016 |
Bai X, Xiong Y, Lu S, Jin D, Lai X, Yang J, Niu L, Hu S, Meng X, Pu J, Ye C, Xu J. |
Streptococcus pantholopis sp. nov., isolated from faeces of the Tibetan antelope (Pantholops hodgsonii). | International Journal of Systematic and Evolutionary Microbiology | 66(9), page(s): 3281-3286 | 10.1099/ijsem.0.001189 |
| Nomoto2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus parasuis | 2015 |
Nomoto R, Maruyama F, Ishida S, Tohya M, Sekizaki T, Osawa R. |
Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22 and 26: Streptococcus parasuis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 2), page(s): 438-443 | 10.1099/ijs.0.067116-0 |
| Woo2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, endocarditis | Streptococcus sinensis | 2002 |
Woo PC, Tam DM, Leung KW, Lau SK, Teng JL, Wong MK, Yuen KY. |
Streptococcus sinensis sp. nov., a novel species isolated from a patient with infective endocarditis. | Journal of Clinical Microbiology | 40(3), page(s): 805-810 | 10.1128/JCM.40.3.805-810.2002 |
| Schumacher1992 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Sulfurospirillum deleyianum | 2004 |
Schumacher, W., Kroneck, P.M., & Pfennig, N. |
Comparative systematic study on “Spirillum” 5175, Campylobacter and Wolinella species. Description of "Spirillum" 5175 as Sulfurospirillum deleyianum gen. nov., spec. nov. | Archives of Microbiology | 158, page(s): 287-293 | 10.1007/BF00245247 |
| Smibert1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, oral cavity | Treponema pectinovorum | 1983 |
Smibert, R.M. and Burmeister, J.A. |
Treponema pectinovorum sp. nov. Isolated from Humans with Periodontitis | International Journal of Systematic and Evolutionary Microbiology | 33(4), page(s): 852-856 | 10.1099/00207713-33-4-852 |
| Kraatz2008 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Veillonella magna | 2008 |
Kraatz M, Taras D. |
Veillonella magna sp. nov., isolated from the jejunal mucosa of a healthy pig, and emended description of Veillonella ratti. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 12), page(s): 2755-2761 | 10.1099/ijs.0.2008/001032-0 |
| Thompson2003a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, food source | Vibrio neptunius, Vibrio brasiliensis, Vibrio xuii | 2003 |
Thompson FL, Li Y, Gomez-Gil B, Thompson CC, Hoste B, Vandemeulebroecke K, Rupp GS, Pereira A, De Bem MM, Sorgeloos P, Swings J. |
Vibrio neptunius sp. nov., Vibrio brasiliensis sp. nov. and Vibrio xuii sp. nov., isolated from the marine aquaculture environment (bivalves, fish, rotifers and shrimps). | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 245-252 | 10.1099/ijs.0.02447-0 |
| Strohl1986 | summary, general characteristics, enzymes, utilisation | Vitreoscilla beggiatoides, Vitreoscilla filiformis, Vitreoscilla stercoraria, Beggiatoa alba | 1986 |
Strohl, William R., Thomas M. Schmidt, Nelson H. Lawry, Maurice J. Mezzino and John M. Larkin. |
Characterization of Vitreoscilla beggiatoides and Vitreoscilla filiformis sp. nov., nom. rev., and comparison with Vitreoscilla stercoraria and Beggiatoa alba. | International Journal of Systematic and Evolutionary Microbiology | 36(Pt 2), page(s): 302-313 | 10.1099/00207713-36-2-302 |
| Lee2021 | health, Crohn's disease, summary, general characteristics, metabolites, antibiotics, quirks, butyrate | Anaerostipes hominis | 2021 |
Lee JY, Kang W, Shin NR, Hyun DW, Kim PS, Kim HS, Lee JY, Tak EJ, Sung H, Bae JW. |
Anaerostipes hominis sp. nov., a novel butyrate-producing bacteria isolated from faeces of a patient with Crohn's disease. | International Journal of Systematic and Evolutionary Microbiology | 71(12), | 10.1099/ijsem.0.005129 |
| Zhang2021 | summary, general characteristics | Corynebacterium zhongnanshanii, Corynebacterium lujinxingii, Corynebacterium wankanglinii | 2021 |
Zhang G, Yang J, Lai XH, Jin D, Lu S, Ren Z, Qin T, Pu J, Ge Y, Cheng Y, Yang C, Lv X, Jiao Y, Huang Y, Xu J. |
Corynebacterium zhongnanshanii sp. nov. isolated from trachea of Marmota himalayana, Corynebacterium lujinxingii sp. nov. and Corynebacterium wankanglinii sp. nov. from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 71(11), | 10.1099/ijsem.0.005069 |
| Kitahara2021 | summary | Pusillimonas faecalis, Vescimonas fastidiosa, Vescimonas coprocola | 2021 |
Kitahara M, Shigeno Y, Shime M, Matsumoto Y, Nakamura S, Motooka D, Fukuoka S, Nishikawa H, Benno Y. |
Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 71(11), | 10.1099/ijsem.0.005066 |
| Lu2021 | summary, general characteristics, enzymes, metabolites, utilisation, fermented foods | Blautia liquoris | 2021 |
Lu LF, Yang Y, Chai LJ, Lu ZM, Zhang LQ, Qin H, Yang P, Xu ZH, Shen CH. |
Blautia liquoris sp. nov., isolated from the mud in a fermentation cellar used for the production of Chinese strong-flavour liquor. | International Journal of Systematic and Evolutionary Microbiology | 71(10), | 10.1099/ijsem.0.005041 |
| Belkhou2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Treponema peruense | 2021 |
Belkhou C, Tadeo RT, Bacigalupe R, Valles-Colomer M, Chaffron S, Joossens M, Obregon A, Marín Reyes L, Trujillo O, Huys GRB, Raes J. |
Treponema peruense sp. nov., a commensal spirochaete isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 71(10), page(s): 005050 | 10.1099/ijsem.0.005050 |
| Stoll2021a | summary, general characteristics, enzymes, metabolites, quirks | Adlercreutzia rubneri | 2021 |
Stoll DA, Danylec N, Soukup ST, Hetzer B, Kulling SE, Huch M. |
Adlercreutzia rubneri sp. nov., a resveratrol-metabolizing bacterium isolated from human faeces and emended description of the genus Adlercreutzia. | International Journal of Systematic and Evolutionary Microbiology | 71(9), page(s): 004987 | 10.1099/ijsem.0.004987 |
| Xiao2021 | gut microbiome | 2021 |
Xiao Y, Zhao J, Zhang H, Zhai Q, Chen W. |
Mining genome traits that determine the different gut colonization potential of Lactobacillus and Bifidobacterium species. | Microbial Genomics | 7(6), page(s): 000581 | 10.1099/mgen.0.000581 | |
| Ge2021 | summary | Bacteroides luhongzhouii, Bacteroides zhangwenhongi | 2021 |
Ge Y, Zhang G, Yang J, Lai XH, Jin D, Lu S, Pu J, Huang Y, Luo X, Zheng H, Zhang X, Xu J. |
Bacteroides luhongzhouii sp. nov. and Bacteroides zhangwenhongii sp. nov., isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 71(4), | 10.1099/ijsem.0.004772 |
| vanderPutten2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Escherichia ruysiae | 2021 |
van der Putten BCL, Matamoros S, Mende DR, Scholl ER, Consortium C, Schultsz C. |
Escherichia ruysiae sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller. | International Journal of Systematic and Evolutionary Microbiology | 71(2), page(s): 004609 | 10.1099/ijsem.0.004609 |
| Sakamoto2021 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Adlercreutzia hattorii | 2021 |
Sakamoto M, Ikeyama N, Yuki M, Murakami T, Mori H, Iino T, Ohkuma M. |
Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces. | International Journal of Systematic and Evolutionary Microbiology | 71(12), | 10.1099/ijsem.0.005121 |
| LeGuern2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Yersinia artesiana, Yersinia proxima, Yersinia alsatica, Yersinia vastinensis, Yersinia thracica, Yersinia occitanica | 2020 |
Le Guern AS, Savin C, Angermeier H, Brémont S, Clermont D, Mühle E, Orozova P, Najdenski H, Pizarro-Cerdá J. |
Yersinia artesiana sp. nov., Yersinia proxima sp. nov., Yersinia alsatica sp. nov., Yersina vastinensis sp. nov., Yersinia thracica sp. nov. and Yersinia occitanica sp. nov., isolated from humans and animals. | International Journal of Systematic and Evolutionary Microbiology | 70(10), page(s): 5363-5372 | 10.1099/ijsem.0.004417 |
| Wang2021 | summary, general characteristics, metabolites | Blautia intestinalis | 2021 |
Wang YJ, Abdugheni R, Liu C, Zhou N, You X, Liu SJ. |
Blautia intestinalis sp. nov., isolated from human feces. | International Journal of Systematic and Evolutionary Microbiology | 71(9), | 10.1099/ijsem.0.005005 |
| Velazquez2020 | genetics, taxonomy | Agrobacterium tumefaciens | 2020 |
Velázquez E, Flores-Félix JD, Sánchez-Juanes F, Igual JM, Peix Á. |
Strain ATCC 4720T is the authentic type strain of Agrobacterium tumefaciens, which is not a later heterotypic synonym of Agrobacterium radiobacter. | International Journal of Systematic and Evolutionary Microbiology | 70(9), page(s): 5172-5176 | 10.1099/ijsem.0.004443 |
| Ndongo2019a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides bouchesdurhonensis | 2019 |
Ndongo S, Tall ML, Ngom II, Fournier PE, Levasseur A, Raoult D, Khelaifia S. |
Genome sequence and description of Bacteroides bouchesdurhonensis sp. nov., a new anaerobic bacterium isolated from the human gut. | New Microbes New Infections | 31(100571), | 10.1016/j.nmni.2019.100571 |
| Ndongo2017c | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Bacteroides bouchesdurhonensis | 2017 |
Sokhna Ndongo, Jean-Christophe Lagier, Hubert Bassene, Pierre-Edouard Fournier |
Bacteroides bouchesdurhonensis sp. nov., a new bacterium isolated from the human gut | Human Microbiome Journal | 3, page(s): 11-12 | 10.1016/j.humic.2017.01.003 |
| Sanden2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Bordetella parapertussis, Bordetella bronchiseptica, Bordetalla pertussis, Bordetella trematum, Bordetella hinzii | 2005 |
Gary N. Sanden and Robbin S. Weyant |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Alcaligenaceae, Genus III. Bordetella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 662-671 | ISBN-13: 978-0387-24145-6 |
| Talento2013 | clinical, summary, antibiotics | Brevibacterium otitidis | 2013 |
Talento AF, Malnick H, Cotter M, Brady A, McGowan D, Smyth E, Fitzpatrick F. |
Brevibacterium otitidis: an elusive cause of neurosurgical infection. | Journal of Medical Microbiology | 62(Pt 3), page(s): 486-488 | 10.1099/jmm.0.043109-0 |
| Corbel2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Brucella melitensis | 2005 |
Michael J. Corbel and Menachem Banai |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Brucellaceae, Genus I. Brucella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 370-386 | ISBN-13: 978-0387-24145-6 |
| Biavati2012Bergey | summary, general characteristics, acid from carbohydrates, metabolites, antibiotics | Bifidobacterium indicum, Bifidobacterium asteroides, Bifidobacterium choerinum, Bifidobacterium longum subsp. suis, Bifidobacterium subtile | 2012 |
Bruno Biavati and Paola Mattarelli |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Bifidobacteriaceae, Genus I. Bifidobacterium | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5(B), page(s): 170 | 10.1007/978-0-387-68233-4 |
| Stackebrandt2012Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Cellulomonas flavigena, Cellulomonas composti, Cellulomonas denverensis, Cellulomonas hominis, Cellulomonas fimi | 2012 |
Erko Stackebrandt and Peter Shumann |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Cellulomonadaceae, Genus I. Cellulomonas | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 702 | 10.1007/978-0-387-68233-4 |
| Gillis2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Chromobacterium violaceum | 2005 |
Monique Gillis and Niall A. Logan |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Neisseriaceae, Genus Genus IV. Chromobacterium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 824-827 | ISBN-13: 978-0387-24145-6 |
| Bernard2012Bergey | summary, general characteristics, enzymes, acid from carbohydrates | Corynebacterium accolens, Corynebacterium afermentans, Corynebacterium ammoniagenes, Corynebacterium amycolatum, Corynebacterium appendicis, Corynebacterium aurimucosum, Corynebacterium bovis, Corynebacterium callunae, Corynebacterium coyleae, Corynebacterium cystitidis, Corynebacterium diphtheriae, Corynebacterium doosanense, Corynebacterium durum, Corynebacterium efficiens, Corynebacterium falsenii, Corynebacterium flavescens, Corynebacterium freneyi, Corynebacterium glaucum, Corynebacterium glucuronolyticum, Corynebacterium glutamicum, Corynebacterium kroppenstedtii, Corynebacterium lipophiloflavum, Corynebacterium minutissimum, Corynebacterium mucifaciens, Corynebacterium propinquum, Corynebacterium pseudodiphtheriticum, Corynebacterium pyruviciproducens, Corynebacterium riegelii, Corynebacterium simulans, Corynebacterium stationis, Corynebacterium striatum, Corynebacterium suicordis, Corynebacterium sundsvallense, Corynebacterium tuberculostearicum, Corynebacterium ulcerans, Corynebacterium urealyticum, Corynebacterium ureicelerivorans, Corynebacterium variabile, Corynebacterium xerosis | 2012 |
Kathryn A. Bernard and Guido Funke |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Corynebacteriaceae, Genus I. Corynebacterium | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 245-257 | 10.1007/978-0-387-68233-4 |
| Li2021a | genetics, taxonomy | Enterococcus lactis | 2019 |
Li YQ, Gu CT. |
Proposal of Enterococcus xinjiangensis Ren et al. 2020 as a later heterotypic synonym of Enterococcus lactis Morandi et al. 2012. | International Journal of Systematic and Evolutionary Microbiology | 71(3), | 10.1099/ijsem.0.004716 |
| Liu2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Erwinia teleogrylli | 2016 |
Liu B, Luo J, Li W, Long XF, Zhang YQ, Zeng ZG, Tian YQ. |
Erwinia teleogrylli sp. nov., a Bacterial Isolate Associated with a Chinese Cricket. | PLoS One | 11(1), page(s): e0146596 | 10.1371/journal.pone.0146596 |
| Sjostedt2005Bergey | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Francisella tularensis | 2005 |
Anders B. Sjostedt |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Francisellaceae, Genus I. Francisella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2(B), page(s): 200 | ISBN 13: 9780387241449 |
| Garrity2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Halomonas salina | 2005 |
George M. Garrity, Julia A. Bell and Timothy Lilburn |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Halomonadaceae, Genus I. Halomonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2(B), page(s): 300-313 | ISBN-13: 978-0387-24145-6 |
| Willems2011dBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Johnsonella ignava | 2011 |
Anne Willems And Matthew D. Collins |
Bergey's manual of systematic bacteriology. Vol. 3, The firmicutes. Family Lachnospiraceae, Genus X. Johnsonella | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 945 | 10.1007/b92997 |
| Winn2005Bergey | summary, general characteristics, enzymes, utilisation | Legionella bozemanae, Legionella pneumophila | 2005 |
Washington C. Winn |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Enterobacteriaceae, Genus XI. Edwardsiella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2(B), page(s): 212-236 | ISBN 13: 9780387241449 |
| Suzuki2012Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Microbacterium aurum, Microbacterium chocolatum, Microbacterium foliorum, Microbacterium gubbeenense, Microbacterium hydrocarbonoxydans, Microbacterium lacticum, Microbacterium luteolum, Microbacterium oleivorans, Microbacterium paraoxydans, Microbacterium phyllosphaerae, Microbacterium schleiferi, Microbacterium ginsengisoli, Microbacterium sediminicola, Microbacterium testaceum, Microbacterium kitamiense, Microbacterium liquefaciens, Microbacterium maritypicum, Microbacterium natoriense, Microbacterium oxydans | 2012 |
Ken-ichiro Suzuki and Moriyuki Hamada |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Microbacteriaceae, Genus I. Microbacteria | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 814 | 10.1007/978-0-387-68233-4 |
| Vicino2016 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Murdochiella massiliensis | 2016 |
Elisa Vicino, Sory Ibrahima Traore, Teresa Cimmino, Grégory Dubourg, Noemie Labas, Claudia Andrieu, Fabrizio Di Pinto, Cheikh Sokhna, Aldiouma Diallo, Didier Raoult, Jean Marc Rolain |
Non contiguous-finished genome sequence and description of Murdochiella massiliensis strain SIT12 sp. nov. | New Microbes New Infections | 14, page(s): 31-35 | 10.1016/j.nmni.2016.07.018 |
| Magee2012Bergey | summary, general characteristics, enzymes | Mycobacterium abscessus, Mycobacterium avium, Mycobacterium florentinum, Mycobacterium fortuitum, Mycobacterium gastri, Mycobacterium gordonae, Mycobacterium avium subsp. paratuberculosis, Mycobacterium colombiense, Mycobacterium interjectum, Mycobacterium kansasii, Mycobacterium lentiflavum, Mycobacterium simiae, Mycobacterium terrae, Mycobacterium tuberculosis, Mycobacterium tuberculosis variant africanum, Mycobacterium tuberculosis variant bovis | 2012 |
John G. Magee and Alan C. Ward |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Mycobacteriaceae, Genus I. Bifidobacterium | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 312 | 10.1007/978-0-387-68233-4 |
| Goodfellow2012Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Nocardia asteroides, Nocardia brevicatena, Nocardia otitidiscaviarum | 2012 |
Michael Goodfellow and Luis A. Maldonado |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Nocardiaceae, Genus I. Nocardia | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 376 | 10.1007/978-0-387-68233-4 |
| Heyrman2011aBergey | summary, general characteristics, enzymes, acid from carbohydrates | Oceanobacillus iheyensis, Oceanobacillus oncorhynchi, Oceanobacillus picturae | 2011 |
Jeroen Heyrman and Paul de Vos |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Bacilliaceae, Genus XIII. Oceanobacillus | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 181-184 | 10.1007/b92997 |
| Busse2012Bergey | summary, general characteristics, enzymes, metabolites, utilisation | Arthrobacter aurescens, Arthrobacter ilicis, Arthrobacter globiformis | 2012 |
Hans-Jurgen Busse Monika Wieser and Sandra Buczolits |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Micrococcaceae, Genus III. Arthrobacter | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 578 | 10.1007/978-0-387-68233-4 |
| Mutters2005Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Pasteurella dagmatis, Pasteurella multocida | 2005 |
Reinier Mutters, Henrik Christensen and Magne Bisgaard |
Bergey's manual of systematic bacteriology. Vol. 2, The Gammaproteobacteria Part B. Family Pasteurellaceae, Genus I. Pasteurella | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part B | 2(B), page(s): 857-866 | ISBN 13: 9780387241449 |
| Lim2006 | summary, general characteristics, enzymes, acid from carbohydrates | Bacillus koreensis | 2006 |
Lim JM, Jeon CO, Lee JC, Ju YJ, Park DJ, Kim CJ. |
Bacillus koreensis sp. nov., a spore-forming bacterium, isolated from the rhizosphere of willow roots in Korea. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 1), page(s): 59-63 | 10.1099/ijs.0.63701-0 |
| Snell1972 | summary, general characteristics, enzymes, metabolites, utilisation | Moraxella phenylpyruvica | 1972 |
Snell JJ, Hill LR, Lapage SP. |
Identification and characterization of Moraxella phenylpyruvica. | Journal of Clinical Microbiology | 25(11), page(s): 959-965 | 10.1136/jcp.25.11.959 |
| Byun2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Veillonella denticariosi | 2007 |
Byun R, Carlier JP, Jacques NA, Marchandin H, Hunter N. |
Veillonella denticariosi sp. nov., isolated from human carious dentine. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 12), page(s): 2844-2848 | 10.1099/ijs.0.65096-0 |
| McLaughlin2010 | health, gut microbiome, ulcerative colitis, pouchitis, compilation | compilation | 2010 |
McLaughlin SD, Walker AW, Churcher C, Clark SK, Tekkis PP, Johnson MW, Parkhill J, Ciclitira PJ, Dougan G, Nicholls RJ, Petrovska L. |
The bacteriology of pouchitis: a molecular phylogenetic analysis using 16S rRNA gene cloning and sequencing. | Annals of Surgery | 252(1), page(s): 90-98 | 10.1097/SLA.0b013e3181e3dc8b |
| Vandamme2013 | summary, general characteristics, enzymes, utilisation | Achromobacter insuavis, Achromobacter aegrifaciens, Achromobacter anxifer, Achromobacter dolens | 2013 |
Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ. |
Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively. | Systematic and Applied Microbiology | 36(7), page(s): 474-482 | 10.1016/j.syapm.2013.06.005 |
| Coenye2003b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, clinical sources | Achromobacter insolitus, Achromobacter spanius | 2003 |
Coenye T, Vancanneyt M, Falsen E, Swings J, Vandamme P. |
Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 6), page(s): 1819-1824 | 10.1099/ijs.0.02698-0 |
| Kuhnert2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Actinobacillus capsulatus | 2007 |
Kuhnert P, Korczak BM, Christensen H, Bisgaard M. |
Emended description of Actinobacillus capsulatus Arseculeratne 1962, 38AL. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 3), page(s): 625-632 | 10.1099/ijs.0.64659-0 |
| Thomas2006 | summary, general characteristics, enzymes, metabolites, utilisation, water source | Afipia lausannensis | 2006 |
Thomas V, Herrera-Rimann K, Blanc DS, Greub G. |
Biodiversity of amoebae and amoeba-resisting bacteria in a hospital water network. | Applied and Environmental Microbiology | 72(4), page(s): 2428-2438 | 10.1128/AEM.72.4.2428-2438.2006 |
| Jean2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aliagarivorans marinus, Aliagarivorans taiwanensis | 2009 |
Jean WD, Huang SP, Liu TY, Chen JS, Shieh WY. |
Aliagarivorans marinus gen. nov., sp. nov. and Aliagarivorans taiwanensis sp. nov., facultatively anaerobic marine bacteria capable of agar degradation. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 8), page(s): 1880-1887 | 10.1099/ijs.0.008235-0 |
| Henderson1994 | genetics, taxonomy, enzymes | Bacillus anthracis | 1994 |
Henderson I, Duggleby CJ, Turnbull PC. |
Differentiation of Bacillus anthracis from other Bacillus cereus group bacteria with the PCR. | International Journal of Systematic Bacteriology | 44(1), page(s): 99-105 | 10.1099/00207713-44-1-99 |
| Halpern2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Brachymonas chironomi | 2009 |
Halpern M, Shakèd T, Schumann P. |
Brachymonas chironomi sp. nov., isolated from a chironomid egg mass, and emended description of the genus Brachymonas. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 12), page(s): 3025-3029 | 10.1099/ijs.0.007211-0 |
| Lu2014 | summary, general characteristics, enzymes, utilisation, quirks | Bradyrhizobium ganzhouense | 2014 |
Lu JK, Dou YJ, Zhu YJ, Wang SK, Sui XH, Kang LH. |
Bradyrhizobium ganzhouense sp. nov., an effective symbiotic bacterium isolated from Acacia melanoxylon R. Br. nodules. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 6), page(s): 1900-1905 | 10.1099/ijs.0.056564-0 |
| Wauters2004 | summary, general characteristics, enzymes, antibiotics, utilisation | Brevibacterium sanguinis | 2004 |
Wauters G, Haase G, Avesani V, Charlier J, Janssens M, Van Broeck J, Delmée M. |
Identification of a novel Brevibacterium species isolated from humans and description of Brevibacterium sanguinis sp. nov. | Journal of Clinical Microbiology | 42(6), page(s): 2829-2832 | 10.1128/JCM.42.6.2829-2832.2004 |
| ZurdoPineiro2007 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Ochrobactrum cytisi | 2007 |
Zurdo-Piñeiro JL, Rivas R, Trujillo ME, Vizcaíno N, Carrasco JA, Chamber M, Palomares A, Mateos PF, Martínez-Molina E, Velázquez E. |
Ochrobactrum cytisi sp. nov., isolated from nodules of Cytisus scoparius in Spain. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 784-788 | 10.1099/ijs.0.64613-0 |
| Vanlaere2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia latens, Burkholderia diffusa, Burkholderia arboris, Burkholderia seminalis, Burkholderia metallica | 2008 |
Vanlaere E, Lipuma JJ, Baldwin A, Henry D, De Brandt E, Mahenthiralingam E, Speert D, Dowson C, Vandamme P. |
Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 7), page(s): 1580-1590 | 10.1099/ijs.0.65634-0 |
| BouananeDarenfed2015 | summary, general characteristics, acid from carbohydrates | Caldicoprobacter faecalis | 2015 |
Bouanane-Darenfed A, Ben Hania W, Cayol JL, Ollivier B, Fardeau ML. |
Reclassification of Acetomicrobium faecale as Caldicoprobacter faecalis comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(10), page(s): 3286-3288 | 10.1099/ijsem.0.000409 |
| Winter1987 | summary, general characteristics, acid from carbohydrates, metabolites, quirks | Acetomicrobium faecalis | 1987 |
Winter, Josef U., E. Braun and H.-P. Zabel. |
Acetomicrobium faecalis spec, nov., a strictly anaerobic bacterium from sewage sludge, producing ethanol from pentoses. | Systematic and Applied Microbiology | 9, page(s): 71-76 | 10.1016/S0723-2020(87)80058-9 |
| Gao2018 | summary, general characteristics, enzymes, acid from carbohydrates | Caulobacter zeae, Caulobacter radicis, Caulobacter vibrioides | 2018 |
Gao JL, Sun P, Sun XH, Tong S, Yan H, Han ML, Mao XJ, Sun JG. |
Caulobacter zeae sp. nov. and Caulobacter radicis sp. nov., novel endophytic bacteria isolated from maize root (Zea mays L.). | Systematic and Applied Microbiology | 41(6), page(s): 604-610 | 10.1016/j.syapm.2018.08.010 |
| Peng2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Planobacterium taklimakanense | 2009 |
Peng F, Liu M, Zhang L, Dai J, Luo X, An H, Fang C. |
Planobacterium taklimakanense gen. nov., sp. nov., a member of the family Flavobacteriaceae that exhibits swimming motility, isolated from desert soil. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 7), page(s): 1672-1678 | 10.1099/ijs.0.006619-0 |
| Kim2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Chryseobacterium taklimakanense, Chryseobacterium frigidum, Chryseobacterium bernardetii | 2016 |
Kim T, Kim M, Kang O, Jiang F, Chang X, Liu P, Zhang Y, Da X, Zheng C, Fang C, Peng F. |
Chryseobacterium frigidum sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of Chryseobacterium bernardetii and Chryseobacterium taklimakanense. | International Journal of Systematic and Evolutionary Microbiology | 66(2), page(s): 609-615 | 10.1099/ijsem.0.000761 |
| Narayan2010 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Comamonas thiooxydans, Comamonas testosteroni, Comamonas composti | 2010 |
Narayan KD, Pandey SK, Das SK. |
Characterization of Comamonas thiooxidans sp. nov., and comparison of thiosulfate oxidation with Comamonas testosteroni and Comamonas composti. | Current Microbiology | 61(4), page(s): 248-253 | 10.1007/s00284-010-9602-9 |
| McDowell2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Propionibacterium acnes subsp. defendens | 2016 |
McDowell A, Barnard E, Liu J, Li H, Patrick S. |
Emendation of Propionibacterium acnes subsp. acnes (Deiko et al. 2015) and proposal of Propionibacterium acnes type II as Propionibacterium acnes subsp. defendens subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(12), page(s): 5358-5365 | 10.1099/ijsem.0.001521 |
| Li2008 | summary, general characteristics, enzymes, metabolites, utilisation | Dietzia schimae, Dietzia cercidiphylli | 2008 |
Li J, Zhao GZ, Zhang YQ, Klenk HP, Pukall R, Qin S, Xu LH, Li WJ. |
Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 11), page(s): 2549-2554 | 10.1099/ijs.0.2008/000919-0 |
| Mayilraj2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Dietzia kunjamensis | 2006 |
Mayilraj S, Suresh K, Kroppenstedt RM, Saini HS. |
Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 7), page(s): 1667-1671 | 10.1099/ijs.0.64212-0 |
| Vandamme1996b | genetics, taxonomy | Dysgonomonas capnocytophagoides | 1996 |
Vandamme P, Vancanneyt M, van Belkum A, Segers P, Quint WG, Kersters K, Paster BJ, Dewhirst FE. |
Polyphasic analysis of strains of the genus Capnocytophaga and Centers for Disease Control group DF-3. | International Journal of Systematic Bacteriology | 46(3), page(s): 782-791 | 10.1099/00207713-46-3-782 |
| Pascual2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Enterovibrio nigricans, Enterovibrio calviensis | 2009 |
Pascual J, Macián MC, Arahal DR, Garay E, Pujalte MJ. |
Description of Enterovibrio nigricans sp. nov., reclassification of Vibrio calviensis as Enterovibrio calviensis comb. nov. and emended description of the genus Enterovibrio Thompson et al. 2002. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 4), page(s): 698-704 | 10.1099/ijs.0.001990-0 |
| LopezCortes2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Exiguobacterium mexicanum, Exiguobacterium artemiae | 2006 |
López-Cortés A, Schumann P, Pukall R, Stackebrandt E. |
Exiguobacterium mexicanum sp. nov. and Exiguobacterium artemiae sp. nov., isolated from the brine shrimp Artemia franciscana. | Systematic and Applied Microbiology | 29(3), page(s): 183-190 | 10.1016/j.syapm.2005.09.007 |
| Lawson1999a | summary, general characteristics, enzymes, acid from carbohydrates, clinical sources | Facklamia languida | 1999 |
Lawson PA, Collins MD, Falsen E, Sjöden B, Facklam RR. |
Facklamia languida sp. nov., isolated from human clinical specimens. | Journal of Clinical Microbiology | 37(4), page(s): 1161-1164 | 10.1128/JCM.37.4.1161-1164.1999 |
| RosselloMora1995 | summary, general characteristics, enzymes, utilisation | Ferrimonas balearica | 1995 |
Ramon A. Rosselló-Mora, Wolfgang Ludwig, Peter Kämpfer, Rudolf Amann, Karl-Heinz Schleifer |
Ferrimonas balearica gen. nov., spec. nov., a New Marine Facultative Fe(III)-reducing Bacterium | Systematic and Applied Microbiology | 18(2), page(s): 196-202 | 10.1016/S0723-2020(11)80390-5 |
| Kim2006a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Flavobacterium daejeonense, Flavobacterium suncheonense | 2006 |
Kim BY, Weon HY, Cousin S, Yoo SH, Kwon SW, Go SJ, Stackebrandt E. |
Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 7), page(s): 1645-1649 | 10.1099/ijs.0.64243-0 |
| Christensen2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks | Gallibacterium anatis | 2003 |
Christensen H, Bisgaard M, Bojesen AM, Mutters R, Olsen JE. |
Genetic relationships among avian isolates classified as Pasteurella haemolytica, 'Actinobacillus salpingitidis' or Pasteurella anatis with proposal of Gallibacterium anatis gen. nov., comb. nov. and description of additional genomospecies within Gallibacterium gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 275-287 | 10.1099/ijs.0.02330-0 |
| Fu2012 | summary, general characteristics, enzymes, utilisation, antibiotics | Oceanitalea nanhaiensis | 2012 |
Fu Y, Li Q, Liu K, Xu Y, Wang Y, Jiao N. |
Oceanitalea nanhaiensis gen. nov., sp. nov., an actinobacterium isolated from seawater. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 10), page(s): 2490-2494 | 10.1099/ijs.0.038018-0 |
| Kampfer2016 | summary, general characteristics, enzymes, utilisation | Georgenia satyanarayanai | 2016 |
Kämpfer P, Glaeser SP, Busse HJ. |
Oceanitalea nanhaiensis Fu et al. 2012 is a later heterotypic synonym of Georgenia satyanarayanai Srinivas et al. 2012. | International Journal of Systematic and Evolutionary Microbiology | 66(12), page(s): 5519-5522 | 10.1099/ijsem.0.001550 |
| Srinivas2012 | summary, general characteristics, enzymes, utilisation | Georgenia satyanarayanai | 2012 |
Srinivas A, Rahul K, Sasikala C, Subhash Y, Ramaprasad EVV, Ramana CV. |
Georgenia satyanarayanai sp. nov., an alkaliphilic and thermotolerant amylase-producing actinobacterium isolated from a soda lake. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 10), page(s): 2405-2409 | 10.1099/ijs.0.036210-0 |
| Asker2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Haloferax alexandrinus | 2002 |
Asker D, Ohta Y. |
Haloferax alexandrinus sp. nov., an extremely halophilic canthaxanthin-producing archaeon from a solar saltern in Alexandria (Egypt). | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 3), page(s): 729-738 | 10.1099/00207713-52-3-729 |
| Petzoldt2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Harryflintia acetispora | 2016 |
Petzoldt D, Breves G, Rautenschlein S, Taras D. |
Harryflintia acetispora gen. nov., sp. nov., isolated from chicken caecum. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 4099-4104 | 10.1099/ijsem.0.001317 |
| Dewhirst1994 | summary, general characteristics, enzymes, metabolites, antibiotics | Helicobacter pametensis | 1994 |
Dewhirst FE, Seymour C, Fraser GJ, Paster BJ, Fox JG. |
Phylogeny of Helicobacter isolates from bird and swine feces and description of Helicobacter pametensis sp. nov. | International Journal of Systematic Bacteriology | 44(3), page(s): 553-560 | 10.1099/00207713-44-3-553 |
| Shen1997 | summary, general characteristics, enzymes, metabolites, antibiotics | Helicobacter rodentium | 1997 |
Shen Z, Fox JG, Dewhirst FE, Paster BJ, Foltz CJ, Yan L, Shames B, Perry L. |
Helicobacter rodentium sp. nov., a urease-negative Helicobacter species isolated from laboratory mice. | International Journal of Systematic Bacteriology | 47(3), page(s): 627-634 | 10.1099/00207713-47-3-627 |
| Auling1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pseudomonas pseudoflava, Pseudomonas flava | 1978 |
Auling, G. and Reh, M. and Lee, C. M. and Schlegel, H. G. |
Pseudomonas pseudoflava, a New Species of Hydrogen-Oxidizing Bacteria: Its Differentiation from Pseudomonas flava and Other Yellow-Pigmented, Gram-Negative, Hydrogen-Oxidizing Species. | International Journal of Systematic and Evolutionary Microbiology | 28(1), page(s): 82-95 | 10.1099/00207713-28-1-82 |
| Willems1989 | summary, general characteristics, enzymes, utilisation | Hydrogenophaga flava, Hydrogenophaga palleronii, Hydrogenophaga pseudoflava, Hydrogenophaga taeniospiralis | 1989 |
Willems, A. and Busse, J. and Goor, M. and Pot, B. and Falsen, E. and Jantzen, E. and Hoste, B. and Gillis, M. and Kersters, K. and Auling, G. and De Ley, J. |
Hydrogenophaga, a New Genus of Hydrogen-Oxidizing Bacteria That Includes Hydrogenophaga flava comb. nov. (Formerly Pseudomonas flava), Hydrogenophaga palleronii (Formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (Formerly Pseudomonas pseudoflava and “Pseudomonas carboxydoflava”), and Hydrogenophaga taeniospiralis (Formerly Pseudomonas taeniospiralis) | International Journal of Systematic and Evolutionary Microbiology | 39(3), page(s): 319-333 | 10.1099/00207713-39-3-319 |
| Yoon2003b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Jeotgalicoccus halotolerans, Jeotgalicoccus psychrophilus | 2003 |
Yoon JH, Lee KC, Weiss N, Kang KH, Park YH. |
Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 2), page(s): 595-602 | 10.1099/ijs.0.02132-0 |
| Brisse2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Klebsiella quasipneumoniae subsp. quasipneumoniae, Klebsiella quasipneumoniae subsp. similipneumoniae | 2014 |
Brisse S, Passet V, Grimont PAD. |
Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 9), page(s): 3146-3152 | 10.1099/ijs.0.062737-0 |
| Tvrzova2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Kocuria carniphila | 2005 |
Tvrzová L, Schumann P, Sedláček I, Páčová Z, Spröer C, Verbarg S, Kroppenstedt RM. |
Reclassification of strain CCM 132, previously classified as Kocuria varians, as Kocuria carniphila sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 1), page(s): 139-142 | 10.1099/ijs.0.63304-0 |
| Dandachi2021 | health, kidney transplant, summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Lachnoclostridium phocaeense | 2021 |
Dandachi I, Anani H, Hadjadj L, Brahimi S, Lagier JC, Daoud Z, Rolain JM. |
Genome analysis of Lachnoclostridium phocaeense isolated from a patient after kidney transplantation in Marseille. | New Microbes New Infections | 41(100863), | 10.1016/j.nmni.2021.100863 |
| Brahimi2017 | health, kidney transplant, urinary tract infection | Lachnoclostridium urinimassiliense, Lachnoclostridium phocaeense | 2017 |
Brahimi S, Cadoret F, Fournier PE, Moal V, Raoult D. |
'Lachnoclostridium urinimassiliense' sp. nov. and 'Lachnoclostridium phocaeense' sp. nov., two new bacterial species isolated from human urine after kidney transplantation. | New Microbes New Infections | 16, page(s): 73-75 | 10.1016/j.nmni.2017.01.008 |
| Krooneman2002 | summary, general characteristics, acid from carbohydrates, metabolites | Lactobacillus diolivorans | 2002 |
Krooneman J, Faber F, Alderkamp AC, Elferink SJHWO, Driehuis F, Cleenwerck I, Swings J, Gottschal JC, Vancanneyt M. |
Lactobacillus diolivorans sp. nov., a 1,2-propanediol-degrading bacterium isolated from aerobically stable maize silage. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 2), page(s): 639-646 | 10.1099/00207713-52-2-639 |
| Ribeiro1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Pasteurella granulomatis | 1989 |
Ribeiro GA, Carter GR, Frederiksen W, Riet-Correa F. |
Pasteurella haemolytica-like bacterium from a progressive granuloma of cattle in Brazil. | Journal of Clinical Microbiology | 27(6), page(s): 1401-1402 | 10.1128/jcm.27.6.1401-1402.1989 |
| Zul2008 | summary, general characteristics, enzymes, metabolites, utilisation | Massilia brevitalea | 2008 |
Zul D, Wanner G, Overmann J. |
Massilia brevitalea sp. nov., a novel betaproteobacterium isolated from lysimeter soil. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 5), page(s): 1245-1251 | 10.1099/ijs.0.65473-0 |
| MartinezHidalgo2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Mesorhizobium erdmanii, Mesorhizobium jarvisii | 2015 |
Martínez-Hidalgo P, Ramírez-Bahena MH, Flores-Félix JD, Rivas R, Igual JM, Mateos PF, Martínez-Molina E, León-Barrios M, Peix Á, Velázquez E. |
Revision of the taxonomic status of type strains of Mesorhizobium loti and reclassification of strain USDA 3471T as the type strain of Mesorhizobium erdmanii sp. nov. and ATCC 33669T as the type strain of Mesorhizobiumjarvisii sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 6), page(s): 1703-1708 | 10.1099/ijs.0.000164 |
| Shewmaker2004 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, utilisation, food contamination | Vagococcus carniphilus | 2004 |
Shewmaker PL, Steigerwalt AG, Morey RE, Carvalho MDGS, Elliott JA, Joyce K, Barrett TJ, Teixeira LM, Facklam RR. |
Vagococcus carniphilus sp. nov., isolated from ground beef. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 5), page(s): 1505-1510 | 10.1099/ijs.0.02908-0 |
| Kato2008 | summary, general characteristics, enzymes, utilisation, water source | Methylobacterium persicinum, Methylobacterium komagatae, Methylobacterium brachiatum, Methylobacterium tardum, Methylobacterium gregans | 2008 |
Kato Y, Asahara M, Goto K, Kasai H, Yokota A. |
Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 5), page(s): 1134-1141 | 10.1099/ijs.0.65583-0 |
| Urakami1990a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Methylobacterium aminovorans | 1993 |
Urakami, Teizi and Araki, Hisaya and Suzuki, Ken-Ichiro and Komagata, Kazuo |
Further Studies of the Genus Methylobacterium and Description of Methylobacterium aminovorans sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 43(3), page(s): 504-513 | 10.1099/00207713-43-3-504 |
| Wood1998 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Methylobacterium thiocyanatum | 1998 |
Wood AP, Kelly DP, McDonald IR, Jordan SL, Morgan TD, Khan S, Murrell JC, Borodina E. |
A novel pink-pigmented facultative methylotroph, Methylobacterium thiocyanatum sp. nov., capable of growth on thiocyanate or cyanate as sole nitrogen sources. | Archives of Microbiology | 169(2), page(s): 148-158 | 10.1007/s002030050554 |
| Smalley2015 | summary, general characteristics, utilisation | Methyloversatilis discipulorum | 2015 |
Smalley NE, Taipale S, De Marco P, Doronina NV, Kyrpides N, Shapiro N, Woyke T, Kalyuzhnaya MG. |
Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 65(7), page(s): 2227-2233 | 10.1099/ijs.0.000190 |
| Kageyama2006 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Microbacterium pumilum, Microbacterium aoyamense, Microbacterium deminutum | 2006 |
Kageyama A, Takahashi Y, Ōmura S. |
Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 9), page(s): 2113-2117 | 10.1099/ijs.0.64236-0 |
| PerezRodriguez2010 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Nautilia nitratireducens | 2010 |
Pérez-Rodríguez I, Ricci J, Voordeckers JW, Starovoytov V, Vetriani C. |
Nautilia nitratireducens sp. nov., a thermophilic, anaerobic, chemosynthetic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 5), page(s): 1182-1186 | 10.1099/ijs.0.013904-0 |
| Sorokin2009 | summary, general characteristics, enzymes, utilisation, quirks | Nitriliruptor alkaliphilus | 2009 |
Sorokin DY, van Pelt S, Tourova TP, Evtushenko LI. |
Nitriliruptor alkaliphilus gen. nov., sp. nov., a deep-lineage haloalkaliphilic actinobacterium from soda lakes capable of growth on aliphatic nitriles, and proposal of Nitriliruptoraceae fam. nov. and Nitriliruptorales ord. nov. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 2), page(s): 248-253 | 10.1099/ijs.0.002204-0 |
| Collins1989c | summary, general characteristics, enzymes, utilisation | Nocardioides jensenii | 1989 |
Collins, M. D. and Dorsch, M. and Stackebrandt, E. |
Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 39(1), page(s): 1-6 | 10.1099/00207713-39-1-1 |
| AlBayssari2018 | summary, general characteristics, enzymes, antibiotics, utilisation | Paenibacillus ihuae | 2018 |
C. Al-Bayssari, G. Dubourg, T. Cimmino, L. Okdah, N. Mathlouthi, T.T. Nguyen, C. Andrieu, J. Rathored, P.-E. Fournier, D. Raoult, J.-M. Rolain |
Genome sequence and description of Paenibacillus ihuae strain GD6 sp. nov., isolated from the stool of a 62-year-old Frenchman | New Microbes New Infections | 23, page(s): 77-82 | 10.1016/j.nmni.2018.02.010 |
| Yoon2003c | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Paenibacillus kribbensis, Paenibacillus terrae | 2003 |
Yoon JH, Oh HM, Yoon BD, Kang KH, Park YH. |
Paenibacillus kribbensis sp. nov. and Paenibacillus terrae sp. nov., bioflocculants for efficient harvesting of algal cells. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 295-301 | 10.1099/ijs.0.02108-0 |
| Merchant2007 | summary, general characteristics, enzymes, metabolites, utilisation, water source | Rheinheimera texasensis | 2007 |
Merchant MM, Welsh AK, McLean RJC. |
Rheinheimera texasensis sp. nov., a halointolerant freshwater oligotroph. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 10), page(s): 2376-2380 | 10.1099/ijs.0.65045-0 |
| Sisinthy2017 | genetics, taxonomy | Pararheinheimera texasensis | 2017 |
Sisinthy S, Chakraborty D, Adicherla H, Gundlapally SR. |
Emended description of the family Chromatiaceae, phylogenetic analyses of the genera Alishewanella, Rheinheimera and Arsukibacterium, transfer of Rheinheimera longhuensis LH2-2T to the genus Alishewanella and description of Alishewanella alkalitolerans sp. nov. from Lonar Lake, India. | Antonie Van Leeuwenhoek | 110(9), page(s): 1227-1241 | 10.1007/s10482-017-0896-5 |
| Sakamoto2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Prevotella multisaccharivorax | 2005 |
Sakamoto M, Umeda M, Ishikawa I, Benno Y. |
Prevotella multisaccharivorax sp. nov., isolated from human subgingival plaque. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 5), page(s): 1839-1843 | 10.1099/ijs.0.63739-0 |
| Azhar2016 | summary, general characteristics, enzymes | Pseudomonas saudiphocaensis | 2016 |
Azhar EI, Papadioti A, Bibi F, Ashshi AM, Raoult D, Angelakis E. |
'Pseudomonas saudiphocaensis' sp. nov., a new bacterial species isolated from currency notes collected during the Hajj pilgrimage in 2012 at Makkah, Saudi Arabia. | New Microbes New Infections | 15, page(s): 131-133 | 10.1016/j.nmni.2016.12.004 |
| Arnau2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Pseudomonas yamanorum | 2015 |
Arnau VG, Sánchez LA, Delgado OD. |
Pseudomonas yamanorum sp. nov., a psychrotolerant bacterium isolated from a subantarctic environment. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 2), page(s): 424-431 | 10.1099/ijs.0.065201-0 |
| Zhang2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudomonas zhaodongensis | 2015 |
Zhang L, Pan Y, Wang K, Zhang X, Zhang C, Zhang S, Fu X, Jiang J. |
Pseudomonas zhaodongensis sp. nov., isolated from saline and alkaline soils. | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 3), page(s): 1022-1030 | 10.1099/ijs.0.000057 |
| Brettar2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rheinheimera perlucida | 2006 |
Brettar I, Christen R, Höfle MG. |
Rheinheimera perlucida sp. nov., a marine bacterium of the Gammaproteobacteria isolated from surface water of the central Baltic Sea. | International Journal of Systematic and Evolutionary Microbiology | 56(Pt 9), page(s): 2177-2183 | 10.1099/ijs.0.64172-0 |
| Xu2007 | summary, general characteristics, enzymes, metabolites, utilisation | Rhodococcus qingshengii | 2007 |
Xu, Jing-Liang and He, Jian and Wang, Zhi-Chun and Wang, Kun and Li, Wen-Jun and Tang, Shu-Kun and Li, Shun-Peng |
Rhodococcus qingshengii sp. nov., a carbendazim-degrading bacterium. | International Journal of Systematic and Evolutionary Microbiology | 57(12), page(s): 2754-2757 | 10.1099/ijs.0.65095-0 |
| Okamura2009 | summary, general characteristics, metabolites, utilisation, quirks, water source | Rhodoplanes serenus | 2009 |
Okamura K, Kanbe T, Hiraishi A. |
Rhodoplanes serenus sp. nov., a purple non-sulfur bacterium isolated from pond water. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 3), page(s): 531-535 | 10.1099/ijs.0.000174-0 |
| Rubbenstroth2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Riemerella columbipharyngis, Riemerella anatipestifer, Riemerella columbina | 2013 |
Rubbenstroth D, Ryll M, Hotzel H, Christensen H, Knobloch JK, Rautenschlein S, Bisgaard M. |
Description of Riemerella columbipharyngis sp. nov., isolated from the pharynx of healthy domestic pigeons (Columba livia f. domestica), and emended descriptions of the genus Riemerella, Riemerella anatipestifer and Riemerella columbina. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 1), page(s): 280-287 | 10.1099/ijs.0.036798-0 |
| Vancanneyt1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Riemerella columbina | 1999 |
Vancanneyt, M. and Vandamme, P. and Segers, P. and Torck, U. and Coopman, R. and Kersters, K. and Hinz, K.-H. |
Riemerella columbina sp. nov., a bacterium associated with respiratory disease in pigeons | International Journal of Systematic and Evolutionary Microbiology | 49(1), page(s): 289-295 | 10.1099/00207713-49-1-289 |
| Park2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, fermented foods | Kocuria koreensis | 2010 |
Park EJ, Roh SW, Kim MS, Jung MJ, Shin KS, Bae JW. |
Kocuria koreensis sp. nov., isolated from fermented seafood. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 1), page(s): 140-143 | 10.1099/ijs.0.012310-0 |
| Sukhumavasi1988 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Clostridium josui | 1988 |
Sukhumavasi, Jiraporn and Ohmiya, Kunio and Shimizu, Shoichi and Ueno, Kazue |
Clostridium josui sp. nov., a Cellulolytic, Moderate Thermophilic Species from Thai Compost | International Journal of Systematic and Evolutionary Microbiology | 38(2), page(s): 179-182 | 10.1099/00207713-38-2-179 |
| Ashelford2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Serratia quinivorans | 2002 |
Ashelford KE, Fry JC, Bailey MJ, Day MJ. |
Characterization of Serratia isolates from soil, ecological implications and transfer of Serratia proteamaculans subsp. quinovora Grimont et al. 1983 to Serratia quinivorans corrig., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 6), page(s): 2281-2289 | 10.1099/00207713-52-6-2281 |
| Yoon2009 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Sphingomonas hankookensis | 2009 |
Yoon JH, Park S, Kang SJ, Kim |
Sphingomonas hankookensis sp. nov., isolated from wastewater. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 1), page(s): 2788-2793 | 10.1099/ijs.0.008680-0 |
| Buonaurio2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, food source | Sphingomonas melonis | 2002 |
Buonaurio R, Stravato VM, Kosako Y, Fujiwara N, Naka T, Kobayashi K, Cappelli C, Yabuuchi E. |
Sphingomonas melonis sp. nov., a novel pathogen that causes brown spots on yellow Spanish melon fruits. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 6), page(s): 2081-2087 | 10.1099/00207713-52-6-2081 |
| Lee2007b | summary, general characteristics | Bacillus ginsengihumi | 2007 |
Lee, Myungjin and Ten, Leonid and Baek, Sang-Hoon and Im, Wan Taek and Aslam, Zubair and Lee, Sung-Taik |
Bacillus ginsengihumi sp. nov., a novel species isolated from soil of a ginseng field in Pocheon Province, South Korea. | Antonie van Leeuwenhoek | 91, page(s): 127-135 | |
| Jensen2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus anginosus subsp. whileyi, Streptococcus constellatus subsp. viborgensis | 2013 |
Jensen A, Hoshino T, Kilian M. |
Taxonomy of the Anginosus group of the genus Streptococcus and description of Streptococcus anginosus subsp. whileyi subsp. nov. and Streptococcus constellatus subsp. viborgensis subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 7), page(s): 2506-2519 | 10.1099/ijs.0.043232-0 |
| Milinovich2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus henryi, Streptococcus caballi | 2008 |
Milinovich GJ, Burrell PC, Pollitt CC, Bouvet A, Trott DJ. |
Streptococcus henryi sp. nov. and Streptococcus caballi sp. nov., isolated from the hindgut of horses with oligofructose-induced laminitis. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 1), page(s): 262-266 | 10.1099/ijs.0.65063-0 |
| Whiley1988a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus downei | 1988 |
Whiley, R. A. and Russell, R. R. B. and Hardie, J. M. and Beighton, D. |
Streptococcus downei sp. nov. for Strains Previously Described as Streptococcus mutans Serotype h | International Journal of Systematic and Evolutionary Microbiology | 38(1), page(s): 25-29 | 10.1099/00207713-38-1-25 |
| Tappe2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus merionis | 2009 |
Tappe D, Pukall R, Schumann P, Gronow S, Spiliotis M, Claus H, Brehm K, Vogel U. |
Streptococcus merionis sp. nov., isolated from Mongolian jirds (Meriones unguiculatus). | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 4), page(s): 766-770 | 10.1099/ijs.0.65823-0 |
| Collins2001a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus ovis | 2001 |
Collins MD, Hutson RA, Hoyles L, Falsen E, Nikolaitchouk N, Foster G. |
Streptococcus ovis sp. nov., isolated from sheep. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 1147-1150 | 10.1099/00207713-51-3-1147 |
| Vela2009 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus plurextorum | 2009 |
Vela AI, Casamayor A, Sánchez Del Rey V, Domínguez L, Fernández-Garayzábal JF. |
Streptococcus plurextorum sp. nov., isolated from pigs. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 3), page(s): 504-508 | 10.1099/ijs.0.65636-0 |
| Vela2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Streptococcus porci | 2010 |
Vela AI, Perez M, Zamora L, Palacios L, Domínguez L, Fernández-Garayzábal JF. |
Streptococcus porci sp. nov., isolated from swine sources. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 1), page(s): 104-108 | 10.1099/ijs.0.011171-0 |
| Huch2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, throat | Streptococcus rubneri | 2013 |
Huch M, De Bruyne K, Cleenwerck I, Bub A, Cho GS, Watzl B, Snauwaert I, Franz CMAP, Vandamme P. |
Streptococcus rubneri sp. nov., isolated from the human throat. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 11), page(s): 4026-4032 | 10.1099/ijs.0.048538-0 |
| Miller2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks, dairy foods | Bacillus wiedmannii | 2016 |
Miller RA, Beno SM, Kent DJ, Carroll LM, Martin NH, Boor KJ, Kovac J. |
Bacillus wiedmannii sp. nov., a psychrotolerant and cytotoxic Bacillus cereus group species isolated from dairy foods and dairy environments. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4744-4753 | 10.1099/ijsem.0.001421 |
| Meile1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, quirks, fermented foods | Bifidobacterium lactis | 1997 |
Leo Meile, Wolfgang Ludwig, Ursula Rueger, Christina Gut, Peter Kaufmann, Gottfried Dasen, Susanne Wenger and Michael Teuber |
Bifidobacterium lactis sp. nov., a Moderately Oxygen Tolerant Species Isolated from Fermented Milk | Systematic and Applied Microbiology | 20(1), page(s): 57-64 | 10.1016/S0723-2020(97)80048-3 |
| Vancanneyt2005Bergey | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Brevundimonas aurantiaca, Brevundimonas intermedia | 2005 |
Marc Vancanneyt, Paul Segers, Wolf-Rainer Abraham and Paul De Vos |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Caulobacteraceae, Genus III. Brevundimonas | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 308-316 | ISBN-13: 978-0387-24145-6 |
| Poindexter2005Bergey | summary, general characteristics, enzymes, utilisation, quirks | Caulobacter vibrioides | 2005 |
Jeanne S. Poindexter |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Caulobacteraceae, Genus I. Caulobacter | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 287-303 | ISBN-13: 978-0387-24145-6 |
| Vedel2006 | summary, general characteristics, acid from carbohydrates, antibiotics, urinary tract infection | Corynebacterium pseudogenitalium | 2006 |
Vedel G, Toussaint G, Riegel P, Fouilladieu JL, Billöet A, Poyart C. |
Corynebacterium pseudogenitalium urinary tract infection. | Emerging Infectious Diseases | 12(2), page(s): 355-356 | 10.3201/eid1202.050950 |
| Evangelista1984 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Corynebacterium pseudogenitalium | 1984 |
Evangelista AT, Coppola KM, Furness G. |
Relationship between group JK corynebacteria and the biotypes of Corynebacterium genitalium and Corynebacterium pseudogenitalium. | Canadian Journal of Microbiology | 30(8), page(s): 1052-1057 | 10.1139/m84-164 |
| Evtushenko2012Bergey | summary, general characteristics, enzymes, utilisation | Nocardioides jensenii | 2012 |
LI Evtushenko, VI Krausova and Yoon J-H |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Nocardioidaceae, Genus I. Nocardioides | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 1197-1225 | 10.1007/978-0-387-68233-4 |
| Grimont1982 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Serratia quinivorans | 1982 |
Grimont, Patrick A. D., Francine Grimont and Kinue Irino. |
Biochemical characterization of Serratia liquefaciens sensu stricto, Serratia proteamaculans, and Serratia grimesii sp. nov. 7 (2005): 69-74. | Current Microbiology | 7, page(s): 69-74 | 10.1007/BF01568416 |
| Forster2019 | gut microbiome, compilation | compilation | 2019 |
Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, Dunn M, Mkandawire TT, Zhu A, Shao Y, Pike LJ, Louie T, Browne HP, Mitchell AL, Neville BA, Finn RD, Lawley TD. |
A human gut bacterial genome and culture collection for improved metagenomic analyses. | Nature Biotechnology | 37(2), page(s): 186-192 | 10.1038/s41587-018-0009-7. |
| Almeida2019 | gut microbiome, compilation | compilation | 2019 |
Almeida A, Mitchell AL, Boland M, Forster SC, Gloor GB, Tarkowska A, Lawley TD, Finn RD. |
A new genomic blueprint of the human gut microbiota. | Nature | 568(7753), page(s): 499-504 | 10.1038/s41586-019-0965-1 |
| Zou2019 | gut microbiome, compilation | compilation | 2019 |
Zou Y, Xue W, Luo G, Deng Z, Qin P, Guo R, Sun H, Xia Y, Liang S, Dai Y, Wan D, Jiang R, Su L, Feng Q, Jie Z, Guo T, Xia Z, Liu C, Yu J, Lin Y, Tang S, Huo G, Xu X, Hou Y, Liu X, Wang J, Yang H, Kristiansen K, Li J, Jia H, Xiao L. |
1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses. | Nature Biotechnology | 37(2), page(s): 179-185 | 10.1038/s41587-018-0008-8 |
| Nielsen2014 | gut microbiome, compilation | compilation | 2014 |
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; |
MetaHIT Consortium. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. | Nature Biotechnology | 32(8), page(s): 822-828 | 10.1038/nbt.2939 |
| Tyakht2013 | gut microbiome, compilation | compilation | 2013 |
Tyakht AV, Kostryukova ES, Popenko AS, Belenikin MS, Pavlenko AV, Larin AK, Karpova IY, Selezneva OV, Semashko TA, Ospanova EA, Babenko VV, Maev IV, Cheremushkin SV, Kucheryavyy YA, Shcherbakov PL, Grinevich VB, Efimov OI, Sas EI, Abdulkhakov RA, Abdulkhakov SR, Lyalyukova EA, Livzan MA, Vlassov VV, Sagdeev RZ, Tsukanov VV, Osipenko MF, Kozlova IV, Tkachev AV, Sergienko VI, Alexeev DG, Govorun VM. |
Human gut microbiota community structures in urban and rural populations in Russia. | Nature Communications | 4, page(s): 2469 | 10.1038/ncomms3469 |
| Rothschild2018 | gut microbiome, compilation | compilation | 2018 |
Rothschild D, Weissbrod O, Barkan E, Kurilshikov A, Korem T, Zeevi D, Costea PI, Godneva A, Kalka IN, Bar N, Shilo S, Lador D, Vila AV, Zmora N, Pevsner-Fischer M, Israeli D, Kosower N, Malka G, Wolf BC, Avnit-Sagi T, Lotan-Pompan M, Weinberger A, Halpern Z, Carmi S, Fu J, Wijmenga C, Zhernakova A, Elinav E, Segal E. |
Environment dominates over host genetics in shaping human gut microbiota. | Nature | 555(7695), page(s): 210-215 | 10.1038/nature25973 |
| Guettler1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Actinobacillus succinogenes | 1999 |
Guettler MV, Rumler D, Jain MK. |
Actinobacillus succinogenes sp. nov., a novel succinic-acid-producing strain from the bovine rumen. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 1), page(s): 207-216 | 10.1099/00207713-49-1-207 |
| Feio2004 | summary, general characteristics, metabolites, utilisation, quirks | Desulfovibrio alaskensis | 2004 |
Feio MJ, Zinkevich V, Beech IB, Llobet-Brossa E, Eaton P, Schmitt J, Guezennec J. |
Desulfovibrio alaskensis sp. nov., a sulphate-reducing bacterium from a soured oil reservoir. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 5), page(s): 1747-1752 | 10.1099/ijs.0.63118-0 |
| Waite2020 | genetics, taxonomy | Oleidesulfovibrio alaskensis, Megalodesulfovibrio gigas, Oleidesulfovibrio vietnamensis | 2020 |
Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. |
Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities. | International Journal of Systematic and Evolutionary Microbiology | 70(11), page(s): 5972-6016 | 10.1099/ijsem.0.004213 |
| Lee2002a | summary, general characteristics, metabolites, utilisation, antibiotics | Mannheimia succiniciproducens | 2002 |
Lee PC, Lee SY, Hong SH, Chang HN. |
Isolation and characterization of a new succinic acid-producing bacterium, Mannheimia succiniciproducens MBEL55E, from bovine rumen. | Applied Microbiology and Biotechnology | 58(5), page(s): 663-668 | 10.1007/s00253-002-0935-6 |
| Baar2003 | summary, general characteristics | Wolinella succinogenes | 2003 |
Baar C, Eppinger M, Raddatz G, Simon J, Lanz C, Klimmek O, Nandakumar R, Gross R, Rosinus A, Keller H, Jagtap P, Linke B, Meyer F, Lederer H, Schuster SC. |
Complete genome sequence and analysis of Wolinella succinogenes. Proc Natl Acad Sci U S A. | Proceeding of the National Academy of Sciences | 100(20), page(s): 11690-11695 | 10.1073/pnas.1932838100 |
| Wolin1961 | summary, general characteristics, enzymes, utilisation | Vibrio succinogenes | 1961 |
Wolin MJ, Wolin EA, Jacobs NJ. |
Cytochrome-producing anaerobic Vibrio succinogenes, sp. n. | Journal of Bacteriology | 81(6), page(s): 911-917 | 10.1128/jb.81.6.911-917.1961 |
| Sayavedra2021 | summary, general characteristics, utilisation, quirks | Desulfovibrio diazotrophicus | 2021 |
Sayavedra, L., Li, T., Bueno Batista, M., Seah, B.K.B., Booth, C., Zhai, Q., Chen, W. and Narbad, A. |
Desulfovibrio diazotrophicus sp. nov., a sulfate-reducing bacterium from the human gut capable of nitrogen fixation. | Environmental Microbiology | 23, page(s): 3164-3181 | 10.1111/1462-2920.15538 |
| DeVos1989 | summary | Pseudomonas boreopolis | 1989 |
De Vos, P.; Van Landschoot, A.; Segers, P.; Tytgat, R.; Gillis, M.; Bauwens, M.; Rossau, R.; Goor, M.; Pot, B.; Kersters, K.; Lizzaraga, P. and De Ley, J. |
Genotypic Relationships and Taxonomic Localization of Unclassified Pseudomonas and Pseudomonas-Like Strains by Deoxyribonucleic Acid:Ribosomal Ribonucleic Acid Hybridizations | International Journal of Systematic and Evolutionary Microbiology | 39(1), page(s): 35-49 | 10.1099/00207713-39-1-35 |
| Derrien2010 | mucin, oral cavity | 2010 |
Derrien M, van Passel MW, van de Bovenkamp JH, Schipper RG, de Vos WM, Dekker J. |
Mucin-bacterial interactions in the human oral cavity and digestive tract. | Gut Microbes | 1(4), page(s): 254-268 | 10.4161/gmic.1.4.12778 | |
| BacDiveAPI | general characteristics | 2022 |
Reimer, L. C., Vetcininova, A., Sardà Carbasse, J., Söhngen, C., Gleim, D., Ebeling, C., Overmann, J. |
BacDive API(R) test finder (bacdive.dsmz.de/api-test-finder) | ||||
| Benno1986 | gut microbiome, compilation | compilation | 1986 |
Benno Y, Suzuki K, Suzuki K, Narisawa K, Bruce WR, Mitsuoka T. |
Comparison of the fecal microflora in rural Japanese and urban Canadians. | Microbiology and Immunology | 30(6), page(s): 521-532 | 10.1111/j.1348-0421.1986.tb02978.x |
| Ramotar1984 | gut microbiome | Arachnia propionica, Prevotella bivia, Acidipropionibacterium acidipropionici | 1984 |
Ramotar K, Conly JM, Chubb H, Louie TJ. |
Production of menaquinones by intestinal anaerobes. | The Journal of Infectious Diseases | 150(2), page(s): 213-218 | 10.1093/infdis/150.2.213. |
| Taylor1985 | gut microbiome, immunocompromised, compilation | compilation | 1985 |
Taylor GR, Kropp KD, Molina TC. |
Nine-year microflora study of an isolator-maintained immunodeficient child. | Applied and Environmental Microbiology | 50(6), page(s): 1349-1356 | 10.1128/aem.50.6.1349-1356.1985 |
| Pandey2012 | gut microbiome, infant microflora, compilation | compilation | 2012 |
Pandey PK, Verma P, Kumar H, Bavdekar A, Patole MS, Shouche YS. |
Comparative analysis of fecal microflora of healthy full-term Indian infants born with different methods of delivery (vaginal vs cesarean): Acinetobacter sp. prevalence in vaginally born infants. | Journal of Biosciences (Indian Academy of Sciences) | 37(6), page(s): 989-998 | 10.1007/s12038-012-9268-5 |
| Wang2005 | gut microbiome, compilation | compilation | 2005 |
Wang M, Ahrné S, Jeppsson B, Molin G. |
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. | FEMS Microbiology Ecology | 54(2), page(s): 219-231 | 10.1016/j.femsec.2005.03.012 |
| PerisBondia2011 | gut microbiome, active microbiome, compilation | compilation | 2011 |
Peris-Bondia F, Latorre A, Artacho A, Moya A, D'Auria G. |
The active human gut microbiota differs from the total microbiota. | PLoS One | 6(7), page(s): e22448 | 10.1371/journal.pone.0022448 |
| Finegold1977 | gut microbiome, diet, compilation | compilation | 1977 |
Finegold SM, Sutter VL, Sugihara PT, Elder HA, Lehmann SM, Phillips RL. |
Fecal microbial flora in Seventh Day Adventist populations and control subjects. | The American Journal of Clinical Nutrition | 30(11), page(s): 1781-1792 | 10.1093/ajcn/30.11.1781 |
| Favier2002 | gut microbiome, compilation | compilation | 2002 |
Favier CF, Vaughan EE, De Vos WM, Akkermans AD. |
Molecular monitoring of succession of bacterial communities in human neonates. | Applied and Environmental Microbiology | 68(1), page(s): 219-226 | 10.1128/AEM.68.1.219-226.2002 |
| Dubourg2013 | gut microbiome, TB-resistance, compilation | compilation | 2013 |
Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D. |
The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics. | European Journal of Clinical Microbiology and Infectious Disease | 32(5), page(s): 637-645 | 10.1007/s10096-012-1787-3 |
| Mangin2004 | health, gut microbiome, Crohn's disease, compilation | compilation | 2004 |
Mangin I, Bonnet R, Seksik P, Rigottier-Gois L, Sutren M, Bouhnik Y, Neut C, Collins MD, Colombel JF, Marteau P, Doré J. |
Molecular inventory of faecal microflora in patients with Crohn's disease. | FEMS Microbiology Ecology | 50(1), page(s): 25-36 | 10.1016/j.femsec.2004.05.005 |
| Woodmansey2004 | gut microbiome, antibiotics, compilation | compilation | 2004 |
Woodmansey EJ, McMurdo ME, Macfarlane GT, Macfarlane S. |
Comparison of compositions and metabolic activities of fecal microbiotas in young adults and in antibiotic-treated and non-antibiotic-treated elderly subjects. | Applied and Environmental Microbiology | 70(10), page(s): 6113-6122 | 10.1128/AEM.70.10.6113-6122.2004 |
| Kumar1978 | antibiotics | Citrobacter freundii, Citrobacter intermedius, Serratia marcescens, Erwinia herbicola, Erwinia cloacae, Pantoea agglomerans | 1978 |
Kumar A, Sharma VK. |
Enterobacteria of emerging pathogenic significance from clinical cases in man and animals and detection of toads and wall lizards as their reservoirs. | Antonie Van Leeuwenhoek | 44(2), page(s): 219-228 | 10.1007/BF00643224 |
| Frank2007 | health, IBD, gut microbiome, inflammatory bowel disease, compilation | compilation | 2007 |
Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. |
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. | Proceeding of the National Academy of Sciences USA | 104(34), page(s): 13780-13785 | 10.1073/pnas.0706625104 |
| deGoffau2013 | gut microbiome, diabetes, compilation | compilation | 2013 |
de Goffau MC, Luopajärvi K, Knip M, Ilonen J, Ruohtula T, Härkönen T, Orivuori L, Hakala S, Welling GW, Harmsen HJ, Vaarala O. |
Fecal microbiota composition differs between children with β-cell autoimmunity and those without. | Diabetes | 62(4), page(s): 1238-1244 | 10.2337/db12-0526 |
| Zupancic2012 | health, gut microbiome, metabolic syndrome, compilation | compilation | 2012 |
Margaret L. Zupancic, Brandi L. Cantarel, Zhenqiu Liu, Elliott F. Drabek, Kathleen A. Ryan, Shana Cirimotich, Cheron Jones, Rob Knight, William A. Walters, Daniel Knights, Emmanuel F. Mongodin, Richard B. Horenstein, Braxton D. Mitchell, Nanette Steinle, Soren Snitker, Alan R. Shuldiner, Claire M. Fraser |
Analysis of the Gut Microbiota in the Old Order Amish and Its Relation to the Metabolic Syndrome. | PLoS One | 7(8), page(s): e43052 | 10.1371/journal.pone.0043052 |
| Nam2008a | gut microbiome, compilation | compilation | 2008 |
Nam YD, Chang HW, Kim KH, Roh SW, Kim MS, Jung MJ, Lee SW, Kim JY, Yoon JH, Bae JW. |
Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people. | Journal of Microbiology | 46(5), page(s): 491-501 | 10.1007/s12275-008-0199-7 |
| MacFarlane2004 | health, ulcerative colitis, gut microbiome, inflammatory bowel disease, compilation | compilation | 2004 |
Macfarlane S, Furrie E, Cummings JH, Macfarlane GT. |
Chemotaxonomic analysis of bacterial populations colonizing the rectal mucosa in patients with ulcerative colitis. | Clinical Infectious Diseases | 38(12), page(s): 1690-1699 | 10.1086/420823 |
| Holdeman1976 | gut microbiome, stress, compilation | compilation | 1976 |
Holdeman LV, Good IJ, Moore WE. |
Human fecal flora: variation in bacterial composition within individuals and a possible effect of emotional stress. | Applied and Environmental Microbiology | 31(3), page(s): 359-375 | 10.1128/aem.31.3.359-375.1976 |
| Heilig2002 | gut microbiome, compilation | compilation | 2002 |
Heilig HG, Zoetendal EG, Vaughan EE, Marteau P, Akkermans AD, de Vos WM. |
Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. | Applied and Environmental Microbiology | 68(1), page(s): 114-123 | 10.1128/AEM.68.1.114-123.2002 |
| DalBello2006 | gut microbiome, oral cavity, compilation | compilation | 2006 |
Dal Bello F, Hertel C. |
Oral cavity as natural reservoir for intestinal lactobacilli. | Systematic and Applied Microbiology | 29(1), page(s): 69-76 | 10.1016/j.syapm.2005.07.002 |
| Bik2006 | gut microbiome, stomach, compilation | compilation | 2006 |
Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F, Perez-Perez G, Blaser MJ, Relman DA. |
Molecular analysis of the bacterial microbiota in the human stomach. | Proceeding of the National Academy of Sciences USA | 103(3), page(s): 732-737 | 10.1073/pnas.0506655103 |
| Benno1984 | gut microbiome, compilation | compilation | 1984 |
Benno Y, Sawada K, Mitsuoka T. |
The intestinal microflora of infants: composition of fecal flora in breast-fed and bottle-fed infants. | Microbiology and Immunology | 28(9), page(s): 975-986 | 10.1111/j.1348-0421.1984.tb00754.x |
| New2022 | gut microbiome, microbiome function, compilation | compilation | 2022 |
Felicia N. New, Benjamin R. Baer, Andrew G. Clark, Martin T. Wells and Ilana L. Brito |
Collective effects of human genomic variation on microbiome function. | Science Reports | 12, page(s): 3839 | 10.1038/s41598-022-07632-3 |
| Khan1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Acetivibrio cellulolyticus | 1984 |
A. W. Khan, Erin Meek, L. C. Sowden, J. Ross Colvin |
Emendation of the Genus Acetivibrio and Description of Acetivibrio cellulosolvens sp. nov., a Nonmotile Cellulolytic Mesophile. | International Journal of Systematic and Evolutionary Microbiology | 34(4), page(s): 419-422 | 10.1099/00207713-34-4-419 |
| Murray1986 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Acetivibrio cellulolyticus | 1986 |
William D. Murray |
Acetivibrio cellulosolvens Is a Synonym for Acetivibrio cellulolyticus: Emendation of the Genus Acetivibrio | International Journal of Systematic and Evolutionary Microbiology | 36(2), page(s): 314-316 | 10.1099/00207713-36-2-314 |
| Patel1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Acetivibrio cellulolyticus | 1980 |
G. B. Patel, A. W. Khan, B. J. Agnew, J. R. Colvin |
Isolation and Characterization of an Anaerobic, Cellulolytic Microorganism, Acetivibrio cellulolyticus gen. nov., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 30(1), page(s): 179-185 | 10.1099/00207713-30-1-179 |
| Pechtl2018 | genetics, taxonomy | Acetivibrio saccincola | 2018 |
Pechtl A, Rückert C, Maus I, Koeck DE, Trushina N, Kornberger P, Schwarz WH, Schlüter A, Liebl W, Zverlov VV. |
Complete Genome Sequence of the Novel Cellulolytic, Anaerobic, Thermophilic Bacterium Herbivorax saccincola Type Strain GGR1, Isolated from a Lab Scale Biogas Reactor as Established by Illumina and Nanopore MinION Sequencing. | Genome Announcements | 6(6), page(s): e01493-17 | 10.1128/genomeA.01493-17 |
| Koeck2016 | summary, general characteristics, enzymes, metabolites, utilisation | Acetivibrio saccincola | 2016 |
Koeck DE, Mechelke M, Zverlov VV, Liebl W, Schwarz WH. |
Herbivorax saccincola gen. nov., sp. nov., a cellulolytic, anaerobic, thermophilic bacterium isolated via in sacco enrichments from a lab-scale biogas reactor. | International Journal of Systematic and Evolutionary Microbiology | 66(11), page(s): 4458-4463 | 10.1099/ijsem.0.001374 |
| Watanabe2021 | genetics, taxonomy | Haploplasma axanthum, Paracholeplasma brassicae, Alteracholeplasma palmae | 2021 |
Miho Watanabe, Hisaya Kojima, Kunihiro Okano, Manabu Fukui |
Mariniplasma anaerobium gen. nov., sp. nov., a novel anaerobic marine mollicute, and proposal of three novel genera to reclassify members of Acholeplasma clusters II–IV | International Journal of Systematic and Evolutionary Microbiology | 71(12), page(s): 005138 | 10.1099/ijsem.0.005138 |
| Tully1970 | summary, general characteristics, acid from carbohydrates, metabolites | Haploplasma axanthum | 1970 |
Tully JG, Razin S. |
Acholeplasma axanthum, sp. n.: a new sterol-nonrequiring member of the Mycoplasmatales. | Journal of Bacteriology | 103(3), page(s): 751-754 | 10.1128/jb.103.3.751-754.1970 |
| Tully1994 | summary, general characteristics, acid from carbohydrates, utilisation, quirks | Paracholeplasma brassicae, Alteracholeplasma palmae | 1994 |
Tully JG, Whitcomb RF, Rose DL, Bové JM, Carle P, Somerson NL, Williamson DL, Eden-Green S. |
Acholeplasma brassicae sp. nov. and Acholeplasma palmae sp. nov., two non-sterol-requiring mollicutes from plant surfaces. | International Journal of Systematic and Evolutionary Microbiology | 44(4), page(s): 680-684 | 10.1099/00207713-44-4-680 |
| Beletsky2018 | summary, general characteristics, enzymes, antibiotics, utilisation | Acidisarcina polymorpha | 2018 |
AA, Beletsky AV, Mardanov AV, Sinninghe Damsté JS, Dedysh SN. |
Belova SE, Ravin NV, Pankratov TA, Rakitin AL, Ivanova Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands. | Frontiers in Microbiology | 9, page(s): 2775 | 10.3389/fmicb.2018.02775 |
| Wisotzkey1992 | summary, general characteristics, metabolites, utilisation | Alicyclobacillus acidocaldarius, Alicyclobacillus acidoterrestris, Alicyclobacillus cycloheptanicus | 1992 |
Wisotzkey JD, Jurtshuk P Jr, Fox GE, Deinhard G, Poralla K. |
Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. | International Journal of Systematic Bacteriology | 42(2), page(s): 263-269 | 10.1099/00207713-42-2-263 |
| Darland1971 | summary, general characteristics, utilisation, image | Bacillus acidocaldarius | 1971 |
G. Darland, T. D. Brock |
Bacillus acidocaldarius sp.nov., an Acidophilic Thermophilic Spore-forming Bacterium. | Journal of General Bacteriology | 67, page(s): 9-15 | 10.1099/00221287-67-1-9 |
| Goto2006 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation, foods | Alicyclobacillus acidocaldarius | 2006 |
Goto, K., Mochida, K., Kato, Y., Asahara, M., Ozawa, C., Kasai, H., and Yokota, A. |
Diversity of Alicyclobacillus isolated from fruit juices and their raw materials, and emended description of Alicyclobacillus acidocaldarius. | Microbiological Cultural Collections | 22(1), page(s): 1-14 | |
| Ye2004 | summary, general characteristics, enzymes, utilisation, quirks | Alkaliphilus metalliredigens | 2004 |
Ye Q, Roh Y, Carroll SL, Blair B, Zhou J, Zhang CL, Fields MW. |
Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium. | Applied and Environmental Microbiology | 70(9), page(s): 5595-5602 | 10.1128/AEM.70.9.5595-5602.2004 |
| Ueki2018 | summary, general characteristics, metabolites, utilisation, quirks | Aminipila butyrica | 2018 |
Ueki A, Goto K, Kaku N, Ueki K. |
Aminipila butyrica gen. nov., sp. nov., a strictly anaerobic, arginine-decomposing bacterium isolated from a methanogenic reactor of cattle waste. | International Journal of Systematic and Evolutionary Microbiology | 68(1), page(s): 443-448 | 10.1099/ijsem.0.002534 |
| Kim2021 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics, quirks | Aminipila terrae | 2021 |
Kim YB, Kim JY, Kim J, Song HS, Whon TW, Lee SH, Yoo S, Myoung J, Son HS, Roh SW. |
Aminipila terrae sp. nov., a strictly anaerobic bacterium isolated from river sediment. | Archives of Microbiology | 203(6), page(s): 3163-3169 | 10.1007/s00203-021-02301-x |
| Baena1999 | summary, general characteristics, metabolites, utilisation, quirks | Aminomonas paucivorans | 1999 |
Baena S, Fardeau ML, Ollivier B, Labat M, Thomas P, Garcia JL, Patel BK. |
Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium. | International Journal of Systematic Bacteriology | 49(Pt 3), page(s): 975-982 | 10.1099/00207713-49-3-975 |
| Huber1996 | summary, general characteristics, metabolites, utilisation, quirks | Ammonifex degensii | 1996 |
Huber R, Rossnagel P, Woese CR, Rachel R, Langworthy TA, Stetter KO. |
Formation of ammonium from nitrate during chemolithoautotrophic growth of the extremely thermophilic bacterium Ammonifex degensii gen. nov. sp. nov. | Systematic and Applied Microbiology | 19(1), page(s): 40-49 | 10.1016/S0723-2020(96)80007-5 |
| Diop2017 | summary, general characteristics, enzymes, female genital tract | Anaerococcus mediterraneensis | 2017 |
Diop K, Bretelle F, Fournier PE, Fenollar F. |
'Anaerococcus mediterraneensis' sp. nov., a new species isolated from human female genital tract. | New Microbes New Infections | 17, page(s): 75-76 | 10.1016/j.nmni.2017.02.007 |
| Ueki2021 | summary, general characteristics, enzymes, acid from carbohydrates | Anaerocolumna chitinilytica | 2021 |
Ueki A, Tonouchi A, Kaku N, Ueki K. |
Anaerocolumna chitinilytica sp. nov., a chitin-decomposing anaerobic bacterium isolated from anoxic soil subjected to biological soil disinfestation. | International Journal of Systematic and Evolutionary Microbiology | 71(9), | 10.1099/ijsem.0.004999 |
| Kim2021a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, water source | Anaerocolumna sedimenticola | 2021 |
Kim J, Kim JY, Song HS, Kim YB, Whon TW, Ahn SW, Lee SH, Yoo S, Kim YJ, Myoung J, Choi YE, Son HS, Roh SW. |
Anaerocolumna sedimenticola sp. nov., isolated from fresh water sediment. | Antonie Van Leeuwenhoek | 114(5), page(s): 507-513 | 10.1007/s10482-021-01536-4 |
| Mechichi1999a | summary, general characteristics, metabolites, utilisation | Clostridium xylanovorans | 1999 |
Mechichi T, Labat M, Garcia JL, Thomas P, Patel BK. |
Characterization of a new xylanolytic bacterium, Clostridium xylanovorans sp. nov. | Systematic and Applied Microbiology | 22(3), page(s): 366-371 | 10.1016/S0723-2020(99)80044-7 |
| Belduz2003 | summary, general characteristics, enzymes, metabolites, utilisation | Anoxybacillus gonensis | 2003 |
Belduz AO, Dulger S, Demirbag Z. |
Anoxybacillus gonensis sp. nov., a moderately thermophilic, xylose-utilizing, endospore-forming bacterium. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1315-1320 | 10.1099/ijs.0.02473-0 |
| Siddiqi2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Anseongella ginsenosidimutans | 2016 |
Siddiqi MZ, Liu Q, Kang MS, Kim MS, Im WT. |
Anseongella ginsenosidimutans gen. nov., sp. nov., isolated from soil cultivating ginseng. | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1125-1130 | 10.1099/ijsem.0.000844 |
| Sacks1954 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Arthrobacter citreus | 1954 |
Sacks LE |
Observations on the morphogenesis of Arthrobacter citreus, spec nov. | Journal of Bacteriology | 67(3), page(s): 342-345 | 10.1128/jb.67.3.342-345.1954 |
| Pate1973 | summary, general characteristics, utilisation | Asticcacaulis biprosthecium | 1973 |
Pate JL, Porter JS, Jordan TL. |
Asticcacaulis biprosthecum sp.nov. Life cycle, morphology and cultural characteristics. | Antonie van Leeuwenhoek | 39(4), page(s): 569-583 | 10.1007/BF02578901 |
| Huang2021 | genetics, taxonomy | Nitrogeniibacter aestuarii, Azoarcus pumilus | 2021 |
Huang Zhaobin, Liu Renju, Chen Fenghua, Lai Qiliang, Oren Aharon, Shao Zongze |
Nitrogeniibacter aestuarii sp. nov., a Novel Nitrogen-Fixing Bacterium Affiliated to the Family Zoogloeaceae and Phylogeny of the Family Zoogloeaceae Revisited. | Frontiers in Microbiology | 12, page(s): 755908 | 10.3389/fmicb.2021.755908 |
| Fu2019 | summary, general characteristics, enzymes, metabolites, utilisation | Azoarcus pumilus | 2019 |
Fu GY, Yu XY, Yu XD, Zhao Z, Chen C, Wang RJ, Wu M, Zhang XQ. |
Azoarcus pumilus sp. nov., isolated from seawater in Sanya, China. | International Journal of Systematic and Evolutionary Microbiology | 69(5), page(s): 1459-1464 | 10.1099/ijsem.0.003341 |
| Grouzdev2019 | genetics, taxonomy | Azospirillum lipoferum, Azospirillum oryzae | 2019 |
Grouzdev DS, Tikhonova EN, Kravchenko IK. |
Genome Sequences of Novel Azospirillum sp. Strains B21 and Sh1, Isolated from Raised Sphagnum Bogs, and Type Strains Azospirillum lipoferum 59b and Azospirillum oryzae COC8. | Microbiology Resource Announcements | 8(43), page(s): e01174-19 | 10.1128/MRA.01174-19 |
| Tarrand1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Azospirillum brasilense, Azospirillum lipoferum | 1978 |
Tarrand JJ, Krieg NR, Döbereiner J. A |
Taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov. and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov. | Canadian Journal of Microbiology | 24(8), page(s): 967-980 | 10.1139/m78-160 |
| Dekhil1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Azospirillum largomobile, Conglomeromonas parooensis, Azospirillum lipoferum | 1997 |
Susan Ben Dekhil, Marian Cahill, E. Stackebrandt, L.I. Sly |
Transfer of Conglomeromonas largomobilis subsp. largomobilis to the Genus Azospirillum as Azospirillum largomobile comb. nov., and Elevation of Conglomeromonas largomobilis subsp. parooensis to the New Type Species of Conglomeromonas, Conglomeromonas parooensis sp. nov. | Systematic and Applied Microbiology | 20(1), page(s): 72-77 | 10.1016/S0723-2020(97)80050-1 |
| Falk1986 | genetics, taxonomy | Azospirillum lipoferum | 1986 |
Falk, E.C.; Johnson, J.L.; Baldani, V.L.D.; Doberheiner, J.; Krieg, N.R. |
Deoxyribonucleic and Ribonucleic Acid Homology Studies of the Genera Azospirillum and Conglomeromonas | International Journal of Systematic and Evolutionary Microbiology | 36(1), page(s): 80--85 | 10.1099/00207713-36-1-80 |
| Whitehead2005 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Bacteroides coprosuis | 2005 |
Whitehead TR, Cotta MA, Collins MD, Falsen E, Lawson PA. |
Bacteroides coprosuis sp. nov., isolated from swine-manure storage pits. | International Journal of Systematic and Evolutionary Microbiology | 55(Pt 6), page(s): 2515-2518 | 10.1099/ijs.0.63869-0 |
| Hahnke2016a | genetics, taxonomy | Bacteroides coprosuis | 2016 |
Hahnke RL, Meier-Kolthoff JP, García-López M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Göker M. |
Genome-Based Taxonomic Classification of Bacteroidetes. | Frontiers in Microbiology | 7, page(s): 2003 | 10.3389/fmicb.2016.02003 |
| Okuda1985 | oral cavity | Bacteroides heparinolyticus | 1985 |
Okuda, K., Kato, T., Shiozu, J., Takazoe, I., and Nakamura, T. |
Bacteroides heparinolyticus sp. nov. Isolated from Humans with Periodontitis. | International Journal of Systematic and Evolutionary Microbiology | 35(4), page(s): 438-442 | 10.1099/00207713-35-4-438 |
| Cato1982 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Bacteroides zoogleoformans | 1982 |
Cato, E.P., Kelley, R.W., Moore, W.E.C., and Holdemanm, L.V. |
Bacteroides zoogleoformans (Weinberg, Nativelle, and Prévot 1937) corrig., comb. nov.: Emended Description | International Journal of Systematic and Evolutionary Microbiology | 32(3), page(s): 271-274 | 10.1099/00207713-32-3-271 |
| Wylensek2020 | summary, general characteristics, metabolites, utilisation | Berryella intestinalis, Sodaliphilus pleomorphus | 2020 |
Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernández SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischöder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Spröer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T. |
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. | Nature Communications | 11(1), page(s): 6389 | 10.1038/s41467-020-19929-w |
| Michelini2016a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bifidobacterium eulemuris | 2016 |
Michelini S, Modesto M, Pisi AM, Filippini G, Sandri C, Spiezio C, Biavati B, Sgorbati B, Mattarelli P. |
Bifidobacterium eulemuris sp. nov., isolated from faeces of black lemurs (Eulemur macaco). | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1567-1576 | 10.1099/ijsem.0.000924 |
| Lugli2018 | summary, general characteristics, enzymes, acid from carbohydrates | Bifidobacterium anseris, Bifidobacterium criceti, Bifidobacterium imperatoris, Bifidobacterium italicum, Bifidobacterium margollesii, Bifidobacterium parmae | 2018 |
Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M. |
Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov. | Systematic and Applied Microbiology | 41(3), page(s): 173-183 | 10.1016/j.syapm.2018.01.002 |
| Modesto2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bifidobacterium lemurum | 2015 |
Modesto M, Michelini S, Stefanini I, Sandri C, Spiezio C, Pisi A, Filippini G, Biavati B, Mattarelli P. |
Bifidobacterium lemurum sp. nov., from faeces of the ring-tailed lemur (Lemur catta). | International Journal of Systematic and Evolutionary Microbiology | 65(Pt 6), page(s): 1726-1734 | 10.1099/ijs.0.000162 |
| Matteuzzi1971 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, image | Bifidobacterium suis | 1971 |
Matteuzzi D, Crociani F, Zani G, Trovatelli LD. |
Bifidobacterium suis n. sp.: a new species of the genus Bifidobacterium isolated from pig feces. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene: I | 11(5), page(s): 387-395 | 10.1002/jobm.19710110504 |
| Harris1972 | health | Treponema hyodysenteriae | 1972 |
Harris DL, Glock RD, Christensen CR, Kinyon JM. |
Inoculation of pigs with Treponema hyodysenteriae (new species) and reproduction of the disease. | Veterinary Medicine, Small Animal Clinician | 67(1), page(s): 61-64 | 4480857 PMID |
| Kinyon1979 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Treponema hyodysenteriae | 1979 |
Kinyon, J.M., and Harris, D.L. |
Treponema innocens, a New Species of Intestinal Bacteria, and Emended Description of the Type Strain of Treponema hyodysenteriae Harris et al. | International Journal of Systematic and Evolutionary Microbiology | 29(2), | 10.1099/00207713-29-2-102 |
| Ochiai1997 | summary, general characteristics, enzymes, metabolites, utilisation | Brachyspira hyodysenteriae, Brachyspira innocens, Brachyspira pilosicoli | 1997 |
Ochiai S, Adachi Y, Mori K. |
Unification of the genera Serpulina and Brachyspira, and proposals of Brachyspira hyodysenteriae Comb. Nov., Brachyspira innocens Comb. Nov. and Brachyspira pilosicoli Comb. Nov. | Microbiology and Immunology | 41(6), page(s): 445-452 | 10.1111/j.1348-0421.1997.tb01877.x |
| Stanton1991 | summary, general characteristics, enzymes, metabolites, utilisation | Treponema hyodysenteriae, Treponema innocens | 1991 |
Stanton TB, Jensen NS, Casey TA, Tordoff LA, Dewhirst FE, Paster BJ. |
Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula gen. nov., as Serpula hyodysenteriae comb. nov. and Serpula innocens comb. nov. | International Journal of Systematic Bacteriology | 41(1), page(s): 50-58 | 10.1099/00207713-41-1-50 |
| Stanton1992 | genetics, taxonomy | Brachyspira hyodysenteriae | 1992 |
Stanton TB. |
Proposal to change the genus designation Serpula to Serpulina gen. nov. containing the species Serpulina hyodysenteriae comb. nov. and Serpulina innocens comb. nov. | International Journal of Systematic Bacteriology | 42(1), page(s): 189-190 | 10.1099/00207713-42-1-189 |
| McIlroy2017 | Brevefilum fermentans | 2017 |
McIlroy SJ, Kirkegaard RH, Dueholm MS, Fernando E, Karst SM, Albertsen M, Nielsen PH. |
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge. | Frontiers in Microbiology | 8, page(s): 1134 | 10.3389/fmicb.2017.01134 | |
| Coenye1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia gladioli | 1999 |
Coenye T, Holmes B, Kersters K, Govan JR, Vandamme P. |
Burkholderia cocovenenans (van Damme et al. 1960) Gillis et al. 1995 and Burkholderia vandii Urakami et al. 1994 are junior synonyms of Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993 and Burkholderia plantarii (Azegami et al. 1987) Urakami et al. 1994, respectively. | International Journal of Systematic Bacteriology | 49(Pt 1), page(s): 37-42 | 10.1099/00207713-49-1-37 |
| Kopecny2003 | summary, general characteristics, enzymes, metabolites, utilisation, butyrate | Pseudobutyrivibrio xylanivorans, Butyrivibrio hungatei | 2003 |
Kopečný J, Zorec M, Mrázek J, Kobayashi Y, Marinšek-Logar R. |
Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 1), page(s): 201-209 | 10.1099/ijs.0.02345-0 |
| Attwood1996 | summary, general characteristics, metabolites, utilisation | Clostridium proteoclasticum | 1996 |
Attwood GT, Reilly K, Patel BK. |
Clostridium proteoclasticum sp. nov., a novel proteolytic bacterium from the bovine rumen. | International Journal of Systematic Bacteriology | 46(3), page(s): 753-758 | 10.1099/00207713-46-3-753 |
| Moon2008 | summary, general characteristics, utilisation, butyrate | Butyrivibrio proteoclasticus | 2008 |
Moon CD, Pacheco DM, Kelly WJ, Leahy SC, Li D, Kopecny J, Attwood GT. |
Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium. | International Journal of Systematic and Evolutionary Microbiology | 58(Pt 9), page(s): 2041-2045 | 10.1099/ijs.0.65845-0 |
| Chen2021 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Caldicellulosiruptor diazotrophicus | 2021 |
Chen Y, Nishihara A, Iino T, Ohkuma M, Haruta S. |
Caldicellulosiruptor diazotrophicus sp. nov., a thermophilic, nitrogen-fixing fermentative bacterium isolated from a terrestrial hot spring in Japan. | International Journal of Systematic and Evolutionary Microbiology | 71(9), | 10.1099/ijsem.0.005014 |
| Hatmaker2019 | genetics | Caloramator sp. E03 | 2019 |
Hatmaker EA, Klingeman DM, Martin RK, Guss AM, Elkins JG. |
Complete Genome Sequence of Caloramator sp. Strain E03, a Novel Ethanologenic, Thermophilic, Obligately Anaerobic Bacterium. | Microbiology Resource Announcements | 8(32), page(s): e00708-19 | 10.1128/MRA.00708-19 |
| Wery2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, quirks | Caloranaerobacter azorensis | 2001 |
Wery N, Moricet JM, Cueff V, Jean J, Pignet P, Lesongeur F, Cambon-Bonavita MA, Barbier G. |
Caloranaerobacter azorensis gen. nov., sp. nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 5), page(s): 1789-1796 | 10.1099/00207713-51-5-1789 |
| Karnachuk2019 | summary, general characteristics, enzymes, educational | Desulforudis audaxviator | 2019 |
Karnachuk OV, Frank YA, Lukina AP, Kadnikov VV, Beletsky AV, Mardanov AV, Ravin NV. |
Domestication of previously uncultivated Candidatus Desulforudis audaxviator from a deep aquifer in Siberia sheds light on its physiology and evolution. | The ISME Journal | 13(8), page(s): 1947-1959 | 10.1038/s41396-019-0402-3 |
| Chivian2008 | summary, general characteristics, metabolites, utilisation, quirks | Desulforudis audaxviator | 2008 |
Chivian D, Brodie EL, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, Gihring TM, Lapidus A, Lin LH, Lowry SR, Moser DP, Richardson PM, Southam G, Wanger G, Pratt LM, Andersen GL, Hazen TC, Brockman FJ, Arkin AP, Onstott TC. |
Environmental genomics reveals a single-species ecosystem deep within Earth. | Science | 322(5899), page(s): 275-278 | 10.1126/science.1155495 |
| Sato2009 | summary, general characteristics, genetics | Desulfovibrio trichonymphae | 2009 |
Sato T, Hongoh Y, Noda S, Hattori S, Ui S, Ohkuma M. |
Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut. | Environmental Microbiology | 11(4), page(s): 1007-1015 | 10.1111/j.1462-2920.2008.01827.x |
| Kuwahara2017 | summary, general characteristics, metabolites, utilisation, quirks | Desulfovibrio trichonymphae | 2017 |
Kuwahara H, Yuki M, Izawa K, Ohkuma M, Hongoh Y. |
Genome of 'Ca. Desulfovibrio trichonymphae', an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut. | The ISME Journal | 11(3), page(s): 766-776 | 10.1038/ismej.2016.143 |
| McLean2020 | Nanosynbacter lyticus | 2020 |
McLean JS, Bor B, Kerns KA, Liu Q, To TT, Solden L, Hendrickson EL, Wrighton K, Shi W, He X. |
Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts. | Cell Reports | 32(3), page(s): 107939 | 10.1016/j.celrep.2020.107939 | |
| He2015 | summary, general characteristics, quirks | Nanosynbacter lyticus | 2015 |
He X, McLean JS, Edlund A, Yooseph S, Hall AP, Liu SY, Dorrestein PC, Esquenazi E, Hunter RC, Cheng G, Nelson KE, Lux R, Shi W. |
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle. | Proceeding of the National Academy of Sciences USA | 112(1), page(s): 244-249 | 10.1073/pnas.1419038112 |
| Davis1997 | fermented foods | Phytoplasma australiense | 1997 |
Davis RE, Dally EL, Gundersen DE, Lee IM, Habili N. |
"Candidatus phytoplasma australiense," a new phytoplasma taxon associated with Australian grapevine yellows. | International Journal of Systematic Bacteriology | 47(2), page(s): 262-269 | 10.1099/00207713-47-2-262 |
| White1998 | Phytoplasma australiense | 1998 |
White DT, Blackall LL, Scott PT, Walsh KB. |
Phylogenetic positions of phytoplasmas associated with dieback, yellow crinkle and mosaic diseases of papaya, and their proposed inclusion in 'Candidatus Phytoplasma australiense' and a new taxon, 'Candidatus Phytoplasma australasia'. | International Journal of Systematic Bacteriology | 48(Pt 3), page(s): 941-951 | 10.1099/00207713-48-3-941 | |
| Brenner1989 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks, wound infections | Capnocytophaga canimorsus, Capnocytophaga cynodegmi | 1989 |
Brenner DJ, Hollis DG, Fanning GR, Weaver RE. |
Capnocytophaga canimorsus sp. nov. (formerly CDC group DF-2), a cause of septicemia following dog bite, and C. cynodegmi sp. nov., a cause of localized wound infection following dog bite. | Journal of Clinical Microbiology | 27(2), page(s): 231-235 | 10.1128/jcm.27.2.231-235.1989 |
| Howell1990 | summary, antibiotics, health, hypertension | Capnocytophaga canimorsus | 1990 |
Howell JM, Woodward GR. |
Precipitous hypotension in the emergency department caused by Capnocytophaga canimorsus sp nov sepsis. | American Journal of Emergency Medicine | 8(4), page(s): 312-314 | 10.1016/0735-6757(90)90082-b |
| Zangenah2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, wound infections | Capnocytophaga stomatis | 2016 |
Zangenah S, Abbasi N, Andersson AF, Bergman P. |
Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans. | Scientific Reports | 6, page(s): 22919 | 10.1038/srep22919 |
| Flaiz2020 | summary, general characteristics, metabolites, utilisation | Caproicibacter fermentans | 2020 |
Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR. |
Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens. | International Journal of Systematic and Evolutionary Microbiology | 70(7), page(s): 4269-4279 | 10.1099/ijsem.0.004283 |
| EsquivelElizondo2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, image | Caproicibacter fermentans | 2021 |
Esquivel-Elizondo S, Bağcı C, Temovska M, Jeon BS, Bessarab I, Williams RBH, Huson DH, Angenent LT. |
The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria. | Frontiers in Microbiology | 11, page(s): 594524 | 10.3389/fmicb.2020.594524 |
| Auling1993 | summary, general characteristics, metabolites, antibiotics, utilisation, quirks | Chelatobacter heintzii, Chelatococcus asaccharovorans | 1993 |
Georg Auling, Hans-Jürgen Busse, Thomas Egli, Tarek El-Banna, Erko Stackebrandt |
Description of the Gram-Negative, Obligately Aerobic, Nitrilotriacetate (NTA)-Utilizing Bacteria as Chelatobacter heintzii, gen. nov., sp. nov., and Chelatococcus asaccharovorans, gen. nov., sp. nov. | Systematic and Applied Microbiology | 16(1), page(s): 104-112 | 10.1016/S0723-2020(11)80254-7 |
| Lee2021a | summary, general characteristics, enzymes, metabolites, utilisation | Chitinophaga agri | 2021 |
Lee, S.A., Heo, J., Kim, T.-W., Sang, M.-K., Song, J., Kwon, S.-W., and Weon, H.-Y. |
Chitinophaga agri sp. nov., a bacterium isolated from soil of reclaimed land. | Archives of Microbiology | 203(3), page(s): 809-815 | 10.1007/s00203-020-02066-9 |
| Kampfer2014 | summary, general characteristics, enzymes, metabolites | Chryseobacterium gallinarum, Chryseobacterium contaminans | 2014 |
Kämpfer P, Poppel MT, Wilharm G, Busse HJ, McInroy JA, Glaeser SP. |
Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 4), page(s): 1419-1427 | 10.1099/ijs.0.058933-0 |
| Ribeiro2017a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Citrobacter portucalensis | 2017 |
TG, Gonçalves BR, da Silva MS, Novais Â, Machado E, Carriço JA, Peixe L. |
Citrobacter portucalensis sp. nov., isolated from an aquatic sample. | International Journal of Systematic and Evolutionary Microbiology | 67(9), page(s): 3513-3517 | 10.1099/ijsem.0.002154 |
| Suen1988 | summary, general characteristics, enzymes, metabolites, utilisation | Clostridium argentinense | 1988 |
Suen, J.C., Hatheway, C.L., Steigerwalt, A.G., and Brenner, D.J. |
Clostridium argentinense sp. nov.: a Genetically Homogeneous Group Composed of All Strains of Clostridium botulinum Toxin Type G and Some Nontoxigenic Strains Previously Identified as Clostridium subterminale or Clostridium hastiforme | International Journal of Systematic and Evolutionary Microbiology | 38(4), page(s): 375-381 | 10.1099/00207713-38-4-375 |
| Abrini1994 | summary, general characteristics, metabolites, utilisation | Clostridium autoethanogenum | 1994 |
Abrini, J., Naveau, H., and Nyns, E.J. |
Clostridium autoethanogenum, sp. nov., an anaerobic bacterium that produces ethanol from carbon monoxide. | Archives of Microbiology | 161, page(s): 345-351 | 10.1007/BF00303591 |
| Hahnke2014 | summary, general characteristics, enzymes, metabolites, utilisation | Clostridium bornimense | 2014 |
Hahnke S, Striesow J, Elvert M, Mollar XP, Klocke M. |
Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 8), page(s): 2792-2797 | 10.1099/ijs.0.059691-0 |
| Hahnke2014a | genetics, taxonomy | Clostridium bornimense | 2014 |
Hahnke S, Wibberg D, Tomazetto G, Pühler A, Klocke M, Schlüter A. |
Whole genome sequence of Clostridium bornimense strain M2/40 isolated from a lab-scale mesophilic two-phase biogas reactor digesting maize silage and wheat straw. | Journal of Biotechnology | 184, page(s): 199-200 | 10.1016/j.jbiotec.2014.05.026 |
| Sleat1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium cellulovorans | 1984 |
Sleat R, Mah RA, Robinson R. |
Isolation and Characterization of an Anaerobic, Cellulolytic Bacterium, Clostridium cellulovorans sp. nov. | Applied and Environmental Microbiology | 48(1), page(s): 88-93 | 10.1128/aem.48.1.88-93.1984 |
| Collins1992 | summary, general characteristics, acid from carbohydrates, metabolites, food contamination | Clostridium estertheticum | 1992 |
Collins MD, Rodrigues UM, Dainty RH, Edwards RA, Roberts TA. |
Taxonomic studies on a psychrophilic Clostridium from vacuum-packed beef: description of Clostridium estertheticum sp. nov. | FEMS Microbiology Letters | 75(2-3), page(s): 235-240 | 10.1016/0378-1097(92)90410-p |
| Spring2003 | summary, general characteristics, metabolites, utilisation | Clostridium estertheticum, Clostridium psychrophilum, Clostridium bowmanii, Clostridium frigoris, Clostridium lacusfryxellense | 2003 |
Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E. |
Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 4), page(s): 1019-1029 | 10.1099/ijs.0.02554-0 |
| Broda2000 | summary, general characteristics, acid from carbohydrates, metabolites, quirks, food spoilage | Clostridium gasigenes | 2000 |
Broda DM, Saul DJ, Lawson PA, Bell RG, Musgrave DR. |
Clostridium gasigenes sp. nov., a psychrophile causing spoilage of vacuum-packed meat. | International Journal of Systematic and Evolutionary Microbiology | 50(Pt 1), page(s): 107-118 | 10.1099/00207713-50-1-107 |
| Padden1999 | summary, general characteristics, acid from carbohydrates, metabolites, antibiotics, quirks | Clostridium isatidis | 1999 |
Padden AN, Dillon VM, Edmonds J, Collins MD, Alvarez N, John P. |
An indigo-reducing moderate thermophile from a woad vat, Clostridium isatidis sp. nov. | International Journal of Systematic Bacteriology | 49(Pt 3), page(s): 1025-1031 | 10.1099/00207713-49-3-1025 |
| Barker1942 | metabolites | Clostridium kluyverii | 1942 |
Barker HA, Taha SM. |
Clostridium kluyverii, an Organism Concerned in the Formation of Caproic Acid from Ethyl Alcohol. | Journal of Bacteriology | 43(3), page(s): 347-363 | 10.1128/jb.43.3.347-363.1942 |
| Cheawchanlertfa2020 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Clostridium manihotivorum | 2020 |
Cheawchanlertfa P, Sutheeworapong S, Jenjaroenpun P, Wongsurawat T, Nookaew I, Cheevadhanarak S, Kosugi A, Pason P, Waeonukul R, Ratanakhanokchai K, Tachaapaikoon C. |
Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes. | PeerJ | 8, page(s): e10343 | 10.7717/peerj.10343 |
| Meyer2007 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Clostridium metallolevans | 2007 |
Meyer J, Schmidt A, Michalke K, Hensel R. |
Volatilisation of metals and metalloids by the microbial population of an alluvial soil. | Systematic and Applied Microbiology | 30(3), page(s): 229-238 | 10.1016/j.syapm.2006.05.001 |
| Ellis2014 | summary, metabolites, food waste | Clostridium metallolevans | 2014 |
Ellis JT, Sims RC, Miller CD. |
Microbial bioproducts from cheese whey through fermentation with wastewater sludge Clostridium isolates. | Canadian Journal of Microbiology | 60(7), page(s): 431-435 | 10.1139/cjm-2013-0803 |
| Iyer2008 | summary, general characteristics, enzymes, metabolites, quirks | Clostridium taeniosporum | 2008 |
Iyer AV, Blinkova AL, Yang SY, Harrison M, Tepp WH, Jacobson MJ, Johnson EA, Bennett GN, Walker JR. |
Clostridium taeniosporum is a close relative of the Clostridium botulinum Group II. Anaerobe. | Anaerobe | 14(6), page(s): 318-324 | 10.1016/j.anaerobe.2008.11.004 |
| Liu2020b | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Clostridium thermarum | 2020 |
Lan Liu, Jian-Yu Jiao, Bao-Zhu Fang, Ai-Ping Lv, Yu-Zhen Ming, Meng-Meng Li, Nimaichand Salam, Wen-Jun Li |
Isolation of Clostridium from Yunnan-Tibet hot springs and description of Clostridium thermarum sp. nov. with lignocellulosic ethanol production | Systematic and Applied Microbiology | 43(5), page(s): 126104 | 10.1016/j.syapm.2020.126104 |
| Chang2002 | summary, general characteristics, enzymes, metabolites, utilisation | Comamonas koreensis | 2002 |
Chang YH, Han JI, Chun J, Lee KC, Rhee MS, Kim YB, Bae KS. |
Comamonas koreensis sp. nov., a non-motile species from wetland in Woopo, Korea. | International Journal of Systematic and Evolutionary Microbiology | 52(Pt 2), page(s): 377-381 | 10.1099/00207713-52-2-377 |
| Monciardini2003 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Conexibacter woesei | 2003 |
Monciardini P, Cavaletti L, Schumann P, Rohde M, Donadio S. |
Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 2), page(s): 569-576 | 10.1099/ijs.0.02400-0 |
| Sakamoto2021a | summary, general characteristics, enzymes, metabolites, utilisation | Coprobacter secundus subsp. similis, Solibaculum mannosilyticum | 2021 |
Sakamoto, M., Ikeyama, N., Toyoda, A., Murakami, T., Mori, H., Morohoshi, S., Kunihiro, T., Iino, T., and Ohkuma, M. |
Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces | Microbiology and Immunology | 65(6), page(s): 245-256 | 10.1111/1348-0421.12886 |
| Haas1988 | summary, general characteristics, acid from carbohydrates | Coriobacterium glomerans | 1988 |
Haas, F., and Konig, H. |
Coriobacterium glomerans gen. nov., sp. nov. from the Intestinal Tract of the Red Soldier Bug. | International Journal of Systematic and Evolutionary Microbiology | 38(4), page(s): 382-384 | 10.1099/00207713-38-4-382 |
| Collins1982a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Corynebacterium matruchotii | 1982 |
Matthew D. Collins |
Reclassification of Bacterionema matruchotii (Mendel) in the genus Corynebacterium, as Corynebacterium matruchotii comb. nov. | Zentralblatt für Bakteriologie Mikrobiologie und Hygiene: I | 3(3), page(s): 364-367 | 10.1016/S0721-9571(82)80016-1 |
| Li2021b | summary, general characteristics, metabolites, utilisation, quirks | Crassaminicella thermophila | 2021 |
Li, X.-G., Lin, J., Bai, S.-J., Dai, J., Jiao, Z.-X., Tang, H.-Z., Qi, X.-Q., Zhang, W.-J., Liu, M., Xu, J.-S., and Wu, L.-F. |
Crassaminicella thermophila sp. nov., a moderately thermophilic bacterium isolated from a deep-sea hydrothermal vent chimney and emended description of the genus Crassaminicella. | International Journal of Systematic and Evolutionary Microbiology | 71(11), | 10.1099/ijsem.0.005112 |
| Joseph2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation, water source, infection, food source | Cronobacter condimenti, Cronobacter universalis | 2012 |
Joseph S, Cetinkaya E, Drahovska H, Levican A, Figueras MJ, Forsythe SJ. |
Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients. | International Journal of Systematic and Evolutionary Microbiology | 62(Pt 6), page(s): 1277-1283 | 10.1099/ijs.0.032292-0 |
| Yassin2012 | summary, general characteristics, enzymes, metabolites, antibiotics, blood infection | Cruoricaptor ignavus | 2012 |
Yassin AF, Inglis TJ, Hupfer H, Siering C, Schumann P, Busse HJ, Aravena-Román M. |
Cruoricaptor ignavus gen. nov., sp. nov., a novel bacterium of the family Flavobacteriaceae isolated from blood culture of a man with bacteraemia. | Systematic and Applied Microbiology | 35(7), page(s): 421-426 | 10.1016/j.syapm.2012.08.003 |
| Holliger1998 | summary, general characteristics, utilisation, quirks | Dehalobacter restrictus | 1998 |
Holliger C, Hahn D, Harmsen H, Ludwig W, Schumacher W, Tindall B, Vazquez F, Weiss N, Zehnder AJ. |
Dehalobacter restrictus gen. nov. and sp. nov., a strictly anaerobic bacterium that reductively dechlorinates tetra- and trichloroethene in an anaerobic respiration. | Archives of Microbiology | 169(4), page(s): 313-321 | 10.1007/s002030050577 |
| Magli1996 | summary, general characteristics, metabolites, quirks | Dehalobacterium formicoaceticum | 1996 |
Magli, A., Wendt, M., and Leisinger, T. |
Isolation and characterization of Dehalobacterium formicoaceticum gen. nov. sp. nov., a strictly anaerobic bacterium utilizing dichloromethane as source of carbon and energy | Archives of Microbiology | 166(2), page(s): 101-108 | 10.1007/s002030050362 |
| Loffler2013 | summary, general characteristics, utilisation, quirks | Dehalococcoides mccartyi | 2013 |
Löffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Müller JA, Fullerton H, Zinder SH, Spormann AM. |
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. | International Journal of Systematic and Evolutionary Microbiology | 63(Pt 2), page(s): 625-635 | 10.1099/ijs.0.034926-0 |
| MaymoGatell1997 | summary, general characteristics, biotechnology, educational | Dehalococcoides mccartyi | 1997 |
Maymó-Gatell X, Chien Y, Gossett JM, Zinder SH. |
Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. | Science | 276(5318), page(s): 1568-1571 | 10.1126/science.276.5318.1568 |
| Brooks1981 | summary, general characteristics, enzymes, acid from carbohydrates, quirks | Deinococcus proteolyticus, Micrococcus radiodurans | 1981 |
Brooks, B.W., and Murray, R.G.E. |
Nomenclature for “Micrococcus radiodurans” and Other Radiation-Resistant Cocci: Deinococcaceae fam. nov. and Deinococcus gen. nov., Including Five Species | International Journal of Systematic and Evolutionary Microbiology | 31(3), | 10.1099/00207713-31-3-353 |
| DeWildeman2003 | summary, general characteristics, utilisation, quirks | Desulfitobacterium dichloroeliminans | 2003 |
De Wildeman S, Diekert G, Van Langenhove H, Verstraete W. |
Stereoselective microbial dehalorespiration with vicinal dichlorinated alkanes. | Applied and Environmental Microbiology | 69(9), page(s): 5643-5647 | 10.1128/AEM.69.9.5643-5647.2003 |
| Campbell1966 | summary, general characteristics, utilisation | Desulfovibrio Africans | 1966 |
Campbell LL, Kasprzycki MA, Postgate JR. |
Desulfovibrio Africans sp. n., a new dissimilatory sulfate-reducing bacterium. | Journal of Bacteriology | 92(4), page(s): 1122-1127 | 10.1128/jb.92.4.1122-1127.1966 |
| CastanedaCarrion2010 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Desulfovibrio africans | 2010 |
Castañeda-Carrión IN, Sheik CS, Krumholz LR. |
Desulfovibrio africanus subsp. uniflagellum subsp. nov., a sulfate-reducing bacterium from a uranium-contaminated subsurface aquifer. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 4), page(s): 880-886 | 10.1099/ijs.0.006668-0 |
| Spring2019 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Desulfocurvibacter africanus | 2019 |
Spring S, Sorokin DY, Verbarg S, Rohde M, Woyke T, Kyrpides NC. |
Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat. | Frontiers in Microbiology | 10, page(s): 862 | 10.3389/fmicb.2019.00862 |
| Widdel1977 | summary, general characteristics, metabolites, utilisation, quirks | Desulfofarcimen acetoxidans | 1977 |
Widdel F, Pfennig N. |
A new anaerobic, sporing, acetate-oxidizing, sulfate-reducing bacterium, Desulfotomaculum (emend.) acetoxidans. | Archives of Microbiology | 112(1), page(s): 119-122 | 10.1007/BF00446665 |
| Watanabe2018 | genetics, taxonomy | Desulfofarcimen acetoxidans, Desulfoscipio gibsoniae | 2018 |
Watanabe, M., Kojima, H., and Fukui, M. |
Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov. and Desulfohalotomaculum gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 68(9), | 10.1099/ijsem.0.002915 |
| Langendijk2001 | summary, general characteristics, metabolites, utilisation, oral cavity | Desulfomicrobium orale | 2001 |
Langendijk PS, Kulik EM, Sandmeier H, Meyer J, van der Hoeven JS. |
Isolation of Desulfomicrobium orale sp. nov. and Desulfovibrio strain NY682, oral sulfate-reducing bacteria involved in human periodontal disease. | International Journal of Systematic and Evolutionary Microbiology | 51(Pt 3), page(s): 1035-1044 | 10.1099/00207713-51-3-1035 |
| Lee2009a | summary, general characteristics, metabolites, utilisation, quirks | Desulfosporosinus youngiae | 2009 |
Lee YJ, Romanek CS, Wiegel J. |
Desulfosporosinus youngiae sp. nov., a spore-forming, sulfate-reducing bacterium isolated from a constructed wetland treating acid mine drainage. | International Journal of Systematic and Evolutionary Microbiology | 59(Pt 11), page(s): 2743-2746 | 10.1099/ijs.0.007336-0 |
| Tebo1998 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Desulforamulus reducens | 1998 |
Tebo, B.M., and Obraztsova, A. |
Sulfate-reducing bacterium grows with Cr(VI), U(VI), Mn(IV), and Fe(III) as electron acceptors | FEMS Microbiology Letters | 162(1), page(s): 193-198 | 10.1111/j.1574-6968.1998.tb12998.x |
| Watanabe2020 | summary, general characteristics, utilisation | Desulfotomaculum reducens, Desulfotomaculum ruminis | 2020 |
Watanabe M, Fukui M, Kuever J. |
Desulforamulus gen. nov. | Bergey's Manual of Systematics of Archaea and Bacteria: 1-8 | 10.1002/9781118960608.gbm01770 | |
| Legall1963 | summary, general characteristics, metabolites, utilisation | Megalodesulfovibrio gigas | 1963 |
Legall, J. |
A new species of Desulfovibrio. | Journal of Bacteriology | 86(5), page(s): 1120 | 10.1128/JB.86.5.1120-1120.1963 |
| Galushko2020 | summary, general characteristics, metabolites, utilisation | Oceanidesulfovibrio marinus | 2020 |
Galushko, A., and Kuever, J. |
Oceanidesulfovibrio gen. nov. | Bergey's Manual of Systematics of Archaea and Bacteria. | page(s): 1-5 | 10.1002/9781118960608.gbm01894 |
| BenDhiaThabet2007 | summary, general characteristics, enzymes, metabolites, utilisation | Desulfovibrio marinus | 2007 |
Ben Dhia Thabet O, Fardeau ML, Suarez-Nuñez C, Hamdi M, Thomas P, Ollivier B, Alazard D. |
Desulfovibrio marinus sp. nov., a moderately halophilic sulfate-reducing bacterium isolated from marine sediments in Tunisia. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 9), page(s): 2167-2170 | 10.1099/ijs.0.64790-0 |
| LeHaridon1998 | summary, general characteristics, utilisation, quirks | Desulfurobacterium thermolithotrophum | 1998 |
L'Haridon S, Cilia V, Messner P, Ragúenès G, Gambacorta A, Sleytr UB, Prieur D, Jeanthon C. |
Desulfurobacterium thermolithotrophum gen. nov., sp. nov., a novel autotrophic, sulphur-reducing bacterium isolated from a deep-sea hydrothermal vent. | International Journal of Systematic Bacteriology | 48(Pt 3), page(s): 701-711 | 10.1099/00207713-48-3-701 |
| Afouda2020a | summary, general characteristics, enzymes, metabolites, utilisation | Dialister massiliensis | 2020 |
Afouda P, Dubourg G, Tomeï E, Raoult D, Fournier PE. |
Dialister massiliensis sp. nov., a new bacterium isolated from the human gut. | New Microbes New Infections | 34, page(s): 100657 | 10.1016/j.nmni.2020.100657 |
| Aguirre1993 | summary, general characteristics, enzymes, acid from carbohydrates | Dolosigranulum pigrum | 1993 |
Aguirre M, Morrison D, Cookson BD, Gay FW, Collins MD. |
Phenotypic and phylogenetic characterization of some Gemella-like organisms from human infections: description of Dolosigranulum pigrum gen. nov., sp. nov. | Journal of Applied Bacteriology | 76(6), page(s): 608-612 | 10.1111/j.1365-2672.1993.tb01602.x |
| Miyake2020 | summary, general characteristics, enzymes, metabolites | Duncaniella dubosii, Duncaniella freteri, Duncaniella muris | 2020 |
Miyake S, Ding Y, Soh M, Low A, Seedorf H. |
Cultivation and description of Duncaniella dubosii sp. nov., Duncaniella freteri sp. nov. and emended description of the species Duncaniella muris | International Journal of Systematic and Evolutionary Microbiology | 70(5), | 10.1099/ijsem.0.004137 |
| Ge2021a | summary, general characteristics | Enorma shizhengliae, Eggerthella guodeyinii | 2021 |
Ge, Y., Yang, J., Lai, X.-H., Jin, D., Lu, S., Zhang, G., Huang, Y., Luo, X., Zheng, H., Tao, Y., Yuan, T., Li, L., Zhang, X., and Xu, J. |
Enorma shizhengliae sp. nov. and Eggerthella guodeyinii sp. nov., two new members of the family Coriobacteriaceae | International Journal of Systematic and Evolutionary Microbiology | 71(7), page(s): 004840 | 10.1099/ijsem.0.004840 |
| Harada2016 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, food contamination | Enterococcus saigonensis | 2016 |
Harada T, Dang VC, Nguyen DP, Nguyen TAD, Sakamoto M, Ohkuma M, Motooka D, Nakamura S, Uchida K, Jinnai M, Yonogi S, Kawahara R, Kanki M, Kawai T, Kumeda Y, Yamamoto Y. |
Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 3779-3785 | 10.1099/ijsem.0.001264 |
| Tegtmeier2018 | summary, general characteristics, metabolites, utilisation, quirks | Ereboglobus luteus | 2018 |
Tegtmeier D, Belitz A, Radek R, Heimerl T, Brune A. |
Ereboglobus luteus gen. nov. sp. nov. from cockroach guts, and new insights into the oxygen relationship of the genera Opitutus and Didymococcus (Verrucomicrobia: Opitutaceae). | Systematic and Applied Microbiology | 41(2), page(s): 101-112 | 10.1016/j.syapm.2017.10.005 |
| Liu2015a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Escherichia marmotae | 2015 |
Liu S, Jin D, Lan R, Wang Y, Meng Q, Dai H, Lu S, Hu S, Xu J. |
Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana. | International Journal of Systematic and Evolutionary Microbiology | 65(7), page(s): 2130-2134 | 10.1099/ijs.0.000228 |
| Diop2016b | summary, general characteristics, enzymes, female genital tract | Ezakiella massiliensis | 2016 |
Diop K, Raoult D, Bretelle F, Fenollar F. |
"Ezakiella massiliensis" sp. nov., a new bacterial species isolated from human female genital tract. | New Microbes New Infections | 15, page(s): 16-17 | 10.1016/j.nmni.2016.09.011 |
| Chang2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Faecalibaculum rodentium | 2015 |
Chang DH, Rhee MS, Ahn S, Bang BH, Oh JE, Lee HK, Kim BC. |
Faecalibaculum rodentium gen. nov., sp. nov., isolated from the faeces of a laboratory mouse. | Antonie Van Leeuwenhoek | 108(6), page(s): 1309-1318 | 10.1007/s10482-015-0583-3 |
| Hungate1950 | summary, general characteristics, acid from carbohydrates, utilisation | Fibrobacter succinogenes | 1950 |
Hungate, RE. |
The anaerobic mesophilic cellulolytic bacteria. | Bacteriology Reviews | 14(1), page(s): 1-49 | 10.1128/br.14.1.1-49.1950 |
| Montgomery1988 | summary, general characteristics, acid from carbohydrates, utilisation | Fibrobacter succinogenes, Fibrobacter intestinalis | 1988 |
Montgomery, L., Flesher, B., and Stahl, D. |
Transfer of Bacteroides succinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter succinogenes comb. nov. and Description of Fibrobacter intestinalis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 38(4), | 10.1099/00207713-38-4-430 |
| Park2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, oral cavity | Fusobacterium pseudoperiodonticum | 2019 |
Park, S.-N., Lim, Y.K., Shin, J.H., Kim, H.-S., Jo, E., Lee, W.-P., Shin, Y., Paek, J., Chang, Y.-H., Kim, H., and Kook, J.-K. |
Fusobacterium pseudoperiodonticum sp. nov., isolated from the human oral cavity. | Current Microbiology | 76(6), page(s): 659-665 | 10.1007/s00284-019-01675-y |
| Zeng2021 | summary, general characteristics, metabolites, antibiotics, utilisation, quirks | Gemmatimonas groenlandica | 2021 |
Zeng Y, Nupur, Wu N, Madsen AM, Chen X, Gardiner AT, Koblížek M. |
Gemmatimonas groenlandica sp. nov. Is an Aerobic Anoxygenic Phototroph in the Phylum Gemmatimonadetes. | Frontiers in Microbiology | 11, page(s): 606612 | 10.3389/fmicb.2020.606612 |
| Hong2015a | summary, general characteristics, utilisation, quirks | Geosporobacter ferrireducens | 2015 |
Hong H, Kim SJ, Min UG, Lee YJ, Kim SG, Jung MY, Seo YS, Rhee SK. |
Geosporobacter ferrireducens sp. nov., an anaerobic iron-reducing bacterium isolated from an oil-contaminated site. | Antonie Van Leeuwenhoek | 107(4), page(s): 971-977 | 10.1007/s10482-015-0389-3 |
| Poehlein2017 | summary, general characteristics, metabolites | Gottschalkia acidurici, Gottschalkia purinilytica, Eubacterium angustum | 2017 |
Poehlein A, Yutin N, Daniel R, Galperin MY. |
Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov. | International Journal of Systematic and Evolutionary Microbiology | 67(8), page(s): 2711-2719 | 10.1099/ijsem.0.002008 |
| Oren1984 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Halobacteroides halobius | 1984 |
Aharon Oren, William G. Weisburg, Martin Kessel, Carl R. Woese |
Halobacteroides halobius gen. nov., sp. nov., a Moderately Halophic Anaerobic Bacterium from the Bottom Sediments of the Dead Sea | Systematic and Applied Microbiology | 5(1), page(s): 58-70 | 10.1016/S0723-2020(84)80051-X |
| Kimble1995 | summary, general characteristics, metabolites, utilisation, quirks | Heliobacterium modesticaldum | 1995 |
Kimble, L.K., Mandelco, L., Woese, C.R., and Madigan, M.T. |
Heliobacterium modesticaldum, sp. nov., a thermophilic heliobacterium of hot springs and volcanic soils. | Archives of Microbiology | 163, page(s): 259-267 | 10.1007/BF00393378 |
| Kyndt2021 | genetics, taxonomy | Heliomicrobium chlorum, Heliomicrobium gestii, Heliomicrobium mobilis, Heliomicrobium modesticaldum, Heliomicrobium undosum | 2021 |
Kyndt, J.A., Montano Salama, D., Meyer, T.E., and Imhoff, J.F. |
Phylogenetic relationship of phototrophic heliobacteria and systematic reconsideration of species and genus assignments based on genome sequences of eight species. | International Journal of Systematic and Evolutionary Microbiology | 71(4), page(s): 004729 | 10.1099/ijsem.0.004729 |
| Koeck2016a | summary, general characteristics, metabolites, utilisation, quirks | Herbinix luporum | 2016 |
Koeck DE, Hahnke S, Zverlov VV. |
Herbinix luporum sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 4132-4137 | 10.1099/ijsem.0.001324 |
| Angen2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Histophilus somni, Haemophilus somnus, Haemophilus agni, Histophilus ovis | 2003 |
Angen Ø, Ahrens P, Kuhnert P, Christensen H, Mutters R. |
Proposal of Histophilus somni gen. nov., sp. nov. for the three species incertae sedis 'Haemophilus somnus', 'Haemophilus agni' and 'Histophilus ovis'. | International Journal of Systematic and Evolutionary Microbiology | 53(Pt 5), page(s): 1449-1456 | 10.1099/ijs.0.02637-0 |
| Dedysh2021 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Humisphaera borealis | 2021 |
Dedysh, S.N., Beletsky, A.V., Ivanova, A.A., Kulichevskaya, I.S., Suzina, N.E., Philippov, D.A., Rakitin, A.L., Mardanov, A.V., and Ravin, N.V. |
Wide distribution of Phycisphaera-like planctomycetes from WD2101 soil group in peatlands and genome analysis of the first cultivated representative | Environmental Microbiology | 23(3), page(s): 1510-1526 | 10.1111/1462-2920.15360 |
| Maeng2020 | summary, general characteristics, enzymes, metabolites, quirks | Hymenobacter russus, Spirosoma aureum | 2020 |
Maeng, S., Park, Y., Han, J.H., Lee, S.E., Zhang, J., Kim, M.-K., Cha, I.-T., Lee, K.-e., Lee, B.-H., and Kim, M.K. |
Spirosoma aureum sp. nov., and Hymenobacter russus sp. nov., radiation-resistant bacteria in Cytophagales order isolated from soil. | Antonie Van Leeuwenhoek | 113(12), page(s): 2201-2212 | 10.1007/s10482-020-01492-5 |
| Kim2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Intestinibaculum porci | 2019 |
Kim, J.-S., Choe, H., Lee, Y.-R., Kim, K.M., and Park, D.-S. |
Intestinibaculum porci gen. nov., sp. nov., a new member of the family Erysipelotrichaceae isolated from the small intestine of a swine. | Journal of Microbiology | 57(5), page(s): 381-387 | 10.1007/s12275-019-8631-8 |
| Zamora2017 | summary, general characteristics, enzymes, acid from carbohydrates | Jeotgalibaca arthritidis, Jeotgalibaca porci | 2017 |
Zamora L, Pérez-Sancho M, Domínguez L, Fernández-Garayzábal JF, Vela AI. |
Jeotgalibaca porci sp. nov. and Jeotgalibaca arthritidis sp. nov., isolated from pigs, and emended description of the genus Jeotgalibaca. | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1473-1477 | 10.1099/ijsem.0.001741 |
| JumasBilak2007a | summary, general characteristics, enzymes, metabolites, quirks | Jonquetella anthropi | 2007 |
Jumas-Bilak E, Carlier JP, Jean-Pierre H, Citron D, Bernard K, Damay A, Gay B, Teyssier C, Campos J, Marchandin H. |
Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man. | International Journal of Systematic and Evolutionary Microbiology | 57(Pt 12), page(s): 2743-2748 | 10.1099/ijs.0.65213-0 |
| Spring2016 | summary, general characteristics, metabolites, antibiotics, utilisation, quirks | Kiritimatiella glycovorans | 2016 |
Spring S, Bunk B, Spröer C, Schumann P, Rohde M, Tindall BJ, Klenk HP. |
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. | The ISME Journal | 10(12), page(s): 2801-2816 | 10.1038/ismej.2016.84 |
| Passet2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Klebsiella grimontii | 2018 |
Passet V, Brisse S. |
Description of Klebsiella grimontii sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 68(1), page(s): 377-381 | 10.1099/ijsem.0.002517 |
| Yamamoto2014 | summary, general characteristics, enzymes, metabolites, antibiotics, quirks | Vulgatibacter incomptus, Labilithrix luteola | 2014 |
Yamamoto E, Muramatsu H, Nagai K. |
Vulgatibacter incomptus gen. nov., sp. nov. and Labilithrix luteola gen. nov., sp. nov., two myxobacteria isolated from soil in Yakushima Island, and the description of Vulgatibacteraceae fam. nov., Labilitrichaceae fam. nov. and Anaeromyxobacteraceae fam. nov. | International Journal of Systematic and Evolutionary Microbiology | 64(Pt 10), page(s): 3360-3368 | 10.1099/ijs.0.063198-0 |
| Rast2017 | summary, general characteristics, enzymes, utilisation | Lacunisphaera limnophila | 2017 |
Rast, P., Glockner, I., Boedeker, C., Jeske, O., Wiegand, S., Reinhardt, R., Schumann, P., Rohde, M., Spring, S., Glockner, F.O., Jogler, C., and Jogler, M. |
Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. | Frontiers in Microbiology | 8, page(s): 202 | 10.3389/fmicb.2017.00202 |
| McOrist1995 | summary, metabolites, quirks | Lawsonia intracellularis | 1995 |
McOrist S, Gebhart CJ, Boid R, Barns SM. |
Characterization of Lawsonia intracellularis gen. nov., sp. nov., the obligately intracellular bacterium of porcine proliferative enteropathy. | International Journal of Systematic Bacteriology | 45(4), page(s): 820-825 | 10.1099/00207713-45-4-820 |
| Eribe2004 | summary, general characteristics, enzymes, metabolites | Leptotrichia goodfellowii, Leptotrichia hofstadii, Leptotrichia shahii, Leptotrichia wadei | 2004 |
Eribe ERK, Paster BJ, Caugant DA, Dewhirst FE, Stromberg VK, Lacy GH, Olsen I. |
Genetic diversity of Leptotrichia and description of Leptotrichia goodfellowii sp. nov., Leptotrichia hofstadii sp. nov., Leptotrichia shahii sp. nov. and Leptotrichia wadei sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 2), page(s): 583-592 | 10.1099/ijs.0.02819-0 |
| Watanabe2015 | summary, general characteristics, utilisation | Limnochorda pilosa | 2015 |
Watanabe M, Kojima H, Fukui M. |
Limnochorda pilosa gen. nov., sp. nov., a moderately thermophilic, facultatively anaerobic, pleomorphic bacterium and proposal of Limnochordaceae fam. nov., Limnochordales ord. nov. and Limnochordia classis nov. in the phylum Firmicutes. | International Journal of Systematic and Evolutionary Microbiology | 65(8), page(s): 2378-2384 | 10.1099/ijs.0.000267 |
| Watanabe2016 | genetics | Limnochorda pilosa | 2016 |
Watanabe M, Kojima H, Fukui M. |
Complete genome sequence and cell structure of Limnochorda pilosa, a Gram-negative spore-former within the phylum Firmicutes. | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1330-1339 | 10.1099/ijsem.0.000881 |
| Salinas2004 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Mahella australiensis | 2004 |
Bonilla Salinas M, Fardeau ML, Thomas P, Cayol JL, Patel BKC, Ollivier B. |
Mahella australiensis gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from an Australian oil well. | International Journal of Systematic and Evolutionary Microbiology | 54(Pt 6), page(s): 2169-2173 | 10.1099/ijs.0.02926-0 |
| Liu2018b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Mameliella alba | 2018 |
Liu Y, Zhang X, Lai Q, Shao Z. |
Reclassification of Mameliella phaeodactyli, Mameliella atlantica, Ponticoccus lacteus and Alkalimicrobium pacificum as later heterotypic synonyms of Mameliella alba and an emended description of Mameliella alba. | International Journal of Systematic and Evolutionary Microbiology | 68(4), page(s): 1047-1051 | 10.1099/ijsem.0.002617 |
| Zheng2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Mameliella alba | 2010 |
Zheng Q, Chen C, Yan XJ, Wang YN, Zeng YH, Hao LK, He WH, Jiao NZ. |
Mameliella alba gen. nov., sp. nov., a marine bacterium of the Roseobacter clade in the order Rhodobacterales. | International Journal of Systematic and Evolutionary Microbiology | 60(Pt 4), page(s): 953-957 | 10.1099/ijs.0.011437-0 |
| Tall2020b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Massilistercora timonensis | 2020 |
Tall ML, Ndongo S, Ngom II, Delerce J, Khelaifia S, Raoult D, Fournier PE, Levasseur A. |
Massilistercora timonensis gen. nov., sp. nov., a new bacterium isolated from the human microbiota. | New Microbes New Infections | 35, page(s): 100664 | 10.1016/j.nmni.2020.100664 |
| Maki2018 | summary, general characteristics, antibiotics, utilisation, butyrate | Megasphaera stantonii | 2018 |
Maki JJ, Looft T. |
Megasphaera stantonii sp. nov., a butyrate-producing bacterium isolated from the cecum of a healthy chicken. | International Journal of Systematic and Evolutionary Microbiology | 68(11), page(s): 3409-3415 | 10.1099/ijsem.0.002991 |
| Amano2018 | summary, general characteristics, metabolites, utilisation, quirks | Methylomusa anaerophila | 2018 |
Amano N, Yamamuro A, Miyahara M, Kouzuma A, Abe T, Watanabe K. |
Methylomusa anaerophila gen. nov., sp. nov., an anaerobic methanol-utilizing bacterium isolated from a microbial fuel cell. | International Journal of Systematic and Evolutionary Microbiology | 68(4), page(s): 1118-1122 | 10.1099/ijsem.0.002635 |
| Slobodkin1997 | summary, general characteristics, metabolites, antibiotics, utilisation, quirks | Moorella glycerini | 1997 |
Slobodkin A, Reysenbach AL, Mayer F, Wiegel J. |
Isolation and characterization of the homoacetogenic thermophilic bacterium Moorella glycerini sp. nov. | International Journal of Systematic Bacteriology | 47(4), page(s): 969-974 | 10.1099/00207713-47-4-969 |
| Diop2017a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, female genital tract | Murdochiella vaginalis | 2018 |
Diop K, Diop A, Khelaifia S, Robert C, Pinto FD, Delerce J, Raoult D, Fournier PE, Bretelle F, Fenollar F. |
Characterization of a novel Gram-stain-positive anaerobic coccus isolated from the female genital tract: Genome sequence and description of Murdochiella vaginalis sp. nov. | Microbiologyopen | 7(3), page(s): e00570 | 10.1002/mbo3.570 |
| Diop2016c | health, vaginosis | Murdochiella vaginalis | 2016 |
Khoudia Diop, Didier Raoult, Florence Bretelle, Florence Fenollar |
'Murdochiella vaginalis' sp. nov., a new bacterial species cultivated from the vaginal flora of a woman with bacterial vaginosis. | Human Microbiome Journal | 2, page(s): 15-16 | 10.1016/j.humic.2016.11.002. |
| Miyake2020a | summary, general characteristics, enzymes, acid from carbohydrates | Muribaculum gordoncarteri | 2020 |
Miyake, S., Ding, Y., Soh, M., Low, A., and Seedorf, H. |
Muribaculum gordoncarteri sp. nov., an anaerobic bacterium from the faeces of C57BL/6J mice | International Journal of Systematic and Evolutionary Microbiology | 70(8), page(s): 4725-4729 | 10.1099/ijsem.0.004338 |
| Domenech1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Mycobacterium mageritense | 1997 |
Domenech P, Jimenez MS, Menendez MC, Bull TJ, Samper S, Manrique A, Garcia MJ. |
Mycobacterium mageritense sp. nov. | International Journal of Systematic Bacteriology | 47(2), page(s): 535-540 | 10.1099/00207713-47-2-535 |
| Bradbury1988 | summary, general characteristics, antibiotics, utilisation | Mycoplasma anseris | 1988 |
Bradbury, J.M., Jordan, F.T.W., Shimizu, T., Stipkovits, L., and Varga, Z. |
Mycoplasma anseris sp. nov. Found in Geese | International Journal of Systematic and Evolutionary Microbiology | 38(1), page(s): 74-76 | 10.1099/00207713-38-1-74 |
| Barile1968 | summary, general characteristics, quirks | Mycoplasma arginini | 1968 |
Barile MF, DelGiudice RA, Carski TR, Gibbs CJ, Morris JA. |
Isolation and characterization of Mycoplasma arginini: spec. nov. | Experimental Biology and Medicine | 129(2), page(s): 489-494 | 10.3181/00379727-129-33351 |
| Jasper1981 | summary, quirks | Mycoplasma californicum | 1981 |
Jasper, D.E., Eeno, H., Dellinger, J.D., and Christiansen, C. |
Mycoplasma californicum, a New Species from Cows | International Journal of Systematic and Evolutionary Microbiology | 31(3), | 10.1099/00207713-31-3-339 |
| Xu1999 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Natronorubrum bangense, Natronorubrum tibetense | 1999 |
Xu Y, Zhou P, Tian X. |
Characterization of two novel haloalkaliphilic archaea Natronorubrum bangense gen. nov., sp. nov. and Natronorubrum tibetense gen. nov., sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(Pt 1), page(s): 261-266 | 10.1099/00207713-49-1-261 |
| Brahimi2016 | health, kidney transplant, summary, general characteristics, urinary tract infection, clinical sources | Ndongobacter massiliensis | 2016 |
Brahimi S, Cadoret F, Fournier PE, Moal V, Raoult D. |
'Ndongobacter massiliensis' gen. nov., sp. nov., a new bacterial genus isolated from a human urine sample after de novo kidney transplantation. | New Microbes New Infections | 16, page(s): 34-36 | 10.1016/j.nmni.2016.12.018 |
| Yang2019 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation | Nocardia mangyaensis | 2019 |
Yang, R.-Q., Zhang, B.-L., Sun, H.-L., Zhang, G.-S., Li, S.-W., Liu, G.-X., Chen, T., Li, Y.-S., Wu, Y.-N., An, L.-Z., Zhang, W., and Wu, X.-K. |
Nocardia mangyaensis sp. nov., a novel actinomycete isolated from crude-oil-contaminated soil. | International Journal of Systematic and Evolutionary Microbiology | 59(2), page(s): 397-403 | 10.1099/ijsem.0.003159 |
| Yoon2005d | summary, general characteristics, enzymes, utilisation, quirks | Nocardioides kribbensis | 2005 |
Yoon JH, Kim IG, Lee MH, Oh TK. |
Nocardioides kribbensis sp. nov., isolated from an alkaline soil. | International Journal of Systematic and Evolutionary Microbiology | 55(4), page(s): 1611-1614 | 10.1099/ijs.0.63631-0 |
| Miroshnichenko2003 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Oceanithermus profundus | 2003 |
Miroshnichenko ML, L'Haridon S, Jeanthon C, Antipov AN, Kostrikina NA, Tindall BJ, Schumann P, Spring S, Stackebrandt E, Bonch-Osmolovskaya EA. |
Oceanithermus profundus gen. nov., sp. nov., a thermophilic, microaerophilic, facultatively chemolithoheterotrophic bacterium from a deep-sea hydrothermal vent. | International Journal of Systematic and Evolutionary Microbiology | 53(3), page(s): 747-752 | 10.1099/ijs.0.02367-0 |
| Choi2008 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, quirks | Paenibacillus donghaensis | 2008 |
Choi JH, Im WT, Yoo JS, Lee SM, Moon DS, Kim HJ, Rhee SK, Roh DH. |
Paenibacillus donghaensis sp. nov., a xylan-degrading and nitrogen-fixing bacterium isolated from East Sea sediment. | Journal of Microbiology and Biotechnology | 18(2), page(s): 189-193 | 18309260 PMID |
| Hu2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus mucilaginosus, Paenibacillus edaphicus | 2010 |
Hu XF, Li SX, Wu JG, Wang JF, Fang QL, Chen JS. |
Transfer of Bacillus mucilaginosus and Bacillus edaphicus to the genus Paenibacillus as Paenibacillus mucilaginosus comb. nov. and Paenibacillus edaphicus comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 60(1), page(s): 8-14 | 10.1099/ijs.0.008532-0 |
| Beneduzi2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paenibacillus riograndensis | 2010 |
Beneduzi A, Costa PB, Parma M, Melo IS, Bodanese-Zanettini MH, Passaglia LMP. |
Paenibacillus riograndensis sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Triticum aestivum. | International Journal of Systematic and Evolutionary Microbiology | 60(1), page(s): 128-133 | 10.1099/ijs.0.011973-0 |
| Ueki2006 | summary, general characteristics, metabolites, utilisation, quirks | Paludibacter propionicigenes | 2006 |
Ueki A, Akasaka H, Suzuki D, Ueki K. |
Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. | International Journal of Systematic and Evolutionary Microbiology | 56(1), page(s): 39-44 | 10.1099/ijs.0.63896-0 |
| Kulichevskaya2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Paludibaculum fermentans | 2014 |
Kulichevskaya IS, Suzina NE, Rijpstra WIC, Damsté JSS, Dedysh SN. |
Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 of the Acidobacteria. | International Journal of Systematic and Evolutionary Microbiology | 64(8), page(s): 2857-2864 | 10.1099/ijs.0.066175-0 |
| Zhao2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks | Emcibacter congregatus | 2018 |
Zhao Z, Shen X, Chen W, Yu XY, Fu GY, Sun C, Wu M. |
Emcibacter congregatus sp. nov., isolated from sediment cultured in situ. | International Journal of Systematic and Evolutionary Microbiology | 68(9), page(s): 2846-2850 | 10.1099/ijsem.0.002906 |
| Park2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, quirks | Paremcibacter congregatus | 2020 |
Park, M.-J., Namirimu, T., Yang, S.H., and Kwon, K.K. |
Description of Luteithermobacter gelatinilyticus gen. nov., sp. nov., and Paremcibacter congregatus gen. nov., comb. nov. via reclassification of the genus Emcibacter. | International Journal of Systematic and Evolutionary Microbiology | 70(8), page(s): 4691-4697 | 10.1099/ijsem.0.004334 |
| Woo2003 | summary, general characteristics, enzymes | Actinomyces hongkongensis | 2003 |
Woo PC, Fung AM, Lau SK, Teng JL, Wong BH, Wong MK, Hon E, Tang GW, Yuen KY. |
Actinomyces hongkongensis sp. nov. a novel Actinomyces species isolated from a patient with pelvic actinomycosis. | Systematic and Applied Microbiology | 26(4), page(s): 518-522 | 10.1078/072320203770865819 |
| Margesin2003 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Pedobacter cryoconitis | 2003 |
Margesin R, Spröer C, Schumann P, Schinner F. |
Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite. | International Journal of Systematic and Evolutionary Microbiology | 53(5), page(s): 1291-1296 | 10.1099/ijs.0.02436-0 |
| Galperin2016 | summary, general characteristics, metabolites, utilisation, quirks | Peptoclostridium litorale, Peptoclostridium acidaminophilum | 2016 |
Galperin MY, Brover V, Tolstoy I, Yutin N. |
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(12), page(s): 5506-5513 | 10.1099/ijsem.0.001548 |
| Zindel1988 | summary, general characteristics, metabolites, utilisation, quirks | Eubacterium acidaminophilum | 1988 |
Zindel, U., Freundenberg, W., Rieth, M., Andreesen, J.R., Schnell, J., and Widdel, F. |
Eubacterium acidaminophilum sp. nov., a versatile amino acid-degrading anaerobe producing or utilizing H2 or formate. | Archives of Microbiology | 150, page(s): 254-266 | 10.1007/BF00407789 |
| Quemeneur2019 | summary, general characteristics, metabolites, utilisation | Petrocella atlantisensis | 2019 |
Quéméneur M, Erauso G, Frouin E, Zeghal E, Vandecasteele C, Ollivier B, Tamburini C, Garel M, Ménez B, Postec A. |
Hydrostatic Pressure Helps to Cultivate an Original Anaerobic Bacterium From the Atlantis Massif Subseafloor (IODP Expedition 357): Petrocella atlantisensis gen. nov. sp. nov. | Frontiers in Microbiology | 16(10), page(s): 1497 | 10.3389/fmicb.2019.01497 |
| Kanso2004 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Phenylobacterium lituiforme | 2004 |
Kanso S, Patel BKC. |
Phenylobacterium lituiforme sp. nov., a moderately thermophilic bacterium from a subsurface aquifer, and emended description of the genus Phenylobacterium. | International Journal of Systematic and Evolutionary Microbiology | 54(6), page(s): 2141-2146 | 10.1099/ijs.0.63138-0 |
| Hirasawa1994 | summary, general characteristics, enzymes, metabolites, utilisation | Porphyromonas gingivicanis, Porphyromonas crevioricanis | 1994 |
Hirasawa M, Takada K. |
Porphyromonas gingivicanis sp. nov. and Porphyromonas crevioricanis sp. nov., isolated from beagles. | International Journal of Systematic and Evolutionary Microbiology | 44(4), page(s): 637-640 | 10.1099/00207713-44-4-637 |
| Sakamoto2013 | summary, general characteristics, enzymes, metabolites, utilisation | Porphyromonas crevioricanis | 2013 |
Sakamoto M, Ohkuma M. |
Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority. | International Journal of Systematic and Evolutionary Microbiology | 63(2), page(s): 454-457 | 10.1099/ijs.0.042531-0 |
| Downes2011a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, oral cavity | Prevotella fusca, Prevotella scopos | 2011 |
Downes J, Wade WG. |
Prevotella fusca sp. nov. and Prevotella scopos sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 61(4), page(s): 854-858 | 10.1099/ijs.0.023861-0 |
| Ueki2022 | summary, general characteristics, acid from carbohydrates, utilisation | Prevotella herbatica | 2022 |
Ueki, A., Tonouchi, A., Kaku, N., and Ueki, K. |
Prevotella herbatica sp. nov., a plant polysaccharide-decomposing anaerobic bacterium isolated from a methanogenic reactor. | International Journal of Systematic and Evolutionary Microbiology | 72(1), page(s): 005221 | 10.1099/ijsem.0.005221 |
| Cao2016 | summary, general characteristics, utilisation | Pseudodesulfovibrio indicus, Pseudodesulfovibrio aespoeensis | 2016 |
Cao J, Gayet N, Zeng X, Shao Z, Jebbar M, Alain K. |
Pseudodesulfovibrio indicus gen. nov., sp. nov., a piezophilic sulfate-reducing bacterium from the Indian Ocean and reclassification of four species of the genus Desulfovibrio. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 3904-3911 | 10.1099/ijsem.0.001286 |
| Motamedi1998 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Desulfovibrio aespoeensis | 1998 |
Motamedi M, Pedersen K. |
Desulfovibrio aespoeensis sp. nov., a mesophilic sulfate-reducing bacterium from deep groundwater at Aspö hard rock laboratory, Sweden. | International Journal of Systematic Bacteriology | 48(1), page(s): 311-315 | 10.1099/00207713-48-1-311 |
| Rudra2021 | genetics, taxonomy | Halopseudomonas pelagia | 2021 |
Rudra B, Gupta RS. |
Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera. | International Journal of Systematic and Evolutionary Microbiology | 71(9), | 10.1099/ijsem.0.005011 |
| Hwang2009 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, quirks | Pseudomonas pelagia | 2009 |
Hwang CY, Zhang GI, Kang SH, Kim HJ, Cho BC. |
Pseudomonas pelagia sp. nov., isolated from a culture of the Antarctic green alga Pyramimonas gelidicola. | International Journal of Systematic and Evolutionary Microbiology | 59(12), page(s): 3019-3024 | 0.1099/ijs.0.008102-0 |
| SaatiSantamaria2021 | genetics, taxonomy | Halopseudomonas pelagia | 2021 |
Saati-Santamaría Z, Peral-Aranega E, Velázquez E, Rivas R, García-Fraile P. |
Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera. | Biology | 10(8), page(s): 782 | 10.3390/biology10080782 |
| Uchino2000 | summary, general characteristics, enzymes, metabolites, utilisation, quirks | Pseudomonas straminea | 2000 |
Uchino M, Kosako Y, Uchimura T, Komagata K. |
Emendation of Pseudomonas straminea Iizuka and Komagata 1963. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1513-1519 | 10.1099/00207713-50-4-1513 |
| Iizuka1963 | summary, general characteristics, enzymes, metabolites, utilisation, quirks, food source | Pseudomonas straminea | 1963 |
Iizuka, H., and Komagata, K. |
New species of Pseudomonas belonged to Fluorescent Group (Studies on the microorganisms of cereal grains. Part V). | Journal of the agricultural chemical society of Japan | 37(3), page(s): 137-141 | 10.1271/nogeikagaku1924.37.137 |
| Na2021 | summary, general characteristics, enzymes, metabolites, utilisation | Pseudoprevotella muciniphila | 2021 |
Na SW, Chun BH, Beak SH, Khan SA, Haque MN, Lee JS, Jeon CO, Lee SS, Baik M. |
Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium. | PLoS One | 16(5), page(s): e0251791 | 10.1371/journal.pone.0251791 |
| Park2019a | summary, general characteristics, enzymes | Roseithermus sacchariphilus, Rhodothermus marinus | 2019 |
Park MJ, Oh JH, Yang SH, Kwon KK. |
Roseithermus sacchariphilus gen. nov., sp. nov. and proposal of Salisaetaceae fam. nov., representing new family in the order Rhodothermales. | International Journal of Systematic and Evolutionary Microbiology | 69(4), page(s): 1213-1219 | 10.1099/ijsem.0.003293 |
| Sako1996 | summary, general characteristics, enzymes, metabolites, utilisation | Rhodothermus obamensis, Rhodothermus marinus | 1996 |
Sako Y, Takai K, Ishida Y, Uchida A, Katayama Y. |
Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacteria. | International Journal of Systematic Bacteriology | 46(4), page(s): 1099-1104 | 10.1099/00207713-46-4-1099 |
| Silva2000 | genetics, taxonomy | Rhodothermus marinus | 2000 |
Silva Z, Horta C, da Costa MS, Chung AP, Rainey FA. |
Polyphasic evidence for the reclassification of Rhodothermus obamensis Sako et al. 1996 as a member of the species Rhodothermus marinus Alfredsson et al. 1988. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1457-1461 | 10.1099/00207713-50-4-1457 |
| Gerritsen2018 | health, ileostoma effluent | Romboutsia hominis | 2018 |
Gerritsen J, Umanets A, Staneva I, Hornung B, Ritari J, Paulin L, Rijkers GT, de Vos WM, Smidt H. |
Romboutsia hominis sp. nov., the first human gut-derived representative of the genus Romboutsia, isolated from ileostoma effluent. | International Journal of Systematic and Evolutionary Microbiology | 68(11), page(s): 3479-3486 | 10.1099/ijsem.0.003012 |
| Petitdemange1984 | summary, general characteristics, acid from carbohydrates, metabolites | Clostridium cellulolyticum | 1984 |
Petitdemange, E., Caillet, F., Giallo, J., and Gaudin, C. |
Clostridium cellulolyticum sp. nov. , a Cellulolytic, Mesophilic: Species from Decayed Grass | International Journal of Systematic and Evolutionary Microbiology | 34(2), page(s): 155-159 | 10.1099/00207713-34-2-155 |
| Rettenmaier2021 | summary, general characteristics, acid from carbohydrates, metabolites | Ruminiclostridium herbifermentans | 2021 |
Rettenmaier R, Kowollik ML, Klingl A, Liebl W, Zverlov V. |
Ruminiclostridium herbifermentans sp. nov., a mesophilic and moderately thermophilic cellulolytic and xylanolytic bacterium isolated from a lab-scale biogas fermenter fed with maize silage. | International Journal of Systematic and Evolutionary Microbiology | 71(3), | 10.1099/ijsem.0.004692 |
| Gaffney2021 | summary, general characteristics, acid from carbohydrates | Ruminococcus bovis | 2021 |
Gaffney J, Embree J, Gilmore S, Embree M. |
Ruminococcus bovis sp. nov., a novel species of amylolytic Ruminococcus isolated from the rumen of a dairy cow. | International Journal of Systematic and Evolutionary Microbiology | 71(8), page(s): 004924 | 10.1099/ijsem.0.004924 |
| Jiang2020 | summary, general characteristics, enzymes, metabolites, antibiotics, fermented foods | Saccharibacillus brassicae | 2020 |
Jiang, L., Lim, C.J., Kim, S.-G., Jeong, J.C., Kim, C.Y., Kim, D.H., Kim, S.W., and Lee, J. |
Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds. | Journal of Microbiology | 58(1), page(s): 24-29 | 10.1007/s12275-020-9346-6 |
| Wang2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, utilisation | Salinicoccus halodurans | 2008 |
Wang X, Xue Y, Yuan S, Zhou C, Ma Y. |
Salinicoccus halodurans sp. nov., a moderate halophile from saline soil in China. | International Journal of Systematic and Evolutionary Microbiology | 58(7), page(s): 1537-1541 | 10.1099/ijs.0.65467-0 |
| Dai2006 | summary, general characteristics, enzymes, metabolites, utilisation | Yangia pacifica | 2006 |
Dai X, Wang BJ, Yang QX, Jiao NZ, Liu SJ. |
Yangia pacifica gen. nov., sp. nov., a novel member of the Roseobacter clade from coastal sediment of the East China Sea. | International Journal of Systematic and Evolutionary Microbiology | 56(3), page(s): 529-533 | 10.1099/ijs.0.64013-0 |
| Cato1984 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Actinomyces meyeri | 1984 |
Cato, E.P., Moore, W.E.C., Nygaard, G., and Holdeman, L.V. |
Actinomyces meyeri sp. nov., Specific Epithet rev. | International Journal of Systematic and Evolutionary Microbiology | 34(4), | 10.1099/00207713-34-4-487 |
| Schnurer1996 | summary, general characteristics, metabolites, utilisation | Clostridium ultunense | 1996 |
Schnurer A, Schink B, Svensson BH. |
Clostridium ultunense sp. nov., a mesophilic bacterium oxidizing acetate in syntrophic association with a hydrogenotrophic methanogenic bacterium. | International Journal of Systematic Bacteriology | 46(4), page(s): 1145-1152 | 10.1099/00207713-46-4-1145 |
| Collins1986b | summary, general characteristics, acid from carbohydrates, metabolites | Sebaldella termitidis | 1986 |
Collins, M.D., and Shah, H.N. |
Reclassification of Bacteroides termitidis Sebald (Holdeman and Moore) in a New Genus Sebaldella, as Sebaldella termitidis comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 36(2), | 10.1099/00207713-36-2-349 |
| Magot1997 | summary, general characteristics, metabolites, utilisation | Spirochaeta smaragdinae | 1997 |
Magot M, Fardeau ML, Arnauld O, Lanau C, Ollivier B, Thomas P, Patel BK. |
Spirochaeta smaragdinae sp. nov., a new mesophilic strictly anaerobic spirochete from an oil field. | FEMS Microbiology Letters | 155(2), page(s): 185-191 | 10.1111/j.1574-6968.1997.tb13876.x |
| Shivani2016 | summary, general characteristics, metabolites, utilisation | Sediminispirochaeta bajacaliforniensis, Sediminispirochaeta smaragdinae, Sediminispirochaeta sinaica | 2016 |
Shivani Y, Subhash Y, Sasikala C, Ramana CV. |
Description of 'Candidatus Marispirochaeta associata' and reclassification of Spirochaeta bajacaliforniensis, Spirochaeta smaragdinae and Spirochaeta sinaica to a new genus Sediminispirochaeta gen. nov. as Sediminispirochaeta bajacaliforniensis comb. nov., Sediminispirochaeta smaragdinae comb. nov. and Sediminispirochaeta sinaica comb. nov. | International Journal of Systematic and Evolutionary Microbiology | 66(12), page(s): 5485-5492 | 10.1099/ijsem.0.001545 |
| Antezack2021 | summary, general characteristics, oral cavity | Selenomonas timonae | 2021 |
Antezack, A., Boxberger, M., Ben Khedher, M., La Scola, B., and Monnet-Corti, V. |
Isolation and description of Selenomonas timonae sp. nov., a novel Selenomonas species detected in a gingivitis patient. | International Journal of Systematic and Evolutionary Microbiology | 71(10), | 10.1099/ijsem.0.005040 |
| Holmes1983 | clinical sources | Flavobacterium thalpophilum, Sphingobacterium thalpophilum | 1983 |
Holmes, B., Hollis, D.G., Steigerwalt, A.G., Pickett, M.J., and Brenner, D.J. |
Flavobacterium thalpophilum, a New Species Recovered from Human Clinical Material | International Journal of Systematic and Evolutionary Microbiology | 33(4), page(s): 677-682 | 10.1099/00207713-33-4-677 |
| Oshiman2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sphingomonas bisphenolicum | 2007 |
Oshiman, K., Tsutsumi, Y., Nishida, T., and Matsumura, Y. |
Isolation and characterization of a novel bacterium, Sphingomonas bisphenolicum strain AO1, that degrades bisphenol A. | Biodegradation | 18(2), page(s): 247-255 | 10.1007/s10532-006-9059-5 |
| Hyun2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sphingomonas sinipercae, Sphingomonas piscis, Nocardioides piscis | 2021 |
Hyun, D.-W., Jeong, Y.-S., Lee, J.-Y., Sung, H., Lee, S.-Y., Choi, J.-W., Kim, H.S., Kim, P.S., and Bae, J.-W. |
Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish). | Journal of Microbiology | 59(6), page(s): 552-562 | 10.1007/s12275-021-1036-5 |
| Leon2016 | summary, general characteristics, enzymes, metabolites, utilisation | Spiribacter roseus | 2016 |
León MJ, Vera-Gargallo B, Sánchez-Porro C, Ventosa A. |
Spiribacter roseus sp. nov., a moderately halophilic species of the genus Spiribacter from salterns. | International Journal of Systematic and Evolutionary Microbiology | 66(10), page(s): 4218-4224 | 10.1099/ijsem.0.001338 |
| Aksenova1992 | summary, general characteristics, acid from carbohydrates, metabolites, antibiotics, utilisation, quirks | Spirochaeta thermophila | 1992 |
Aksenova, H.Y., Rainey, F.A., Janssen, P.H., Zavarzin, G.A., and Morgan, H.W. |
Spirochaeta thermophila sp. nov., an Obligately Anaerobic, Polysaccharolytic, Extremely Thermophilic Bacterium. | International Journal of Systematic and Evolutionary Microbiology | 42(1), page(s): 175-177 | 10.1099/00207713-42-1-175 |
| Breznak2004 | summary, general characteristics, enzymes, metabolites, utilisation | Sporomusa termitida | 1988 |
Breznak, John A., Jodi M. Switzer and H. -J. Seitz. |
Sporomusa termitida sp. nov., an H2/CO2-utilizing acetogen isolated from termites. | Archives of Microbiology | 150, page(s): 282-288 | 10.1007/BF00407793 |
| Labeda2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Stackebrandtia nassauensis | 2005 |
Labeda DP, Kroppenstedt RM. |
Stackebrandtia nassauensis gen. nov., sp. nov. and emended description of the family Glycomycetaceae. | International Journal of Systematic and Evolutionary Microbiology | 55(4), page(s): 1687-1691 | 10.1099/ijs.0.63496-0 |
| Eisenberg2015 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Streptobacillus felis, Streptobacillus moniliformis | 2015 |
Eisenberg T, Glaeser SP, Nicklas W, Mauder N, Contzen M, Aledelbi K, Kämpfer P. |
Streptobacillus felis sp. nov., isolated from a cat with pneumonia, and emended descriptions of the genus Streptobacillus and of Streptobacillus moniliformis. | International Journal of Systematic and Evolutionary Microbiology | 65(7), page(s): 2172-2178 | 10.1099/ijs.0.000238 |
| Shewmaker2017 | summary, acid from carbohydrates, enzymes | Streptococcus azizii, Streptococcus acidominimus | 2017 |
Shewmaker PL, Whitney AM, Gulvik CA, Lipman NS. |
Streptococcus azizii sp. nov., isolated from naïve weanling mice. | International Journal of Systematic and Evolutionary Microbiology | 67(12), page(s): 5032-5037 | 10.1099/ijsem.0.002407 |
| Devriese1986 | summary, general characteristics, enzymes, acid from carbohydrates | Streptococcus canis | 1986 |
Devriese, L.A., Hommez, J., Kilpper-Balz, R., and Schleifer, K.H. |
Streptococcus canis sp. nov.: a Species of Group G Streptococci from Animals. | International Journal of Systematic Bacteriology | 36(3), page(s): 422-425 | 10.1099/00207713-36-3-422 |
| Vandamme1996c | genetics, taxonomy | Streptococcus dysgalactiae subsp. equisimilis | 1996 |
Vandamme P, Pot B, Falsen E, Kersters K, Devriese LA. |
Taxonomic study of lancefield streptococcal groups C, G, and L (Streptococcus dysgalactiae) and proposal of S. dysgalactiae subsp. equisimilis subsp. nov. | International Journal of Systematic Bacteriology | 46(3), page(s): 774-781 | 10.1099/00207713-46-3-774 |
| Park2019b | summary, general characteristics, enzymes, acid from carbohydrates | Streptococcus gwangjuense | 2019 |
Park SN, Lim YK, Shin JH, Chang YH, Shin Y, Paek J, Kim H, Kook JK. |
Streptococcus gwangjuense sp. nov., Isolated from Human Pericoronitis | Current Microbiology | 76(7), page(s): 799-803 | 10.1007/s00284-019-01687-8 |
| Hyun2021a | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Streptococcus ilei | 2021 |
Hyun, D.-W., Lee, J.-Y., Kim, M.-S., Shin, N.-R., Whon, T.W., Kim, K.H., Kim, P.S., Tak, E.J., Jung, M.-J., Lee, J.Y., Kim, H.S., Kang, W., Sung, H., Jeon, C.O., and Bae, J.-W. |
Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome. | Journal of Microbiology | 59(8), page(s): 792-806 | 10.1007/s12275-021-1165-x |
| Lim2019 | summary, general characteristics, enzymes, acid from carbohydrates, oral cavity, lesions | Streptococcus koreensis | 2019 |
Lim, Y.K., Park, S.-N., Shin, J.H., Ji, S., Jo, E., Chang Y.-H., Shin, Y., Paek, J., Kim, H., and Kook J.-K. |
Streptococcus koreensis sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion. | Current Microbiology | 76(12), page(s): 1531-1536 | 10.1007/s00284-019-01778-6 |
| Tsakalidou1998 | fermented foods | Streptococcus macedonicus | 1998 |
Tsakalidou E, Zoidou E, Pot B, Wassill L, Ludwig W, Devriese LA, Kalantzopoulos G, Schleifer KH, Kersters K. |
Identification of streptococci from Greek Kasseri cheese and description of Streptococcus macedonicus sp. nov. | International Journal of Systematic Bacteriology | 48(2), page(s): 519-527 | 10.1099/00207713-48-2-519 |
| Flint1999 | summary, general characteristics, enzymes, acid from carbohydrates | Streptococcus waius, Streptococcus macedonicus | 1999 |
Flint SH, Ward LJ, Brooks JD. |
Streptococcus waius sp. nov., a thermophilic Streptococcus from a biofilm. | International Journal of Systematic Bacteriology | 49(2), page(s): 759-767 | 10.1099/00207713-49-2-759 |
| Manachini2002 | summary, general characteristics, acid from carbohydrates, genetics, taxonomy | Streptococcus macedonicus, Streptococcus waius | 2002 |
Manachini PL, Flint SH, Ward LJH, Kelly W, Fortina MG, Parini C, Mora D. |
Comparison between Streptococcus macedonicus and Streptococcus waius strains and reclassification of Streptococcus waius (Flint et at. 1999) as Streptococcus macedonicus (Tsakalidou et al. 1998). | International Journal of Systematic and Evolutionary Microbiology | 52(3), page(s): 945-951 | 10.1099/00207713-52-3-945 |
| Lim2019a | summary, general characteristics, enzymes, acid from carbohydrates, oral cavity, lesions | Streptococcus periodonticum | 2019 |
Lim, Y.K., Park, S.-N., Shin, J.H., Chang, Y.-H., Shin, Y., Paek, J., Kim, H., and Kook, J.-K. |
Streptococcus periodonticum sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion. | Current Microbiology | 76(7), page(s): 835-841 | 10.1007/s00284-019-01695-8 |
| Devriese1999 | summary, general characteristics, enzymes, acid from carbohydrates | Streptococcus pluranimalium | 1999 |
Devriese LA, Vandamme P, Collins MD, Alvarez N, Pot B, Hommez J, Butaye P, Haesebrouck F. |
Streptococcus pluranimalium sp. nov., from cattle and other animals. | International Journal of Systematic Bacteriology | 49(3), page(s): 1221-1226 | 10.1099/00207713-49-3-1221 |
| Oh2020 | summary, general characteristics, enzymes, metabolites | Sutterella faecalis | 2020 |
Oh, B.S., Kim, J.-S., Yu, S.Y., Ryu, S.W., Park, S.-H., Kang, S.W., Park, J.-E., Choi, S.-H., Han, K.-I., Lee, K.C., Eom, M.K., Suh, M.K., Kim, H.S., Lee, D.H., Yoon, H., Kim, B.-Y., Lee, J.H., Lee, J.-S., and Lee, J.H. |
Sutterella faecalis sp. nov., isolated from human faeces. | Journal of Microbiology | 58(2), page(s): 99-104 | 10.1007/s12275-020-9396-9 |
| Ohno2000 | summary, general characteristics, enzymes, metabolites | Symbiobacterium thermophilum | 2000 |
Ohno M, Shiratori H, Park MJ, Saitoh Y, Kumon Y, Yamashita N, Hirata A, Nishida H, Ueda K, Beppu T. |
Symbiobacterium thermophilum gen. nov., sp. nov., a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth. | International Journal of Systematic and Evolutionary Microbiology | 50(5), page(s): 1829-1832 | 10.1099/00207713-50-5-1829 |
| Friedrich1996 | summary, general characteristics, metabolites, utilisation, quirks | Desulfofustis glycolicus, Syntrophobotulus glycolicus | 1996 |
Friedrich M, Springer N, Ludwig W, Schink B. |
Phylogenetic positions of Desulfofustis glycolicus gen. nov., sp. nov., and Syntrophobotulus glycolicus gen. nov., sp. nov., two new strict anaerobes growing with glycolic acid. | International Journal of Systematic Bacteriology | 46(4), page(s): 1065-1069 | 10.1099/00207713-46-4-1065 |
| Ansbro2020 | summary, general characteristics, enzymes, metabolites, oral cavity | Tannerella serpentiformis | 2020 |
Ansbro K, Wade WG, Stafford GP. |
Tannerella serpentiformis sp. nov., isolated from the human mouth. | International Journal of Systematic and Evolutionary Microbiology | 70(6), page(s): 3749-3754 | 10.1099/ijsem.0.004229 |
| Vartoukian2016 | summary, general characteristics, enzymes, metabolites, antibiotics | Tannerella sp. HOT-286 | 2016 |
Vartoukian SR, Moazzez RV, Paster BJ, Dewhirst FE, Wade WG. |
First Cultivation of Health-Associated Tannerella sp. HOT-286 (BU063). | Journal of Dental Research | 95(11), page(s): 1308-1313 | 10.1177/0022034516651078 |
| Westerholm2011 | summary, general characteristics, metabolites, utilisation | Tepidanaerobacter acetatoxydans | 2011 |
Westerholm M, Roos S, Schnürer A. |
Tepidanaerobacter acetatoxydans sp. nov., an anaerobic, syntrophic acetate-oxidizing bacterium isolated from two ammonium-enriched mesophilic methanogenic processes. | Systematic and Applied Microbiology | 34(4), page(s): 260-266 | 10.1016/j.syapm.2010.11.018 |
| Mori2020 | summary, general characteristics, metabolites, utilisation | Tepiditoga spiralis | 2020 |
Koji Mori, Kenta Sakurai, Akira Hosoyama, Takeshi Kakegawa, Satoshi Hanada |
Vestiges of Adaptation to the Mesophilic Environment in the Genome of Tepiditoga spiralis gen. nov., sp. nov. | Microbes and Environments | 35(4), page(s): 20046 | 10.1264/jsme2.ME20046 |
| Watanabe2007 | summary, general characteristics, enzymes, utilisation | Thermobacillus composti | 2007 |
Watanabe K, Nagao N, Yamamoto S, Toda T, Kurosawa N. |
Thermobacillus composti sp. nov., a moderately thermophilic bacterium isolated from a composting reactor. | International Journal of Systematic and Evolutionary Microbiology | 57(7), page(s): 1473-1477 | 10.1099/ijs.0.64672-0 |
| Takai1999 | summary, general characteristics, utilisation, quirks | Thermaerobacter marianensis | 1999 |
Takai K, Inoue A, Horikoshi K. |
Thermaerobacter marianensis gen. nov., sp. nov., an aerobic extremely thermophilic marine bacterium from the 11,000 m deep Mariana Trench. | International Journal of Systematic Bacteriology | 49(2), page(s): 619-628 | 10.1099/00207713-49-2-619 |
| Lu2021a | summary, general characteristics, enzymes, metabolites, utilisation, quirks, fermented foods | Thermophilibacter immobilis, Thermophilibacter gallinarum | 2021 |
Lu, L.-F., Yang, Y., Zheng, L., Zhang, R., Liu, G.-Q., Tu, T.-Y., Xu, T., Luo, X., Ran, M.-F., Zhang, L.-Q., Wang, S.-T., Shen, C.-H., and Zhang, Y.-G. |
Reclassification of Olsenella gallinarum as Thermophilibacter gallinarum comb. nov. and description of Thermophilibacter immobilis sp. nov., isolated from the mud in a fermentation cellar used for the production of Chinese Luzhou-flavour Baijiu. | International Journal of Systematic and Evolutionary Microbiology | 71(12), page(s): 005192 | 10.1099/ijsem.0.005192 |
| Schrank1999 | summary, general characteristics, enzymes, acid from carbohydrates | Treponema brennaborense | 1999 |
Schrank K, Choi BK, Grund S, Moter A, Heuner K, Nattermann H, Göbel UB. |
Treponema brennaborense sp. nov., a novel spirochaete isolated from a dairy cow suffering from digital dermatitis. | International Journal of Systematic Bacteriology | 49(1), page(s): 43-50 | 10.1099/00207713-49-1-43 |
| Umemoto1997 | summary, general characteristics, acid from carbohydrates, metabolites, oral cavity | Treponema medium | 1997 |
Umemoto T, Nakazawa F, Hoshino E, Okada K, Fukunaga M, Namikawa I. |
Treponema medium sp. nov., isolated from human subgingival dental plaque. | International Journal of Systematic Bacteriology | 47(1), page(s): 67-72 | 10.1099/00207713-47-1-67 |
| Wyss2001 | summary, general characteristics, enzymes, utilisation, oral cavity | Treponema parvum | 2001 |
Wyss C, Dewhirst FE, Gmür R, Thurnheer T, Xue Y, Schüpbach P, Guggenheim B, Paster BJ. |
Treponema parvum sp. nov., a small, glucoronic or galacturonic acid-dependent oral spirochaete from lesions of human periodontitis and acute necrotizing ulcerative gingivitis. | International Journal of Systematic and Evolutionary Microbiology | 51(3), page(s): 955-962 | 10.1099/00207713-51-3-955 |
| Evans2009 | summary, general characteristics, enzymes, lesions | Treponema pedis | 2009 |
Evans NJ, Brown JM, Demirkan I, Murray RD, Birtles RJ, Hart CA, Carter SD. |
Treponema pedis sp. nov., a spirochaete isolated from bovine digital dermatitis lesions. | International Journal of Systematic and Evolutionary Microbiology | 59(5), page(s): 987-991 | 10.1099/ijs.0.002287-0. |
| Kuhnert2020 | summary, general characteristics, enzymes, metabolites | Treponema phagedenis | 2020 |
Kuhnert P, Brodard I, Alsaaod M, Steiner A, Stoffel MH, Jores J. |
Treponema phagedenis (ex Noguchi 1912) Brumpt 1922 sp. nov., nom. rev., isolated from bovine digital dermatitis. | International Journal of Systematic and Evolutionary Microbiology | 70(3), page(s): 2115-2123 | 10.1099/ijsem.0.004027 |
| Graber2004 | summary, general characteristics, utilisation | Treponema azotonutricium, Treponema primitia | 2004 |
Graber JR, Leadbetter JR, Breznak JA. |
Description of Treponema azotonutricium sp. nov. and Treponema primitia sp. nov., the first spirochetes isolated from termite guts. | Applied and Environmental Microbiology | 70(3), page(s): 1315-1320 | 10.1128/AEM.70.3.1315-1320.2004 |
| Newbrook2017 | summary, general characteristics, enzymes | Treponema ruminis | 2017 |
Newbrook K, Staton GJ, Clegg SR, Birtles RJ, Carter SD, Evans NJ. |
Treponema ruminis sp. nov., a spirochaete isolated from the bovine rumen. | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1349-1354 | 10.1099/ijsem.0.001812 |
| Smibert1984 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, oral cavity | Treponema socranskii, Treponema socranskii subsp. socranskii, Treponema socranskii subsp. buccale, Treponema socranskii subsp. paredis | 1984 |
Smibert, Robert M., John L. Johnson and Richard R. Ranney. |
Treponema socranskii sp. nov., Treponema socranskii subsp. socranskii subsp. nov., Treponema socranskii subsp. buccale subsp. nov., and Treponema socranskii subsp. paredis subsp. nov. Isolated from the Human Periodontia. | International Journal of Systematic and Evolutionary Microbiology | 34(4), page(s): 457-462 | 10.1099/00207713-34-4-457 |
| Sung2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Tumebacillus avium | 2018 |
Sung H, Kim HS, Lee JY, Kang W, Kim PS, Hyun DW, Tak EJ, Jung MJ, Yun JH, Kim MS, Shin NR, Whon TW, Rho JR, Park SD, Shim HE, Bae JW. |
Tumebacillus avium sp. nov., isolated from the gut of a cinereous vulture, Aegypius monachus. | International Journal of Systematic and Evolutionary Microbiology | 68(5), page(s): 1659-1664 | 10.1099/ijsem.0.002725 |
| Diop2020 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics, vagina | Vaginimicrobium propionicum | 2020 |
Diop K, Cadoret F, Nguyen TT, Baudoin JP, Armstrong N, Raoult D, Bretelle F, Fournier PE, Fenollar F. |
Vaginimicrobium propionicum gen. nov., sp. nov., a novel propionic acid bacterium derived from human vaginal discharge. | International Journal of Systematic and Evolutionary Microbiology | 70(7), | 10.1099/ijsem.0.004106 |
| Mashima2021 | summary, general characteristics, enzymes, metabolites, antibiotics, utilisation, oral cavity | Veillonella nakazawae | 2021 |
Mashima, I., Theodorea, C.F., Djais, A.A., Kunihiro, T., Kawamura, Y., Otomo, M., Saitoh, M., Tamai, R., and Kiyoura, Y. |
Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children | International Journal of Systematic and Evolutionary Microbiology | 71(1), | 10.1099/ijsem.0.004583 |
| Anisimov2004 | health, plague | Yersinia pestis | 2004 |
Anisimov AP, Lindler LE, Pier GB. |
Intraspecific diversity of Yersinia pestis. | Clinical Microbiology Reviews | 17(2), page(s): 434-464 | 10.1128/CMR.17.2.434-464.2004 |
| Alfredsson1988 | summary, general characteristics, enzymes, metabolites, utilisation, quirks, antibiotics | Rhodothermus marinus | 1988 |
Gudni A. Alfredsson, Jakob K. Kristjansson, Sigridur Hjrleifsdottir, Karl O. Stetter |
Rhodothermus marinus gen. nov., sp. nov., a Thermophibic, Halophilic Bacterium from Submarine Hot Springs in Iceland. | Journal of General Microbiology | 134(2), page(s): 299-306 | 10.1099/00221287-134-2-299 |
| Vandamme1997 | health, cystic fibrosis | Burkholderia cepacia, Burkholderia multivorans, Burkholderia pyrrocinia | 1997 |
Vandamme P, Holmes B, Vancanneyt M, Coenye T, Hoste B, Coopman R, Revets H, Lauwers S, Gillis M, Kersters K, Govan JR. |
Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. | International Journal of Systematic Bacteriology | 47(4), page(s): 1188-1200 | 10.1099/00207713-47-4-1188 |
| Viallard1998 | genetics, taxonomy, summary, utilisation, general characteristics | Burkholderia graminis, Burkholderia phenazinium, Burkholderia pyrrocinia, Burkholderia glathei | 1998 |
Viallard V, Poirier I, Cournoyer B, Haurat J, Wiebkin S, Ophel-Keller K, Balandreau J. |
Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia. | International Journal of Systematic Bacteriology | 48(2), page(s): 549-563 | 10.1099/00207713-48-2-549 |
| Storms2004 | summary, general characteristics, enzymes, utilisation, genetics, taxonomy | Burkholderia pyrrocinia | 2004 |
Storms V, Van Den Vreken N, Coenye T, Mahenthiralingam E, LiPuma JJ, Gillis M, Vandamme P. |
Polyphasic characterisation of Burkholderia cepacia-like isolates leading to the emended description of Burkholderia pyrrocinia. | Systematic and Applied Microbiology | 27(5), page(s): 517-526 | 10.1078/0723202041748190 |
| Garrity2005aBergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia cepacia, Burkholderia andropogonis, Burkholderia caribensis, Burkholderia caryophylli, Burkholderia cocovenenans, Burkholderia gladioli, Burkholderia glathei, Burkholderia glumae, Burkholderia graminis, Burkholderia kururiensis, Burkholderia mallei, Burkholderia multivorans, Burkholderia phenazinium, Burkholderia plantarii, Burkholderia pseudomallei, Burkholderia pyrrocinia, Burkholderia thailandensis, Burkholderia vandii, Burkholderia vietnamiensis | 2005 |
George M. Garrity, Julia A. Bell and Timothy Lilburn |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Burkholderiaceae, Genus I. Burkholderia | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 575-600 | ISBN-13: 978-0387-24145-6 |
| Poindexter2005aBergey | summary, general characteristics, utilisation | Asticcacaulis excentricus, Asticcacaulis biprosthecum | 2005 |
J.S. Poindexter |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Caulobacteraceae, Genus II. Asticcacaulis | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 303-308 | ISBN-13: 978-0387-24145-6 |
| Wade2005Bergey | summary, general characteristics | Eggerthella guodeyinii, Eggerthella lenta, Eggerthella hongkongensis, Eggerthella sinensis | 2005 |
William G. Wade and Floyd E. Dewhirst |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Coriobacteriaceae, Genus VI. Eggerthella | Bergey's manual of systematic bacteriology. Vol 5, The Actinobacteria. | 5(A&B), page(s): 1990-1993 | ISBN 13: 9780387241449 |
| Aragno1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Aquaspirillum autotrophicum | 1978 |
Aragno, M., and Schlegel, H.G. |
Aquaspirillum autotrophicum, a New Species of Hydrogen-Oxidizing, Facultatively Autotrophic Bacteria. | International Journal of Systematic and Evolutionary Microbiology | 28(1), page(s): 112-116 | 10.1099/00207713-28-1-112 |
| Reichenbach2005Bergey | summary, general characteristics, utilisation | Sorangium cellulosum | 2005 |
Hans Reichenbach |
Bergey's manual of systematic bacteriology. Vol. 2, The The Alpha-, Beta-, Delta-, and Epsilonproteobacteria Part C. Family Polyangiaceae, Genus VI. Sorangium | Bergey's manual of systematic bacteriology. Vol. 2, The Proteobacteria Part C | 2(C), page(s): 1132-1135 | ISBN-13: 978-0387-24145-6 |
| Kandler1983a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus bifermentans | 1983 |
Otto Kandler, Ulrich Schillinger and Norbert Weiss |
Lactobacillus bifermentans sp. nov., nom. rev., an Organism Forming CO2 and H2 from Lactic Acid | Systematic and Applied Microbiology | 4(3), page(s): 408-412 | 10.1016/S0723-2020(83)80025-3 |
| Heeney2017 | summary, probiotic | Lactiplantibacillus plantarum, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Lactobacillus delbrueckii subsp. delbrueckii, Ligilactobacillus murinus, Ligilactobacillus ruminis | 2017 |
Heeney DD, Gareau MG, Marco ML. |
Intestinal Lactobacillus in health and disease, a driver or just along for the ride? | Current Opinion Biotechnology | 49, page(s): 140-147 | 10.1016/j.copbio.2017.08.004 |
| Rossi2016 | summary, probiotic, compilation | Agrilactobacillus composti, Companilactobacillus alimentarius, Companilactobacillus versmoldensis, Fructilactobacillus florum, Fructilactobacillus fructivorans, Fructilactobacillus sanfranciscensis, Furfurilactobacillus rossiae, Lacticaseibacillus casei, Lacticaseibacillus paracasei, Lacticaseibacillus rhamnosus, Lacticaseibacillus zeae, Lactiplantibacillus pentosus, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus amylolyticus, Lactobacillus buchneri subsp. buchneri, Lactobacillus crispatus, Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus equicursoris, Lactobacillus gasseri, Lactobacillus gigeriorum, Lactobacillus helveticus, Lactobacillus hominis, Lactobacillus iners, Lactobacillus jensenii, Lactobacillus johnsonii, Lactobacillus pasteurii, Lactobacillus psittaci, Lactobacillus ultunensis, Latilactobacillus sakei, Lentilactobacillus farraginis, Lentilactobacillus kisonensis, Lentilactobacillus otakiensis, Lentilactobacillus parafarraginis, Levilactobacillus brevis, Levilactobacillus namurensis, Levilactobacillus parabrevis, Ligilactobacillus acidipiscis, Ligilactobacillus animalis, Ligilactobacillus ceti, Ligilactobacillus equi, Ligilactobacillus murinus, Ligilactobacillus pobuzihii, Ligilactobacillus ruminis, Ligilactobacillus salivarius, Limosilactobacillus coleohominis, Limosilactobacillus fermentum, Limosilactobacillus gastricus, Limosilactobacillus mucosae, Limosilactobacillus oris, Limosilactobacillus reuteri, Limosilactobacillus vaginalis, Liquorilactobacillus mali, Liquorilactobacillus vini, Loigolactobacillus coryniformis, Paucilactobacillus suebicus, Schleiferilactobacillus harbinensis, Schleiferilactobacillus shenzhenensis, Enterococcus cecorum, Enterococcus faecium, Enterococcus faecalis, Enterococcus gilvus, Enterococcus avium, Enterococcus columbae, Enterococcus pallens, Enterococcus moraviensis, Enterococcus durans, Enterococcus italicus, Enterococcus pheniculicola, Enterococcus caccae, Enterococcus saccharolyticus, Enterococcus dispar, Enterococcus haemoperoxidus, Enterococcus mundtii, Enterococcus malodoratus, Enterococcus asini, Enterococcus villorum, Enterococcus casseliflavus, Enterococcus sulfureus, Pediococcus claussenii, Pediococcus acidilactici, Pediococcus pentosaceus, streptococcus saliverius, streptococcus mitis, streptococcus infantis, streptococcus australis, streptococcus thermophilus, streptococcus parasanguinis | 2016 |
Rossi M, Martínez-Martínez D, Amaretti A, Ulrici A, Raimondi S, Moya A. |
Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota. | Environmental Microbiology Reports | 8(3), page(s): 399-406 | 10.1111/1758-2229.12405 |
| Xu2003 | summary | 2003 |
Xu J, Gordon JI. |
Honor thy symbionts. | Proceeding of the National Academy of Sciences USA | 100(18), page(s): 10452-10459 | 10.1073/pnas.1734063100 | |
| Walter2008 | summary, colonising, ecology | Lacticaseibacillus casei, Lacticaseibacillus paracasei, Lacticaseibacillus rhamnosus, Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus gasseri, Ligilactobacillus salivarius, Limosilactobacillus reuteri, Ligilactobacillus ruminis, Lactiplantibacillus plantarum, Limosilactobacillus fermentum, Lactobacillus johnsonii, Levilactobacillus brevis, Lactobacillus delbrueckii subsp. delbrueckii, Latilactobacillus sakei, Limosilactobacillus vaginalis, Latilactobacillus curvatus | 2008 |
Jen Walter |
Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. | Applied and Environmental Microbiology | 74(16), page(s): 4985-4996 | 10.1128/AEM.00753-08 |
| Milani2019 | summary, quirks, fermented foods | Bifidobacterium mongoliense | 2019 |
Christian Milani, Sabrina Duranti, Stefania Napoli, Giulia Alessandri, Leonardo Mancabelli, Rosaria Anzalone, Giulia Longhi, Alice Viappiani, Marta Mangifesta, Gabriele Andrea Lugli, Sergio Bernasconi, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura & Francesca Turroni |
Colonization of the human gut by bovine bacteria present in Parmesan cheese. | Nature Communications | 10, page(s): 1286 | 10.1038/s41467-019-09303-w |
| Ilinskaya2017 | quirks | Bacillus pumilus, Bacillus licheniformis, Bacillus clausii, Bacillus subtilis, Priestia megaterium, Bacillus mediterraneensis, Bacillus thuringiensis | 2017 |
Olga N. Ilinskaya, Vera V. Ulyanova, Dina R. Yarullina and Ilgiz G. Gataullin |
Secretome of Intestinal Bacilli: A Natural Guard against Pathologies. | Frontiers in Microbiology | 8(1666), | 10.3389/fmicb.2017.01666 |
| Mitsuoka1990 | ecological succession | Bifidobacterium breve and Bifidobacterium infantis, Bifidobacterium bifidum, Bifidobacterium longum, Bifidobacterium adolescentis, Escherichia coli, Clostridium perfringens | 1990 |
Tomotari Mitsuoka |
Bifidobacteria and their role in human health. | Journal of Industrial Microbiology | 6, page(s): 263-268 | 10.1007/BF01575871 |
| Byrd2020 | gut microbiome, health, compilation | compilation | 2020 |
Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Etienne Patin, Oliver J. Harrison, Lluís Quintana-Murci, Darragh Duffy, Matthew L. Albert and The Milieu Intérieur Consortium |
Stability and dynamics of the human gut microbiome and its association with systemic immune traits. | bioRxiv | page(s): 909853 | 10.1101/2020.01.17.909853 |
| Pfeiffer2012 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Acetatifactor muris | 2012 |
Pfeiffer N, Desmarchelier C, Blaut M, Daniel H, Haller D, Clavel T. |
Acetatifactor muris gen. nov., sp. nov., a novel bacterium isolated from the intestine of an obese mouse. | Archives of Microbiology | 194(11), page(s): 901-907 | 10.1007/s00203-012-0822-1 |
| Robinson1981 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, image | Acetivibrio ethanolgignens | 1981 |
M. Robinson, A. E. Ritchie |
Emendation of Acetivibrio and Description of Acetivibrio ethanolgignens, a New Species from the Colons of Pigs with Dysentery. | International Journal of Systematic and Evolutionary Microbiology | 31(3), page(s): 333-338 | 10.1099/00207713-31-3-333 |
| Zou2021 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Butyribacter intestini, Acetivibrio ethanolgignens | 2021 |
Yuanqiang Zou, Wenbin Xue, Xiaoqian Lin, Mei Lv, Guangwen Luo, Ying Dai, Haipeng Sun, Shao-wei Liu, Cheng-hang Sun, Tongyuan Hu, Liang Xiao |
Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov. | Systematic and Applied Microbiology | 44(3), page(s): 126201 | 10.1016/j.syapm.2021.126201 |
| Renvoise2009a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, blood infection | Actinomyces massiliensis | 2009 |
Renvoise A, Raoult D, Roux V. |
Actinomyces massiliensis sp. nov., isolated from a patient blood culture. | International Journal of Systematic and Evolutionary Microbiology | 59(3), page(s): 540-544 | 10.1099/ijs.0.001503-0 |
| Clavel2010a | health, colitis | Enterorhabdus caecimuris | 2010 |
Clavel T, Duck W, Charrier C, Wenning M, Elson C, Haller D. |
Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009. | International Journal of Systematic and Evolutionary Microbiology | 60(7), page(s): 1527-1531 | 10.1099/ijs.0.015016-0 |
| Park2014 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation, antibiotics | Pseudoruegeria sabulilitoris | 2014 |
Park S, Jung YT, Won SM, Yoon JH. |
Pseudoruegeria sabulilitoris sp. nov., isolated from seashore sand. | International Journal of Systematic and Evolutionary Microbiology | 64(9), page(s): 3276-3281 | 10.1099/ijs.0.066258-0 |
| Mertz1993 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, substrate utilisation, antibiotics | Amycolatopsis alba | 1993 |
Mertz FP, Yao RC. |
Amycolatopsis alba sp. nov., isolated from soil. | International Journal of Systematic Bacteriology | 43(4), page(s): 715-720 | 10.1099/00207713-43-4-715 |
| Chomchoei2011 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Amycolatopsis thailandensis | 2011 |
Chomchoei A, Pathom-Aree W, Yokota A, Kanongnuch C, Lumyong S. |
Amycolatopsis thailandensis sp. nov., a poly(L-lactic acid)-degrading actinomycete, isolated from soil. | International Journal of Systematic and Evolutionary Microbiology | 61(4), page(s): 839-843 | 10.1099/ijs.0.023564-0 |
| Wink2003 | summary, general characteristics, enzymes, metabolites, utilisation | Amycolatopsis balhimycina, Amycolatopsis tolypomycina, Amycolatopsis vancoresmycina | 2003 |
Wink JM, Kroppenstedt RM, Ganguli BN, Nadkarni SR, Schumann P, Seibert G, Stackebrandt E. |
Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. | Systematic and Applied Microbiology | 26(1), page(s): 38-46 | 10.1078/072320203322337290 |
| Tholozan1992 | summary, general characteristics, utilisation, image | Clostridium neopropionicum | 1992 |
Tholozan JL, Touzel JP, Samain E, Grivet JP, Prensier G, Albagnac G. |
Clostridium neopropionicum sp. nov., a strict anaerobic bacterium fermenting ethanol to propionate through acrylate pathway. | Archives of Microbiology | 157(3), page(s): 249-257 | 10.1007/BF00245158 |
| Belkacemi2017 | skin | Bacteroides cutis | 2017 |
Belkacemi S, Cassir N, Delerce J, Cadoret F, La Scola B. |
'Bacteroides cutis,' a new bacterial species isolated from human skin. | New Microbes New Infections | 22, page(s): 17-18 | 10.1016/j.nmni.2017.12.007 |
| Hatamoto2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides luti | 2014 |
Hatamoto M, Kaneshige M, Nakamura A, Yamaguchi T. |
Bacteroides luti sp. nov., an anaerobic, cellulolytic and xylanolytic bacterium isolated from methanogenic sludge. | International Journal of Systematic and Evolutionary Microbiology | 64(5), page(s): 1770-1774 | 10.1099/ijs.0.056630-0 |
| Sakamoto2013a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bacteroides reticulotermitis | 2013 |
Sakamoto M, Ohkuma M. |
Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus). | International Journal of Systematic and Evolutionary Microbiology | 63(2), page(s): 691-695 | 10.1099/ijs.0.040931-0 |
| Modesto2018 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bifidobacterium callitrichidarum | 2018 |
Modesto M, Michelini S, Sansosti MC, De Filippo C, Cavalieri D, Qvirist L, Andlid T, Spiezio C, Sandri C, Pascarelli S, Sgorbati B, Mattarelli P. |
Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator). | International Journal of Systematic and Evolutionary Microbiology | 68(1), page(s): 141-148 | 10.1099/ijsem.0.002472 |
| Tsuchida2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bifidobacterium moukalabense | 2014 |
Tsuchida S, Takahashi S, Nguema PPM, Fujita S, Kitahara M, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida K. |
Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla). | International Journal of Systematic and Evolutionary Microbiology | 64(2), page(s): 449-455 | 10.1099/ijs.0.055186-0 |
| Michelini2016b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Bifidobacterium myosotis, Bifidobacterium tissieri, Bifidobacterium hapali | 2016 |
Michelini S, Oki K, Yanokura E, Shimakawa Y, Modesto M, Mattarelli P, Biavati B, Watanabe K. |
Bifidobacterium myosotis sp. nov., Bifidobacterium tissieri sp. nov. and Bifidobacterium hapali sp. nov., isolated from faeces of baby common marmosets (Callithrix jacchus L.). | International Journal of Systematic and Evolutionary Microbiology | 66(1), page(s): 255-265 | 10.1099/ijsem.0.000708 |
| Michelini2015 | genetics, taxonomy | Bifidobacterium myosotis | 2015 |
Michelini S, Modesto M, Oki K, Stenico V, Stefanini I, Biavati B, Watanabe K, Ferrara A, Mattarelli P. |
Isolation and identification of cultivable Bifidobacterium spp. from the faeces of 5 baby common marmosets (Callithrix jacchus L.). | Anaerobe | 33, page(s): 101-104 | 10.1016/j.anaerobe.2015.03.001 |
| Gavrish2004 | summary, general characteristics | Brevibacterium antiquum, Brevibacterium aurantiacum, Brevibacterium permense | 2004 |
Gavrish EIu, Krauzova VI, Potekhina NV, Karasev SG, Plotnikova EG, Altyntseva OV, Korosteleva LA, Evtushenko LI. |
Tri novykh vida brevibakteriĭ--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. i Brevibacterium permense sp. nov [Three new species of brevibacteria--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov]. | Mikrobiologiia | 73(2), page(s): 218-225 | 15198034 PMID |
| Trachsel2018 | butyrate | Butyricicoccus porcorum | 2018 |
Trachsel J, Humphrey S, Allen HK. |
Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract. | International Journal of Systematic and Evolutionary Microbiology | 68(5), page(s): 1737-1742 | 10.1099/ijsem.0.002738 |
| Guentas2016 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Burkholderia novacaledonica, Burkholderia ultramafica | 2016 |
Linda Guentas, Simon Gensous, Yvon Cavaloc, Marc Ducousso, Hamid Amir, Benjamin De Georges de Ledenon, Lionel Moulin, Philippe Jourand |
Burkholderia novacaledonica sp. nov. and B. ultramafica sp. nov. isolated from roots of Costularia spp. pioneer plants of ultramafic soils in New Caledonia. | Systematic and Applied Microbiology | 39(3), page(s): 151-159 | 10.1016/j.syapm.2016.03.008 |
| Frandsen2008 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Capnocytophaga leadbetteri, Capnocytophaga genospecies AHN8471 | 2008 |
Frandsen EV, Poulsen K, Könönen E, Kilian M. |
Diversity of Capnocytophaga species in children and description of Capnocytophaga leadbetteri sp. nov. and Capnocytophaga genospecies AHN8471. | International Journal of Systematic and Evolutionary Microbiology | 58(2), page(s): 324-336 | 10.1099/ijs.0.65373-0 |
| Shi2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Cellulomonas carbonis | 2012 |
Shi Z, Luo G, Wang G. |
Cellulomonas carbonis sp. nov., isolated from coal mine soil. | International Journal of Systematic and Evolutionary Microbiology | 62(8), page(s): 2004-2010 | 10.1099/ijs.0.034934-0 |
| Zamora2012a | summary, general characteristics, enzymes, metabolites, utilisation | Chryseobacterium viscerum | 2012 |
Zamora L, Vela AI, Palacios MA, Sánchez-Porro C, Svensson-Stadler LA, Domínguez L, Moore ERB, Ventosa A, Fernández-Garayzábal JF. |
Chryseobacterium viscerum sp. nov., isolated from diseased fish. | International Journal of Systematic and Evolutionary Microbiology | 62(12), page(s): 2934-2940 | 10.1099/ijs.0.036699-0 |
| Schauer1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Citrobacter rodentium | 1995 |
Schauer DB, Zabel BA, Pedraza IF, O'Hara CM, Steigerwalt AG, Brenner DJ. |
Genetic and biochemical characterization of Citrobacter rodentium sp. nov. | Journal of Clinical Microbiology | 33(8), page(s): 2064-2068 | 10.1128/jcm.33.8.2064-2068.1995 |
| Wiegel1989 | butyrate | Clostridium thermobutyricum | 1989 |
Juergen Wiegel, Seung-UK Kuk, Gert W. Kohring |
Clostridium thermobutyricum sp. nov., a Moderate Thermophile Isolated from a Cellulolytic Culture, That Produces Butyrate as the Major Product. | International Journal of Systematic and Evolutionary Microbiology | 39(2), page(s): 199-204 | 10.1099/00207713-39-2-199 |
| Diop2016d | female genital tract | Collinsella vaginalis | 2016 |
Khoudia Diop, Florence Bretelle, Pierre-Edouard Fournier, Didier Raoult, Florence Fenollar |
'Collinsella vaginalis' sp. nov., a new bacterial species cultivated from human female genital tract. | Human Microbiome Journal | 2, page(s): 19-20 | 10.1016/j.humic.2016.11.001 |
| Riegel1995b | throat | Corynebacterium argentoratense | 1995 |
Riegel P, Ruimy R, De Briel D, Prevost G, Jehl F, Bimet F, Christen R, Monteil H. |
Corynebacterium argentoratense sp. nov., from the human throat. | International Journal of Systematic Bacteriology | 45(3), page(s): 533-537 | 10.1099/00207713-45-3-533 |
| Niang2019 | urinary tract infection, clinical sources | Corynebacterium urinapleomorphum | 2019 |
Niang EHA, Lo CI, Morand A, Ndongo S, Raoult D, Fournier PE, Fenollar F. |
Corynebacterium urinapleomorphum sp. nov., a new bacterial species isolated from human urine sample. | New Microbes New Infections | 31, page(s): 100576 | 10.1016/j.nmni.2019.100576 |
| Morand2016 | urinary tract infection, clinical sources | Corynebacterium urinapleomorphum | 2016 |
Morand A, Chabrol B, Cadoret F, Fournier PE, Raoult D. |
"Corynebacterium urinapleomorphum" sp. nov., isolated from a urine sample of a 2-month-old boy affected by rotavirus gastroenteritis. | New Microbes New Infections | 15, page(s): 21-23 | 10.1016/j.nmni.2016.09.010 |
| Maheux2021 | clinical sources | Criibacterium bergeronii | 2021 |
Andrée F. Maheux, Dominique K. Boudreau, Jehane Y. Abed, Ève Bérubé1, Stéphanie Brodeur, Kathryn A. Bernard, Ameena Hashimi, Éloïse Ducrey, Émilie F. Guay, Frédéric Raymond, Jacques Corbeil, Marc-Christian Domingo, Paul H. Roy, Maurice Boissinot, Elitza I. Tocheva, Rabeea F. Oma |
Criibacterium bergeronii gen. nov., sp. nov., a new member of the family Peptostreptococcaceae, isolated from human clinical samples. | International Journal of Systematic and Evolutionary Microbiology | 71(3), page(s): 004691 | 10.1099/ijsem.0.004691 |
| Wu2020a | genetics | Enterobacter mori, Enterobacter tabaci | 2020 |
Wu W, Zong Z. |
Genome analysis-based reclassification of Enterobacter tabaci Duan et al. 2016 as a later heterotypic synonym of Enterobacter mori Zhu et al. 2011. | International Journal of Systematic and Evolutionary Microbiology | 70(2), page(s): 1055-1058 | 10.1099/ijsem.0.003871 |
| Zhu2011 | summary, general characteristics, enzymes, metabolites, utilisation | Enterobacter mori | 2011 |
Zhu B, Lou MM, Xie GL, Wang GF, Zhou Q, Wang F, Fang Y, Su T, Li B, Duan YP. |
Enterobacter mori sp. nov., associated with bacterial wilt on Morus alba L. | International Journal of Systematic and Evolutionary Microbiology | 61(11), page(s): 2769-2774 | 10.1099/ijs.0.028613-0 |
| Duan2015 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation, antibiotics | Enterobacter mori, Enterobacter tabaci | 2015 |
Duan YQ, Zhou XK, Di-Yan L, Li QQ, Dang LZ, Zhang YG, Qiu LH, Nimaichand S, Li WJ. |
Enterobacter tabaci sp. nov., a novel member of the genus Enterobacter isolated from a tobacco stem. | Antonie Van Leeuwenhoek | 108(5), page(s): 1161-1169 | 10.1007/s10482-015-0569-1 |
| Devriese1990 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Enterococcus columbae | 1990 |
Devriese LA, Ceyssens K, Rodrigues UM, Collins MD. |
Enterococcus columbae, a species from pigeon intestines. | FEMS Microbiology Letters | 59(3), page(s): 247-251 | 10.1016/0378-1097(90)90228-i |
| Svec2001 | water source | Enterococcus haemoperoxidus, Enterococcus moraviensis | 2001 |
Svec P, Devriese LA, Sedlácek I, Baele M, Vancanneyt M, Haesebrouck F, Swings J, Doskar J. |
Enterococcus haemoperoxidus sp. nov. and Enterococcus moraviensis sp. nov., isolated from water. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1567-1574 | 10.1099/00207713-51-4-1567 |
| Dewhirst1999 | taxonomy | Eubacterium plexicaudatum | 1999 |
Dewhirst FE, Chien CC, Paster BJ, Ericson RL, Orcutt RP, Schauer DB, Fox JG. |
Phylogeny of the defined murine microbiota: altered Schaedler flora. | Applied and Environmental Microbiology | 65(8), page(s): 3287-3292 | 10.1128/AEM.65.8.3287-3292.1999 |
| Pagnier2014a | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Fenollaria massiliensis | 2014 |
Pagnier I, Croce O, Robert C, Raoult D, La Scola B. |
Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium. | Standards in Genomic Science | 9(3), page(s): 704-717 | 10.4056/sigs.3957647 |
| Endo2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus florum | 2010 |
Endo A, Futagawa-Endo Y, Sakamoto M, Kitahara M, Dicks LMT. |
Lactobacillus florum sp. nov., a fructophilic species isolated from flowers. | International Journal of Systematic and Evolutionary Microbiology | 60(10), page(s): 2478-2482 | 10.1099/ijs.0.019067-0 |
| Zhao2019 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus fructivorans | 2019 |
Wei Zhao, Chun Tao Gu |
Lactobacillus homohiochii is a later heterotypic synonym of Lactobacillus fructivorans. | International Journal of Systematic and Evolutionary Microbiology | 69(6), page(s): 1720–1723 | 10.1099/ijsem.0.003380 |
| Corsetti2005 | fermented foods | Lactobacillus rossiae | 2005 |
Corsetti A, Settanni L, van Sinderen D, Felis GE, Dellaglio F, Gobbetti M. |
Lactobacillus rossii sp. nov., isolated from wheat sourdough. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 35-40 | 10.1099/ijs.0.63075-0 |
| Koeck2015 | summary, general characteristics, enzymes, utilisation, metabolites | Herbinix hemicellulosilytica | 2015 |
Koeck DE, Ludwig W, Wanner G, Zverlov VV, Liebl W, Schwarz WH. |
Herbinix hemicellulosilytica gen. nov., sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor. | International Journal of Systematic and Evolutionary Microbiology | 65(8), page(s): 2365-2371 | 10.1099/ijs.0.000264 |
| Haas2017 | butyrate | Kineothrix alysoides | 2017 |
Haas KN, Blanchard JL. |
Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic butyrate-producer within the family Lachnospiraceae. | International Journal of Systematic and Evolutionary Microbiology | 67(2), page(s): 402-410 | 10.1099/ijsem.0.001643 |
| Long2017 | clinical sources | Klebsiella quasivariicola | 2017 |
Long, S.W., Linson, S.E., Ojeda Saavedra, M., Cantu, C., Davis, J.J., Brettin, T., and Olsen, R.J. |
Whole-Genome Sequencing of a Human Clinical Isolate of the Novel Species Klebsiella quasivariicola sp. nov. | Genome Announcements | 5(42), page(s): e01057-17 | 10.1128/genomeA.01057-17 |
| Morita2010 | summary, general characteristics, enzymes, acid from carbohydrates | Lactobacillus equicursoris | 2010 |
Morita H, Shimazu M, Shiono H, Toh H, Nakajima F, Akita H, Takagi M, Takami H, Murakami M, Masaoka T, Tanabe S, Hattori M. |
Lactobacillus equicursoris sp. nov., isolated from the faeces of a thoroughbred racehorse. | International Journal of Systematic and Evolutionary Microbiology | 60(1), page(s): 109-112 | 10.1099/ijs.0.009290-0 |
| Cousin2012 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus gigeriorum | 2012 |
Cousin S, Gulat-Okalla ML, Motreff L, Gouyette C, Bouchier C, Clermont D, Bizet C. |
Lactobacillus gigeriorum sp. nov., isolated from chicken crop. | International Journal of Systematic and Evolutionary Microbiology | 62(2), page(s): 330-334 | 10.1099/ijs.0.028217-0 |
| Cousin2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus pasteurii, Lactobacillus hominis | 2013 |
Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Spröer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C. |
Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 63(1), page(s): 53-59 | 10.1099/ijs.0.036665-0 |
| Lawson2001c | summary, general characteristics, enzymes, acid from carbohydrates | Lactobacillus psittaci | 2001 |
Lawson PA, Wacher C, Hansson I, Falsen E, Collins MD. |
Lactobacillus psittaci sp. nov., isolated from a hyacinth macaw (Anodorhynchus hyacinthinus). | International Journal of Systematic and Evolutionary Microbiology | 51(3), page(s): 967-970 | 10.1099/00207713-51-3-967 |
| Goodman2017 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactococcus petauri | 2017 |
Goodman LB, Lawton MR, Franklin-Guild RJ, Anderson RR, Schaan L, Thachil AJ, Wiedmann M, Miller CB, Alcaine SD, Kovac J. |
Lactococcus petauri sp. nov., isolated from an abscess of a sugar glider. | International Journal of Systematic and Evolutionary Microbiology | 67(11), page(s): 4397-4404 | 10.1099/ijsem.0.002303 |
| Endo2007 | summary, general characteristics, enzymes, acid from carbohydrates, food waste | Lentilactobacillus farraginis, Lentilactobacillus parafarraginis | 2007 |
Endo A, Okada S. |
Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 708-712 | 10.1099/ijs.0.64618-0 |
| Scheirlinck2007 | fermented foods | Lactobacillus namurensis | 2007 |
Scheirlinck I, Van der Meulen R, Van Schoor A, Cleenwerck I, Huys G, Vandamme P, De Vuyst L, Vancanneyt M. |
Lactobacillus namurensis sp. nov., isolated from a traditional Belgian sourdough. | International Journal of Systematic and Evolutionary Microbiology | 57(2), page(s): 223-227 | 10.1099/ijs.0.64607-0 |
| Vancanneyt2006 | summary, general characteristics, enzymes, acid from carbohydrates | Lactobacillus parabrevis | 2006 |
Vancanneyt M, Naser SM, Engelbeen K, De Wachter M, Van der Meulen R, Cleenwerck I, Hoste B, De Vuyst L, Swings J. |
Reclassification of Lactobacillus brevis strains LMG 11494 and LMG 11984 as Lactobacillus parabrevis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(7), page(s): 1553-1557 | 10.1099/ijs.0.64215-0 |
| Vela2008 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Lactobacillus ceti | 2008 |
Vela AI, Fernandez A, Espinosa de los Monteros A, Goyache J, Herraez P, Tames B, Cruz F, Domínguez L, Fernández-Garayzábal JF. |
Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris). | International Journal of Systematic and Evolutionary Microbiology | 58(4), page(s): 891-894 | 10.1099/ijs.0.65372-0 |
| Morotomi2002 | summary, general characteristics, enzymes, acid from carbohydrates | Lactobacillus equi | 2002 |
Morotomi M, Yuki N, Kado Y, Kushiro A, Shimazaki T, Watanabe K, Yuyama T. |
Lactobacillus equi sp. nov., a predominant intestinal Lactobacillus species of the horse isolated from faeces of healthy horses. | International Journal of Systematic and Evolutionary Microbiology | 52(1), page(s): 211-214 | 10.1099/00207713-52-1-211 |
| Chen2010a | fermented foods | Lactobacillus pobuzihii | 2010 |
Chen YS, Miyashita M, Suzuki KI, Sato H, Hsu JS, Yanagida F. |
Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia). | International Journal of Systematic and Evolutionary Microbiology | 60(8), page(s): 1914-1917 | 10.1099/ijs.0.016873-0 |
| Rodas2006 | food sources | Lactobacillus vini | 2006 |
Rodas AM, Chenoll E, Macián MC, Ferrer S, Pardo I, Aznar R. |
Lactobacillus vini sp. nov., a wine lactic acid bacterium homofermentative for pentoses. | International Journal of Systematic and Evolutionary Microbiology | 56(3), page(s): 513-517 | 10.1099/ijs.0.63877-0 |
| Shiratori2008 | summary, general characteristics, enzymes, metabolites, utilisation, image, antibiotics | Lutispora thermophila | 2008 |
Shiratori H, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K. |
Lutispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming bacterium isolated from a thermophilic methanogenic bioreactor digesting municipal solid wastes. | International Journal of Systematic and Evolutionary Microbiology | 58(4), page(s): 964-969 | 10.1099/ijs.0.65490-0 |
| VernozyRozand2000 | fermented foods | Staphylococcus fleurettii | 2000 |
Vernozy-Rozand C, Mazuy C, Meugnier H, Bes M, Lasne Y, Fiedler F, Etienne J, Freney J. |
Staphylococcus fleurettii sp. nov., isolated from goat's milk cheeses. | International Journal of Systematic and Evolutionary Microbiology | 50(4), page(s): 1521-1527 | 10.1099/00207713-50-4-1521 |
| Engelmann1985 | food spoilage | Megasphaera cerevisiae | 1985 |
Ute Engelmann, Norbert Weiss |
Megasphaera cerevisiae sp. nov.: A New Gram-negative Obligately Anaerobic Coccus Isolated from Spoiled Beer. | Systematic and Applied Microbiology | 6(3), page(s): 287-290 | 10.1016/S0723-2020(85)80033-3 |
| Nandasena2009 | summary, general characteristics, utilisation, antibiotics | Mesorhizobium australicum, Mesorhizobium opportunistum | 2009 |
Nandasena KG, O'Hara GW, Tiwari RP, Willems A, Howieson JG. |
Mesorhizobium australicum sp. nov. and Mesorhizobium opportunistum sp. nov., isolated from Biserrula pelecinus L. in Australia. | International Journal of Systematic and Evolutionary Microbiology | 59(9), page(s): 2140-2147 | 10.1099/ijs.0.005728-0 |
| Zhang2012a | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Mesorhizobium muleiense | 2012 |
Zhang JJ, Liu TY, Chen WF, Wang ET, Sui XH, Zhang XX, Li Y, Li Y, Chen WX. |
Mesorhizobium muleiense sp. nov., nodulating with Cicer arietinum L. | International Journal of Systematic and Evolutionary Microbiology | 62(11), page(s): 2737-2742 | 10.1099/ijs.0.038265-0 |
| Schinsky2004 | clinical sources | Mycobacterium fortuitum, Mycobacterium boenickei, Mycobacterium houstonense, Mycobacterium neworleansense, Mycobacterium brisbanense, Mycobacterium porcinum | 2004 |
Schinsky MF, Morey RE, Steigerwalt AG, Douglas MP, Wilson RW, Floyd MM, Butler WR, Daneshvar MI, Brown-Elliott BA, Wallace RJ, McNeil MM, Brenner DJ, Brown JM. |
Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates. | International Journal of Systematic and Evolutionary Microbiology | 54(5), page(s): 1653-1667 | 10.1099/ijs.0.02743-0 |
| Simmon2009 | Mycobacterium aurum, Mycobacterium neoaurum | 2009 |
Simmon KE, Low YY, Brown-Elliott BA, Wallace RJ Jr, Petti CA. |
Phylogenetic analysis of Mycobacterium aurum and Mycobacterium neoaurum with redescription of M. aurum culture collection strains. | International Journal of Systematic and Evolutionary Microbiology | 59(6), page(s): 1371-1375 | 10.1099/ijs.0.007799-0 | |
| Goodfellow1982 | summary, general characteristics, enzymes, metabolites, utilisation | Nocardia brevicatena | 1982 |
Goodfellow M, Pirouz T. |
Numerical classification of sporoactinomycetes containing meso-diaminopimelic acid in the cell wall. | Journal of General Microbiology | 128(3), page(s): 503-527 | 10.1099/00221287-128-3-503 |
| Dicks1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, genetics | Oenococcus oeni | 1995 |
Dicks LM, Dellaglio F, Collins MD. |
Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov. | International Journal of Systematic Bacteriology | 45(2), page(s): 395-397 | 10.1099/00207713-45-2-395 |
| Garvie1967a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Leuconostoc oenos | 1967 |
Garvie EI. |
Leuconostoc oenos sp.nov. | Journal of General Bacteriology | 48(3), page(s): 431-438 | 10.1099/00221287-48-3-431 |
| Diop2017b | female genital tract | Olegusella massiliensis | 2017 |
Diop K, Diop A, Bretelle F, Cadoret F, Michelle C, Richez M, Cocallemen JF, Raoult D, Fournier PE, Fenollar F. |
Olegusella massiliensis gen. nov., sp. nov., strain KHD7T, a new bacterial genus isolated from the female genital tract of a patient with bacterial vaginosis. | Anaerobe | 44, page(s): 87-95 | 10.1016/j.anaerobe.2017.02.012 |
| Diop2016e | female genital tract | Olegusella massiliensis | 2016 |
Diop K, Diop A, Raoult D, Fournier PE, Fenollar F. |
'Olegusella massiliensis' strain KHD7, a new bacterial genus isolated from the female genital tract. | New Microbes New Infections | 12, page(s): 56-58 | 10.1016/j.nmni.2016.04.008 |
| Morand2016a | urinary tract infection, gastric reflux, clinical sources | Olsenella urininfantis | 2016 |
Aurélie Morand, Brigitte Chabrol, Pierre-Edouard Fournier |
'Olsenella urininfantis', a new bacterial species isolated from a urine sample of a 26-day-old boy suffering from gastroesophageal reflux. | Human Microbiome Journal | 2, page(s): 17-18 | 10.1016/j.humic.2016.11.003 |
| Sizova2014 | oral cavity | Oribacterium parvum, Oribacterium asaccharolyticum | 2014 |
Sizova MV, Muller PA, Stancyk D, Panikov NS, Mandalakis M, Hazen A, Hohmann T, Doerfert SN, Fowle W, Earl AM, Nelson KE, Epstein SS. |
Oribacterium parvum sp. nov. and Oribacterium asaccharolyticum sp. nov., obligately anaerobic bacteria from the human oral cavity, and emended description of the genus Oribacterium. | International Journal of Systematic and Evolutionary Microbiology | 64(8), page(s): 2642-2649 | 10.1099/ijs.0.060988-0 |
| Lee2013a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Oscillibacter ruminantium | 2013 |
Lee GH, Rhee MS, Chang DH, Lee J, Kim S, Yoon MH, Kim BC. |
Oscillibacter ruminantium sp. nov., isolated from the rumen of Korean native cattle. | International Journal of Systematic and Evolutionary Microbiology | 63(6), page(s): 1942-1946 | 10.1099/ijs.0.041749-0 |
| Kitahara2013 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Parabacteroides chinchillae | 2013 |
Kitahara M, Sakamoto M, Tsuchida S, Kawasumi K, Amao H, Benno Y, Ohkuma M. |
Parabacteroides chinchillae sp. nov., isolated from chinchilla (Chincilla lanigera) faeces. | International Journal of Systematic and Evolutionary Microbiology | 63(9), page(s): 3470-3474 | 10.1099/ijs.0.050146-0 |
| Lagkouvardos2019 | summary, general characteristics, utilisation | Paramuribaculum intestinale | 2019 |
Lagkouvardos I, Lesker TR, Hitch TCA, Gálvez EJC, Smit N, Neuhaus K, Wang J, Baines JF, Abt B, Stecher B, Overmann J, Strowig T, Clavel T. |
Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. | Microbiome | 7(1), page(s): 28 | 10.1186/s40168-019-0637-2 |
| Kleynmans1989 | food sources | Lactobacillus suebicus | 1989 |
Ulrich Kleynmans, HannsjÖrg Heinzl, Walter P. Hammes |
Lactobacillus suebicus sp. nov., an Obligately Heterofermentative Lactobacillus Species Isolated from Fruit Mashes | Systematic and Applied Microbiology | 11(3), page(s): 267-271 | 10.1016/S0723-2020(89)80024-4 |
| Gardan2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pectobacterium atrosepticum, Pectobacterium betavasculorum, Pectobacterium wasabiae | 2003 |
Gardan L, Gouy C, Christen R, Samson R. |
Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 53(2), page(s): 381-391 | 10.1099/ijs.0.02423-0 |
| Yoon2007a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pedobacter panaciterrae | 2007 |
Yoon MH, Ten LN, Im WT, Lee ST. |
Pedobacter panaciterrae sp. nov., isolated from soil in South Korea. | International Journal of Systematic and Evolutionary Microbiology | 57(2), page(s): 381-386 | 10.1099/ijs.0.64693-0 |
| Chen2010b | food source (sea anemone) | Pontibacillus litoralis | 2010 |
Chen YG, Zhang YQ, Yi LB, Li ZY, Wang YX, Xiao HD, Chen QH, Cui XL, Li WJ. |
Pontibacillus litoralis sp. nov., a facultatively anaerobic bacterium isolated from a sea anemone, and emended description of the genus Pontibacillus. | International Journal of Systematic and Evolutionary Microbiology | 60(3), page(s): 560-565 | 10.1099/ijs.0.009910-0 |
| Love1994 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Porphyromonas canoris | 1994 |
Love DN, Karjalainen J, Kanervo A, Forsblom B, Sarkiala E, Bailey GD, Wigney DI, Jousimies-Somer H. |
Porphyromonas canoris sp. nov., an asaccharolytic, black-pigmented species from the gingival sulcus of dogs. | International Journal of Systematic Bacteriology | 44(2), page(s): 204-208 | 10.1099/00207713-44-2-204 |
| Shah1995 | genetics, taxonomy | Porphyromonas levii | 1995 |
Shah, H.N., Collins, M.D., Olsen, I., Paster, B.J., and Dewhirst, F.E. |
Reclassification of Bacteroides levii (Holderman, Cato, and Moore) in the genus Porphyromonas, as Porphyromonas levii comb. nov. | International Journal of Systematic Bacteriology | 45(3), page(s): 586-588 | 10.1099/00207713-45-3-586 |
| Love1995 | summary, general characteristics, enzymes, metabolites, utilisation | Porphyromonas macacae | 1995 |
Love, D.N. |
Porphyromonas macacae comb. nov., a Consequence of Bacteroides macacae Being a Senior Synonym of Porphyromonas salivosa. | International Journal of Systematic and Evolutionary Microbiology | 45(1), page(s): 90-92 | 10.1099/00207713-45-1-90 |
| Slots1980 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Bacteroides macacae | 1980 |
Slots, J., and Genco, R.J. |
Bacteroides melaninogenicus subsp. macacae, a New Subspecies from Monkey Periodontopathic Indigenous Microflora. | International Journal of Systematic and Evolutionary Microbiology | 30(1), page(s): 82-85 | 10.1099/00207713-30-1-82 |
| Takada2010 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Prevotella dentasini | 2010 |
Takada K, Hayashi K, Sato Y, Hirasawa M. |
Prevotella dentasini sp. nov., a black-pigmented species isolated from the oral cavity of donkeys. | International Journal of Systematic and Evolutionary Microbiology | 60(7), page(s): 1637-1639 | 10.1099/ijs.0.017020-0 |
| Downes2008 | oral cavity | Prevotella histicola | 2008 |
Downes J, Hooper SJ, Wilson MJ, Wade WG. |
Prevotella histicola sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 58(8), page(s): 1788-1791 | 10.1099/ijs.0.65656-0 |
| Guilhot2017 | summary, general characteristics | Prevotella ihumii, Varibaculum timonense | 2017 |
Guilhot E, Lagier JC, Raoult D, Khelaifia S. |
'Prevotella ihumii' sp. nov. and 'Varibaculum timonense' sp. nov., two new bacterial species isolated from a fresh human stool specimen. | New Microbes New Infections | 18, page(s): 3-5 | 10.1016/j.nmni.2017.03.002 |
| Anani2019a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Prevotella ihumii | 2019 |
Anani H, Guilhot E, Andrieu C, Fontanini A, Raoult D, Fournier PE. |
Prevotella ihumii sp. nov., a new bacterium isolated from a stool specimen of a healthy woman. | New Microbes New Infections | 32, page(s): 100607 | 10.1016/j.nmni.2019.100607 |
| Diop2018 | vaginosis | Prevotella lascolaii | 2018 |
Khoudia Diop, Awa Diop, Anthony Levasseur, Oleg Mediannikov, Catherine Robert, Nicholas Armstrong, Carine Couderc, Florence Bretelle, Didier Raoult, Pierre-Edouard Fournier, and Florence Fenollar |
Microbial Culturomics Broadens Human Vaginal Flora Diversity: Genome Sequence and Description of Prevotella lascolaii sp. nov. Isolated from a Patient with Bacterial Vaginosis. | OMICS: A Journal of Integrative Biology | 22(3), page(s): 21-222 | 10.1089/omi.2017.0151 |
| Downes2007 | oral cavity | Prevotella maculosa | 2007 |
Downes J, Sutcliffe IC, Booth V, Wade WG. |
Prevotella maculosa sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 57(12), page(s): 2936-2939 | 10.1099/ijs.0.65281-0 |
| Sakamoto2005a | oral cavity | Prevotella multiformis | 2005 |
Sakamoto M, Huang Y, Umeda M, Ishikawa I, Benno Y. |
Prevotella multiformis sp. nov., isolated from human subgingival plaque. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 815-819 | 10.1099/ijs.0.63451-0 |
| Ueki2006a | summary, general characteristics, enzymes, metabolites, utilisation | Xylanibacter oryzae | 2006 |
Ueki A, Akasaka H, Suzuki D, Hattori S, Ueki K. |
Xylanibacter oryzae gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, xylanolytic bacterium isolated from rice-plant residue in flooded rice-field soil in Japan. | International Journal of Systematic and Evolutionary Microbiology | 56(9), page(s): 2215-2221 | 10.1099/ijs.0.64364-0 |
| Sakamoto2012a | summary, general characteristics, enzymes, metabolites, utilisation, genetics, taxonomy | Prevotella oryzae | 2012 |
Sakamoto M, Ohkuma M. |
Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella. | International Journal of Systematic and Evolutionary Microbiology | 62(11), page(s): 2637-2642 | 10.1099/ijs.0.038638-0 |
| Ueki2007 | summary, general characteristics, enzymes, metabolites, utilisation | Prevotella paludivivens | 2007 |
Ueki A, Akasaka H, Satoh A, Suzuki D, Ueki K. |
Prevotella paludivivens sp. nov., a novel strictly anaerobic, Gram-negative, hemicellulose-decomposing bacterium isolated from plant residue and rice roots in irrigated rice-field soil. | International Journal of Systematic and Evolutionary Microbiology | 57(8), page(s): 1803-1809 | 10.1099/ijs.0.64914-0 |
| Downes2010 | oral cavity | Prevotella saccharolytica | 2010 |
Downes J, Tanner ACR, Dewhirst FE, Wade WG. |
Prevotella saccharolytica sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 60(10), page(s): 2458-2461 | 10.1099/ijs.0.014720-0 |
| Tvrzova2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pseudomonas moraviensis, Pseudomonas vranovensis, Pseudomonas asplenii | 2006 |
Tvrzová L, Schumann P, Spröer C, Sedláček I, Páčová Z, Šedo O, Zdráhal Z, Steffen M, Lang E. |
Pseudomonas moraviensis sp. nov. and Pseudomonas vranovensis sp. nov., soil bacteria isolated on nitroaromatic compounds, and emended description of Pseudomonas asplenii. | International Journal of Systematic and Evolutionary Microbiology2006 | 56(11), page(s): 2657-2663 | 10.1099/ijs.0.63988-0 |
| vonNeubeck2016 | dairy foods | Pseudomonas helleri, Pseudomonas weihenstephanensis | 2016 |
von Neubeck M, Huptas C, Glück C, Krewinkel M, Stoeckel M, Stressler T, Fischer L, Hinrichs J, Scherer S, Wenning M. |
Pseudomonas helleri sp. nov. and Pseudomonas weihenstephanensis sp. nov., isolated from raw cow's milk. | International Journal of Systematic and Evolutionary Microbiology | 66(3), page(s): 1163-1173 | 10.1099/ijsem.0.000852 |
| Yabuuchi2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Sphingomonas wittichii | 2001 |
Yabuuchi E, Yamamoto H, Terakubo S, Okamura N, Naka T, Fujiwara N, Kobayashi K, Kosako Y, Hiraishi A. |
Proposal of Sphingomonas wittichii sp. nov. for strain RW1T, known as a dibenzo-p-dioxin metabolizer. | International Journal of Systematic and Evolutionary Microbiology | 51(2), page(s): 281-292 | 10.1099/00207713-51-2-281 |
| Kim2016a | summary, general characteristics, genetics, taxonomy | Sphingoaurantiacus polygranulatus, Sandarakinorhabdus limnophila, Rhizorhabdus argentea, Sphingomonas wittichii | 2016 |
Kim M, Kang O, Zhang Y, Ren L, Chang X, Jiang F, Fang C, Zheng C, Peng F. |
Sphingoaurantiacus polygranulatus gen. nov., sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of the genera Sandarakinorhabdus, Polymorphobacter and Rhizorhabdus and the species Sandarakinorhabdus limnophila, Rhizorhabdus argentea and Sphingomonas wittichii. | International Journal of Systematic and Evolutionary Microbiology | 66(1), page(s): 91-100 | 10.1099/ijsem.0.000677 |
| Collins1985 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Rikenella microfusus | 1985 |
Matthew D. Collins, Haroun N. Shah, Tomotari Mitsuoka |
Reclassification of Bacteroides microfusus (Kaneuchi and Mitsuoka) in a New Genus Rikenella, as Rikenella microfusus comb. nov. | Systematic and Applied Microbiology | 6(1), page(s): 79-81 | 10.1016/S0723-2020(85)80015-1 |
| Kaneuchi1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Bacteroides microfusus | 1978 |
Kaneuchi, C., and Mitsuoka, T. |
Bacteroides microfusus, a New Species from the Intestines of Calves, Chickens, and Japanese Quails. | International Journal of Systematic and Evolutionary Microbiology | 28(4), page(s): 478-481 | 10.1099/00207713-28-4-478 |
| Morita2008 | summary, general characteristics, enzymes, acid from carbohydrates | Sharpea azabuensis | 2008 |
Morita H, Shiratori C, Murakami M, Takami H, Toh H, Kato Y, Nakajima F, Takagi M, Akita H, Masaoka T, Hattori M. |
Sharpea azabuensis gen. nov., sp. nov., a Gram-positive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses. | International Journal of Systematic and Evolutionary Microbiology | 58(12), page(s): 2682-2686 | 10.1099/ijs.0.65543-0 |
| Xu2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Shewanella decolorationis | 2005 |
Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G. |
Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 363-368 | 10.1099/ijs.0.63157-0 |
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Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis | Hepatology Communications | 4(8), page(s): 1168-1182 | 10.1002/hep4.1537 |
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Gastrointestinal flora and gastrointestinal status in children with autism - comparisons to typical children and correlation with autism severity | BMC Gastroenterology | 11(22), page(s): 1-13 | 10.1186/1471-230X-11-22 |
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Aberrant intestinal microbiota in individuals with prediabetes | Diabetologia | 61(4), page(s): 810-820 | 10.1007/s00125-018-4550-1 |
| AlpizarRodriguez2019 | health, rheumatoid arthritis | Prevotella copri, Prevotella oralis, Prevotella oulora, Paraprevotella clara, Paraprevotella xylaniphila, Prevotella stercorea | 2019 |
Alpizar-Rodriguez D, Lesker TR, Gronow A, Gilbert B, Raemy E, Lamacchia C, Gabay C, Finckh A, Strowig T. |
Prevotella copri in individuals at risk for rheumatoid arthritis | Annals of the Rheumatic Diseases | 78(5), page(s): 590-593 | 10.1136/annrheumdis-2018-214514 |
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Arrieta MC, Arévalo A, Stiemsma L, Dimitriu P, Chico ME, Loor S, Vaca M, Boutin RCT, Morien E, Jin M, Turvey SE, Walter J, Parfrey LW, Cooper PJ, Finlay B. |
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Bajer L, Kverka M, Kostovcik M, Macinga P, Dvorak J, Stehlikova Z, Brezina J, Wohl P, Spicak J, Drastich P. |
Distinct gut microbiota profiles in patients with primary sclerosing cholangitis and ulcerative colitis | World Journal of Gastroenterology | 23(25), page(s): 4548-4558 | 10.3748/wjg.v23.i25.4548 |
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Real-time polymerase chain reaction quantification of specific butyrate-producing bacteria, Desulfovibrio and Enterococcus faecalis in the feces of patients with colorectal cancer | Journal of Gastroenterology and Hepatology | 23(8 Pt 1), page(s): 1298-1303 | 10.1111/j.1440-1746.2008.05490.x |
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Baxter NT, Ruffin MT 4th, Rogers MA, Schloss PD. |
Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions | Genome Medicine | 8(1), page(s): 37 | 10.1186/s13073-016-0290-3 |
| Bedarf2017 | health, Parkinson's disease | Akkermansia muciniphila, Alistipes shahii, Eubacterium biforme, Lacrimispora saccharolytica, Prevotella copri, Klebsiella varicola, Eubacterium rectale, Anaerobutyricum hallii, Lachnospira eligens | 2017 |
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Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson's disease patients | Genome Medicine | 9(1), page(s): 39 | 10.1186/s13073-017-0428-y |
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Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype Worsening | mSystems | 5(2), page(s): e00857-19 | 10.1128/mSystems.00857-19 |
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Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota | Inflammatory Bowel Diseases | 18(6), page(s): 1092-1100 | 10.1002/ibd.21864 |
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Differences in gut microbiota composition between obese and lean children: a cross-sectional study | Gut Pathogens | 5(1), page(s): 10 | 10.1186/1757-4749-5-10 |
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Bhute SS, Suryavanshi MV, Joshi SM, Yajnik CS, Shouche YS, Ghaskadbi SS. |
Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes | Frontiers in Microbiology | 8, page(s): 214 | 10.3389/fmicb.2017.00214 |
| Borgo2017 | health, anorexia nervosa | Methanobrevibacter smithii, Roseburia inulinivorans, Bacteroides uniformis, Roseburia faecis, Roseburia hominis, Roseburia intestinalis, Escherichia coli | 2017 |
Borgo F, Riva A, Benetti A, Casiraghi MC, Bertelli S, Garbossa S, Anselmetti S, Scarone S, Pontiroli AE, Morace G, Borghi E. |
Microbiota in anorexia nervosa: The triangle between bacterial species, metabolites and psychological tests | PLOS ONE | 12(6), page(s): e0179739 | 10.1371/journal.pone.0179739 |
| Borren2020 | health, IBD, inflammatory bowel disease | Faecalibacterium prausnitzii, Roseburia hominis, Ruminococcus gnavus, Dorea longicatena, Ruminococcus callidus, Ruminococcus lactaris, Ruminococcus bromii, Parabacteroides distasonis | 2020 |
Borren NZ, Plichta D, Joshi AD, Bonilla G, Peng V, Colizzo FP, Luther J, Khalili H, Garber JJ, Janneke van der Woude C, Sadreyev R, Vlamakis H, Xavier RJ, Ananthakrishnan AN. |
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Breban M, Tap J, Leboime A, Said-Nahal R, Langella P, Chiocchia G, Furet JP, Sokol H. |
Faecal microbiota study reveals specific dysbiosis in spondyloarthritis | Annals of the Rheumatic Diseases | 76(9), page(s): 1614-1622 | 10.1136/annrheumdis-2016-211064 |
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Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria | mSystems | 3(6), page(s): e00083-18 | 10.1128/mSystems.00083-18 |
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Kalyana Chakravarthy S, Jayasudha R, Ranjith K, Dutta A, Pinna NK, Mande SS, Sharma S, Garg P, Murthy SI, Shivaji S. |
Alterations in the gut bacterial microbiome in fungal Keratitis patients | PLOS ONE | 13(6), page(s): e0199640 | 10.1371/journal.pone.0199640 |
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Chen PC, Chien YW, Yang SC. |
The alteration of gut microbiota in newly diagnosed type 2 diabetic patients | Nutrition | 63-64, page(s): 51-56 | 10.1016/j.nut.2018.11.019 |
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Chen YH, Bai J, Wu D, Yu SF, Qiang XL, Bai H, Wang HN, Peng ZW. |
Association between fecal microbiota and generalized anxiety disorder: Severity and early treatment response | Journal of Affective Disorders | 259, page(s): 56-66 | 10.1016/j.jad.2019.08.014 |
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Chen J, Wang Q, Wang A, Lin Z. |
Structural and Functional Characterization of the Gut Microbiota in Elderly Women With Migraine | Frontiers in Cellular and Infection Microbiology | 9, page(s): 470 | 10.3389/fcimb.2019.00470 |
| Chen2020a | health, hepatitis B infection | Bifidobacterium longum subsp. Longum, Pauljensenia odontolyticus, Fusobacterium periodonticum, Muribaculum intestinale, Prevotellamassilia timonensis, Alistipes shahii, Alistipes onderdonkii, Alistipes obesi, Bacteroides eggerthii, Barnesiella intestinihominis, Kineothrix alysoides, Howardella ureilytica, Parasporobacterium paucivorans, Solobacterium moorei, Lachnoanaerobaculum saburreum, Anaerotruncus colihominis, Peptostreptococcus stomatis, Gemella haemolysans, Pseudoflavonifractor capillosus, Ruminococcus callidus, Streptococcus anginosus, Anaerostipes hadrus, Campylobacter concisus, Campylobacter showae, Eikenella corrodens, Succinivibrio dextrinosolvens, Leptotrichia hofstadii, Leptotrichia hongkongensis, Prevotella conceptionensis, Butyricimonas paravirosa, Limosilactobacillus mucosae, Okadaella gastrococcus, Ligilactobacillus salivarius, Intestinimonas massiliensis, Paludicola psychrotolerans, Dialister succinatiphilus | 2020 |
Chen Z, Xie Y, Zhou F, Zhang B, Wu J, Yang L, Xu S, Stedtfeld R, Chen Q, Liu J, Zhang X, Xu H, Ren J. |
Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease | Frontiers in Microbiology | 11(Article 383), page(s): 1-15 | 10.3389/fmicb.2020.00383 |
| Chua2018 | health, allergic diseases | Blautia luti, Cellulosilyticum lentocellum, Clostridium aminophilum, Enterocloster clostridioformis, Clostridium polysaccharolyticum, Lacrimispora sphenoides, Robinsoniella peoriensis, Roseburia hominis, Roseburia inulinivorans, Ruminococcus gnavus, Syntrophococcus sucromutans, Tyzzerella nexilis | 2018 |
Chua HH, Chou HC, Tung YL, Chiang BL, Liao CC, Liu HH, Ni YH. |
Intestinal Dysbiosis Featuring Abundance of Ruminococcus gnavus Associates With Allergic Diseases in Infants | Gastroenterology | 154(1), page(s): 154-167 | 10.1053/j.gastro.2017.09.006 |
| Chua2020 | health, leukemia treatment | Bacteroides fragilis, Bacteroides uniformis | 2020 |
Chua LL, Rajasuriar R, Lim YAL, Woo YL, Loke P, Ariffin H. |
Temporal changes in gut microbiota profile in children with acute lymphoblastic leukemia prior to commencement-, during-, and post-cessation of chemotherapy | BMC Cancer | 20(1), page(s): 151 | 10.1186/s12885-020-6654-5 |
| Ciocan2018 | health, alcholic liver disease | Aquabacterium parvum, Haemophilus parainfluenzae, Klebsiella pneumoniae, Ruminococcus albus, Muribaculum intestinale, Raoultibacter massiliensis | 2018 |
Ciocan D, Rebours V, Voican CS, Wrzosek L, Puchois V, Cassard AM, Perlemuter G. |
Characterization of intestinal microbiota in alcoholic patients with and without alcoholic hepatitis or chronic alcoholic pancreatitis | Scientific Reports | 8(1), page(s): 4822 | 10.1038/s41598-018-23146-3 |
| Colonetti2019 | health, liver disease | Anaerobutyricum hallii, Ruminococcus gnavus | 2019 |
Colonetti K, Bento Dos Santos B, Nalin T, Moura de Souza CF, Triplett EW, Dobbler PT, Schwartz IVD, Roesch LFW. |
Hepatic glycogen storage diseases are associated to microbial dysbiosis | PLOS ONE | 14(4), page(s): e0214582 | 10.1371/journal.pone.0214582 |
| Coretti2018 | health, autism | Bifidobacterium longum subsp. longum, Eggerthella lenta, Faecalibacterium prausnitzii, Parabacteroides distasonis, Bacteroides uniformis, Bacteroides caccae, Collinsella aerofaciens, Abiotrophia defectiva, Actinomyces odontolyticus, Anaerostipes hadrus, Bacteroides dorei, Bacteroides fragilis, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides vulgatus, Bacteroides xylanisolvens, Blautia luti, Blautia wexlerae, Clostridium bartlettii, Clostridium thermocellum, Eubacterium eligens, Eubacterium rectale, Flavonifractor plautii, Fusicatenibacter saccharivorans, Haemophilus parainfluenzae, Oscillibacter valericigenes, Ruminococcus obeum, Ruminococcus torques, Salmonella enterica, Streptococcus salivarius | 2018 |
Coretti L, Paparo L, Riccio MP, Amato F, Cuomo M, Natale A, Borrelli L, Corrado G, Comegna M, Buommino E, Castaldo G, Bravaccio C, Chiariotti L, Berni Canani R, Lembo F. |
Gut Microbiota Features in Young Children With Autism Spectrum Disorders | Frontiers in Microbiology | 9, page(s): 3146 | 10.3389/fmicb.2018.03146 |
| Cree2016 | health, neuromyelitis optica | Blautia producta, Clostridium perfringens, Prevotella copri, Prevotella melaninogenica, Treponema socranskii | 2016 |
Cree BA, Spencer CM, Varrin-Doyer M, Baranzini SE, Zamvil SS. |
Gut microbiome analysis in neuromyelitis optica reveals overabundance of Clostridium perfringens | Annals of Neurology | 80(3), page(s): 443-447 | 10.1002/ana.24718 |
| Cui2018 | health, coronary disease | Faecalibacterium prausnitzii, Ruminococcus gnavus | 2018 |
Cui X, Ye L, Li J, Jin L, Wang W, Li S, Bao M, Wu S, Li L, Geng B, Zhou X, Zhang J, Cai J. |
Metagenomic and metabolomic analyses unveil dysbiosis of gut microbiota in chronic heart failure patients | Scientific Reports | 8(1), page(s): 635 | 10.1038/s41598-017-18756-2 |
| DaSilva2018 | health, obesity, NAFLD, nonalcoholic fatty liver disease | Faecalibacterium prausnitzii | 2018 |
Da Silva HE, Teterina A, Comelli EM, Taibi A, Arendt BM, Fischer SE, Lou W, Allard JP. |
Nonalcoholic fatty liver disease is associated with dysbiosis independent of body mass index and insulin resistance | Scientific Reports | 8(1), page(s): 1466 | 10.1038/s41598-018-19753-9 |
| DavisRichardson2014 | health, type 1 diabetes | Phocaeicola dorei, Phocaeicola vulgatus | 2014 |
Davis-Richardson AG, Ardissone AN, Dias R, Simell V, Leonard MT, Kemppainen KM, Drew JC, Schatz D, Atkinson MA, Kolaczkowski B, Ilonen J, Knip M, Toppari J, Nurminen N, Hyöty H, Veijola R, Simell T, Mykkänen J, Simell O, Triplett EW. |
Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes | Frontiers in Microbiology | 5, page(s): 678 | 10.3389/fmicb.2014.00678 |
| DeAngelis2013 | health, autism | Akkermansia muciniphila, Alistipes indistinctus, Alistipes onderdonkii, Alistipes putredinis, Alistipes shahii, Bacteroides fragilis, Bacteroides intestinalis, Bacteroides ovatus, Bacteroides uniformis, Barnesiella intestinihominis, Bifidobacterium adolescentis, Bifidobacterium catenulatum, Blautia faecis, Blautia obeum, Clostridium aminophilum, Clostridium methylpentosum, Clostridium symbiosum, Coprococcus eutactus, Enterobacter hormaechei, Enterocloster asparagiformis, Enterocloster bolteae, Enterococcus casseliflavus, Escherichia coli, Eubacterium coprostanoligenes, Eubacterium siraeum, Eubacterium ventriosum, Faecalibacterium prausnitzii, Flavonifractor plautii, Intestinibacter bartlettii, Lachnospira eligens, Lachnospira pectinoschiza, Odoribacter splanchnicus, Parasutterella excrementihominis, Phocaeicola coprocola, Phocaeicola massiliensis, Phocaeicola vulgatus, Prevotella copri, Roseburia faecis, Roseburia hominis, Roseburia intestinalis, Roseburia Inulinivorans, Ruminococcus gnavus, Sarcina ventriculi, Sporobacter termitidis, Streptococcus salivarius, Streptococcus thermophiles, Turicibacter sanguinis, Tyzzerella nexilis | 2013 |
De Angelis M, Piccolo M, Vannini L, Siragusa S, De Giacomo A, Serrazzanetti DI, Cristofori F, Guerzoni ME, Gobbetti M, Francavilla R. |
Fecal microbiota and metabolome of children with autism and pervasive developmental disorder not otherwise specified | PLOS ONE | 8(10), page(s): e76993 | 10.1371/journal.pone.0076993 |
| Debyser2016 | health, cystic fibrosis | Acidaminococcus fermentans, Alistipes finegoldii, Alistipes putredinis, Anaerobutyricum hallii, Bacteroides fragilis, Bacteroides stercoris, Bacteroides uniformis, Bifidobacterium adolescentis, Bifidobacterium bifidum, Bifidobacterium longum subsp. Longum, Blautia obeum, Clostridioides difficile, Clostridium perfringens, Collinsella aerofaciens, Enterocloster clostridioformis, Eubacterium rectale, Eubacterium siraeum, Faecalibacterium prausnitzii, Fusobacterium mortiferum, Intestinibacter bartlettii, Lachnospira eligens, Ligilactobacillus ruminis, Mitsuokella multacida, Parabacteroides distasonis, Parabacteroides merdae, Phascolarctobacterium succinatutens, Phocaeicola dorei, Phocaeicola vulgatus, Prevotella copri, Prevotella stercorea, Roseburia intestinalis, Roseburia inulinivorans, Ruminococcus bromii, Ruminococcus gnavus, Ruminococcus lactaris, Ruminococcus torques, Subdoligranulum variabile, Tyzzerella nexilis | 2016 |
Debyser G, Mesuere B, Clement L, Van de Weygaert J, Van Hecke P, Duytschaever G, Aerts M, Dawyndt P, De Boeck K, Vandamme P, Devreese B. |
Faecal proteomics: A tool to investigate dysbiosis and inflammation in patients with cystic fibrosis | Journal of Cystic Fibrosis | 15(2), page(s): 242-250 | 10.1016/j.jcf.2015.08.003 |
| deGoffau2014 | health, type 1 diabetes | Streptococcus mitis, Eubacterium rectale, Lactiplantibacillus plantarum, Flavonifractor plautii, Lachnospira pectinoschiza, Bacteroides fragilis, Bacteroides ovatus, Blautia obeum, Dorea formicigenerans, Coprococcus eutactus, Thermoclostridium stercorarium | 2014 |
de Goffau MC, Fuentes S, van den Bogert B, Honkanen H, de Vos WM, Welling GW, Hyöty H, Harmsen HJ. |
Aberrant gut microbiota composition at the onset of type 1 diabetes in young children | Diabetologia | 57(8), page(s): 1569-1577 | 10.1007/s00125-014-3274-0 |
| DeLaCochetiere2004 | health, necrotizing enterocolitis | Clostridium perfringens, Staphylococcus epidermidis, Staphylococcus aureus subsp. aureus, Klebsiella oxytoca | 2004 |
de la Cochetiere MF, Piloquet H, des Robert C, Darmaun D, Galmiche JP, Roze JC. |
Early intestinal bacterial colonization and necrotizing enterocolitis in premature infants: the putative role of Clostridium | Pediatric Research | 56(3), page(s): 366-370 | 10.1203/01.PDR.0000134251.45878.D5 |
| DelChierico2017 | health, obesity, NAFLD, nonalcoholic fatty liver disease | Cutibacterium acnes | 2017 |
Del Chierico F, Nobili V, Vernocchi P, Russo A, De Stefanis C, Gnani D, Furlanello C, Zandonà A, Paci P, Capuani G, Dallapiccola B, Miccheli A, Alisi A, Putignani L. |
Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled by an integrated meta-omics-based approach | Hepatology | 65(2), page(s): 451-464 | 10.1002/hep.28572 |
| Demirci2019 | health, asthma | Akkermansia muciniphila, Faecalibacterium prausnitzii | 2019 |
Demirci M, Tokman HB, Uysal HK, Demiryas S, Karakullukcu A, Saribas S, Cokugras H, Kocazeybek BS. |
Reduced Akkermansia muciniphila and Faecalibacterium prausnitzii levels in the gut microbiota of children with allergic asthma | Allergology and Immunopathology | 47(4), page(s): 365-371 | 10.1016/j.aller.2018.12.009 |
| DePalma2010 | health, coeliac disease | Faecalibacterium prausnitzii, Hathewaya histolytica, Romboutsia lituseburensis, Escherichia coli | 2010 |
De Palma G, Nadal I, Medina M, Donat E, Ribes-Koninckx C, Calabuig M, Sanz Y. |
Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children | BMC Microbiology | 10(63), page(s): 1-7 | 10.1186/1471-2180-10-63 |
| Dicksved2008 | health, Crohn's disease | Bacteroides ovatus, Bacteroides uniformis, Phocaeicola vulgatus | 2008 |
Dicksved J, Halfvarson J, Rosenquist M, Järnerot G, Tysk C, Apajalahti J, Engstrand L, Jansson JK. |
Molecular analysis of the gut microbiota of identical twins with Crohn's disease | The ISME Journal | 2(7), page(s): 716-721 | 10.1038/ismej.2008.37 |
| Dong2020 | health, NAFLD, nonalcoholic fatty liver disease | Prevotella copri, Haemophilus parainfluenzae, Faecalibacterium prausnitzii, Bacteroides ovatus, Megasphaera massiliensis, Alistipes finegoldii | 2020 |
Dong TS, Katzka W, Lagishetty V, Luu K, Hauer M, Pisegna J, Jacobs JP. |
A Microbial Signature Identifies Advanced Fibrosis in Patients with Chronic Liver Disease Mainly Due to NAFLD | Scientific Reports | 10(1), page(s): 2771 | 10.1038/s41598-020-59535-w |
| Dong2020a | health, precocious puberty | Anaerotignum lactatifermentans, Barnesiella intestinihominis, Clostridium disporicum, Clostridium leptum, Clostridium sporosphaeroides, Coprobacter fastidiosus, Coprococcus eutactus, Eubacterium coprostanoligenes Gemmiger formicilis, Phocaeicola coprocola, Phocaeicola plebeius, Psychrobacter fulvigenes, Roseburia Inulinivorans, Ruminococcus bromii, Ruminococcus callidus, Ruminococcus gnavus | 2020 |
Dong G, Zhang J, Yang Z, Feng X, Li J, Li D, Huang M, Li Y, Qiu M, Lu X, Liu P, Zeng Y, Xu X, Luo X, Dai W, Gong S. |
The Association of Gut Microbiota With Idiopathic Central Precocious Puberty in Girls | Frontiers in Endocrinology | 10, page(s): 941 | 10.3389/fendo.2019.00941 |
| Doumatey2020 | health, type 2 diabetes | Cellulosilyticum ruminicola, Clostridium butyricum, Clostridium paraputrificum, Desulfovibrio piger, Ruminococcus lactaris, Terrisporobacter glycolicus | 2020 |
Doumatey AP, Adeyemo A, Zhou J, Lei L, Adebamowo SN, Adebamowo C, Rotimi CN. |
Gut Microbiome Profiles Are Associated With Type 2 Diabetes in Urban Africans | Frontiers in Cellular and Infection Microbiology | 10, page(s): 63 | 10.3389/fcimb.2020.00063 |
| Dubinkina2017 | health, alcoholic liver disease, compilation | Bifidobacterium breve, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Citrobacter koseri, Klebsiella pneumoniae, Lactobacillus crispatus, Lactococcus lactis subsp. lactis, Ligilactobacillus salivarius, Ligilactobacillus salivarius, Limosilactobacillus antri, Streptococcus mutans, Streptococcus thermophiles | 2017 |
Dubinkina VB, Tyakht AV, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitsky EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM. |
Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease | Microbiome | 5(1), page(s): 141 | 10.1186/s40168-017-0359-2 |
| ElMouzan2018 | health, Crohn's disease | Anaerobutyricum hallii, Bacteroides caccae, Bacteroides clarus, Bacteroides nordii, Bifidobacterium catenulatum, Clostridium disporicum, Clostridium perfringens, Eisenbergiella tayi, Escherichia coli, Eubacterium siraeum, Fusobacterium nucleatum, Hungatella xylanolytica, Intestinibacter bartlettii, Psychrobacter pulmonis, Roseburia Inulinivorans, Ruminococcus flavefaciens, Ruminococcus gnavus, Streptococcus salivarius | 2018 |
El Mouzan MI, Winter HS, Assiri AA, Korolev KS, Al Sarkhy AA, Dowd SE, Al Mofarreh MA, Menon R. |
Microbiota profile in new-onset pediatric Crohn's disease: data from a non-Western population | Gut Pathogens | 10(49), page(s): 1-10 | 10.1186/s13099-018-0276-3 |
| Eppinga2016 | health, IBD, inflammatory bowel disease, psoriasis | Faecalibacterium prausnitzii, Escherichia coli | 2016 |
Eppinga H, Sperna Weiland CJ, Thio HB, van der Woude CJ, Nijsten TE, Peppelenbosch MP, Konstantinov SR. |
Similar Depletion of Protective Faecalibacterium prausnitzii in Psoriasis and Inflammatory Bowel Disease, but not in Hidradenitis Suppurativa | Journal of Crohn's and Colitis | 10(9), page(s): 1067-1075 | 10.1093/ecco-jcc/jjw070 |
| Fassatoui2019 | health, type 1 diabetes, type 2 diabetes | Akkermansia muciniphila, Faecalibacterium prausnitzii | 2019 |
Fassatoui M, Lopez-Siles M, Díaz-Rizzolo DA, Jmel H, Naouali C, Abdessalem G, Chikhaoui A, Nadal B, Jamoussi H, Abid A, Gomis R, Abdelhak S, Martinez-Medina M, Kefi R. |
Gut microbiota imbalances in Tunisian participants with type 1 and type 2 diabetes mellitus | Bioscience Reports | 39(6), page(s): BSR20182348 | 10.1042/BSR20182348 |
| Feng2019a | health, thyroid carcinoma | Anaerobutyricum hallii, Eubacterium coprostanoligenes, Eubacterium ruminantium, Ruminococcus gnavus | 2019 |
Feng J, Zhao F, Sun J, Lin B, Zhao L, Liu Y, Jin Y, Li S, Li A, Wei Y. |
Alterations in the gut microbiota and metabolite profiles of thyroid carcinoma patients | International Journal of Cancer | 144(11), page(s): 2728-2745 | 10.1002/ijc.32007 |
| Finegold2002 | health, autism | Anaerotignum lactatifermentans, Bacteroides ovatus, Campylobacter concisus, Campylobacter gracilis, Clostridioides difficile, Clostridium aminobutyricum, Clostridium butyricum, Clostridium cocleatum, Clostridium disporicum, Clostridium innocuum, Clostridium paraputrificum, Clostridium perfringens, Clostridium roseum, Clostridium scindens, Clostridium spiroforme, Clostridium subterminale, Clostridium symbiosum, Clostridium tertium, Corynebacterium singulare, Cutibacterium acnes, Enterocloster clostridioformis, Enterococcus faecium, Erysipelatoclostridium ramosum, Flavonifractor plautii, Neisseria perflava, Paeniclostridium ghonii, Paeniclostridium sordellii, Paraclostridium bifermentans, Pauljensenia odontolyticus, Ruminococcus albus, Ruminococcus flavefaciens, Ruminococcus gnavus, Ruminococcus lactaris, Ruminococcus torques, Sporolactobacillus nakayamae subsp. racemicus, Staphylococcus aureus subsp. aureus, Streptococcus intermedius, Streptococcus parasanguinis, Streptococcus salivarius, Terrisporobacter glycolicus, Tyzzerella nexilis | 2002 |
Finegold SM, Molitoris D, Song Y, Liu C, Vaisanen ML, Bolte E, McTeague M, Sandler R, Wexler H, Marlowe EM, Collins MD, Lawson PA, Summanen P, Baysallar M, Tomzynski TJ, Read E, Johnson E, Rolfe R, Nasir P, Shah H, Haake DA, Manning P, Kaul A. |
Gastrointestinal microflora studies in late-onset autism | Clinical Infectious Diseases | 35(Suppl 1), page(s): S6-S16 | 10.1086/341914 |
| Finegold2010 | health, autism | Alistipes onderdonkii, Bacteroides caccae, Bacteroides stercoris, Bifidobacterium adolescentis, Bifidobacterium angulatum, Bifidobacterium animalis, Bifidobacterium bifidum, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Bifidobacterium pseudocatenulatum, Bifidobacterium pseudolongum, Bifidobacterium pullorum subsp. saeculare, Clostridium leptum, Clostridium methylpentosum, Desulfovibrio desulfuricans, Desulfovibrio intestinalis, Desulfovibrio piger, Dialister invisus, Enterocloster aldenensis, Eubacterium ruminantium, Flavonifractor plautii, Hungatella hathewayi, Lachnospira eligens, Parabacteroides distasonis, Phascolarctobacterium faecium, Phocaeicola vulgatus, Prevotella oulorum, Roseburia intestinalis, Sporobacter termitidis | 2010 |
Finegold SM, Dowd SE, Gontcharova V, Liu C, Henley KE, Wolcott RD, Youn E, Summanen PH, Granpeesheh D, Dixon D, Liu M, Molitoris DR, Green JA 3rd. |
Pyrosequencing study of fecal microflora of autistic and control children | Anaerobe | 16(4), page(s): 444-453 | 10.1016/j.anaerobe.2010.06.008 |
| Finegold2012 | health, autism | Desulfovibrio intestinalis, Desulfovibrio desulfuricans, Desulfovibrio piger, Phocaeicola vulgatus | 2012 |
Finegold SM, Downes J, Summanen PH. |
Microbiology of regressive autism | Anaerobe | 18(2), page(s): 260-262 | 10.1016/j.anaerobe.2011.12.018 |
| Fischer2015 | health, colitis | Akkermansia muciniphila | 2015 |
Fischer H, Holst E, Karlsson F, Benoni C, Toth E, Olesen M, Lindén M, Sjöberg K. |
Altered microbiota in microscopic colitis | Gut | 64(7), page(s): 1185-1186 | 10.1136/gutjnl-2014-308956 |
| Fujimoto2013 | health, Crohn's disease | Faecalibacterium prausnitzii, Bilophila wadsworthia, | 2013 |
Fujimoto T, Imaeda H, Takahashi K, Kasumi E, Bamba S, Fujiyama Y, Andoh A. |
Decreased abundance of Faecalibacterium prausnitzii in the gut microbiota of Crohn's disease | Journal of Gastroenterology and Hepatology | 28(4), page(s): 613-619 | 10.1111/jgh.12073 |
| Fukugaiti2015 | health, colorectal cancer | Clostridioides difficile, Fusobacterium nucleatum, Porphyromonas gingivalis, Prevotella intermedia, Clostridium perfringens, Bacteroides fragilis, Phocaeicola vulgatus, Parabacteroides distasonis, Escherichia coli | 2015 |
Fukugaiti MH, Ignacio A, Fernandes MR, Ribeiro Júnior U, Nakano V, Avila-Campos MJ. |
High occurrence of Fusobacterium nucleatum and Clostridium difficile in the intestinal microbiota of colorectal carcinoma patients | Brazilian Journal of Microbiology | 46(4), page(s): 1135-1140 | 10.1590/S1517-838246420140665 |
| Furet2010 | health, obesity, bariatric surgery | Faecalibacterium prausnitzii, Escherichia coli | 2010 |
Furet JP, Kong LC, Tap J, Poitou C, Basdevant A, Bouillot JL, Mariat D, Corthier G, Doré J, Henegar C, Rizkalla S, Clément K. |
Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers | Diabetes | 59(12), page(s): 3049-3057 | 10.2337/db10-0253 |
| GallardoBecerra2020 | health, obesity, metabolic syndrome | Bifidobacterium adolescentis, Collinsella aerofaciens, Faecalibacterium prausnitzii, Bifidobacterium adolscentis, Parabacteroides distasonis | 2020 |
Gallardo-Becerra L, Cornejo-Granados F, García-López R, Valdez-Lara A, Bikel S, Canizales-Quinteros S, López-Contreras BE, Mendoza-Vargas A, Nielsen H, Ochoa-Leyva A. |
Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children | Microbial Cell Factories | 19(1), page(s): 61 | 10.1186/s12934-020-01319-y |
| Ganji2016 | health, IBS, irritable bowel syndrome | Escherichia coli | 2016 |
Ganji L, Alebouyeh M, Shirazi MH, Eshraghi SS, Mirshafiey A, Ebrahimi Daryani N, Zali MR. |
Dysbiosis of fecal microbiota and high frequency of Citrobacter, Klebsiella spp., and Actinomycetes in patients with irritable bowel syndrome and gastroenteritis | Gastroenterology and Hepatology | 9(4), page(s): 325-330 | PMID: 27895859 |
| Gargari2018 | health, primary hyperlipidemia | Akkermansia muciniphila, Faecalibacterium prausnitzii, Bacteroides caccae, Bacteroides eggerthii, Bacteroides ovatus, Blautia producta, Coprobacillus cateniformis, Lacticaseibacillus zeae, Mucispirillum schaedleri, Parabacteroides distasonis, Roseburia faecis, Veillonella parvula | 2018 |
Gargari G, Deon V, Taverniti V, Gardana C, Denina M, Riso P, Guardamagna O, Guglielmetti S. |
Evidence of dysbiosis in the intestinal microbial ecosystem of children and adolescents with primary hyperlipidemia and the potential role of regular hazelnut intake | FEMS Microbial Ecology | 94(5), page(s): 1-11 | 10.1093/femsec/fiy045 |
| Ghavami2018 | health, IBD, inflammatory bowel disease | Methanobrevibacter smithii | 2018 |
Ghavami SB, Rostami E, Sephay AA, Shahrokh S, Balaii H, Aghdaei HA, Zali MR. |
Alterations of the human gut Methanobrevibacter smithii as a biomarker for inflammatory bowel diseases | Microbial Pathogenesis | 117, page(s): 285-289 | 10.1016/j.micpath.2018.01.029 |
| Gigliucci2018 | health, STEC infection | Bifidobacterium longum subsp. longum | 2018 |
Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S. |
Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients | Frontiers in Cellular and Infection Microbiology | 8(25), page(s): 1-12 | 10.3389/fcimb.2018.00025 |
| Giongo2011 | health, type 1 diabetes | Alistipes onderdonkii, Bacteroides caccae, Bacteroides fragilis, Bacteroides galacturonicus, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bacteroides uniformis, Clostridium innocuum, Enterocloster aldenensis, Escherichia coli, Eubacterium rectale, Faecalibacterium prausnitzii, Flavonifractor plautii, Granulicatella para-adiacens, Haemophilus parainfluenzae, Hungatella hathewayi, Lachnospira eligens, Lacticaseibacillus rhamnosus, Odoribacter splanchnicus, Parabacteroides distasonis, Parasutterella excrementihominis, Phocaeicola dorei, Phocaeicola vulgatus, Ruminococcus bromii, Ruminococcus gnavus, Streptococcus salivarius, Veillonella atypica, Veillonella dispar | 2011 |
Giongo A, Gano KA, Crabb DB, Mukherjee N, Novelo LL, Casella G, Drew JC, Ilonen J, Knip M, Hyöty H, Veijola R, Simell T, Simell O, Neu J, Wasserfall CH, Schatz D, Atkinson MA, Triplett EW. |
Toward defining the autoimmune microbiome for type 1 diabetes | The ISME Journal | 5(1), page(s): 82-91 | 10.1038/ismej.2010.92 |
| Gong2020 | health, glaucoma | Escherichia coli, Phocaeicola plebeius | 2020 |
Gong H, Zhang S, Li Q, Zuo C, Gao X, Zheng B, Lin M. |
Gut microbiota compositional profile and serum metabolic phenotype in patients with primary open-angle glaucoma | Experimental Eye Research | 191, page(s): 107921 | 10.1016/j.exer.2020.107921 |
| Graspeuntner2018 | health, sepsis | Staphylococcus epidermidis, Streptococcus pyogenes, Staphylococcus haemolyticus, Staphylococcus hominis, Staphylococcus aureus subsp. aureus, Escherichia coli | 2018 |
Graspeuntner S, Waschina S, Künzel S, Twisselmann N, Rausch TK, Cloppenborg-Schmidt K, Zimmermann J, Viemann D, Herting E, Göpel W, Baines JF, Kaleta C, Rupp J, Härtel C, Pagel J. |
Gut Dysbiosis With Bacilli Dominance and Accumulation of Fermentation Products Precedes Late-onset Sepsis in Preterm Infants | Clinical Infectious Diseases | 69(2), page(s): 268-277 | 10.1093/cid/ciy882 |
| Grat2016 | health, cirrhosis, liver cancer | Escherichia coli | 2016 |
Grąt M, Wronka KM, Krasnodębski M, Masior Ł, Lewandowski Z, Kosińska I, Grąt K, Stypułkowski J, Rejowski S, Wasilewicz M, Gałęcka M, Szachta P, Krawczyk M. |
Profile of Gut Microbiota Associated With the Presence of Hepatocellular Cancer in Patients With Liver Cirrhosis | Transplantation Proceedings | 48(5), page(s): 1687-1691 | 10.1016/j.transproceed.2016.01.077 |
| Gryp2020 | health, kidney disease | Akkermansia muciniphila, Atlantibacter hermannii, Bacteroides cellulosilyticus, Bacteroides fragilis, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bifidobacterium animalis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Bifidobacterium pseudocatenulatum, Butyricicoccus faecihominis, Butyricicoccus pullicaecorum, Citrobacter freundii, Clostridioides difficile, Clostridium sporogenes, Clostridium tertium, Enterobacter cloacae, Enterococcus durans, Enterococcus faecalis, Enterococcus faecium, Escherichia coli, Escherichia fergusonii, Faecalibacterium prausnitzii, Klebsiella oxytoca, Lacticaseibacillus paracasei, Lacticaseibacillus rhamnosus, Lactobacillus acidophilus, Lactobacillus buchneri subsp. buchneri, Lactobacillus gasseri, Lactobacillus jensenii, Limosilactobacillus fermentum, Parabacteroides goldsteinii, Paraclostridium bifermentans, Phocaeicola massiliensis, Phocaeicola vulgatus, Pseudescherichia vulneris, Roseburia faecis, Roseburia hominis, Shigella boydii, Shigella flexneri, Shigella sonnei, Staphylococcus hominis, Streptococcus mutans, Streptococcus parasanguinis, Streptococcus pneumoniae, Streptococcus salivarius, Yersinia enterocolitica subsp. enterocolitica | 2020 |
Gryp T, Huys GRB, Joossens M, Van Biesen W, Glorieux G, Vaneechoutte M. |
Isolation and Quantification of Uremic Toxin Precursor-Generating Gut Bacteria in Chronic Kidney Disease Patients | International Journal of Molecular Sciences | 21(6), page(s): 1986 | 10.3390/ijms21061986 |
| Gu2020 | health, COVID-19 | Anaerobutyricum hallii | 2020 |
Silan Gu, Yanfei Chen, Zhengjie Wu, Yunbo Chen, Hainv Gao, Longxian Lv, Feifei Guo, Xuewu Zhang, Rui Luo, Chenjie Huang, Haifeng Lu, Beiwen Zheng, Jiaying Zhang, Ren Yan, Hua Zhang, Huiyong Jiang, Qiaomai Xu, Jing Guo, Yiwen Gong, Lingling Tang, Lanjuan Li |
Alterations of the gut microbiota in patients with COVID-19 or H1N1 Influenza | Clinical Infectious Diseases | 71(10), page(s): 2669–2678 | 10.1093/cid/ciaa709 |
| Song2016 | health, atopic dermatitis | Faecalibacterium prausnitzii | 2016 |
Song H, Yoo Y, Hwang J, Na YC, Kim HS. |
Faecalibacterium prausnitzii subspecies-level dysbiosis in the human gut microbiome underlying atopic dermatitis | Journal of Allergy and Clinical Immunology | 137(3), page(s): 852-860 | 10.1016/j.jaci.2015.08.021 |
| Hasegawa2015 | health, Parkinson's Disease | Bacteroides fragilis, Blautia coccoides, Clostridium leptum | 2015 |
Hasegawa S, Goto S, Tsuji H, Okuno T, Asahara T, Nomoto K, Shibata A, Fujisawa Y, Minato T, Okamoto A, Ohno K, Hirayama M. |
Intestinal Dysbiosis and Lowered Serum Lipopolysaccharide-Binding Protein in Parkinson's Disease | PLOS ONE | 10(11), page(s): e0142164 | 10.1371/journal.pone.0142164 |
| Hayden2020 | health, cystic fibrosis | Akkermansia muciniphila, Anaerofustis stercorihominis, Anaerostipes hadrus, Anaerotruncus colihominis, Bacteroides uniformis, Clostridium perfringens, Clostridium symbiosum, Faecalibacterium prausnitzii, Roseburia hominis, Roseburia intestinalis, Roseburia Inulinivorans | 2020 |
Hayden HS, Eng A, Pope CE, Brittnacher MJ, Vo AT, Weiss EJ, Hager KR, Martin BD, Leung DH, Heltshe SL, Borenstein E, Miller SI, Hoffman LR. |
Fecal dysbiosis in infants with cystic fibrosis is associated with early linear growth failure | Nature Medicine | 26(2), page(s): 215-221 | 10.1038/s41591-019-0714-x |
| Hedin2014 | health, Crohn's disease | Bifidobacterium adolescentis, Faecalibacterium prausnitzii, Bifidobacterium adolescentis, Bifidobacterium longum subsp. longum, Escherichia coli | 2014 |
Hedin CR, McCarthy NE, Louis P, Farquharson FM, McCartney S, Taylor K, Prescott NJ, Murrells T, Stagg AJ, Whelan K, Lindsay JO. |
Altered intestinal microbiota and blood T cell phenotype are shared by patients with Crohn's disease and their unaffected siblings | Gut | 63(10), page(s): 1578-1586 | 10.1136/gutjnl-2013-306226 |
| Hedin2015 | health, Crohn's disease | Bacteroides uniformis, Blautia producta, Coprococcus eutactus, Escherichia coli, Escherichia fergusonii, Eubacterium rectale, Faecalibacterium prausnitzii, Oscillospira guillermondii, Phocaeicola dorei, Phocaeicola vulgatus, Roseburia faecis, Ruminococcus gnavus, Shigella dysenteriae, Shigella flexneri, Sutterella wadsworthensis | 2015 |
Hedin C, van der Gast CJ, Rogers GB, Cuthbertson L, McCartney S, Stagg AJ, Lindsay JO, Whelan K. |
Siblings of patients with Crohn's disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities | Gut | 65(6), page(s): 944-953 | 10.1136/gutjnl-2014-308896 |
| Heidarian2019 | health, IBD, inflammatory bowel disease | Faecalibacterium prausnitzii, Mycobacterium avium subsp. paratuberculosis, Helicobacter pylori, Clostridioides difficile, Klebsiella pneumoniae | 2019 |
Heidarian F, Alebouyeh M, Shahrokh S, Balaii H, Zali MR. |
Altered fecal bacterial composition correlates with disease activity in inflammatory bowel disease and the extent of IL8 induction | Current Research in Translational Medicine | 67(2), page(s): 41-50 | 10.1016/j.retram.2019.01.002 |
| Hevia2016 | health, asthma | Bifidobacterium adolescentis, Bifidobacterium longum subsp. longum, Bifidobacterium breve, Bifidobacterium bifidum | 2016 |
Hevia A, Milani C, López P, Donado CD, Cuervo A, González S, Suárez A, Turroni F, Gueimonde M, Ventura M, Sánchez B, Margolles A. |
Allergic Patients with Long-Term Asthma Display Low Levels of Bifidobacterium adolescentis | PLOS ONE | 11(2), page(s): e0147809 | 10.1371/journal.pone.0147809 |
| Hoen2018 | health, arsenic exposure | Pseudoramibacter alactolyticus | 2018 |
Hoen AG, Madan JC, Li Z, Coker M, Lundgren SN, Morrison HG, Palys T, Jackson BP, Sogin ML, Cottingham KL, Karagas MR. |
Sex-specific associations of infants' gut microbiome with arsenic exposure in a US population | Scientific Reports | 8(1), page(s): 12627 | 10.1038/s41598-018-30581-9 |
| Hoffman2014 | health, cystic fibrosis | Akkermansia muciniphila, Alistipes putredinis, Bacteroides intestinalis, Bacteroides ovatus, Bacteroides xylanisolvens, Escherichia coli, Klebsiella pneumoniae, Lachnospira eligens, Phocaeicola vulgatus, Roseburia intestinalis, Ruminococcus bromii, Veillonella atypica, Veillonella dispar, Veillonella parvula | 2014 |
Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI. |
Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis | Clinical Infectious Diseases | 58(3), page(s): 396-399 | 10.1093/cid/cit715 |
| Houttu2018 | health, obesity | Bacteroides uniformis, Prevotella copri, Phocaeicola vulgatus, Bacteroides caccae, Bacteroides fragilis, Bacteroides eggerthii | 2018 |
Houttu N, Mokkala K, Laitinen K. |
Overweight and obesity status in pregnant women are related to intestinal microbiota and serum metabolic and inflammatory profiles | Clinical Nutrition | 37(6 Pt A), page(s): 1955-1966 | 10.1016/j.clnu.2017.12.013 |
| Hu2019 | health, tuberculosis, compilation | Akkermansia muciniphila, Bifidobacterium adolescentis, Bifidobacterium longum subsp. longum, Bifidobacterium pseudocatenulatum, Blautia obeum, Collinsella aerofaciens, Coprococcus comes, Dorea formicigenerans, Dorea longicatena, Enterocloster bolteae, Eubacterium rectale, Haemophilus parainfluenzae, Lachnospira eligens, Megamonas funiformis, Megamonas hypermegale, Megamonas rupellensis, Roseburia hominis, Roseburia intestinalis, Roseburia Inulinivorans, Ruminococcus lactaris, Sutterella wadsworthensis | 2019 |
Hu Y, Feng Y, Wu J, Liu F, Zhang Z, Hao Y, Liang S, Li B, Li J, Lv N, Xu Y, Zhu B, Sun Z. |
The Gut Microbiome Signatures Discriminate Healthy From Pulmonary Tuberculosis Patients | Frontiers in Cellular and Infection Microbiology | 9(90), page(s): 1-8 | 10.3389/fcimb.2019.00090 |
| Hu2020 | health, kidney disease | Eubacterium rectale | 2020 |
Hu X, Ouyang S, Xie Y, Gong Z, Du J. |
Characterizing the gut microbiota in patients with chronic kidney disease | Postgraduate Medicine | 132(6), page(s): 495-505 | 10.1080/00325481.2020.1744335 |
| Huang2019 | health, acute cerebral infarction | Akkermansia muciniphila, Alistipes indistinctus, Bacteroides barnesiae, Bacteroides caccae, Bacteroides eggerthii, Bacteroides ovatus, Bacteroides plebeius, Bacteroides uniformis, Bifidobacterium adolescentis, Blautia obeum, Blautia producta, Butyricicoccus pullicaecorum, Butyrivibrio crossotus, Enterocloster aldenensis, Enterocloster citroniae, Hungatella hathewayi, Clostridium celatum, Enterocloster clostridioformis, Peptacetobacter hiranonis, Enterocloster lavalensis, Clostridium perfringens, Clostridium ramosum, Clostridium symbiosum, Collinsella aerofaciens, Collinsella stercoris, Coprococcus catus, Coprococcus eutactus, Escherichia coli, Eubacterium biforme, Faecalibacterium prausnitzii, Gemmiger formicilis, Haemophilus parainfluenzae, Limosilactobacillus mucosae, Lactobacillus salivarius, Oscillospira guillermondii, Parabacteroides distasonis, Parabacteroides gordonii, Prevotella copri, Prevotella stercorea, Pyramidobacter piscolens, Roseburia faecis, Ruminococcus bromii, Ruminococcus gnavus, Ruminococcus torques, Streptococcus infantis, Veillonella dispar, Veillonella parvula | 2019 |
Huang L, Wang T, Wu Q, Dong X, Shen F, Liu D, Qin X, Yan L, Wan Q. |
Analysis of microbiota in elderly patients with Acute Cerebral Infarction | PeerJ | 7, page(s): e6928 | 10.7717/peerj.6928 |
| Huang2019a | health, ankylosing spondylitis | Bacteroides nordii, Flavonifractor plautii, Parabacteroides distasonis, Phocaeicola dorei, Parabacteroides massiliensis, Bacteroides xylanisolvens, Megamonas rupellensis, Enterocloster bolteae, Enterocloster asparagiformis, Collinsella aerofaciens, Hungatella hathewayi | 2019 |
Huang R, Li F, Zhou Y, Zeng Z, He X, Fang L, Pan F, Chen Y, Lin J, Li J, Qiu D, Tian Y, Tan X, Song Y, Xu Y, Lai Y, Yi H, Gao Q, Fang X, Shi M, Zhou C, Huang J, He YT. |
Metagenome-wide association study of the alterations in the intestinal microbiome composition of ankylosing spondylitis patients and the effect of traditional and herbal treatment | Journal of Medical Microbiology | 69(6), page(s): 797-805 | 10.1099/jmm.0.001107 |
| Ignacio2016 | health, obesity | Bacteroides fragilis, Bifidobacterium longum subsp. infantis, Phocaeicola vulgatus, Clostridium perfringens, Bifidobacterium adolescentis, Methanobrevibacter smithii, Escherichia coli | 2016 |
Ignacio A, Fernandes MR, Rodrigues VA, Groppo FC, Cardoso AL, Avila-Campos MJ, Nakano V. |
Correlation between body mass index and faecal microbiota from children | Clinical Microbiology and Infection | 22(3), page(s): e1-8 | 10.1016/j.cmi.2015.10.031 |
| Inoue2018 | health, hepatitis C | Ligilactobacillus salivarius, Bacteroides ovatus, Ligilactobacillus salivarius | 2018 |
Inoue T, Nakayama J, Moriya K, Kawaratani H, Momoda R, Ito K, Iio E, Nojiri S, Fujiwara K, Yoneda M, Yoshiji H, Tanaka Y. |
Gut Dysbiosis Associated With Hepatitis C Virus Infection | Clinical Infectious Diseases | 67(6), page(s): 869-877 | 10.1093/cid/ciy205 |
| Ishaq2017 | health, thyroiditis | Escherichia coli, Megasphaera micronuciformis, Paraprevotella clara, Rhizobium giardinii, Lactobacillus gasseri, Campylobacter gracilis, Ruminococcus flavefaciens, Dialister propionicifaciens, Tractidigestivibacter scatoligenes | 2017 |
Ishaq HM, Mohammad IS, Guo H, Shahzad M, Hou YJ, Ma C, Naseem Z, Wu X, Shi P, Xu J. |
Molecular estimation of alteration in intestinal microbial composition in Hashimoto's thyroiditis patients | Biomedicine & Pharmacotherapy | 95, page(s): 865-874 | 10.1016/j.biopha.2017.08.101 |
| Iwasawa2016 | health, sclerosing cholangitis | Blautia obeum, Enterococcus faecium, Parabacteroides distasonis, Streptococcus parasanguinis, Faecalibacterium prausnitzii, Enterocloster clostridioformis, Anaerostipes hadrus, Ruminococcus torques, Enterococcus gilvus, Enterococcus faecium | 2016 |
Iwasawa K, Suda W, Tsunoda T, Oikawa-Kawamoto M, Umetsu S, Inui A, Fujisawa T, Morita H, Sogo T, Hattori M. |
Characterisation of the faecal microbiota in Japanese patients with paediatric-onset primary sclerosing cholangitis | Gut | 66(7), page(s): 1344-1346 | 10.1136/gutjnl-2016-312533 |
| Jackson2016 | health, frailty, aging | Akkermansia muciniphila, Amedibacillus dolichus, Bacteroides acidifaciens, Bacteroides caccae, Bacteroides eggerthii, Bacteroides fragilis, Bacteroides ovatus, Bacteroides uniformis, Bifidobacterium adolescentis, Bifidobacterium animalis, Bifidobacterium bifidum, Bifidobacterium longum subsp. Longum, Bifidobacterium pseudolongum, Blautia obeum, Blautia producta, Clostridium perfringens, Collinsella aerofaciens, Coprococcus catus, Corynebacterium durum, Dorea formicigenerans, Eggerthella lenta, Eubacterium biforme, Faecalibacterium prausnitzii, Haemophilus parainfluenzae, Oxalobacter formigenes, Parabacteroides distasonis, Phocaeicola plebeius, Prevotella copri, Roseburia faecis, Rothia mucilaginosa, Ruminococcus bromii, Ruminococcus callidus, Ruminococcus gnavus, Ruminococcus torques, Solobacterium moorei , Streptococcus anginosus, Veillonella dispar, Veillonella parvula | 2016 |
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Signatures of early frailty in the gut microbiota | Genome Medicine | 8(1), page(s): 8 | 10.1186/s13073-016-0262-7 |
| Jandhyala2017 | health, pancreatitis, diabetes | Faecalibacterium prausnitzii, Ruminococcus bromii | 2017 |
Jandhyala SM, Madhulika A, Deepika G, Rao GV, Reddy DN, Subramanyam C, Sasikala M, Talukdar R. |
Altered intestinal microbiota in patients with chronic pancreatitis: implications in diabetes and metabolic abnormalities | Scientific Reports | 7, page(s): 43640 | 10.1038/srep43640 |
| Jhangi2014 | health, MS, multiple sclerosis | Methanobrevibacter smithii | 2014 |
Sushrut Jhangi, Roopali Gandhi, Bonnie Glanz, Sandra Cook, Parham Nejad, Doyle Ward, Ning Li, Georg Gerber, Lynn Bry, Howard Weiner |
Increased Archaea Species and Changes with Therapy in Gut Microbiome of Multiple Sclerosis Subjects | Neurology | 82(10 Supplement), page(s): S24.001 | null |
| Jiang2016 | health, kidney disease, butyrate | Faecalibacterium prausnitzii | 2016 |
Jiang S, Xie S, Lv D, Zhang Y, Deng J, Zeng L, Chen Y. |
A reduction in the butyrate producing species Roseburia spp. and Faecalibacterium prausnitzii is associated with chronic kidney disease progression | Antonie van Leeuwenhoek | 109(10), page(s): 1389-1396 | 10.1007/s10482-016-0737-y |
| Jiang2017 | health, kidney disease | Bacteroides fragilis, Blautia coccoides, Escherichia coli, Faecalibacterium prausnitzii | 2017 |
Jiang S, Xie S, Lv D, Wang P, He H, Zhang T, Zhou Y, Lin Q, Zhou H, Jiang J, Nie J, Hou F, Chen Y. |
Alteration of the gut microbiota in Chinese population with chronic kidney disease | Scientific Reports | 7(1), page(s): 2870 | 10.1038/s41598-017-02989-2 |
| Jiang2018 | health, anxiety | Eubacterium rectale, Ruminococcus gnavus | 2018 |
Jiang HY, Zhang X, Yu ZH, Zhang Z, Deng M, Zhao JH, Ruan B. |
Altered gut microbiota profile in patients with generalized anxiety disorder | Journal of Psychiatric Research | 104, page(s): 130-136 | 10.1016/j.jpsychires.2018.07.007 |
| Jie2017 | health, atherosclerotic cardiovascular disease, compilation | Alistipes shahii, Eggerthella lenta, Escherichia coli, Faecalibacterium prausnitzii, Klebsiella aerogenes, Lancefieldella parvula, Ligilactobacillus salivarius, Prevotella copri, Roseburia intestinalis, Ruminococcus gnavus, Solobacterium moorei | 2017 |
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The gut microbiome in atherosclerotic cardiovascular disease | Nature communications | 8(1), page(s): 845 | 10.1038/s41467-017-00900-1 |
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Joly F, Mayeur C, Bruneau A, Noordine ML, Meylheuc T, Langella P, Messing B, Duée PH, Cherbuy C, Thomas M. |
Drastic changes in fecal and mucosa-associated microbiota in adult patients with short bowel syndrome | Biochimie | 92(7), page(s): 753-761 | 10.1016/j.biochi.2010.02.015 |
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Joossens M, Huys G, Cnockaert M, De Preter V, Verbeke K, Rutgeerts P, Vandamme P, Vermeire S. |
Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives | Gut | 60(5), page(s): 631-637 | 10.1136/gut.2010.223263 |
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Clostridium leptum group bacteria abundance and diversity in the fecal microbiota of patients with inflammatory bowel disease: a case-control study in India | BMC Gastroenterology | 13, page(s): 20 | 10.1186/1471-230X-13-20 |
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Kalliomäki M, Collado MC, Salminen S, Isolauri E. |
Early differences in fecal microbiota composition in children may predict overweight | The American Journal of Clinical Nutrition | 87(3), page(s): 534-538 | 10.1093/ajcn/87.3.534 |
| Kamo2017 | health, coronary disease | Dorea longicatena, Eubacterium rectale | 2017 |
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Dysbiosis and compositional alterations with aging in the gut microbiota of patients with heart failure | PLOS ONE | 12(3), page(s): e0174099 | 10.1371/journal.pone.0174099 |
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Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray | Inflammatory Bowel Diseases | 16(12), page(s): 2034-2042 | 10.1002/ibd.21319 |
| Kang2018 | health, autism | Faecalibacterium prausnitzii, Haemophilus parainfluenzae | 2018 |
Kang DW, Ilhan ZE, Isern NG, Hoyt DW, Howsmon DP, Shaffer M, Lozupone CA, Hahn J, Adams JB, Krajmalnik-Brown R. |
Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders | Anaerobe | 49, page(s): 121-131 | 10.1016/j.anaerobe.2017.12.007 |
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Karlsson FH, Tremaroli V, Nookaew I, Bergström G, Behre CJ, Fagerberg B, Nielsen J, Bäckhed F. |
Gut metagenome in European women with normal, impaired and diabetic glucose control | Nature | 498(7452), page(s): 99-103 | 10.1038/nature12198 |
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Kassinen A, Krogius-Kurikka L, Mäkivuokko H, Rinttilä T, Paulin L, Corander J, Malinen E, Apajalahti J, Palva A. |
The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects | Gastroenterology | 133(1), page(s): 24-33 | 10.1053/j.gastro.2007.04.005 |
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Lower Bifidobacteria counts in both duodenal mucosa-associated and fecal microbiota in irritable bowel syndrome patients | World Journal of Gastroenterology | 15(23), page(s): 2887-2892 | 10.3748/wjg.15.2887 |
| Kim2018 | health, high blood pressure | Alistipes finegoldii, Alistipes indistinctus, Bacteroides salyersiae, Bacteroides thetaiotaomicron, Eubacterium rectale, Paraprevotella clara, Paraprevotella xylaniphila, Ruminococcus callidus | 2018 |
Kim S, Goel R, Kumar A, Qi Y, Lobaton G, Hosaka K, Mohammed M, Handberg EM, Richards EM, Pepine CJ, Raizada MK. |
Imbalance of gut microbiome and intestinal epithelial barrier dysfunction in patients with high blood pressure | Clinical Science (London) | 132(6), page(s): 701-718 | 10.1042/CS20180087 |
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Kim S, Rigatto K, Gazzana MB, Knorst MM, Richards EM, Pepine CJ, Raizada MK. |
Altered Gut Microbiome Profile in Patients With Pulmonary Arterial Hypertension | Hypertension | 75(4), page(s): 1063-1071 | 10.1161/HYPERTENSIONAHA.119.14294 |
| Kinumaki2015 | health, inflammation of the coronary arteries, Kawasaki disease | Roseburia hominis, Roseburia intestinalis, Streptococcus oralis, Streptococcus pneumoniae, Streptococcus pseudopneumoniae, Streptococcus sanguinis, Streptococcus gordonii, Streptococcus pasteurianus | 2015 |
Kinumaki A, Sekizuka T, Hamada H, Kato K, Yamashita A, Kuroda M. |
Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis | Frontiers in Microbiology | 6, page(s): 824 | 10.3389/fmicb.2015.00824 |
| Kishikawa2020 | health, rheumatoid arthritis | Gardnerella vaginalis, Phocaeicola sartorii, Porphyromonas somerae, Prevotella amnii, Prevotella corporis, Prevotella denticola, Prevotella disiens, Prevotella marshii | 2020 |
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Metagenome-wide association study of gut microbiome revealed novel aetiology of rheumatoid arthritis in the Japanese population | Annals of the rheumatic diseases | 79(1), page(s): 103-111 | 10.1136/annrheumdis-2019-215743 |
| Knoll2017 | health, IBD, inflammatory bowel disease | Bilophila wadsworthia, Erysipelatoclostridium ramosum, Escherichia coli, Eubacterium rectale, Faecalibacterium prausnitzii, Fusobacterium nucleatum, Ruminococcus gnavus | 2017 |
Knoll RL, Forslund K, Kultima JR, Meyer CU, Kullmer U, Sunagawa S, Bork P, Gehring S. |
Gut microbiota differs between children with Inflammatory Bowel Disease and healthy siblings in taxonomic and functional composition: a metagenomic analysis | American Journal of Physiology. Gastrointestinal and Liver Physiology | 312(4), page(s): G327-G339 | 10.1152/ajpgi.00293.2016 |
| Kolho2015 | health, IBD, inflammatory bowel disease | Bacteroides fragilis, Clostridioides difficile, Erysipelatoclostridium ramosum, Faecalibacterium prausnitzii, Faecalitalea cylindroides, Sutterella wadsworthensis | 2015 |
Kolho KL, Korpela K, Jaakkola T, Pichai MV, Zoetendal EG, Salonen A, de Vos WM. |
Fecal Microbiota in Pediatric Inflammatory Bowel Disease and Its Relation to Inflammation | The American Journal of Gastroenterology | 110(6), page(s): 921-930 | 10.1038/ajg.2015.149 |
| KowalskaDuplaga2019 | health, Crohn's disease | Bifidobacterium adolescentis, Clostridium celatum, Faecalibacterium prausnitzii, Gemmiger formicilis, Roseburia faecis, Ruminococcus bromii | 2019 |
Kowalska-Duplaga K, Gosiewski T, Kapusta P, Sroka-Oleksiak A, Wędrychowicz A, Pieczarkowski S, Ludwig-Słomczyńska AH, Wołkow PP, Fyderek K. |
Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn's disease | Scientific Reports | 9(1), page(s): 18880 | 10.1038/s41598-019-55290-9 |
| Le2013 | health, type 2 diabetes | Bifidobacterium adolescentis, Lacticaseibacillus rhamnosus, Lactobacillus acidophilus, Lactobacillus delbrueckii subsp. bulgaricus | 2013 |
Le KA, Li Y, Xu X, Yang W, Liu T, Zhao X, Tang YG, Cai D, Go VL, Pandol S, Hui H. |
Alterations in fecal Lactobacillus and Bifidobacterium species in type 2 diabetic patients in Southern China population | Frontiers in Physiology | 3, page(s): 496 | 10.3389/fphys.2012.00496 |
| LeChatelier2013 | health, compilation | Bacteroides pectinophilus, Clostridium symbiosum, Ruminococcus torques | 2013 |
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium, Bork P, Wang J, Ehrlich SD, Pedersen O. |
Richness of human gut microbiome correlates with metabolic markers | Nature | 500(7464), page(s): 541-546 | 10.1038/nature12506 |
| Li2012 | health, Crohn's disease | Acinetobacter lwoffii, Bacteroides pectinophilus , Bacteroides uniformis, Clostridioides difficile, Clostridium leptum , Enterocloster bolteae, Enterococcus faecium, Escherichia coli , Faecalibacterium prausnitzii , Helicobacter canadensis, Lactobacillus coleohominis, Phocaeicola coprophilus, Prevotella bryantii, Pseudoflavonifractor capillosus, Roseburia intestinalis, Ruminococcus flavefaciens, Salmonella enterica subsp. enterica serovar Kentucky, Shigella flexneri, Streptococcus gallolyticus subsp. gallolyticus, Veillonella atypica, Veillonella dispar, Veillonella parvula, Weizmannia coagulans, Yersinia enterocolitica subsp. palearctica | 2012 |
Li Q, Wang C, Tang C, Li N, Li J. |
Molecular-phylogenetic characterization of the microbiota in ulcerated and non-ulcerated regions in the patients with Crohn's disease | PLOS ONE | 7(4), page(s): e34939 | 10.1371/journal.pone.0034939 |
| Li2019b | health, systemic lupus erythematosus, compilation | Faecalibacterium prausnitzii, Limosilactobacillus mucosae, Streptococcus anginosus, Veillonella dispar | 2019 |
Li Y, Wang HF, Li X, Li HX, Zhang Q, Zhou HW, He Y, Li P, Fu C, Zhang XH, Qiu YR, Li JL. |
Disordered intestinal microbes are associated with the activity of Systemic Lupus Erythematosus | Clinical Science | 133(7), page(s): 821-838 | 10.1042/CS20180841 |
| Li2019c | health, Parkinson's disease | Anaerobutyricum hallii, Bacteroides caccae, Bacteroides eggerthii, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bifidobacterium bifidum, Bifidobacterium dentium, Clostridium perfringens, Collinsella aerofaciens, Collinsella stercoris, Erysipelatoclostridium ramosum, Escherichia coli, Eubacterium coprostanoligenes, Eubacterium ventriosum, Lactobacillus gasseri, Ligilactobacillus salivarius, Limosilactobacillus mucosae, Megasphaera elsdenii, Methanobrevibacter smithii, Parabacteroides distasonis, Parabacteroides goldsteinii, Parabacteroides merdae, Pasteurella aerogenes, Phocaeicola coprocola, Phocaeicola dorei, Phocaeicola massiliensis, Phocaeicola plebeius, Prevotella copri, Pseudomonas veronii, Roseburia inulinivorans, Ruminococcus bicirculans, Ruminococcus callidus, Ruminococcus gnavus, Ruminococcus torques, Streptococcus anginosus, Streptococcus danieliae, Streptococcus mutans, Streptococcus sobrinus, Streptococcus thermophilus | 2019 |
Li C, Cui L, Yang Y, Miao J, Zhao X, Zhang J, Cui G, Zhang Y. |
Gut Microbiota Differs Between Parkinson's Disease Patients and Healthy Controls in Northeast China | Frontiers in Molecular Neuroscience | 12(171), page(s): 1-13 | 10.3389/fnmol.2019.00171 |
| Li2019d | health, Parkinson's disease | Eubacterium ventriosum | 2019 |
Li F, Wang P, Chen Z, Sui X, Xie X, Zhang J. |
Alteration of the fecal microbiota in North-Eastern Han Chinese population with sporadic Parkinson's disease | Neuroscience Letters | 707, page(s): 134297 | 10.1016/j.neulet.2019.134297 |
| Lin2020a | health, obesity | Faecalibacterium prausnitzii | 2020 |
Lin TY, Wu PH, Lin YT, Hung SC. |
Characterization of Gut Microbiota Composition in Hemodialysis Patients With Normal Weight Obesity | The Journal of Clinical Endocrinology and Metabolism | 105(6), page(s): 2006–2014 | 10.1210/clinem/dgaa166 |
| Liu2016a | health, preeclampsia | Clostridium perfringens, Coprococcus catus, Solobacterium moorei | 2016 |
Liu J, Yang H, Yin Z, Jiang X, Zhong H, Qiu D, Zhu F, Li R. |
Remodeling of the gut microbiota and structural shifts in Preeclampsia patients in South China | European Journal of Clinical Microbiology & Infectious Diseases | 36(4), page(s): 713-719 | 10.1007/s10096-016-2853-z |
| Liu2019a | health, coronary artery disease | Collinsella aerofaciens, Parabacteroides distasonis, Phocaeicola plebeius, Prevotella stercorea, Veillonella dispar, Prevotella copri | 2019 |
Liu Z, Li J, Liu H, Tang Y, Zhan Q, Lai W, Ao L, Meng X, Ren H, Xu D, Zeng Q. |
The intestinal microbiota associated with cardiac valve calcification differs from that of coronary artery disease | Atherosclerosis | 284, page(s): 121-128 | 10.1016/j.atherosclerosis.2018.11.038 |
| Liu2019b | health, autism | Eubacterium brachy, Eubacterium rectale, Eubacterium ventriosum, Eubacterium xylanophilum | 2019 |
Liu S, Li E, Sun Z, Fu D, Duan G, Jiang M, Yu Y, Mei L, Yang P, Tang Y, Zheng P. |
Altered gut microbiota and short chain fatty acids in Chinese children with autism spectrum disorder | Scientific Reports | 9(1), page(s): 287 | 10.1038/s41598-018-36430-z |
| Liu2020c | health, colorectal cancer | Fusobacterium nucleatum | 2020 |
Liu X, Cheng Y, Shao L, Ling Z. |
Alterations of the Predominant Fecal Microbiota and Disruption of the Gut Mucosal Barrier in Patients with Early-Stage Colorectal Cancer | BioMed Research International | page(s): 2948282 | 10.1155/2020/2948282 |
| LopezContreras2018 | health, obesity | Bacteroides eggerthii, Phocaeicola plebeius | 2018 |
CLópez-Contreras BE, Morán-Ramos S, Villarruel-Vázquez R, Macías-Kauffer L, Villamil-Ramírez H, León-Mimila P, Vega-Badillo J, Sánchez-Muñoz F, Llanos-Moreno LE, Canizalez-Román A, Del Río-Navarro B, Ibarra-González I, Vela-Amieva M, Villarreal-Molina T, Ochoa-Leyva A, Aguilar-Salinas CA, Canizales-Quinteros S. |
Composition of gut microbiota in obese and normal-weight Mexican school-age children and its association with metabolic traits | Pediatric Obesity | 13(6), page(s): 381-388 | 10.1111/ijpo.12262 |
| Lozupone2013 | health, HIV | Dialister propionicifaciens, Acidaminococcus fermentans, Allisonella histaminiformans, Catenibacterium mitsuokai, Desulfovibrio piger, Eubacterium biforme, Megasphaera elsdenii, Mitsuokella jalaludinii, Prevotella copri, Prevotella stercorea, Ruminococcus callidus | 2013 |
Lozupone CA, Li M, Campbell TB, Flores SC, Linderman D, Gebert MJ, Knight R, Fontenot AP, Palmer BE. |
Alterations in the gut microbiota associated with HIV-1 infection | Cell Host & Microbe | 14(3), page(s): 329-339 | 10.1016/j.chom.2013.08.006 |
| Lu2011 | health, liver disease, HBV infection | Enterococcus faecalis, Faecalibacterium prausnitzii | 2011 |
Lu H, Wu Z, Xu W, Yang J, Chen Y, Li L. |
Intestinal microbiota was assessed in cirrhotic patients with hepatitis B virus infection. Intestinal microbiota of HBV cirrhotic patients | Microbial Ecology | 61(3), page(s): 693-703 | 10.1007/s00248-010-9801-8 |
| Lun2018 | health, kidney disease | Anaerobutyricum hallii, Clostridium innocuum, Eubacterium coprostanoligenes, Eubacterium rectale, Ruminococcus gnavus, Ruminococcus torques | 2018 |
Lun H, Yang W, Zhao S, Jiang M, Xu M, Liu F, Wang Y. |
Altered gut microbiota and microbial biomarkers associated with chronic kidney disease | MicrobiologyOpen | 8(4), page(s): e00678 | 10.1002/mbo3.678 |
| Luo2018 | health, systemic lupus erythematosus | Blautia caecimuris, Alistipes finegoldii, Alistipes ihumii, Alistipes indistinctus, Alistipes obesi, Alistipes onderdonkii, Alistipes shahii, Blautia faecis, Blautia wexlerae, Odoribacter laneus, Odoribacter splanchnicus | 2018 |
Luo XM, Edwards MR, Mu Q, Yu Y, Vieson MD, Reilly CM, Ahmed SA, Bankole AA. |
Gut Microbiota in Human Systemic Lupus Erythematosus and a Mouse Model of Lupus | Applied and Environmental Microbiology | 84(4), page(s): e02288-17 | 10.1128/AEM.02288-17 |
| Lv2016 | health, cirrhosis | Actinobacillus pleuropneumoniae, Anaeroglobus geminatus, Bacteroides eggerthii, Enterobacter asburiae, Haemophilus parainfluenzae, Megasphaera micronuciformis, Paraprevotella clara, Ruminococcus bromii | 2016 |
Lv LX, Fang DQ, Shi D, Chen DY, Yan R, Zhu YX, Chen YF, Shao L, Guo FF, Wu WR, Li A, Shi HY, Jiang XW, Jiang HY, Xiao YH, Zheng SS, Li LJ. |
Alterations and correlations of the gut microbiome, metabolism and immunity in patients with primary biliary cirrhosis | Environmental Microbiology | 18(7), page(s): 2272-2286 | 10.1111/1462-2920.13401 |
| Ma2011 | health, viral diarrhoea | Phocaeicola vulgatus | 2011 |
Ma C, Wu X, Nawaz M, Li J, Yu P, Moore JE, Xu J. |
Molecular characterization of fecal microbiota in patients with viral diarrhea | Current Microbiology | 63(3), page(s): 259-266 | 10.1007/s00284-011-9972-7 |
| Ma2019 | health, autism | Enterocloster clostridioformis | 2019 |
Ma B, Liang J, Dai M, Wang J, Luo J, Zhang Z, Jing J. |
Altered Gut Microbiota in Chinese Children With Autism Spectrum Disorders | Frontiers in Cellular and Infection Microbiology | 9, page(s): 40 | 10.3389/fcimb.2019.00040 |
| Ma2020 | health, type 2 diabetes | Eubacterium xylanophilum, Lachnospira eligens | 2020 |
Ma S, You Y, Huang L, Long S, Zhang J, Guo C, Zhang N, Wu X, Xiao Y, Tan H. |
Alterations in Gut Microbiota of Gestational Diabetes Patients During the First Trimester of Pregnancy | Frontiers in Cellular and Infection Microbiology | 10, page(s): 58 | 10.3389/fcimb.2020.00058 |
| Machiels2014 | health, butyrate, ulcerative colitis | Bifidobacterium longum subsp. longum, Faecalibacterium prausnitzii, Roseburia hominis | 2014 |
Machiels K, Joossens M, Sabino J, De Preter V, Arijs I, Eeckhaut V, Ballet V, Claes K, Van Immerseel F, Verbeke K, Ferrante M, Verhaegen J, Rutgeerts P, Vermeire S. |
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis | Gut | 63(8), page(s): 1275-1283 | 10.1136/gutjnl-2013-304833 |
| Maffeis2016 | health, type 1 diabetes, lactulose/mannitol test, gut permeability | Bifidobacterium longum subsp. longum, Dialister invisus, Gemella sanguinis | 2016 |
Maffeis C, Martina A, Corradi M, Quarella S, Nori N, Torriani S, Plebani M, Contreas G, Felis GE. |
Association between intestinal permeability and faecal microbiota composition in Italian children with beta cell autoimmunity at risk for type 1 diabetes | Diabetes/Metabolism Research and Reviews | 32(7), page(s): 700-709 | 10.1002/dmrr.2790 |
| Mai2011 | health, necrotizing enterocolitis | Cronobacter muytjensii, Escherichia coli, Klebsiella pneumoniae, Staphylococcus epidermidis | 2011 |
Mai V, Young CM, Ukhanova M, Wang X, Sun Y, Casella G, Theriaque D, Li N, Sharma R, Hudak M, Neu J. |
Fecal microbiota in premature infants prior to necrotizing enterocolitis | PLOS ONE | 6(6), page(s): e20647 | 10.1371/journal.pone.0020647 |
| Maji2018 | health, SCFA, tuberculosis, butyrate | Bifidobacterium adolescentis, Escherichia coli, Faecalibacterium prausnitzii, Lactobacillus crispatus, Mitsuokella multacida, Mycobacterium tuberculosis, Phascolarctobacterium succinatutens, Phocaeicola coprocola, Prevotella bivia, Prevotella buccae, Roseburia Inulinivorans, Shigella sonnei, Streptococcus pneumoniae, Streptococcus vestibularis, Tyzzerella nexilis | 2018 |
Maji A, Misra R, Dhakan DB, Gupta V, Mahato NK, Saxena R, Mittal P, Thukral N, Sharma E, Singh A, Virmani R, Gaur M, Singh H, Hasija Y, Arora G, Agrawal A, Chaudhry A, Khurana JP, Sharma VK, Lal R, Singh Y. |
Gut microbiome contributes to impairment of immunity in pulmonary tuberculosis patients by alteration of butyrate and propionate producers | Environmental Microbiology | 20(1), page(s): 402-419 | 10.1111/1462-2920.14015 |
| Malham2019 | health, IBD, inflammatory bowel disease | Adlercreutzia equolifaciens, Akkermansia muciniphila, Alistipes shahii, Clostridium cellulovorans, Collinsella aerofaciens, Coprobacter fastidiosus, Flavonifractor plautii, Gemmiger formicilis, Odoribacter splanchnicus, Phocaeicola massiliensis, Ruminococcus bromii, Turicibacter sanguinis | 2019 |
Malham M, Lilje B, Houen G, Winther K, Andersen PS, Jakobsen C. |
The microbiome reflects diagnosis and predicts disease severity in paediatric onset inflammatory bowel disease | Scandinavian Journal of Gastroenterology | 54(8), page(s): 969-975 | 10.1080/00365521.2019.1644368 |
| Malinen2005 | health, IBS, irritable bowel syndrome | Bifidobacterium catenulatum, Blautia coccoides | 2005 |
Malinen E, Rinttilä T, Kajander K, Mättö J, Kassinen A, Krogius L, Saarela M, Korpela R, Palva A. |
Analysis of the fecal microbiota of irritable bowel syndrome patients and healthy controls with real-time PCR | American Journal of Gastroenterology | 100(2), page(s): 373-382 | 10.1111/j.1572-0241.2005.40312.x |
| Manichanh2006 | health, Crohn's disease | Clostridium leptum, Blautia coccoides | 2006 |
Manichanh C, Rigottier-Gois L, Bonnaud E, Gloux K, Pelletier E, Frangeul L, Nalin R, Jarrin C, Chardon P, Marteau P, Roca J, Dore J. |
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach | Gut | 55(2), page(s): 205-211 | 10.1136/gut.2005.073817 |
| Manor2016 | health, cystic fibrosis | Bifidobacterium bifidum, Clostridioides difficile, Enterococcus faecalis, Enterococcus faecium, Eubacterium rectale, Veillonella parvula | 2016 |
Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E. |
Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis | Scientific Reports | 6, page(s): 22493 | 10.1038/srep22493 |
| Margiotta2020 | health, kidney disease | Faecalibacterium prausnitzii, Ruminococcus torques, Faecalitalea cylindroides, Eggerthella lenta, Eubacterium dolichum | 2020 |
Margiotta E, Miragoli F, Callegari ML, Vettoretti S, Caldiroli L, Meneghini M, Zanoni F, Messa P. |
Gut microbiota composition and frailty in elderly patients with Chronic Kidney Disease | PLOS ONE | 15(4), page(s): e0228530 | 10.1371/journal.pone.0228530 |
| Marvasti2020 | health, obesity | Akkermansia muciniphila, Faecalibacterium prausnitzii | 2020 |
Ettehad Marvasti F, Moshiri A, Taghavi MS, Riazi S, Taati M, Sadati SF, Ghaheri A, Masoomi M, Vaziri F, Fateh A, Rohani P, Tarashi S, Masotti A, Ahmadi Badi S, Siadat SD. |
The First Report of Differences in Gut Microbiota Composition between Obese and Normal Weight Iranian Subjects | Iranian Biomedical Journal | 24(3), page(s): 148-154 | 10.29252/ibj.24.3.148 |
| MayaLucas2019 | health, obesity | Anaerostipes hadrus, Bacteroides faecis, Bacteroides ovatus, Bacteroides salyersiae, Bacteroides xylanisolvens, Bilophila wadsworthia, Coprococcus comes, Dorea formicigenerans, Enterocloster citroniae, Streptococcus thermophiles, Veillonella parvula | 2019 |
Maya-Lucas O, Murugesan S, Nirmalkar K, Alcaraz LD, Hoyo-Vadillo C, Pizano-Zárate ML, García-Mena J. |
The gut microbiome of Mexican children affected by obesity | Anaerobe | 55, page(s): 11-23 | 10.1016/j.anaerobe.2018.10.009 |
| Mazzini2018 | health, motor neuron disease, ALS | Escherichia coli | 2018 |
Mazzini L, Mogna L, De Marchi F, Amoruso A, Pane M, Aloisio I, Cionci NB, Gaggìa F, Lucenti A, Bersano E, Cantello R, Di Gioia D, Mogna G. |
Potential Role of Gut Microbiota in ALS Pathogenesis and Possible Novel Therapeutic Strategies | Journal of Clinical Gastroenterology | 52(Suppl 1), page(s): S68-S70 | 10.1097/MCG.0000000000001042 |
| Minerbi2019 | health, fibromyalgia, compilation | Agathobaculum desmolans, Alistipes onderdonkii, Bacteroides uniformis, Blautia faecis, Blautia hydrogenotrophica, Blautia massiliensis, Clostridium scindens, Eisenbergiella massiliensis, Eisenbergiella tayi, Erysipelatoclostridium ramosum, Faecalibacterium prausnitzii, Flavonifractor plautii, Haemophilus parainfluenzae, Hungatella hathewayi, Parabacteroides merdae, Prevotella copri, Ruthenibacterium lactatiformans | 2019 |
Minerbi A, Gonzalez E, Brereton NJB, Anjarkouchian A, Dewar K, Fitzcharles MA, Chevalier S, Shir Y. |
Altered microbiome composition in individuals with fibromyalgia | Pain | 160(11), page(s): 2589-2602 | 10.1097/j.pain.0000000000001640 |
| Miragoli2017 | health, cystic fibrosis | Bifidobacterium adolescentis, Bifidobacterium catenulatum, Blautia glucerasea, Blautia luti, Collinsella aerofaciens, Dialister invisus, Dorea longicatena, Escherichia coli, Eubacterium rectale, Faecalibacterium prausnitzii, Ruminococcus gnavus, | 2017 |
Miragoli F, Federici S, Ferrari S, Minuti A, Rebecchi A, Bruzzese E, Buccigrossi V, Guarino A, Callegari ML. |
Impact of cystic fibrosis disease on archaea and bacteria composition of gut microbiota | FEMS Microbiology Ecology | 93(2), page(s): fiw230 | 10.1093/femsec/fiw230 |
| MiraPascual2015 | health, colorectal cancer | Fusobacterium nucleatum | 2015 |
Mira-Pascual L, Cabrera-Rubio R, Ocon S, Costales P, Parra A, Suarez A, Moris F, Rodrigo L, Mira A, Collado MC. |
Microbial mucosal colonic shifts associated with the development of colorectal cancer reveal the presence of different bacterial and archaeal biomarkers | Journal of Gastroenterology | 50(2), page(s): 167-179 | 10.1007/s00535-014-0963-x |
| Miyake2015 | health, MS, multiple sclerosis | Anaerostipes hadrus, Bacteroides stercoris, Eggerthella lenta, Eubacterium rectale, Faecalibacterium prausnitzii, Lachnospira pectinoschiza, Lactobacillus rogosae, Megamonas funiformis, Phocaeicola coprocola, Phocaeicola coprophilus, Prevotella copri, Streptococcus thermophiles, Sutterella wadsworthensis | 2015 |
Miyake S, Kim S, Suda W, Oshima K, Nakamura M, Matsuoka T, Chihara N, Tomita A, Sato W, Kim SW, Morita H, Hattori M, Yamamura T. |
Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters | PLOS ONE | 10(9), page(s): e0137429 | 10.1371/journal.pone.0137429 |
| Monaco2016 | health, HIV | Ruminococcus bromii, Ruminococcus callidus | 2016 |
Monaco CL, Gootenberg DB, Zhao G, Handley SA, Ghebremichael MS, Lim ES, Lankowski A, Baldridge MT, Wilen CB, Flagg M, Norman JM, Keller BC, Luévano JM, Wang D, Boum Y, Martin JN, Hunt PW, Bangsberg DR, Siedner MJ, Kwon DS, Virgin HW. |
Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome | Cell Host & Microbe | 19(3), page(s): 311-322 | 10.1016/j.chom.2016.02.011 |
| Moore1995 | health, colorectal cancer, compilation | Bacteroides stercoris, Bifidobacterium angulatum, Bifidobacterium longum subsp. longum, Blautia hansenii, Blautia producta, Collinsella aerofaciens, Eubacterium rectale, Faecalibacterium prausnitzii, Faecalitalea cylindroides, Lachnospira eligens, Phocaeicola vulgatus, Ruminococcus albus, Ruminococcus gnavus, Ruminococcus torques | 1995 |
Moore WE, Moore LH. |
Intestinal floras of populations that have a high risk of colon cancer | Applied and Environmental Microbiology | 61(9), page(s): 3202-3207 | 10.1128/aem.61.9.3202-3207.1995 |
| MorenoArrones2019 | health, alopecia areata, hair loss | Bacteroides eggerthii, Dorea longicatena, Flavonifractor plautii, Holdemania filiformis, Parabacteroides distasonis, Parabacteroides johnsonii, Phascolarctobacterium succinatutens, Phocea massiliensis, Streptococcus thermophiles, Turicibacter sanguinis | 2019 |
Moreno-Arrones OM, Serrano-Villar S, Perez-Brocal V, Saceda-Corralo D, Morales-Raya C, Rodrigues-Barata R, Moya A, Jaen-Olasolo P, Vano-Galvan S. |
Analysis of the gut microbiota in alopecia areata: identification of bacterial biomarkers | Journal of the European Academy of Dermatology and Venereology | 34(2), page(s): 400-405 | 10.1111/jdv.15885 |
| Morgan2020 | health, colitis | Alistipes finegoldii, Alistipes putredinis, Haemophilus parainfluenzae, Veillonella parvula | 2020 |
Morgan DM, Cao Y, Miller K, McGoldrick J, Bellavance D, Chin SM, Halvorsen S, Maxner B, Richter JM, Sassi S, Burke KE, Yarze JC, Ludvigsson JF, Staller K, Chung DC, Khalili H. |
Microscopic Colitis Is Characterized by Intestinal Dysbiosis | Clinical Gastroenterology and Hepatology | 18(4), page(s): 984-986 | 10.1016/j.cgh.2019.06.035 |
| Morita2015 | health, anorexia nervosa | Bacteroides fragilis, Blautia coccoides, Clostridium leptum, Lactiplantibacillus plantarum, Clostridioides difficile, Latilactobacillus sakei | 2015 |
Morita C, Tsuji H, Hata T, Gondo M, Takakura S, Kawai K, Yoshihara K, Ogata K, Nomoto K, Miyazaki K, Sudo N. |
Gut Dysbiosis in Patients with Anorexia Nervosa | PLOS ONE | 10(12), page(s): e0145274 | 10.1371/journal.pone.0145274 |
| Mouzaki2013 | health, NAFLD, nonalcoholic fatty liver disease | Blautia coccoides | 2013 |
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Intestinal microbiota in patients with nonalcoholic fatty liver disease | Hepatology | 58(1), page(s): 120-127 | 10.1002/hep.26319 |
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Mouzaki M, Wang AY, Bandsma R, Comelli EM, Arendt BM, Zhang L, Fung S, Fischer SE, McGilvray IG, Allard JP. |
Bile Acids and Dysbiosis in Non-Alcoholic Fatty Liver Disease | PLOS ONE | 11(5), page(s): e0151829 | 10.1371/journal.pone.0151829 |
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Murri M, Leiva I, Gomez-Zumaquero JM, Tinahones FJ, Cardona F, Soriguer F, Queipo-Ortuño MI. |
Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study | BMC Medicine | 11(46), page(s): 1-12 | 10.1186/1741-7015-11-46 |
| Nishino2018 | health, IBD, inflammatory bowel disease | Ruminococcus bromii, Ruminococcus gnavus | 2018 |
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Altered gut microbiome and metabolome in patients with multiple system atrophy | Movement Disorders | 33(1), page(s): 174-176 | 10.1002/mds.27203 |
| Tang2018 | health, kidney stones | Anaerobutyricum hallii, Eubacterium ruminantium, Pseudomonas aeruginosa, Escherichia coli, Ruminococcus gnavus, Bosea thiooxidans, Pyrimidobacter piscolens, Bifidobacterium adolescentis, Phocaeicola plebeius, Alistipes onderdonkii, Alistipes shahii, Roseburia inulinvorans | 2018 |
Tang R, Jiang Y, Tan A, Ye J, Xian X, Xie Y, Wang Q, Yao Z, Mo Z. |
16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones | Urolithiasis | 46(6), page(s): 503-514 | 10.1007/s00240-018-1037-y |
| Tarallo2019 | health, colorectal cancer | Bacteroides ovatus, Bifidobacterium catenulatum, Escherichia coli, Eubacterium rectale, Klebsiella pneumoniae, Lachnospira eligens, Porphyromonas asaccharolytica, Klebsiella oxytoca, Bifidobacterium breve, Pseudomonas aeruginosa, Fusobacterium nucleatum, Enterococcus faecalis, Bifidobacterium angulatum, Lactococcus lactis subsp. lactis, Bacteroides fragilis, Enterococcus faecium, Haemophilus parainfluenzae, Alistipes finegoldii, Bacteroides cellulosilyticus, Clostridium perfringens, Phocaeicola dorei | 2019 |
Tarallo S, Ferrero G, Gallo G, Francavilla A, Clerico G, Realis Luc A, Manghi P, Thomas AM, Vineis P, Segata N, Pardini B, Naccarati A, Cordero F. |
Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples | mSystems | 4(5), page(s): e00289-19 | 10.1128/mSystems.00289-19 |
| Thingholm2019 | health, type 2 diabetes, obesity | Faecalibacterium prausnitzii | 2019 |
Thingholm LB, Rühlemann MC, Koch M, Fuqua B, Laucke G, Boehm R, Bang C, Franzosa EA, Hübenthal M, Rahnavard A, Frost F, Lloyd-Price J, Schirmer M, Lusis AJ, Vulpe CD, Lerch MM, Homuth G, Kacprowski T, Schmidt CO, Nöthlings U, Karlsen TH, Lieb W, Laudes M, Franke A, Huttenhower C. |
Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition | Cell Host & Microbe | 26(2), page(s): 252-264 | 10.1016/j.chom.2019.07.004 |
| Toya2020 | health, coronary artery disease | Anaerobutyricum hallii, Ruminococcus gauvreauii, Ruminococcus gnavus | 2020 |
Toya T, Corban MT, Marrietta E, Horwath IE, Lerman LO, Murray JA, Lerman A. |
Coronary artery disease is associated with an altered gut microbiome composition | PLOS ONE | 15(1), page(s): e0227147 | 10.1371/journal.pone.0227147 |
| Tsai2020 | health, NAFLD, nonalcoholic fatty liver disease | Phocaeicola coprocola | 2020 |
Tsai MC, Liu YY, Lin CC, Wang CC, Wu YJ, Yong CC, Chen KD, Chuah SK, Yao CC, Huang PY, Chen CH, Hu TH, Chen CL. |
Gut Microbiota Dysbiosis in Patients with Biopsy-Proven Nonalcoholic Fatty Liver Disease: A Cross-Sectional Study in Taiwan | Nutrients | 12(3), page(s): 820 | 10.3390/nu12030820 |
| Tsuji2018 | health, kidney disease | Bacteroides fragilis, Clostridioides difficile, Faecalibacterium prausnitzii, Parabacteroides distasonis | 2018 |
Tsuji S, Suruda C, Hashiyada M, Kimata T, Yamanouchi S, Kitao T, Kino J, Akane A, Kaneko K. |
Gut Microbiota Dysbiosis in Children with Relapsing Idiopathic Nephrotic Syndrome | American Journal of Nephrology | 47(3), page(s): 164-170 | 10.1159/000487557 |
| Tunsjo2019 | health, colorectal cancer | Fusobacterium nucleatum | 2019 |
Tunsjø HS, Gundersen G, Rangnes F, Noone JC, Endres A, Bemanian V. |
Detection of Fusobacterium nucleatum in stool and colonic tissues from Norwegian colorectal cancer patients | European Journal of Clinical Microbiology & Infectious Diseases | 38(7), page(s): 1367-1376 | 10.1007/s10096-019-03562-7 |
| Unger2016 | health, SCFA, Parkinson's disease | Akkermansia muciniphila, Faecalibacterium prausnitzii, Methanobrevibacter smithii | 2016 |
Unger MM, Spiegel J, Dillmann KU, Grundmann D, Philippeit H, Bürmann J, Faßbender K, Schwiertz A, Schäfer KH. |
Short chain fatty acids and gut microbiota differ between patients with Parkinson's disease and age-matched controls | Parkinsonism and Related Disorders | 32, page(s): 66-72 | 10.1016/j.parkreldis.2016.08.019 |
| Urban2020 | health, brain trauma, compilation | Bacteroides thetaiotaomicron, Prevotella copri | 2020 |
Urban RJ, Pyles RB, Stewart CJ, Ajami N, Randolph KM, Durham WJ, Danesi CP, Dillon EL, Summons JR, Singh CK, Morrison M, Kreber LA, Masel B, Miller AL, Wright TJ, Sheffield-Moore M. |
Altered Fecal Microbiome Years after Traumatic Brain Injury | Journal of Neurotrauma | 37(8), page(s): 1037-1051 | 10.1089/neu.2019.6688 |
| Vaahtovuo2008 | health, rheumatoid arthritis | Bacteroides fragilis, Eubacterium rectale | 2008 |
Vaahtovuo J, Munukka E, Korkeamäki M, Luukkainen R, Toivanen P. |
Fecal microbiota in early rheumatoid arthritis | The Journal of Rheumatology | 35(8), page(s): 1500-1505 | PMID: 18528968 |
| Vakili2020 | health, Clostridioides difficile infection | Akkermansia muciniphila, Clostridioides difficile, Escherichia coli, Faecalibacterium prausnitzii | 2020 |
Vakili B, Fateh A, Asadzadeh Aghdaei H, Sotoodehnejadnematalahi F, Siadat SD. |
Characterization of Gut Microbiota in Hospitalized Patients with Clostridioides difficile Infection | Current Microbiology | 77(8), page(s): 1673-1680 | 10.1007/s00284-020-01980-x |
| vanderMeulen2019 | health, Sjögren's syndrome, lupus | Bacteroides ovatus, Bacteroides thetaiotaomicron, Bacteroides uniformis, Phocaeicola vulgatus | 2019 |
van der Meulen TA, Harmsen HJM, Vila AV, Kurilshikov A, Liefers SC, Zhernakova A, Fu J, Wijmenga C, Weersma RK, de Leeuw K, Bootsma H, Spijkervet FKL, Vissink A, Kroese FGM. |
Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus | Journal of Autoimmunity | 97, page(s): 77-87 | 10.1016/j.jaut.2018.10.009 |
| vanDijkhuizen2019 | health, arthritis | Cutibacterium acnes, Faecalibacterium prausnitzii, Haemophilus parainfluenzae, Parabacteroides distasonis | 2019 |
van Dijkhuizen EHP, Del Chierico F, Malattia C, Russo A, Pires Marafon D, Ter Haar NM, Magni-Manzoni S, Vastert SJ, Dallapiccola B, Prakken B, Martini A, De Benedetti F, Putignani L; Model Driven Paediatric European Digital Repository Consortium |
Microbiome Analytics of the Gut Microbiota in Patients With Juvenile Idiopathic Arthritis: A Longitudinal Observational Cohort Study | Arthritis & Rheumatology | 71(6), page(s): 1000-1010 | 10.1002/art.40827 |
| Vatanen2018 | health, type 1 diabetes | Alistipes shahii, Bifidobacterium dentium, Bifidobacterium pseudocatenulatum, Lacticaseibacillus rhamnosus, Lactococcus lactis subsp. lactis, Phocaeicola vulgatus, Roseburia hominis, Streptococcus mitis, Streptococcus oralis, Streptococcus pneumoniae, Streptococcus thermophiles | 2018 |
Vatanen T, Franzosa EA, Schwager R, Tripathi S, Arthur TD, Vehik K, Lernmark Å, Hagopian WA, Rewers MJ, She JX, Toppari J, Ziegler AG, Akolkar B, Krischer JP, Stewart CJ, Ajami NJ, Petrosino JF, Gevers D, Lähdesmäki H, Vlamakis H, Huttenhower C, Xavier RJ. |
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study | Nature | 562(7728), page(s): 589-594 | 10.1038/s41586-018-0620-2 |
| Ventura2019 | health, multiple sclerosis | Bacteroides xylanisolvens, Enterocloster bolteae, Dialister invisus, Tyzzerella nexile, Anaerotruncus colihominis, Ruminococcus gnavus, Clostridium leptum, Hungatella hathewayi, Intestinibacter bartlettii, Clostridium symbiosum, Enterocloster clostridioformis, Anaerofustis stercorihominis, Enterocloster asparagiformis, Clostridium innocuum, Peptostreptococcus anaerobius, Blautia producta, Enterocloster citroniae, Lactococcus lactis subsp. lactis, Clostridium methylpentosum, Streptococcus mutans, Erysipelatoclostridium ramosum, Adlercreutzia equolifaciens, Eggerthella lenta, Gardnerella vaginalis, Gordonibacter pamelaeae | 2019 |
Ventura RE, Iizumi T, Battaglia T, Liu M, Perez-Perez GI, Herbert J, Blaser MJ. |
Gut microbiome of treatment-naïve MS patients of different ethnicities early in disease course | Scientific Reports | 9(1), page(s): 16396 | 10.1038/s41598-019-52894-z |
| VichVila2018 | health, IBS, irritable bowel syndrome | Bacteroides fragilis, Bifidobacterium longum subsp. longum, Faecalibacterium prausnitzii, Phocaeicola vulgatus, Eubacterium rectale, Roseburia intestinalis | 2018 |
Vich Vila A, Imhann F, Collij V, Jankipersadsing SA, Gurry T, Mujagic Z, Kurilshikov A, Bonder MJ, Jiang X, Tigchelaar EF, Dekens J, Peters V, Voskuil MD, Visschedijk MC, van Dullemen HM, Keszthelyi D, Swertz MA, Franke L, Alberts R, Festen EAM, Dijkstra G, Masclee AAM, Hofker MH, Xavier RJ, Alm EJ, Fu J, Wijmenga C, Jonkers DMAE, Zhernakova A, Weersma RK. |
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome | Science Translational Medicine | 10(472), page(s): eaap8914 | 10.1126/scitranslmed.aap8914 |
| VillanuevaMillan2019 | health, metabolic syndrome, HIV | Lachnospira eligens, Faecalibacterium prausnitzii, Roseburia intestinalis, Roseburia inulinivorans, Ruminococcus flavefaciens, Sutterella wadsworthensis | 2019 |
Villanueva-Millán MJ, Pérez-Matute P, Recio-Fernández E, Lezana Rosales JM, Oteo JA. |
Characterization of gut microbiota composition in HIV-infected patients with metabolic syndrome | Journal of Physiology and Biochemistry | 75(3), page(s): 299-309 | 10.1007/s13105-019-00673-9 |
| Wan2019 | health, atrophy | Akkermansia muciniphila, Alistipes onderdonkii, Bifidobacterium pseudocatenulatum, Granulicatella adiacens, Megamonas funiformis, Phocaeicola coprocola, Phocaeicola plebeius, Roseburia hominis, Staphylococcus xylosus, Streptococcus parasanguinis, Tyzzerella nexilis | 2019 |
Wan L, Zhou X, Wang C, Chen Z, Peng H, Hou X, Peng Y, Wang P, Li T, Yuan H, Shi Y, Hou X, Xu K, Xie Y, He L, Xia K, Tang B, Jiang H. |
Alterations of the Gut Microbiota in Multiple System Atrophy Patients | Frontiers in Neuroscience | 13, page(s): 1102 | 10.3389/fnins.2019.01102 |
| Wan2020 | health, ADHD | Bacteroides caccae, Faecalibacterium prausnitzii, Odoribacter splanchnicus, Paraprevotella xylaniphila, Ruminococcus gnavus, Veillonella parvula | 2020 |
Wan L, Ge WR, Zhang S, Sun YL, Wang B, Yang G. |
Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder | Frontiers in Neuroscience | 14, page(s): 127 | 10.3389/fnins.2020.00127 |
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Wang L, Christophersen CT, Sorich MJ, Gerber JP, Angley MT, Conlon MA. |
Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder | Molecular Autism | 4(1), page(s): 42 | 10.1186/2040-2392-4-42 |
| Wang2018 | health, asthma, compilation | Bacteroides stercoris, Eggerthella lenta, Faecalibacterium prausnitzii, Sutterella wadsworthensis | 2018 |
Wang Q, Li F, Liang B, Liang Y, Chen S, Mo X, Ju Y, Zhao H, Jia H, Spector TD, Xie H, Guo R. |
A metagenome-wide association study of gut microbiota in asthma in UK adults | BMC Microbiology | 18(1), page(s): 114 | 10.1186/s12866-018-1257-x Free PMC Article |
| Wang2019 | health, bariatric surgery | Fusobacterium mortiferum, Streptococcus thermophilus, Alistipes finegoldii, Megasphaera elsdenii, Parabacteroides merdae, Bacteroides caccae, Akkermansia muciniphila, Phocaeicola coprocola, Limosilactobacillus mucosae, Phocaeicola plebeius, Phocaeicola dorei, Blautia obeum, Bacteroides nordii | 2019 |
Wang FG, Bai RX, Yan WM, Yan M, Dong LY, Song MM. |
Differential composition of gut microbiota among healthy volunteers, morbidly obese patients and post-bariatric surgery patients | Experimental and Therapeutic Medicine | 17(3), page(s): 2268-2278 | 10.3892/etm.2019.7200 |
| Wang2019a | health, autism | Chloracidobacterium thermophilum B, Coraliomargarita akajimensis, Campylobacter jejuni, Clostridium botulinum, Eggerthella lenta, Klebsiella pneumoniae, Lautropia mirabilis, Phocaeicola vulgatus, Ruminiclostridium cellulolyticum, Spirochaeta thermophila | 2019 |
Wang M, Wan J, Rong H, He F, Wang H, Zhou J, Cai C, Wang Y, Xu R, Yin Z, Zhou W. |
Alterations in Gut Glutamate Metabolism Associated with Changes in Gut Microbiota Composition in Children with Autism Spectrum Disorder | mSystems | 4(1), page(s): e00321-18 | 10.1128/mSystems.00321-18 |
| Wang2019b | health, Helicobacter pylori | Escherichia coli, Blautia obeum, Holdemanella biformis, Phocaeicola coprocola, Phocaeicola coprophilus, Phocaeicola dorei, Phocaeicola plebeius, Phocaeicola vulgatus, Bacteroides clarus, Bacteroides finegoldii, Bacteroides fragilis, Bacteroides intestinalis, Bifidobacterium pseudocatenulatum, Citrobacter portucalensis, Clostridium leptum, Clostridium symbiosum, Coprococcus catus, Coprococcus eutactus, Dorea formicigenerans, Dorea longicatena, Enterobacter cloacae, Faecalibacterium prausnitzii, Klebsiella pneumoniae, Klebsiella variicola, Megasphaera elsdenii, Odoribacter splanchnicus, Prevotella copri, Ruminococcus gnavus, Streptococcus salivarius, Sutterella wadsworthensis, Veillonella dispar, | 2019 |
Wang D, Li Y, Zhong H, Ding Q, Lin Y, Tang S, Zong Y, Wang Q, Zhang X, Yang H, Wang R, Liu X. |
Alterations in the human gut microbiome associated with Helicobacter pylori infection | FEBS Open Bio | 9(9), page(s): 1552-1560 | 10.1002/2211-5463.12694 |
| Wang2019c | health, ADHD | Bacteroides ovatus, Bacteroides uniformis, Phocaeicola coprocola, Sutterella stercoricanis | 2019 |
Wang LJ, Yang CY, Chou WJ, Lee MJ, Chou MC, Kuo HC, Yeh YM, Lee SY, Huang LH, Li SC. |
Gut microbiota and dietary patterns in children with attention-deficit/hyperactivity disorder | European Child & Adolescent Psychiatry | 29(3), page(s): 287-297 | 10.1007/s00787-019-01352-2 |
| Wang2019d | health, bile salts, infantile cholestatis | Bacteroides fragilis, Blautia wexlerae, Clostridium butyricum, Coprococcus comes, Eggerthella sinensis, Faecalibacterium prausnitzii, Flavonifractor plautii, Phocaeicola dorei, Ruminococcus gnavus, Streptococcus salivarius | 2019 |
Wang Y, Gao X, Zhang X, Xiao Y, Huang J, Yu D, Li X, Hu H, Ge T, Li D, Zhang T. |
Gut Microbiota Dysbiosis Is Associated with Altered Bile Acid Metabolism in Infantile Cholestasis | mSystems | 4(6), page(s): e00463-19 | 10.1128/mSystems.00463-19 |
| Wang2020a | health, kidney failure, compilation | Alistipes finegoldii, Alistipes shahii, Eggerthella lenta, Eubacterium rectale, Faecalibacterium prausnitzii, Flavonifractor plautii, Prevotella copri | 2020 |
Wang X, Yang S, Li S, Zhao L, Hao Y, Qin J, Zhang L, Zhang C, Bian W, Zuo L, Gao X, Zhu B, Lei XG, Gu Z, Cui W, Xu X, Li Z, Zhu B, Li Y, Chen S, Guo H, Zhang H, Sun J, Zhang M, Hui Y, Zhang X, Liu X, Sun B, Wang L, Qiu Q, Zhang Y, Li X, Liu W, Xue R, Wu H, Shao D, Li J, Zhou Y, Li S, Yang R, Pedersen OB, Yu Z, Ehrlich SD, Ren F. |
Aberrant gut microbiota alters host metabolome and impacts renal failure in humans and rodents | Gut | 69(12), page(s): 2131-2142 | 10.1136/gutjnl-2019-319766 |
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Watanabe S, Narisawa Y, Arase S, Okamatsu H, Ikenaga T, Tajiri Y, Kumemura M. |
Differences in fecal microflora between patients with atopic dermatitis and healthy control subjects | Journal of Allergy and Clinical Immunology | 111(3), page(s): 587-591 | 10.1067/mai.2003.105 |
| Weir2013 | health, colorectal cancer | Pseudobutyrivibrio ruminis, Akkermansia muciniphila, Bacteroides finegoldii, Bacteroides intestinalis, Blautia obeum, Citrobacter farmeri, Dialister invisus, Dialister pneumosintes, Dorea formicigenerans, Lachnobacterium bovis, Lachnospira pectinoschiza, Megamonas hypermegale, Prevotella copri, Pseudoflavonifractor capillosus, Ruminococcus albus | 2013 |
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Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults | PLOS ONE | 8(8), page(s): e70803 | 10.1371/journal.pone.0070803 |
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Wu ZW, Ling ZX, Lu HF, Zuo J, Sheng JF, Zheng SS, Li LJ. |
Changes of gut bacteria and immune parameters in liver transplant recipients | Hepatobiliary Pancreat Dis Int | 11(1), page(s): 40-50 | 10.1016/s1499-3872(11)60124-0 |
| Xu2012 | health, hepatitis B virus-induced chronic liver disease | Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium longum subsp. longum | 2012 |
Xu M, Wang B, Fu Y, Chen Y, Yang F, Lu H, Chen Y, Xu J, Li L. |
Changes of fecal Bifidobacterium species in adult patients with hepatitis B virus-induced chronic liver disease | Microbial Ecology | 63(2), page(s): 304-313 | 10.1007/s00248-011-9925-5 |
| Xu2019 | health, schizophrenia | Akkermansia muciniphila, Bifidobacterium adolescentis, Clostridium perfringens, Lactobacillus gasseri, Megasphaera elsdenii | 2019 |
Xu R, Wu B, Liang J, He F, Gu W, Li K, Luo Y, Chen J, Gao Y, Wu Z, Wang Y, Zhou W, Wang M. |
Altered gut microbiota and mucosal immunity in patients with schizophrenia | Brain, Behavior, and Immunity | 85, page(s): 120-127 | 10.1016/j.bbi.2019.06.039 |
| Yachida2019 | health, colorectal cancer, compilation | Desulfovibrio longreachensis, Oleidesulfovibrio vietnamensis, Bilophila wadsworthia, Collinsella aerofaciens, Fructilactobacillus sanfranciscensis, Fusobacterium nucleatum, Gemella morbillorum, Lachnospira eligens, Lachnospira multipara, Lancefieldella parvula, Parvimonas micra, Peptostreptococcus anaerobius, Peptostreptococcus stomatis, Phascolarctobacterium succinatutens, Porphyromonas uenonis, Schaalia odontolytica, Selenomonas sputigena, Solobacterium moorei, Streptococcus anginosus | 2019 |
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Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer | Nature Medicine | 25(6), page(s): 968-976 | 10.1038/s41591-019-0458-7 |
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Yamashiro K, Tanaka R, Urabe T, Ueno Y, Yamashiro Y, Nomoto K, Takahashi T, Tsuji H, Asahara T, Hattori N. |
Gut dysbiosis is associated with metabolism and systemic inflammation in patients with ischemic stroke | PLOS ONE | 12(2), page(s): e0171521 | 10.1371/journal.pone.0171521 |
| Yang2020a | health, colorectal cancer | Clostridium symbiosum, Erysipelatoclostridium ramosum, Fusobacterium nucleatum, Gemella morbillorum, Porphyromonas gingivalis, Roseburia Inulinivorans, Solobacterium moorei | 2020 |
Yang J, Li D, Yang Z, Dai W, Feng X, Liu Y, Jiang Y, Li P, Li Y, Tang B, Zhou Q, Qiu C, Zhang C, Xu X, Feng S, Wang D, Wang H, Wang W, Zheng Y, Zhang L, Wang W, Zhou K, Li S, Yu P. |
Establishing high-accuracy biomarkers for colorectal cancer by comparing fecal microbiomes in patients with healthy families | Gut Microbes | 11(4), page(s): 918-929 | 10.1080/19490976.2020.1712986 |
| Ye2018 | health, Behcet's disease | Bacteroides eggerthii, Collinsella aerofaciens, Dialister invisus, Fusobacterium mortiferum, Megasphaera elsdenii, Mitsuokella multacida, Paraprevotella clara, Pyramidobacter piscolens, Actinomyces sp. ph3, Stenotrophomonas rhizophila, Corynebacterium argentoratense, Actinomyces graevenitzii, Stenotrophomonas maltophilia | 2018 |
Ye Z, Zhang N, Wu C, Zhang X, Wang Q, Huang X, Du L, Cao Q, Tang J, Zhou C, Hou S, He Y, Xu Q, Xiong X, Kijlstra A, Qin N, Yang P. |
A metagenomic study of the gut microbiome in Behcet's disease | Microbiome | 6(1), page(s): 135 | 10.1186/s40168-018-0520-6 |
| Ye2020 | health, Vogt-Koyanagi-Harada disease | Candidatus Methanomethylophilus alvus, Bifidobacterium dentium, Paraprevotella clara | 2020 |
Ye Z, Wu C, Zhang N, Du L, Cao Q, Huang X, Tang J, Wang Q, Li F, Zhou C, Xu Q, Xiong X, Kijlstra A, Qin N, Yang P. |
Altered gut microbiome composition in patients with Vogt-Koyanagi-Harada disease | Gut Microbes | 11(3), page(s): 539-555 | 10.1080/19490976.2019.1700754 |
| Ying2020 | health, Chinese medicine syndrome | Leuconostoc holzapfelii, Akkermansia muciniphila, Bacteroides uniformis, Bacteroides uniformis, Barnesiella intestinihominis, Eubacterium biforme, Leuconostoc citreum, Oscillibacter valericigenes, Phocaeicola plebeius, Prevotella copri | 2020 |
Peng Y, Zhang S, Liu Z, Ji J, Wu C, Yang J, Li X, Zhang S, Liu Z, Ji J, Wu C, Yang J, Li X. |
Gut microbiota and Chinese medicine syndrome: altered fecal microbiotas in spleen (Pi)-deficient patients | Journal of Traditional Chinese Medicine | 40(1), page(s): 137-143 | PMID: 32227775 |
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Yu J, Feng Q, Wong SH, Zhang D, Liang QY, Qin Y, Tang L, Zhao H, Stenvang J, Li Y, Wang X, Xu X, Chen N, Wu WK, Al-Aama J, Nielsen HJ, Kiilerich P, Jensen BA, Yau TO, Lan Z, Jia H, Li J, Xiao L, Lam TY, Ng SC, Cheng AS, Wong VW, Chan FK, Xu X, Yang H, Madsen L, Datz C, Tilg H, Wang J, Brünner N, Kristiansen K, Arumugam M, Sung JJ, Wang J. |
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer | Gut | 66(1), page(s): 70-78 | 10.1136/gutjnl-2015-309800 |
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Potential of fecal microbiota for early-stage detection of colorectal cancer | Molecular Systems Biology | 10(11), page(s): 766 | 10.15252/msb.20145645 |
| Zeng2019 | health, polycystic ovary syndrome | Bacteroides ovatus, Bacteroides uniformis, Lachnospira eligens, Phocaeicola plebeius, Ruminococcus bicirculans | 2019 |
Zeng B, Lai Z, Sun L, Zhang Z, Yang J, Li Z, Lin J, Zhang Z. |
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Zhang L, Wu YN, Chen T, Ren CH, Li X, Liu GX. |
Relationship between intestinal microbial dysbiosis and primary liver cancer | Hepatobiliary & Pancreatic Diseases International | 18(2), page(s): 149-157 | 10.1016/j.hbpd.2019.01.002 |
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Zhang L, Han R, Zhang X, Fang G, Chen J, Li J, Xu S, Qian L, Chen W, Pan F. |
Fecal microbiota in patients with ankylosing spondylitis: Correlation with dietary factors and disease activity | Clinica Chimica Acta | 497, page(s): 189-196 | 10.1016/j.cca.2019.07.038 |
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Zhang C, Jing Y, Zhang W, Zhang J, Yang M, Du L, Jia Y, Chen L, Gong H, Li J, Gao F, Liu H, Qin C, Liu C, Wang Y, Shi W, Zhou H, Liu Z, Yang D, Li J. |
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Zhang Y, Xu J, Wang X, Ren X, Liu Y. |
Changes of intestinal bacterial microbiota in coronary heart disease complicated with nonalcoholic fatty liver disease | BMC Genomics | 20(1), page(s): 862 | 10.1186/s12864-019-6251-7 |
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Zhang X, Pan LY, Zhang Z, Zhou YY, Jiang HY, Ruan B. |
Analysis of gut mycobiota in first-episode, drug-naïve Chinese patients with schizophrenia: A pilot study | Behavioural Brain Research | 379, page(s): 112374 | 10.1016/j.bbr.2019.112374 |
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Zhao F, Feng J, Li J, Zhao L, Liu Y, Chen H, Jin Y, Zhu B, Wei Y. |
Alterations of the Gut Microbiota in Hashimoto's Thyroiditis Patients | Thyroid | 28(2), page(s): 175-186 | 10.1089/thy.2017.0395 |
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Zhao Y, Zhou J, Liu J, Wang Z, Chen M, Zhou S. |
Metagenome of Gut Microbiota of Children With Nonalcoholic Fatty Liver Disease | Frontiers in Pediatrics | 7, page(s): 518 | 10.3389/fped.2019.00518 |
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Zheng Y, Fang Z, Xue Y, Zhang J, Zhu J, Gao R, Yao S, Ye Y, Wang S, Lin C, Chen S, Huang H, Hu L, Jiang GN, Qin H, Zhang P, Chen J, Ji H. |
Specific gut microbiome signature predicts the early-stage lung cancer | Gut microbes | 11(4), page(s): 1030-1042 | 10.1080/19490976.2020.1737487 |
| Zhong2019 | health, type 2 diabetes | Akkermansia muciniphila, Bacteroides caccae, Bacteroides finegoldii, Collinsella intestinalis, Dialister invisus, Escherichia coli, Intestinibacter bartlettii, Megasphaera elsdenii, Roseburia hominis, Streptococcus salivarius | 2019 |
Zhong H, Ren H, Lu Y, Fang C, Hou G, Yang Z, Chen B, Yang F, Zhao Y, Shi Z, Zhou B, Wu J, Zou H, Zi J, Chen J, Bao X, Hu Y, Gao Y, Zhang J, Xu X, Hou Y, Yang H, Wang J, Liu S, Jia H, Madsen L, Brix S, Kristiansen K, Liu F, Li J. |
Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics | EBioMedicine | 47, page(s): 373-383 | 10.1016/j.ebiom.2019.08.048 |
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Zhou Y, Ou Z, Tang X, Zhou Y, Xu H, Wang X, Li K, He J, Du Y, Wang H, Chen Y, Nie Y. |
Alterations in the gut microbiota of patients with acquired immune deficiency syndrome | Journal of Cellular and Molecular Medicine | 22(4), page(s): 2263-2271 | 10.1111/jcmm.13508 |
| Zhou2019 | health, pulminary fibrosis | Pseudomonas aeruginosa | 2019 |
Zhou Y, Chen L, Sun G, Li Y, Huang R. |
Alterations in the gut microbiota of patients with silica-induced pulmonary fibrosis | Journal of Occupational Medicine and Toxicology | 14(5), | 10.1186/s12995-019-0225-1 |
| Zhu2018 | health, coronary artery disease | Eubacterium rectale | 2018 |
Zhu Q, Gao R, Zhang Y, Pan D, Zhu Y, Zhang X, Yang R, Jiang R, Xu Y, Qin H. |
Dysbiosis signatures of gut microbiota in coronary artery disease | Physiological Genomics | 50(10), page(s): 893-903 | 10.1152/physiolgenomics.00070.2018 |
| Zhu2020 | health, schizophrenia | Alkaliphilus oremlandii, Akkermansia muciniphila, Bifidobacterium adolescentis, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Clostridium symbiosum, Cronobacter sakazaki, Dialister invisus, Enterococcus faecium, Eubacterium siraeum, Limosilactobacillus fermentum, Limosilactobacillus oris, Phocaeicola plebeius, Streptococcus salivarius, Streptococcus vestibularis, Veillonella atypica, Veillonella dispar, Veillonella parvula | 2020 |
Zhu F, Ju Y, Wang W, Wang Q, Guo R, Ma Q, Sun Q, Fan Y, Xie Y, Yang Z, Jie Z, Zhao B, Xiao L, Yang L, Zhang T, Feng J, Guo L, He X, Chen Y, Chen C, Gao C, Xu X, Yang H, Wang J, Dang Y, Madsen L, Brix S, Kristiansen K, Jia H, Ma X. |
Metagenome-wide association of gut microbiome features for schizophrenia | Nature Communications | 11(1), page(s): 1612 | 10.1038/s41467-020-15457-9 |
| Zinkernagel2017 | health, macular degeneration | Bacteroides eggerthii, Eubacterium ventriosum, Ruminococcus torques | 2017 |
Zinkernagel MS, Zysset-Burri DC, Keller I, Berger LE, Leichtle AB, Largiadèr CR, Fiedler GM, Wolf S. |
Association of the Intestinal Microbiome with the Development of Neovascular Age-Related Macular Degeneration | Scientific Reports | 7, page(s): 40826 | 10.1038/srep40826 |
| Zuo2020 | health, COVID-19 | Actinomyces viscosus, Bacteroides nordii, Blautia obeum, Dorea formicigenerans, Erysipelatoclostridium ramosum, Eubacterium rectale, Eubacterium ventriosum, Faecalibacterium prausnitzii, Hungatella hathewayi | 2020 |
Zuo T, Zhang F, Lui GCY, Yeoh YK, Li AYL, Zhan H, Wan Y, Chung ACK, Cheung CP, Chen N, Lai CKC, Chen Z, Tso EYK, Fung KSC, Chan V, Ling L, Joynt G, Hui DSC, Chan FKL, Chan PKS, Ng SC. |
Alterations in Gut Microbiota of Patients With COVID-19 During Time of Hospitalization | Gastroenterology | 159(3), page(s): 944-955 | 10.1053/j.gastro.2020.05.048 |
| Stoll2014 | health, arthritis | Faecalibacterium prausnitzii | 2014 |
Stoll ML, Kumar R, Morrow CD, Lefkowitz EJ, Cui X, Genin A, Cron RQ, Elson CO. |
Altered microbiota associated with abnormal humoral immune responses to commensal organisms in enthesitis-related arthritis | Arthritis Research and Therapy | 16(6), page(s): 486 | 10.1186/s13075-014-0486-0 |
| Nylund2015 | health, atopic diseases, butyrate | Coprococcus eutactus, Eubacterium rectale, Butyrivibrio crossotus, Anaerostipes caccae, Anaerobutyricum hallii | 2015 |
Nylund L, Nermes M, Isolauri E, Salminen S, de Vos WM, Satokari R. |
Severity of atopic disease inversely correlates with intestinal microbiota diversity and butyrate-producing bacteria | Allergy | 70(2), page(s): 241-244 | 10.1111/all.12549 |
| Belkaid2014 | immune system, inflammation, health | 2014 |
Belkaid Y, Hand TW. |
Role of the microbiota in immunity and inflammation | Cell | 157(1), page(s): 121-141 | 10.1016/j.cell.2014.03.011 | |
| Carreto1996 | summary, general characteristics, enzymes, utilisation | Rubrobacter xylanophilus | 1996 |
Laura Carreto, Edward Moore, Fernanda Nobre, Robin Wait, Paul W. Riley, Richard J. Sharp, Milton S. Da Costa |
Rubrobacter xylanophilus sp. nov., a New Thermophilic Species Isolated from a Thermally Polluted Effluent | International Journal of Systematic and Evolutionary Microbiology | 46(2), page(s): 460-465 | 10.1099/00207713-46-2-460 |
| Cotta2004 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Atopostipes suicloacale | 2004 |
Cotta MA, Whitehead TR, Collins MD, Lawson PA. |
Atopostipes suicloacale gen. nov., sp. nov., isolated from an underground swine manure storage pit | Anaerobe | 10(3), page(s): 191-195 | 10.1016/j.anaerobe.2004.04.001 |
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Collins MD, Stubbs S, Hommez J, Devriese LA. |
Molecular taxonomic studies of Actinomyces-like bacteria isolated from purulent lesions in pigs and description of Actinomyces hyovaginalis sp. nov. | International Journal of Systematic Bacteriology | 43(3), page(s): 471-473 | 10.1099/00207713-43-3-471 |
| Heyrman2002 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Halomonas muralis | 2002 |
Heyrman J, Balcaen A, De Vos P, Swings J. |
Halomonas muralis sp. nov., isolated from microbial biofilms colonizing the walls and murals of the Saint-Catherine chapel (Castle Herberstein, Austria) | International Journal of Systematic and Evolutionary Microbiology | 52(6), page(s): 2049-2054 | 10.1099/00207713-52-6-2049 |
| Arahal2001 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Chromohalobacter salexigens, Halomonas elongata | 2001 |
Arahal DR, García MT, Vargas C, Cánovas D, Nieto JJ, Ventosa A. |
Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174 | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1457-1462 | 10.1099/00207713-51-4-1457 |
| Lee2008a | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Litchfieldia alkalitelluris | 2008 |
Lee JC, Lee GS, Park DJ, Kim CJ. |
Bacillus alkalitelluris sp. nov., an alkaliphilic bacterium isolated from sandy soil | International Journal of Systematic and Evolutionary Microbiology | 58(11), page(s): 2629-2634 | 10.1099/ijs.0.65733-0 |
| Shintani2000 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Micropruina glycogenica | 2000 |
Shintani T, Liu WT, Hanada S, Kamagata Y, Miyaoka S, Suzuki T, Nakamura K. |
Micropruina glycogenica gen. nov., sp. nov., a new Gram-positive glycogen-accumulating bacterium isolated from activated sludge | International Journal of Systematic and Evolutionary Microbiology | 50(1), page(s): 201-207 | 10.1099/00207713-50-1-201 |
| Nobre1996 | summary, general characteristics, genetics, taxonomy | Meiothermus silvanus, Meiothermus chliarophilus, Meiothermus ruber | 1996 |
M. Fernanda Nobre, Hans G. Truper, Milton S. Da Costa |
Transfer of Thermus ruber (Loginova et al. 1984), Thermus silvanus (Tenreiro et al. 1995), and Thermus chliarophilus (Tenreiro et al. 1995) to Meiothermus gen. nov. as Meiothermus ruber comb. nov., Meiothermus silvanus comb. nov., and Meiothermus chliarophilus comb. nov., Respectively, and Emendation of the Genus Thermus | International Journal of Systematic Bacteriology | 46(2), page(s): 604-606 | 10.1099/00207713-46-2-604 |
| Tenreiro1995 | summary, general characteristics, enzymes, utilisation | Thermus silvanus, Thermus chliarophilus | 1995 |
Tenreiro S, Nobre MF, da Costa MS. |
Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., two new species related to thermus ruber but with lower growth temperatures | International Journal of Systematic Bacteriology | 45(4), page(s): 633-639 | 10.1099/00207713-45-4-633 |
| Li2017 | summary, general characteristics, enzymes, utilisation | Paludicola psychrotolerans | 2017 |
Li Y, Zhang LL, Liu L, Tian YQ, Liu XF, Li WJ, Dai YM. |
Paludicola psychrotolerans gen. nov., sp. nov., a novel psychrotolerant chitinolytic anaerobe of the family Ruminococcaceae | International Journal of Systematic and Evolutionary Microbiology | 67(10), page(s): 4100-4103 | 10.1099/ijsem.0.002260 |
| Okada2003 | health, ulceration | Okadaella gastrococcus | 2003 |
Takayuki Okada, Graham Adkins, Malcolm Jones, Jeffery Searle, Rodney McDougall, Jenny Robson, John Bradley |
The presence of Okadaella gastrococcus in the gastric erosive ulcers | The American Journal of Gastroenterology | 98(9), page(s): S43 | 10.1016/j.amjgastroenterol.2003.09.010 |
| Okada2014 | health, ulceration, lesions | Okadaella gastrococcus | 2014 |
Okada T, Adkins G. |
Unidentified intralesional and intracellular coccoid microorganism discovered in the young man with a diffuse erosive gastroduodenitis and multiple superficial ulcerations | BMJ Case Reports | page(s): 1-5 | 10.1136/bcr-2013-202418 |
| Woo2010 | oral cavity | Leptotrichia hongkongensis | 2010 |
Woo PC, Wong SS, Teng JL, Leung KW, Ngan AH, Zhao DQ, Tse H, Lau SK, Yuen KY. |
Leptotrichia hongkongensis sp. nov., a novel Leptotrichia species with the oral cavity as its natural reservoir | Journal of Zhejiang University Science B | 11(6), page(s): 391-401 | 10.1631/jzus.B1000056 |
| Dore1990 | metabolites | Syntrophococcus sucromutans | 1990 |
Doré J, Bryant MP. |
Metabolism of One-Carbon Compounds by the Ruminal Acetogen Syntrophococcus sucromutans | Applied and Environmental Microbiology | 56(4), page(s): 984-989 | 10.1128/aem.56.4.984-989.1990 |
| Krumholz1986 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Syntrophococcus sucromutans | 1986 |
Krumholz, L.R., Bryant, M.P. |
Syntrophococcus sucromutans sp. nov. gen. nov. uses carbohydrates as electron donors and formate, methoxymonobenzenoids or Methanobrevibacter as electron acceptor systems | Archives of Microbiology | 143, page(s): 313-318 | 10.1007/BF00412795 |
| Paster1993 | taxonomy | Peptostreptococcus anaerobius, Clostridium sticklandii, Clostridium aminophilum | 1993 |
Paster BJ, Russell JB, Yang CM, Chow JM, Woese CR, Tanner R. |
Phylogeny of the ammonia-producing ruminal bacteria Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov. | International Journal of Systematic Bacteriology | 43(1), page(s): 107-110 | 10.1099/00207713-43-1-107 |
| Fisher2008 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation, image | Alkaliphilus oremlandii | 2008 |
Fisher E, Dawson AM, Polshyna G, Lisak J, Crable B, Perera E, Ranganathan M, Thangavelu M, Basu P, Stolz JF. |
Transformation of inorganic and organic arsenic by Alkaliphilus oremlandii sp. nov. strain OhILAs | Annals of the New York Academy of Sciences | 1125, page(s): 230-241 | 10.1196/annals.1419.006 |
| Tank2015 | summary, general characteristics, utilisation | Chloracidobacterium thermophilum | 2015 |
Tank M, Bryant DA. |
Chloracidobacterium thermophilum gen. nov., sp. nov.: an anoxygenic microaerophilic chlorophotoheterotrophic acidobacterium | International Journal of Systematic and Evolutionary Microbiology | 65(5), page(s): 1426-1430 | 10.1099/ijs.0.000113 |
| Bryant2007 | summary, taxonomy | Chloracidobacterium thermophilum | 2007 |
Bryant DA, Costas AM, Maresca JA, Chew AG, Klatt CG, Bateson MM, Tallon LJ, Hostetler J, Nelson WC, Heidelberg JF, Ward DM. |
Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium | Science | 317(Article 5837), page(s): 523-526 | 10.1126/science.1143236 |
| Saini2021 | genetics, taxonomy | Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum | 2021 |
Saini MK, Sebastian A, Shirotori Y, Soulier NT, Garcia Costas AM, Drautz-Moses DI, Schuster SC, Albert I, Haruta S, Hanada S, Thiel V, Tank M, Bryant DA. |
Genomic and Phenotypic Characterization of Chloracidobacterium Isolates Provides Evidence for Multiple Species | Frontiers in Microbiology | 12(Article 704168), | 10.3389/fmicb.2021.704168 |
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Salipante SJ, Sengupta DJ, Cummings LA, Robinson A, Kurosawa K, Hoogestraat DR, Cookson BT. |
Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates | International Journal of Medical Microbiology | 304(8), page(s): 1001-1010 | 10.1016/j.ijmm.2014.07.003 |
| Jackman1987 | health, endocarditis | Corynebacterium jeikeium | 1987 |
Peter J.H. Jackman, David G. Pitcher, Stephanie Pelczynska, Pauline Borman |
Classification of corynebacteria associated with endocarditis (group JK) as Corynebacterium jeikeium sp. nov. | Systematic and Applied Microbiology | 9(1-2), page(s): 83-90 | 10.1016/S0723-2020(87)80060-7 |
| Yoon2007b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Coraliomargarita akajimensis | 2007 |
Yoon J, Yasumoto-Hirose M, Katsuta A, Sekiguchi H, Matsuda S, Kasai H, Yokota A. |
Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan | International Journal of Systematic and Evolutionary Microbiology | 57(5), page(s): 959-963 | 10.1099/ijs.0.64755-0 |
| Hardman1960a | summary, general characteristics, acid from carbohydrates, metabolites, utilisation | Clostridium aminobutyricum | 1960 |
Hardman, J.K., and Stadtman, T.C. |
Metabolism of omega-amino acids. I. Fermentation of gamma-aminobutyric acid by Clostridium aminobutyricum n. sp. | Journal of Bacteriology | 79(4), page(s): 544-548 | 10.1128/jb.79.4.544-548.1960 |
| Frohlich1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Desulfovibrio intestinalis | 1999 |
Fröhlich J, Sass H, Babenzien HD, Kuhnigk T, Varma A, Saxena S, Nalepa C, Pfeiffer P, König H. |
Isolation of Desulfovibrio intestinalis sp. nov. from the hindgut' of the lower termite Mastotermes darwiniensis | Canadian Journal of Microbiology | 45(2), page(s): 145-152 | 10.1139/w98-222. |
| Redburn1994 | summary, general characteristics, metabolites, utilisation | Desulfovibrio longreachensis | 1994 |
Redburn AC, Patel BK. |
Desulfovibrio longreachii sp. nov., a sulfate-reducing bacterium isolated from the Great Artesian Basin of Australia | FEMS Microbiology Letters | 115(1), page(s): 33-38 | 10.1111/j.1574-6968.1994.tb06610.x |
| Rauschenbach2011 | summary, general characteristics, utilisation, metabolites | Desulfurispirillum indicum | 2011 |
Rauschenbach I, Narasingarao P, Häggblom MM. |
Desulfurispirillum indicum sp. nov., a selenate- and selenite-respiring bacterium isolated from an estuarine canal | International Journal of Systematic and Evolutionary Microbiology | 61(3), page(s): 654-658 | 10.1099/ijs.0.022392-0 |
| Sakai2003 | summary, general characteristics, enzymes | Fucophilus fucoidanolyticus | 2003 |
Sakai, Takeshi; Ishizuka, Kumiko; Kato, Ikunoshin |
Isolation and Characterization of a Fucoidan-Degrading Marine Bacterium | Marine Biotechnology | 5(5), page(s): 409-416 | 10.1007/s10126-002-0118-6 |
| VanAssche1977 | summary, general characteristics, acid from carbohydrates, metabolites, utilisation, antibiotics | Fusobacterium perfoetens | 1977 |
Paul F. Van Assche, Albert T. Wilssens |
Fusobacterium perfoetens (Tissier) Moore and Holdeman 1973: Description and Proposed Neotype Strain | International Journal of Systematic Bacteriology | 27(1), page(s): 1-5 | 10.1099/00207713-27-1-1 |
| Boden2017 | taxonomy, general characteristics, summary, metabolites | Hydrogenovibrio crunogenus | 2017 |
Boden R, Scott KM, Williams J, Russel S, Antonen K, Rae AW, Hutt LP. |
An evaluation of Thiomicrospira, Hydrogenovibrio and Thioalkalimicrobium: reclassification of four species of Thiomicrospira to each Thiomicrorhabdus gen. nov. and Hydrogenovibrio, and reclassification of all four species of Thioalkalimicrobium to Thiomicrospira | International Journal of Systematic and Evolutionary Microbiology | 67(5), page(s): 1140-1151 | 10.1099/ijsem.0.001855 |
| Jannasch1985 | summary, general characteristics, utilisation | Thiomicrospira crunogena | 1985 |
Holger W. Jannasch, Carl O. Wirsen, Lesley A. Robertson |
Thiomicrospira crunogena sp. nov., a Colorless, Sulfur-Oxidizing Bacterium from a Deep-Sea Hydrothermal Vent | International Journal of Systematic and Evolutionary Microbiology | 35(4), | 10.1099/00207713-35-4-422 |
| DeBruyne2007 | fermented foods | Leuconostoc holzapfelii | 2007 |
De Bruyne K, Schillinger U, Caroline L, Boehringer B, Cleenwerck I, Vancanneyt M, De Vuyst L, Franz CMAP, Vandamme P. |
Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species | International Journal of Systematic and Evolutionary Microbiology | 57(12), page(s): 2952-2959 | 10.1099/ijs.0.65292-0 |
| Borrel2012 | genetics, genome, summary | Candidatus Methanomethylophilus alvus | 2012 |
Borrel, G., Harris, H.M., Tottey, W., Mihajlovski, A., Parisot, N., Peyretaillade, E., Peyret, P., Gribaldo, S., O'Toole, P.W., and Brugere, J.F. |
Genome sequence of 'Candidatus Methanomethylophilus alvus' Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens | Journal of Bacteriology | 194(24), page(s): 6944-6945 | 10.1128/JB.01867-12 |
| Logan2000a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, antibiotics | Bacillus fumarioli | 2000 |
Logan NA, Lebbe L, Hoste B, Goris J, Forsyth G, Heyndrickx M, Murray BL, Syme N, Wynn-Williams DD, De Vos P. |
Aerobic endospore-forming bacteria from geothermal environments in northern Victoria Land, Antarctica, and Candlemas Island, South Sandwich archipelago, with the proposal of Bacillus fumarioli sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 50(5), page(s): 1741-1753 | 10.1099/00207713-50-5-1741 |
| Koops1991 | summary, general characteristics, utilisation | Nitrosomonas communis, Nitrosomonas ureae, Nitrosomonas aestuarii, Nitrosomonas marina, Nitrosomonas nitrosa, Nitrosomonas eutropha, Nitrosomonas oligotropha, Nitrosomonas halophila | 1991 |
H. P. Koops, B. Bottcher, U. C. Moller, A. Pommerening-Roser, G. Stehr |
Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas ureae sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov. and Nitrosomonas halophila sp. nov. | Microbiology | 137, page(s): 1689-1699 | 10.1099/00221287-137-7-1689 |
| Dang1996 | summary, general characteristics, metabolites, utilisation, antibiotics, image | Desulfovibrio vietnamensis | 1996 |
Phuong Nga Dang, Thi Cam Ha Dang, Thuy Hien Lai, Helga Stan-Lotter |
Desulfovibrio vietnamensis sp. nov., a Halophilic Sulfate-Reducing Bacterium from Vietnamese Oil Fields | Anaerobe | 2(6), page(s): 385-392 | 10.1006/anae.1996.0049 |
| Jogler2013 | summary, general characteristics, enzymes, utilisation, taxonomy, genetics | Sphingorhabdus planktonica, Parasphingorhabdus flavimaris | 2013 |
Jogler M, Chen H, Simon J, Rohde M, Busse HJ, Klenk HP, Tindall BJ, Overmann J. |
Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 63(4), page(s): 1342-1349 | 10.1099/ijs.0.043133-0 |
| Yoon2005e | summary, general characteristics, enzymes, utilisation, metabolites | Sphingopyxis flavimaris | 2005 |
Yoon JH, Oh TK. |
Sphingopyxis flavimaris sp. nov., isolated from sea water of the Yellow Sea in Korea | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 369-373 | 10.1099/ijs.0.63218-0 |
| Feng2020 | genetics, taxonomy, summary, general characteristics | Novosphingopyxis baekryungensis, Parasphingorhabdus pacifica, Parasphingorhabdus flavimaris, Parasphingorhabdus litoris, Parasphingorhabdus marina | 2020 |
Feng, G.-D., Zhang, X.-J., Yang, S.-Z., Li, A.-Z., Yao, Q., and Zhu, H. |
Transfer of Sphingorhabdus marina, Sphingorhabdus litoris, Sphingorhabdus flavimaris and Sphingorhabdus pacifica corrig. into the novel genus Parasphingorhabdus gen. nov. and Sphingopyxis baekryungensis into the novel genus Novosphingopyxis gen. nov. within the family Sphingomonadaceae. | International Journal of Systematic and Evolutionary Microbiology | 70(3), page(s): 2147-2154 | 10.1099/ijsem.0.004033 |
| vanGylswyk1996 | butyrate | Pseudobutyrivibrio ruminis | 1996 |
van Gylswyk, N.O., Hippe, H., and Rainey, F.A. |
Pseudobutyrivibrio ruminis gen. nov., sp. nov., a Butyrate-Producing Bacterium from the Rumen That Closely Resembles Butyrivibrio fibrisolvens in Phenotype | International Journal of Systematic Bacteriology | 46(2), page(s): 559-563 | 10.1099/00207713-46-2-559 |
| Rhee2002 | summary, genetics, taxonomy, image | Symbiobacterium toebii | 2002 |
Rhee SK, Jeon CO, Bae JW, Kim K, Song JJ, Kim JJ, Lee SG, Kim HI, Hong SP, Choi YH, Kim SM, Sung MH. |
Characterization of Symbiobacterium toebii, an obligate commensal thermophile isolated from compost | Extremophiles | 6(1), page(s): 57-64 | 10.1007/s007920100233 |
| Sung2003 | summary, general characteristics, enzymes | Symbiobacterium toebii | 2003 |
Sung, M., Bae, J., Kim, J., Kim, K., Song, J.J., Rhee, S., Jeon, C.O., Choi, Y., Hong, S., Lee, S., Ha, J.S., & Kang, G.T. |
Symbiobacterium toebii sp. nov., commensal thermophile isolated from Korean compost | Journal of Microbiology and Biotechnology | 13(6), page(s): 1013-1017 | |
| Sokolova2007 | summary, general characteristics, utilisation, image | Thermolithobacter carboxydivorans, Thermolithobacter ferrireducens | 2007 |
Sokolova T, Hanel J, Onyenwoke RU, Reysenbach AL, Banta A, Geyer R, González JM, Whitman WB, Wiegel J. |
Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov. | Extremophiles | 11(1), page(s): 145-57 | 10.1007/s00792-006-0022-5 |
| Borrel2013a | summary, general characteristics, metabolites, utilisation | Candidatus Methanomethylophilus alvus | 2013 |
Borrel G, O'Toole PW, Harris HM, Peyret P, Brugère JF, Gribaldo S. |
Phylogenomic data support a seventh order of Methylotrophic methanogens and provide insights into the evolution of Methanogenesis | Genome Biology and Evolution | 5(10), page(s): 1769-1780 | 10.1093/gbe/evt128 |
| Romanenko2009 | food source (crustacean) | Psychrobacter fulvigenes | 2009 |
Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV. |
Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan | International Journal of Systematic and Evolutionary Microbiology | 59(6), page(s): 1480-1486 | 10.1099/ijs.0.007195-0 |
| Dong2022 | health, brain-gut, obesity | 2022 |
Dong TS, Guan M, Mayer EA, Stains J, Liu C, Vora P, Jacobs JP, Lagishetty V, Chang L, Barry RL, Gupta A. |
Obesity is associated with a distinct brain-gut microbiome signature that connects Prevotella and Bacteroides to the brain's reward center | Gut Microbes | 14(1), page(s): 2051999 | 10.1080/19490976.2022.2051999 | |
| Robertson2005 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Mucispirillum schaedleri | 2005 |
Robertson BR, O'Rourke JL, Neilan BA, Vandamme P, On SLW, Fox JG, Lee A. |
Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1199-1204 | 10.1099/ijs.0.63472-0 |
| Riegel1997a | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Corynebacterium singulare | 1997 |
Riegel P, Ruimy R, Renaud FN, Freney J, Prevost G, Jehl F, Christen R, Monteil H. |
Corynebacterium singulare sp. nov., a new species for urease-positive strains related to Corynebacterium minutissimum | International Journal of Systematic Bacteriology | 47(4), page(s): 1092-1096 | 10.1099/00207713-47-4-1092 |
| Yanagita1997 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Sporolactobacillus nakayamae subsp. nakayamae, Sporolactobacillus nakayamae subsp. racemicus, Sporolactobacillus terrae, Sporolactobacillus kofuensis, Sporolactobacillus lactosus | 1997 |
Yanagida, F., Suzuki, K.I., Kozaki, M., and Komagata, K. |
Proposal of Sporolactobacillus nakayamae subsp. nakayamae sp. nov., subsp. nov., Sporolactobacillus nakayamae subsp. racemicus subsp. nov., Sporolactobacillus terrae sp. nov., Sporolactobacillus kofuensis sp. nov., and Sporolactobacillus lactosus sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 47(2), page(s): 499-504 | 10.1099/00207713-47-2-499 |
| Mahmood2007 | mannitol, lactulose, rhamnose, zinc carnosine | 2007 |
Mahmood A, FitzGerald AJ, Marchbank T, Ntatsaki E, Murray D, Ghosh S, Playford RJ. |
Zinc carnosine, a health food supplement that stabilises small bowel integrity and stimulates gut repair processes | Gut | 56(2), page(s): 168-175 | 10.1136/gut.2006.099929 | |
| Jeong2021 | genetics, taxonomy, compilation | 2021 |
Jeong J, Yun K, Mun S, Chung WH, Choi SY, Nam YD, Lim MY, Hong CP, Park C, Ahn YJ, Han K. |
The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology | Scientific Reports | 11(1), page(s): 1727 | 10.1038/s41598-020-80826-9 | |
| Laue2020 | health, infant gut, autism | Bifidobacterium adolescentis, Collinsella aerofaciens, Bacteroides caccae, Bacteroides uniformis, Prevotella copri, Lacticaseibacillus zeae, Clostridium perfringens, Ruminococcus gnavus, Ruminococcus torques, Blautia obeum, Blautia producta, Enterocloster citroniae, Dorea formicigenerans, Butyricicoccus pullicaecorum, Faecalibacterium prausnitzii, Veillonella dispar, Veillonella dispar, Eubacterium dolichum, Haemophilus parainfluenzae, Akkermansia muciniphila, Varibaculum cambriense, Corynebacterium pseudodiptheriticum, Bifidobacterium animalis, Adlercreutzia equolifaciens, Bacteroides fragilis, Bacteroides xylanisolvens, Anaerofustis stercorihominis, Eubacterium limosum, Flavonifractor plautii, Clostridium ramosum | 2020 |
Laue HE, Korrick SA, Baker ER, Karagas MR, Madan JC. |
Prospective associations of the infant gut microbiome and microbial function with social behaviors related to autism at age 3 years | Scientific Reports | 10(1), page(s): 15515 | 10.1038/s41598-020-72386-9 |
| Elomari1996 | water source | Pseudomonas veronii | 1996 |
Elomari M, Coroler L, Hoste B, Gillis M, Izard D, Leclerc H. |
DNA relatedness among Pseudomonas strains isolated from natural mineral waters and proposal of Pseudomonas veronii sp. nov. | International Journal of Systematic Bacteriology | 46(4), page(s): 1138-1144 | 10.1099/00207713-46-4-1138 |
| LopezSiles2018 | health, inflammatory bowel disease | Akkermansia muciniphila, Faecalibacterium prausnitzii | 2018 |
Lopez-Siles M, Enrich-Capó N, Aldeguer X, Sabat-Mir M, Duncan SH, Garcia-Gil LJ, Martinez-Medina M. |
Alterations in the Abundance and Co-occurrence of Akkermansia muciniphila and Faecalibacterium prausnitzii in the Colonic Mucosa of Inflammatory Bowel Disease Subjects. | Frontiers in Cellular and Infection Microbiology | 8, page(s): 281 | 10.3389/fcimb.2018.00281 |
| Luna2016 | health, autism | Acetivibrio clariflavus, Akkermansia muciniphila, Alistipes putredinis, Anaerotignum lactatifermentans, Bacteroides eggerthii, Bacteroides uniformis, Bifidobacterium adolescentis, Bilophila wadsworthia, Blautia luti, Clostridium disporicum, Clostridium perfringens, Clostridium tertium, Coprococcus catus, Coprococcus comes, Dorea formicigenerans, Enterocloster aldenensis, Enterocloster bolteae, Eubacterium ramulus, Eubacterium ventriosum, Faecalibacterium prausnitzii, Flavonifracter plautii, Hungatella hathewayi, Odoribacter splanchnicus, Oscillibacter valericigenes, Parabacteriodes distasonis, Parasutterella extrementihominis, Phascolarctobacterium faecium, Romboutsia lituseburensis, Roseburia intestinalis, Ruminococcus lactaris, Turicibacter sanguinis, Tyzzerella nexilis | 2016 |
Luna RA, Oezguen N, Balderas M, Venkatachalam A, Runge JK, Versalovic J, Veenstra-VanderWeele J, Anderson GM, Savidge T, Williams KC. |
Distinct Microbiome-Neuroimmune Signatures Correlate With Functional Abdominal Pain in Children With Autism Spectrum Disorder. | Cellular and Molecular Gastroenterology and Hepatology | 3(2), page(s): 218-230 | 10.1016/j.jcmgh.2016.11.008 |
| Magnusson2015 | health, cognitive | 2015 |
Magnusson KR, Hauck L, Jeffrey BM, Elias V, Humphrey A, Nath R, Perrone A, Bermudez LE. |
Relationships between diet-related changes in the gut microbiome and cognitive flexibility. | Neuroscience | 300, page(s): 128-140 | 10.1016/j.neuroscience.2015.05.016 | |
| Mangifesta2018 | health, colorectal cancer | Fusobacterium nucleatum | 2018 |
Mangifesta M, Mancabelli L, Milani C, Gaiani F, de'Angelis N, de'Angelis GL, van Sinderen D, Ventura M, Turroni F. |
Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer. | Scientific Reports | 8(1), page(s): Article 13974 | 10.1038/s41598-018-32413-2 |
| Mondot2011 | health, Crohn's disease | Alistipes putredinis, Bifidobacterium bifidum, Enterobacter cowanii, Enterococcus faecium, Escherichia coli, Eubacterium rectale, Faecalibacterium prausnitzii, Oscillibacter valericigenes, Parabacteroides distasonis, Phocaeicola vulgatus, Proteus vulgaris, Ruminococcus albus, Ruminococcus bromii | 2011 |
Mondot S, Kang S, Furet JP, Aguirre de Carcer D, McSweeney C, Morrison M, Marteau P, Doré J, Leclerc M. |
Highlighting new phylogenetic specificities of Crohn's disease microbiota. | Inflammatory Bowel Diseases | 17(1), page(s): 185-192 | 10.1002/ibd.21436 |
| Nemec2003 | clinical sources | Acinetobacter parvus | 2003 |
Nemec A, Dijkshoorn L, Cleenwerck I, De Baere T, Janssens D, van der Reijden TJK, Ježek P, Vaneechoutte M. |
Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens. | International Journal of Systematic and Evolutionary Microbiology | 53(5), page(s): 1563-1567 | 10.1099/ijs.0.02631-0 |
| Moller1996 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Actinobacillus minor, Actinobacillus porcinus, Actinobacillus indolicus | 1996 |
Møller K, Fussing V, Grimont PA, Paster BJ, Dewhirst FE, Kilian M. |
Actinobacillus minor sp. nov., Actinobacillus porcinus sp. nov., and Actinobacillus indolicus sp. nov., three new V factor-dependent species from the respiratory tract of pigs. | International Journal of Systematic Bacteriology | 46(4), page(s): 951-956 | 10.1099/00207713-46-4-951 |
| Renvoise2010 | osteo-articular, clinical sources | Actinomyces timonensis | 2010 |
Renvoise A, Raoult D, Roux V. |
Actinomyces timonensis sp. nov., isolated from a human clinical osteo-articular sample. | International Journal of Systematic and Evolutionary Microbiology | 60(7), page(s): 1516-1521 | 10.1099/ijs.0.012914-0 |
| Hasegawa1978 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Actinosynnema mirum | 1978 |
Hasegawa, T., Lechevalier, M.P., Lechevalier, H.A. |
New Genus of the Actinomycetales: Actinosynnema gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 28(2), page(s): 304-310 | 10.1099/00207713-28-2-304 |
| Rickard2005 | water source | Adhaeribacter aquaticus | 2005 |
Rickard AH, Stead AT, O'May GA, Lindsay S, Banner M, Handley PS, Gilbert P. |
Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 821-829 | 10.1099/ijs.0.63337-0 |
| Takai2001 | summary, general characteristics, utilisation | Alkaliphilus transvaalensis | 2001 |
Takai K, Moser DP, Onstott TC, Spoelstra N, Pfiffner SM, Dohnalkova A, Fredrickson JK. |
Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 10245-1256 | 10.1099/00207713-51-4-1245 |
| Lechevalier1986 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Amycolatopsis mediterranei, Amycolatopsis sulphurea, Amycolatopsis orientalis, Amycolatopsis orientalis subsp. lurida, Amycolatopsis rugosa | 1986 |
Lechevalier, M.P., Prauser, H., Labeda, D.P., and Ruan, J.S. |
Two New Genera of Nocardioform Actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov. | International Journal of Systematic and Evolutionary Microbiology | 36(1), | 10.1099/00207713-36-1-29 |
| Rediers2004 | taxonomy | Azotobacter vinelandii | 2004 |
Rediers H, Vanderleyden J, De Mot R. |
Azotobacter vinelandii: a Pseudomonas in disguise? | Microbiology (Reading) | 150(5), page(s): 1117-1119 | 10.1099/mic.0.27096-0 |
| Collins1988a | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Brachybacterium faecium | 1988 |
Collins, M.D., Brown, J., and Jones, D. |
Brachybacterium faecium gen. nov., sp. nov., a Coryneform Bacterium from Poultry Deep Litter | International Journal of Systematic Bacteriology | 38(1), page(s): 45-48 | 10.1099/00207713-38-1-45 |
| Buczolits2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Brachybacterium muris | 2003 |
Buczolits S, Schumann P, Weidler G, Radax C, Busse HJ. |
Brachybacterium muris sp. nov., isolated from the liver of a laboratory mouse strain. | International Journal of Systematic and Evolutionary Microbiology | 53(6), page(s): 1955-1960 | 10.1099/ijs.0.02728-0 |
| McBride1993 | infections | Brevibacterium mcbrellneri | 1993 |
McBride ME, Ellner KM, Black HS, Clarridge JE, Wolf JE. |
A new Brevibacterium sp. isolated from infected genital hair of patients with white piedra. | Journal of Medical Microbiology | 39(4), page(s): 255-261 | 10.1099/00222615-39-4-255 |
| Sessitsch2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia phytofirmans | 2005 |
Sessitsch A, Coenye T, Sturz AV, Vandamme P, Barka EA, Salles JF, Van Elsas JD, Faure D, Reiter B, Glick BR, Wang-Pruski G, Nowak J. |
Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties. | International Journal of Systematic and Evolutionary Microbiology | 55(3), page(s): 1187-1192 | 10.1099/ijs.0.63149-0 |
| Gillis1995 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Burkholderia vietnamiensis | 1995 |
Gillis, M., Van, T.V., Bardin, R., Goor, M., Hebbar, P., Willems, A., Segers, P., Kersters, K., Heulin, T., and Fernandez, M.P. |
Polyphasic Taxonomy in the Genus Burkholderia Leading to an Emended Description of the Genus and Proposition of Burkholderia vietnamiensis sp. nov. for N2-Fixing Isolates from Rice in Vietnam | International Journal of Systematic and Evolutionary Microbiology | 45(2), page(s): 274-289 | 10.1099/00207713-45-2-274 |
| Blackall1996 | Candidatus Microthrix parvicella | 1996 |
Blackall LL, Stratton H, Bradford D, Dot TD, Sjörup C, Seviour EM, Seviour RJ. |
"Candidatus Microthrix parvicella", a filamentous bacterium from activated sludge sewage treatment plants. | International Journal of Systematic Bacteriology | 46(1), page(s): 344-346 | 10.1099/00207713-46-1-344 | |
| Han2004 | health, cerebral aneurysm | Cardiobacterium valvarum | 2004 |
Han XY, Meltzer MC, Woods JT, Fainstein V. |
Endocarditis with ruptured cerebral aneurysm caused by Cardiobacterium valvarum sp. nov. | Journal of Clinical Microbiology | 42(4), page(s): 1590-1595 | 10.1128/JCM.42.4.1590-1595.2004 |
| Han2005a | oral cavity | Cardiobacterium valvarum | 2005 |
Han XY, Falsen E. |
Characterization of oral strains of Cardiobacterium valvarum and emended description of the organism. | Journal of Clinical Microbiology | 43(5), page(s): 2370-2374 | 10.1128/JCM.43.5.2370-2374.2005 |
| Busti2006 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Catenulispora acidiphila | 2006 |
Busti E, Cavaletti L, Monciardini P, Schumann P, Rohde M, Sosio M, Donadio S. |
Catenulispora acidiphila gen. nov., sp. nov., a novel, mycelium-forming actinomycete, and proposal of Catenulisporaceae fam. nov. | International Journal of Systematic and Evolutionary Microbiology | 56(8), page(s): 1741-1746 | 10.1099/ijs.0.63858-0 |
| Lai1983 | oral cavity, lesions | Centipeda periodontii | 1983 |
Lai, C.H., Males, B.M., Dougherty, P.A., Berthold, P., and Listgarten, M.A. |
Centipeda periodontii gen. nov., sp. nov. from Human Periodontal Lesions | International Journal of Systematic and Evolutionary Microbiology | 33(3), page(s): 628-635 | 10.1099/00207713-33-3-628 |
| Greetham2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites | Clostridium colicanis | 2003 |
Greetham HL, Gibson GR, Giffard C, Hippe H, Merkhoffer B, Steiner U, Falsen E, Collins MD. |
Clostridium colicanis sp. nov., from canine faeces. | International Journal of Systematic and Evolutionary Microbiology | 53(1), page(s): 259-262 | 10.1099/ijs.0.02260-0 |
| Furness1976 | health, urinary tract infection | Corynebacterium genitalium | 1976 |
Furness G, Evangelista AT. |
Infection of a nonspecific urethritis patient and his consort with a pathogenic species of nonspecific urethritis Corynebacteria, Corynebacterium genitalium, N. SP. | Investigative Urology | 14(3), page(s): 202-205 | PMID: 1036491 |
| Kuever1999 | summary, general characteristics, enzymes, utilisation, metabolites | Desulfoscipio gibsoniae | 1999 |
Kuever, J., Rainey, F.A., and Hippe, H. |
Description of Desulfotomaculum sp. Groll as Desulfotomaculum gibsoniae sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 49(4), page(s): 1801-1808 | 10.1099/00207713-49-4-1801 |
| Geider2006 | food contamination | Erwinia tasmaniensis | 2006 |
Geider K, Auling G, Du Z, Jakovljevic V, Jock S, Völksch B. |
Erwinia tasmaniensis sp. nov., a non-phytopathogenic bacterium from apple and pear trees. | International Journal of Systematic and Evolutionary Microbiology | 56(12), page(s): 2937-2943 | 10.1099/ijs.0.64032-0 |
| Vartoukian2013 | oral cavity | Fretibacterium fastidiosum | 2013 |
Vartoukian SR, Downes J, Palmer RM, Wade WG. |
Fretibacterium fastidiosum gen. nov., sp. nov., isolated from the human oral cavity. | International Journal of Systematic and Evolutionary Microbiology | 63(2), page(s): 458-463 | 10.1099/ijs.0.041038-0 |
| Luedemann1968 | summary, general characteristics, acid from carbohydrates, utilisation | Geodermatophilus obscurus | 1968 |
Luedemann GM. |
Geodermatophilus, a new genus of the Dermatophilaceae (Actinomycetales). | Journal of Bacteriology | 96(5), page(s): 1848-1858 | 10.1128/jb.96.5.1848-1858.1968 |
| Irlinger2005 | fermented foods | Glutamicibacter arilaitensis, Arthrobacter bergerei | 2005 |
Irlinger F, Bimet F, Delettre J, Lefèvre M, Grimont PAD. |
Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 457-462 | 10.1099/ijs.0.63125-0 |
| Kummer1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Gordonia alkanivorans | 1999 |
Kummer C, Schumann P, Stackebrandt E. |
Gordonia alkanivorans sp. nov., isolated from tar-contaminated soil. | International Journal of Systematic Bacteriology | 49(4), page(s): 1513-1522 | 10.1099/00207713-49-4-1513 |
| Vancanneyt2004a | fermented food | Lactobacillus kefiranofaciens | 2004 |
Vancanneyt M, Mengaud J, Cleenwerck I, Vanhonacker K, Hoste B, Dawyndt P, Degivry MC, Ringuet D, Janssens D, Swings J. |
Reclassification of Lactobacillus kefirgranum Takizawa et al. 1994 as Lactobacillus kefiranofaciens subsp. kefirgranum subsp. nov. and emended description of L. kefiranofaciens Fujisawa et al. 1988. | International Journal of Systematic and Evolutionary Microbiology | 54(2), page(s): 551-556 | 10.1099/ijs.0.02912-0 |
| Bjorkroth2000 | fermented foods | Leuconostoc gelidum subsp. gasicomitatum | 2000 |
Björkroth KJ, Geisen R, Schillinger U, Weiss N, De Vos P, Holzapfel WH, Korkeala HJ, Vandamme P. |
Characterization of Leuconostoc gasicomitatum sp. nov., associated with spoiled raw tomato-marinated broiler meat strips packaged under modified-atmosphere conditions. | Applied and Environmental Microbiology | 66(9), page(s): 3764-3772 | 10.1128/AEM.66.9.3764-3772.2000 |
| Rahkila2014 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, genetics, taxonomy | Leuconostoc gelidum subsp. gasicomitatum, Leuconostoc gelidum subsp. aenigmaticum, Leuconostoc gelidum subsp. gelidum | 2014 |
Rahkila R, De Bruyne K, Johansson P, Vandamme P, Björkroth J. |
Reclassification of Leuconostoc gasicomitatum as Leuconostoc gelidum subsp. gasicomitatum comb. nov., description of Leuconostoc gelidum subsp. aenigmaticum subsp. nov., designation of Leuconostoc gelidum subsp. gelidum subsp. nov. and emended description of Leuconostoc gelidum. | International Journal of Systematic and Evolutionary Microbiology | 64(4), page(s): 1290-1295 | 10.1099/ijs.0.058263-0 |
| Kim2000 | fermented foods | Leuconostoc kimchii | 2000 |
Kim J, Chun J, Han Hu. |
Leuconostoc kimchii sp. nov., a new species from kimchi. | International Journal of Systematic and Evolutionary Microbiology | 50(5), page(s): 1915-1919 | 10.1099/00207713-50-5-1915 |
| Nakatsu2006 | summary, general characteristics, enzymes, utilisation | Methylibium petroleiphilum | 2006 |
Nakatsu CH, Hristova K, Hanada S, Meng XY, Hanson JR, Scow KM, Kamagata Y. |
Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria. | International Journal of Systematic and Evolutionary Microbiology | 56(5), page(s): 983-989 | 10.1099/ijs.0.63524-0 |
| Patt1976 | summary, general characteristics, enzymes, metabolites, utilisation | Methylobacterium organophilum | 1976 |
Patt, T.E., Cole, G.C., and Hanson, R.S. |
Methylobacterium, a New Genus of Facultatively Methylotrophic Bacteria. | International Journal of Systematic and Evolutionary Microbiology | 26(2), page(s): 226-229 | 10.1099/00207713-26-2-226 |
| Franco2012Bergey | summary, general characteristics, enzymes, utilisation | Microbispora rosea | 2012 |
Christopher Franco |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Streptosporangiaceae, Genus IV. Microbispora | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 1831 | 10.1007/978-0-387-68233-4 |
| Yoshimi1996 | summary, general characteristics, enzymes, utilisation | Nakamurella multipartita | 1996 |
Yoshimi, Y., Hiraishi, A., and Nakamura, K. |
Isolation and Characterization of gen. nov., sp. nov., a Polysaccharide-Accumulating Gram-Positive Bacterium from Activated Sludge | International Journal of Systematic and Evolutionary Microbiology | 46(2), page(s): 519-525 | 10.1099/00207713-46-2-519 |
| Han2006 | infections | Neisseria bacilliformis | 2006 |
Han XY, Hong T, Falsen E. |
Neisseria bacilliformis sp. nov. isolated from human infections. | Journal of Clinical Microbiology | 44(2), page(s): 474-479 | 10.1128/JCM.44.2.474-479.2006 |
| Yassin2001 | summary, general characteristics, enzymes, utilisation | Nocardia cyriacigeorgica | 2001 |
Yassin, A.F., Rainey, F.A., and Steiner, U. |
Nocardia cyriacigeorgici sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 51(4), page(s): 1419-1423 | 10.1099/00207713-51-4-1419 |
| Urakami1990b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Paracoccus aminophilus, Paracoccus aminovorans | 1990 |
Urakami T, Araki H, Oyanagi H, Suzuki K, Komagata K. |
Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N,N-dimethylformamide. | International Journal of Systematic Bacteriology | 40(3), page(s): 287-291 | 10.1099/00207713-40-3-287 |
| Rainey1999 | genetics, taxonomy | Paracoccus denitrificans | 1999 |
Rainey FA, Kelly DP, Stackebrandt E, Burghardt J, Hiraishi A, Katayama Y, Wood AP. |
A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. | International Journal of Systematic Bacteriology | 49(2), page(s): 645-651 | 10.1099/00207713-49-2-645 |
| Kelly2006 | genetics, taxonomy | Paracoccus denitrificans, Paracoccus pantotrophus | 2006 |
Kelly DP, Euzéby JP, Goodhew CF, Wood AP. |
Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections. | International Journal of Systematic and Evolutionary Microbiology | 56(10), page(s): 2495-2500 | 10.1099/ijs.0.64401-0 |
| Nokhal1983 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics, genetics, taxonomy | Paracoccus denitrificans | 1983 |
Nokhal, T.H., and Schlegel, H.G. |
Taxonomic Study of Paracoccus denitrificans | International Journal of Systematic Bacteriology | 33(1), page(s): 26-37 | 10.1099/00207713-33-1-26 |
| Harker1998 | summary, general characteristics, enzymes, utilisation | Paracoccus marcusii | 1998 |
Harker M, Hirschberg J, Oren A. |
Paracoccus marcusii sp. nov., an orange gram-negative coccus. | International Journal of Systematic Bacteriology | 48(2), page(s): 543-548 | 10.1099/00207713-48-2-543 |
| Christensen2005 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Pasteurella aerogenes, Pasteurella mairii, Actinobacillus rossii | 2005 |
Christensen H, Kuhnert P, Bisgaard M, Mutters R, Dziva F, Olsen JE. |
Emended description of porcine [Pasteurella] aerogenes, [Pasteurella] mairii and [Actinobacillus] rossii. | International Journal of Systematic and Evolutionary Microbiology | 55(1), page(s): 209-223 | 10.1099/ijs.0.63119-0 |
| McAllister1974 | summary, general characteristics | Pasteurella aerogenes | 1974 |
McAllister HA, Carter GR. |
An aerogenic Pasteurella-like organism recovered from swine. | American Journal of Veterinary Research | 35(7), page(s): 917-922 | PMID: 4601936 |
| Schink1984 | summary, general characteristics, enzymes, metabolites, utilisation | Pelobacter carbinolicus, Pelobacter propionicus | 1984 |
Schink, B. |
Fermentation of 2,3-butanediol by Pelobacter carbinolicus sp. nov. and Pelobacter propionicus sp. nov., and evidence for propionate formation from C2 compounds | Archives of Microbiology | 137, page(s): 33-41 | 10.1007/BF00425804 |
| Salinas2004a | summary, general characteristics, enzymes, metabolites, utilisation | Petrobacter succinatimandens | 2004 |
Salinas MB, Fardeau ML, Cayol JL, Casalot L, Patel BKC, Thomas P, Garcia JL, Ollivier B. |
Petrobacter succinatimandens gen. nov., sp. nov., a moderately thermophilic, nitrate-reducing bacterium isolated from an Australian oil well. | International Journal of Systematic and Evolutionary Microbiology | 54(3), page(s): 645-649 | 10.1099/ijs.0.02732-0 |
| Sakamoto2007b | health, plural fluid | Prevotella pleuritidis | 2007 |
Sakamoto M, Ohkusu K, Masaki T, Kako H, Ezaki T, Benno Y. |
Prevotella pleuritidis sp. nov., isolated from pleural fluid. | International Journal of Systematic and Evolutionary Microbiology | 57(8), page(s): 1725-1728 | 10.1099/ijs.0.64885-0\ |
| Ramette2011 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, substrate utilisation | Pseudomonas protegens | 2011 |
Ramette A, Frapolli M, Fischer-Le Saux M, Gruffaz C, Meyer JM, Défago G, Sutra L, Moënne-Loccoz Y. |
Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin. | Systematic and Applied Microbiology | 34(3), page(s): 180-188 | 10.1016/j.syapm.2010.10.005 |
| Mahendra2005 | summary, general characteristics, acid from carbohydrates, utilisation | Pseudonocardia dioxanivorans | 2005 |
Mahendra S, Alvarez-Cohen L. |
Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane. | International Journal of Systematic and Evolutionary Microbiology | 55(2), page(s): 593-598 | 10.1099/ijs.0.63085-0 |
| Young2007 | summary, general characteristics, enzymes, metabolites, utilisation | Pseudoxanthomonas spadix | 2007 |
Young CC, Ho MJ, Arun AB, Chen WM, Lai WA, Shen FT, Rekha PD, Yassin AF. |
Pseudoxanthomonas spadix sp. nov., isolated from oil-contaminated soil. | International Journal of Systematic and Evolutionary Microbiology | 57(8), page(s): 1823-1837 | 10.1099/ijs.0.65053-0 |
| Bernard2020 | cystic fibrosis, clinical sources | Pseudoxanthomonas winnipegensis, Pseudoxanthomonas spadix | 2020 |
Bernard, K.A., Vachon, A., Pacheco, A.L., Burdz, T., Wiebe, D., Beniac, D.R., Hiebert, S.L., Booth, T., Doyle, D.A., Lawson, P., and Bernier, A.-M. |
Pseudoxanthomonas winnipegensis sp. nov., derived from human clinical materials and recovered from cystic fibrosis and other patient types in Canada, and emendation of Pseudoxanthomonas spadix Young et al. 2007 | International Journal of Systematic and Evolutionary Microbiology | 70(12), page(s): 6313-6322 | 10.1099/ijsem.0.004533 |
| Weon2006 | summary, general characteristics, enzymes, metabolites, utilisation | Pseudoxanthomonas suwonensis | 2006 |
Weon HY, Kim BY, Kim JS, Lee SY, Cho YH, Go SJ, Hong SB, Im WT, Kwon SW. |
Pseudoxanthomonas suwonensis sp. nov., isolated from cotton waste composts. | International Journal of Systematic and Evolutionary Microbiology | 56(3), page(s): 659-662 | 10.1099/ijs.0.63749-0 |
| Chen2002 | summary, general characteristics, enzymes, metabolites, utilisation | Pseudoxanthomonas taiwanensis | 2002 |
Chen MY, Tsay SS, Chen KY, Shi YC, Lin YT, Lin GH. |
Pseudoxanthomonas taiwanensis sp. nov., a novel thermophilic, N2O-producing species isolated from hot springs. | International Journal of Systematic and Evolutionary Microbiology | 52(6), page(s): 2155-2161 | 10.1099/00207713-52-6-2155 |
| Takeuchi2002 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Rhodococcus jostii | 2002 |
Takeuchi M, Hatano K, Sedlácek I, Pácová Z. |
Rhodococcus jostii sp. nov., isolated from a medieval grave. | International Journal of Systematic and Evolutionary Microbiology | 52(2), page(s): 409-413 | 10.1099/00207713-52-2-409 |
| Klatte1994 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation | Rhodococcus opacus | 1994 |
Stefan Klatte, Reiner Michael Kroppenstedt, Frederick A. Rainey |
Rhodococcus opacus sp.nov., An Unusual Nutritionally Versatile Rhodococcus-species | Systematic and Applied Microbiology | 17(3), page(s): 355-360 | 1016/S0723-2020(11)80051-2 |
| Shiba1991 | summary, general characteristics, enzymes, metabolites, utilisation, antibiotics | Roseobacter litoralis, Roseobacter denitrificans | 1991 |
Tsuneo Shiba |
Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., Aerobic Pink-Pigmented Bacteria which Contain Bacteriochlorophyll a | Systematic and Applied Microbiology | 14(2), page(s): 140-145 | 10.1016/S0723-2020(11)80292-4 |
| Lee2013b | summary, general characteristics | Sphingobacterium cladoniae, Sphingobacterium siyangense | 2013 |
Lee DH, Hur JS, Kahng HY. |
Sphingobacterium cladoniae sp. nov., isolated from lichen, Cladonia sp., and emended description of Sphingobacterium siyangense. | International Journal of Systematic and Evolutionary Microbiology | 63(2), page(s): 755-760 | 10.1099/ijs.0.038844-0 |
| Liu2008b | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Sphingobacterium siyangense | 2008 |
Liu R, Liu H, Zhang CX, Yang SY, Liu XH, Zhang KY, Lai R. |
Sphingobacterium siyangense sp. nov., isolated from farm soil. | International Journal of Systematic and Evolutionary Microbiology | 58(6), page(s): 458-462 | 10.1099/ijs.0.65696-0 |
| Xie2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Sphingomonas azotifigens | 2006 |
Xie CH, Yokota A. |
Sphingomonas azotifigens sp. nov., a nitrogen-fixing bacterium isolated from the roots of Oryza sativa. | International Journal of Systematic and Evolutionary Microbiology | 56(4), page(s): 889-893 | 10.1099/ijs.0.64056-0 |
| Droge2006 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Spirochaeta coccoides | 2006 |
Dröge S, Fröhlich J, Radek R, König H. |
Spirochaeta coccoides sp. nov., a novel coccoid spirochete from the hindgut of the termite Neotermes castaneus. | Applied and Environmental Microbiology | 72(1), page(s): 392-397 | 10.1128/AEM.72.1.392-397.2006 |
| Kelly2000 | summary, general characteristics, enzymes, metabolites, utilisation | Starkeya novella | 2000 |
Kelly DP, McDonald IR, Wood AP. |
Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria. | International Journal of Systematic and Evolutionary Microbiology | 50(5), page(s): 1797-1802 | 10.1099/00207713-50-5-1797 |
| Xiang2007 | Streptomyces bingchenggensis | 2007 |
Xiang WS, Wang JD, Wang XJ, Zhang J. |
Two new beta-class milbemycins from streptomyces bingchenggensis: fermentation, isolation, structure elucidation and biological properties. | Journal of Antibiotics | 60(6), page(s): 351-356 | 10.1038/ja.2007.47 | |
| Rong2010 | genetics, taxonomy | Streptomyces albovinaceus, Streptomyces anulatus, Streptomyces atroolivaceus, Streptomyces bacillaris, Streptomyces cyaneofuscatus, Streptomyces fimicarius, Streptomyces flavovirens, Streptomyces griseus, Streptomyces halstedii, Streptomyces microflavus, Streptomyces californicus, Streptomyces flavogriseus | 2010 |
Rong X, Huang Y. |
Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species. | International Journal of Systematic and Evolutionary Microbiology | 60(3), page(s): 696-703 | 10.1099/ijs.0.012419-0 |
| Kampfer2012Bergey | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Streptomyces flavogriseus, Streptomyces hygroscopicus, Streptomyces lividans, Streptomyces specialis, Streptomyces violaceusniger | 2012 |
Peter Kampfer |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Streptomycetaceae, Genus I. Streptomyces | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 1455 | 10.1007/978-0-387-68233-4 |
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Kämpfer P, Huber B, Buczolits S, Thummes K, Grün-Wollny I, Busse HJ. |
Streptomyces specialis sp. nov. | International Journal of Systematic and Evolutionary Microbiology | 58(11), page(s): 2602-2606 | 10.1099/ijs.0.2008/001008-0 |
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Labeda, D.P., and Lyons, A.J. |
The Streptomyces violaceusniger Cluster Is Heterogeneous in DNA Relatedness among Strains: Emendation of the Descriptions of S. violaceusniger and Streptomyces hygroscopicus | 41(3), page(s): 398-401 | 10.1099/00207713-41-3-398 | |
| Quintana2012Bergey | summary, general characteristics, utilisation, antibiotics | Streptosporangium roseum | 2012 |
Erika Quintana and Michael Goodfellow |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Streptosporangiaceae, Genus I. Streptosporangium | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 1811 | 10.1007/978-0-387-68233-4 |
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Deng Y, Guo X, Wang Y, He M, Ma K, Wang H, Chen X, Kong D, Yang Z, Ruan Z. |
Terrisporobacter petrolearius sp. nov., isolated from an oilfield petroleum reservoir. | International Journal of Systematic and Evolutionary Microbiology | 65(10), page(s): 3522-3526 | 10.1099/ijsem.0.000450 |
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Matteuzzi, D., Hollaus, F., and Blavati, B. |
Proposal of neotype for Clostridium thermohydrosulfuricum and the merging of Clostridium tartarivorum with Clostridium thermosaccharolyticum. | International Journal of Systematic Bacteriology | 28(4), page(s): 528-531 | 10.1099/00207713-28-4-528 |
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A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. | International Journal of Systematic Bacteriology | 46(4), page(s): 933-938 | 10.1099/00207713-46-4-933 |
| Trujillo2012aBergey | summary, general characteristics, enzymes, metabolites, utilisation | Thermomonospora curvata | 2012 |
Martha E. Trujillo and Michael Goodfellow |
Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. Part A & B. Thermomonosporaceae, Genus I. Thermomonospora | Bergey's manual of systematic bacteriology. Vol. 5, The Actinobacteria. | 5, page(s): 1931 | 10.1007/978-0-387-68233-4 |
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Vésteinsdóttir H, Reynisdóttir DB, Örlygsson J. |
Thiomonas islandica sp. nov., a moderately thermophilic, hydrogen- and sulfur-oxidizing betaproteobacterium isolated from a hot spring. | International Journal of Systematic and Evolutionary Microbiology | 61(1), page(s): 132-137 | 10.1099/ijs.0.015511-0 |
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Chan EC, Siboo R, Keng T, Psarra N, Hurley R, Cheng SL, Iugovaz I. |
Treponema denticola (ex Brumpt 1925) sp. nov., nom. rev., and identification of new spirochete isolates from periodontal pockets. | International Journal of Systematic Bacteriology | 43(2), page(s): 196-203 | 10.1099/00207713-43-2-196 |
| Yumoto1999 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Vibrio rumoiensis | 1999 |
Yumoto I I, Iwata H, Sawabe T, Ueno K, Ichise N, Matsuyama H, Okuyama H, Kawasaki K. |
Characterization of a facultatively psychrophilic bacterium, vibrio rumoiensis sp. nov., that exhibits high catalase activity. | Applied and Environmental Microbiology | 65(1), page(s): 67-72 | 10.1128/AEM.65.1.67-72.1999 |
| Rivas2003 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation | Xylanimonas cellulosilytica | 2003 |
Rivas R, Sánchez M, Trujillo ME, Zurdo-Piñeiro JL, Mateos PF, Martínez-Molina E, Velázquez E. |
Xylanimonas cellulosilytica gen. nov., sp. nov., a xylanolytic bacterium isolated from a decayed tree (Ulmus nigra). | International Journal of Systematic and Evolutionary Microbiology | 53(1), page(s): 99-103 | 10.1099/ijs.0.02207-0 |
| Qin2007 | summary, general characteristics, enzymes, acid from carbohydrates, metabolites, utilisation, antibiotics | Zunongwangia profunda | 2007 |
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Wangia profunda gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment. | FEMS Microbiology Letters | 271(1), page(s): 53-58 | 10.1111/j.1574-6968.2007.00694.x |
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Maturana JL, Cárdenas JP. |
Insights on the Evolutionary Genomics of the Blautia Genus: Potential New Species and Genetic Content Among Lineages. | Frontiers in Microbiology | 12, page(s): 660920 | 10.3389/fmicb.2021.660920 |
| JaenLuchoro2022 | clinical sources | Corynebacterium genitalium, Corynebacterium pseudogenitalium | 2022 |
Jaén-Luchoro D, Al-Shaer S, Piñeiro-Iglesias B, Gonzales-Siles L, Cardew S, Jensie-Markopolous S, Ohlén M, Inganäs E, Neumann-Schaal M, Wolf J, Moore ERB. |
Corynebacterium genitalium sp. nov., nom. rev. and Corynebacterium pseudogenitalium sp. nov., nom. rev., two old species of the genus Corynebacterium described from clinical and environmental samples. | Research in Microbiology | 25, page(s): 103987 | 10.1016/j.resmic.2022.103987 |
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Rob U. Onyenwoke and Juergen Wiegel |
Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes. Family Thermoanaerobacterales Family III. Incertae Sedis, Genus II. Thermoanaerobacterium | Bergey's manual of systematic bacteriology. Vol. 3, The Firmicutes | 3, page(s): 1279 | 10.1007/b92997 |
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Phylogenetic relationships of butyrate-producing bacteria from the human gut. | Applied and Environmental Microbiology | 66(4), page(s): 1654-1661 | 10.1128/AEM.66.4.1654-1661.2000 | |
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Bacterial Gamma-Glutamyl Transpeptidase, an Emerging Biocatalyst: Insights Into Structure-Function Relationship and Its Biotechnological Applications. | Frontiers in Microbiology | 12, page(s): 641251 | 10.3389/fmicb.2021.641251 |
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Wu H, Rebello O, Crost EH, Owen CD, Walpole S, Bennati-Granier C, Ndeh D, Monaco S, Hicks T, Colvile A, Urbanowicz PA, Walsh MA, Angulo J, Spencer DIR, Juge N. |
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Bhatia S, Singh A, Batra N, Singh J. |
Microbial production and biotechnological applications of α-galactosidase. | International Journal of Biological Macromolecules | (150)page(s): 1294-1313 | 10.1016/j.ijbiomac.2019.10.140 | |
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Mannoside recognition and degradation by bacteria. | Biological Reviews, Wiley. | (hal01602393)page(s): 1-22 | 10.1111/brv.12316 | |
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Thomas Edison E. dela Cruz and Jeremy Martin O. Torres |
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DNA as a nutrient: novel role for bacterial competence gene homologs. | Journal of Bacteriology | 183(21), page(s): 6288-6293 | 10.1128/JB.183.21.6288-6293.2001 | |
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John T. Buchanan, Amelia J. Simpson, Ramy K. Aziz, George Y. Liu, Sascha A. Kristian, Malak Kotb, James Feramisco, Victor Nizet |
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| AlbrachtSchulte2021 | red meat, diet, N-glycolylneuraminic acid | 2021 |
Kembra Albracht-Schulte, Tariful Islam, Paige Johnson, Naima Moustaid-Moussa |
Systematic Review of Beef Protein Effects on Gut Microbiota: Implications for Health. | Advances in Nutrition | 12(1), page(s): 102-114 | 10.1093/advances/nmaa085 | |
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Rathore AS, Gupta RD |
Chitinases from Bacteria to Human: Properties, Applications, and Future Perspectives. | Enzyme Research | (791907) | 10.1155/2015/791907 | |
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Wei B, Wang S, Wang Y, Ke S, Jin W, Chen J, Zhang H, Sun J, Henning SM, Wang J, Wang H. |
Gut microbiota-mediated xanthine metabolism is associated with resistance to high-fat diet-induced obesity. | Journal of Nutritional Biochemistry | 88, page(s): 108533 | 10.1016/j.jnutbio.2020.108533 | |
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Whiting GC, Coggins RA. |
The role of quinate and shikimate in the metabolism of lactobacilli. | Antonie Van Leeuwenhoek | 37(1), page(s): 33-49 | 10.1007/BF02218465 |
| Maier2021 | antibiotics | 2021 |
Maier L, Goemans CV, Wirbel J, Kuhn M, Eberl C, Pruteanu M, Müller P, Garcia-Santamarina S, Cacace E, Zhang B, Gekeler C, Banerjee T, Anderson EE, Milanese A, Löber U, Forslund SK, Patil KR, Zimmermann M, Stecher B, Zeller G, Bork P, Typas A. |
Unravelling the collateral damage of antibiotics on gut bacteria. | Nature | 599(7883), page(s): 120-124 | 10.1038/s41586-021-03986-2 | |
| Zimmermann2019 | health, eczema, asthma, allergy | 2019 |
Zimmermann P, Messina N, Mohn WW, Finlay BB, Curtis N. |
Association between the intestinal microbiota and allergic sensitization, eczema, and asthma: A systematic review. | Journal of Allergy and Clinical Immunology | 143(2), page(s): 467-485 | 10.1016/j.jaci.2018.09.025. | |
| Zimmermann2019a | antibiotics, ecology, dysbiosis | Faecalibacterium prausnitzii | 2019 |
Zimmermann P, Curtis N. |
The effect of antibiotics on the composition of the intestinal microbiota - a systematic review. | Journal of Infection | 79(6), page(s): 471-489 | 10.1016/j.jinf.2019.10.008 |
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Antianaerobe activity of RBX 7644 (ranbezolid), a new oxazolidinone, compared with those of eight other agents. | Antimicrobial Agents and Chemotherapy | 47(3), page(s): 1143-1147 | 10.1128/AAC.47.3.1143-1147.2003 | |
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Comparative antianaerobic activity of BMS 284756. | Antimicrobial Agents and Chemotherapy | 45(2), page(s): 589-592 | 10.1128/AAC.45.2.589-592.2001 | |
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In vitro activity of levofloxacin against a selected group of anaerobic bacteria isolated from skin and soft tissue infections. | Antimicrobial Agents and Chemotherapy | 42(4), page(s): 984-986 | 10.1128/AAC.42.4.984 | |
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Comparative in vitro activity of new beta-lactam antibiotics against anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 20(5), page(s): 600-609 | 10.1128/AAC.20.5.600 | |
| Murray1990 | antibiotics | 1990 |
Murray PR, Niles AC. |
In vitro activity of meropenem (SM-7338), imipenem, and five other antibiotics against anaerobic clinical isolates. | Diagnostic Microbiology and Infectious Diseases | 13(1), page(s): 57-61 | 10.1016/0732-8893(90)90055-z | |
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Comparison of the fluoroquinolones based on pharmacokinetic and pharmacodynamic parameters. | Pharmacotherapy | 20(4), page(s): 417-428 | 10.1592/phco.20.5.417.35062 | |
| Goldstein2004 | antibiotics | 2004 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
In vitro activities of the new semisynthetic glycopeptide telavancin (TD-6424), vancomycin, daptomycin, linezolid, and four comparator agents against anaerobic gram-positive species and Corynebacterium spp. | Antimicrobial Agents and Chemotherapy | 48(6), page(s): 2149-2152 | 10.1128/AAC.48.6.2149-2152.2004 | |
| Olano2001 | antibiotics | Weissella confusa | 2001 |
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Weissella confusa (basonym: Lactobacillus confusus) bacteremia: a case report. | Journal of Clinical Microbiology | 39(4), page(s): 1604-1607 | 10.1128/JCM.39.4.1604-1607.2001 |
| Svec2007 | antibiotics | Weissella confusa | 2007 |
Svec P, Sevcíková A, Sedlácek I, Bednárová J, Snauwaert C, Lefebvre K, Vandamme P, Vancanneyt M. |
Identification of lactic acid bacteria isolated from human blood cultures. | FEMS Immunology and Medical Microbiology | 49(2), page(s): 192-196 | 10.1111/j.1574-695X.2006.00199.x |
| Johnson1986a | antibiotics | Campylobacter gracilis, Campylobacter ureolyticus | 1986 |
Johnson CC, Reinhardt JF, Mulligan ME, George WL, Finegold SM. |
In vitro activities of 17 antimicrobial agents against the formate/fumarate-requiring, anaerobic gram-negative bacilli. | Diagnostic Microbiology and Infectious Diseases | 5(3), page(s): 269-272 | 10.1016/0732-8893(86)90011-8 |
| Goldstein2018 | antibiotics | Bacteroides pyogenes, Eikenella corrodens, Fusobacterium canifelinum, Fusobacterium nucleatum, Pasteurella multocida, Porphyromonas cangingivalis, Porphyromonas canoris, Porphyromonas gingivalis, Prevotella bivia, Prevotella denticola, Prevotella enoeca, Prevotella intermedia, Prevotella loescheii, Prevotella melaninogenica, Prevotella nigrescens, Staphylococcus pseudintermedius | 2018 |
Goldstein EJC, Citron DM, Tyrrell KL, Leoncio E, Merriam CV. |
Comparative In Vitro Activity of Omadacycline against Dog and Cat Bite Wound Isolates. | Antimicrobial Agents and Chemotherapy | 62(4), page(s): e02551-17 | 10.1128/AAC.02551-17 |
| Goldstein2018a | antibiotics | Bacteroides caccae, Bacteroides fragilis, Bacteroides intestinalis, Bacteroides nordii, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides xylanisolvens, Bilophila wadsworthia, Clostridioides difficile, Clostridium butyricum, Clostridium cadaveris, Clostridium innocuum, Clostridium perfringens, Clostridium scindens, Clostridium symbiosum, Desulfovibrio desulfuricans, Desulfovibrio fairfieldensis, Eggerthella lenta, Enterocloster aldenensis, Enterocloster bolteae, Enterocloster citroniae, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Finegoldia magna, Flavonifractor plautii, Fusobacterium mortiferum, Fusobacterium necrophorum, Fusobacterium nucleatum, Fusobacterium varium, Hungatella hathewayi, Mogibacterium timidum, Paeniclostridium sordellii, Parabacteroides distasonis, Parabacteroides goldsteinii, Parabacteroides massiliensis, Parabacteroides merdae, Parvimonas micra, Peptoniphilus harei, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Porphyromonas gingivalis, Porphyromonas somerae, Porphyromonas uenonis, Prevotella baroniae, Prevotella bergensis, Prevotella bivia, Prevotella buccae, Prevotella melaninogenica, Prevotella nanceiensis, Schaalia turicensis, Slackia exigua, Solobacterium moorei, Veillonella atypica, Veillonella dispar, Veillonella parvula | 2018 |
Goldstein EJC, Citron DM, Tyrrell KL, Leoncio E, Merriam CV. |
Comparative In Vitro Activities of Relebactam, Imipenem, the Combination of the Two, and Six Comparator Antimicrobial Agents against 432 Strains of Anaerobic Organisms, Including Imipenem-Resistant Strains. | Antimicrobial Agents and Chemotherapy | 62(2), page(s): e01992-17 | 10.1128/AAC.01992-17 |
| Goldstein2017 | antibiotics | Bacteroides pyogenes, Eikenella corrodens, Fusobacterium canifelinum, Fusobacterium russii, Pasteurella dagmatis, Pasteurella multocida | 2017 |
Goldstein EJC, Citron DM, Tyrrell KL, Leoncio ES. |
In Vitro Activity of Pexiganan and 10 Comparator Antimicrobials against 234 Isolates, Including 93 Pasteurella Species and 50 Anaerobic Bacterial Isolates Recovered from Animal Bite Wounds. | Antimicrobial Agents and Chemotherapy | 61(6), page(s): e00246-17 | 10.1128/AAC.00246-17 |
| Shilnikova2015 | antibiotics | 2015 |
Shilnikova II, Dmitrieva NV. |
Evaluation of Antibiotic Susceptibility of Gram-Positive Anaerobic Cocci Isolated from Cancer Patients of the N. N. Blokhin Russian Cancer Research Center. | Journal of Pathogens | 2015(ID 648134), page(s): 1-5 | 10.1155/2015/648134 | |
| Goldstein2014 | antibiotics | Anaerocolumna aminovalerica, Anaerotignum lactatifermentans, Clostridium baratii, Clostridium butyricum, Clostridium cadaveris, Clostridium colicanis, Clostridium disporicum, Clostridium fallax, Clostridium hylemonae, Clostridium innocuum, Clostridium novyi A, Clostridium paraputrificum, Clostridium perfringens, Clostridium sardiniense, Clostridium scindens, Clostridium sporogenes, Clostridium subterminale, Clostridium symbiosum, Clostridium tertium, Enterocloster aldenensis, Enterocloster bolteae, Enterocloster citroniae, Enterocloster clostridioformis, Enterocloster lavalensis, Erysipelatoclostridium ramosum, Flavonifractor plautii, Hungatella hathewayi, Intestinibacter bartlettii, Lacrimispora celerecrescens, Paeniclostridium sordellii, Paraclostridium bifermentans, Terrisporobacter glycolicus | 2014 |
Goldstein EJ, Citron DM, Tyrrell KL. |
Comparative in vitro activities of SMT19969, a new antimicrobial agent, against 162 strains from 35 less frequently recovered intestinal Clostridium species: implications for Clostridium difficile recurrence. | Antimicrobial Agents and Chemotherapy | 58(2), page(s): 1187-1191 | 10.1128/AAC.02184-13 |
| Goldstein2013 | antibiotics | Anaerococcus vaginalis, Anaerocolumna aminovalerica, Bacteroides heparinolyticus, Bifidobacterium adolescentis, Bifidobacterium angulatum, Bifidobacterium animalis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Bifidobacterium pseudocatenulatum, Bifidobacterium ruminantium, Clostridium paraputrificum, Clostridium tertium, Collinsella aerofaciens, Eggerthia catenaformis, Faecalitalea cylindroides, Fusobacterium nucleatum subsp. nucleatum, Lacrimispora celerecrescens, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Lactobacillus crispatus, Lactobacillus gasseri, Lactobacillus johnsonii, Lancefieldella parvula, Lancefieldella rimae, Limosilactobacillus oris, Limosilactobacillus vaginalis, Loigolactobacillus bifermentans, Mogibacterium neglectum, Olsenella uli, Peptoniphilus asaccharolyticus, Porphyromonas endodontalis, Porphyromonas levii, Prevotella denticola, Prevotella intermedia, Prevotella loescheii, Prevotella oralis, Prevotella oris, Prevotella timonensis, Pseudoramibacter alactolyticus | 2013 |
Goldstein EJ, Citron DM, Tyrrell KL, Merriam CV. |
In vitro activity of Biapenem plus RPX7009, a carbapenem combined with a serine β-lactamase inhibitor, against anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 57(6), page(s): 2620-2630 | 10.1128/AAC.02418-12 |
| Goldstein2013a | antibiotics | Alloprevotella rava, Bacteroides fragilis, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bifidobacterium adolescentis, Bifidobacterium angulatum, Bifidobacterium animalis subsp. lactis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Bifidobacterium pseudocatenulatum, Clostridioides difficile, Cutibacterium acnes, Eggerthella lenta, Enterococcus faecalis, Enterococcus faecium, Eubacterium limosum, Finegoldia magna, Fusobacterium mortiferum, Fusobacterium necrophorum, Fusobacterium nucleatum, Fusobacterium varium, Lacticaseibacillus casei, Lacticaseibacillus paracasei, Lacticaseibacillus rhamnosus, Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus gasseri, Lactobacillus johnsonii, Limosilactobacillus fermentum, Limosilactobacillus oris, Limosilactobacillus vaginalis, Mogibacterium timidum, Parabacteroides distasonis, Parabacteroides merdae, Parvimonas micra, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Porphyromonas gingivalis, Porphyromonas somerae, Prevotella bivia, Prevotella buccae, Prevotella intermedia, Prevotella melaninogenica, Prevotella nigrescens, Pseudoramibacter alactolyticus, Slackia exigua, Staphylococcus aureus subsp. aureus, Streptococcus agalactiae, Streptococcus anginosus, Streptococcus constellatus subsp. constellatus, Streptococcus intermedius, Streptococcus pneumoniae, Streptococcus pyogenes, Veillonella atypica, Veillonella dispar, Veillonella parvula | 2013 |
Goldstein EJ, Citron DM, Tyrrell KL, Merriam CV. |
Comparative in vitro activities of SMT19969, a new antimicrobial agent, against Clostridium difficile and 350 gram-positive and gram-negative aerobic and anaerobic intestinal flora isolates. | Antimicrobial Agents and Chemotherapy | 57(10), page(s): 4872-4876 | 10.1128/AAC.01136-13 |
| Goldstein2013b | antibiotics | Bacteroides caccae, Bacteroides cellulosilyticus, Bacteroides fragilis, Bacteroides nordii, Bacteroides ovatus, Bacteroides salyersiae, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides xylanisolvens, Bilophila wadsworthia, Clostridioides difficile, Clostridium butyricum, Clostridium innocuum, Clostridium paraputrificum, Clostridium perfringens, Clostridium scindens, Clostridium symbiosum, Collinsella aerofaciens, Eggerthella lenta, Enterocloster bolteae, Enterocloster citroniae, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Finegoldia magna, Fusobacterium mortiferum, Fusobacterium necrophorum, Fusobacterium nucleatum, Fusobacterium varium, Hungatella hathewayi, Paeniclostridium sordellii, Parabacteroides distasonis, Parabacteroides goldsteinii, Parabacteroides merdae, Parvimonas micra, Peptoniphilus harei, Peptostreptococcus anaerobius, Phocaeicola dorei, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Porphyromonas gingivalis, Porphyromonas somerae, Porphyromonas uenonis, Prevotella bivia, Prevotella buccae, Prevotella melaninogenica, Prevotella oralis, Pseudoramibacter alactolyticus, Slackia exigua, Solobacterium moorei, Varibaculum cambriense, Veillonella atypica, Veillonella dispar, Veillonella parvula | 2013 |
Goldstein EJ, Citron DM, Tyrrell KL, Merriam CV. |
Comparative in vitro activities of GSK2251052, a novel boron-containing leucyl-tRNA synthetase inhibitor, against 916 anaerobic organisms. | Antimicrobial Agents and Chemotherapy | 57(5), page(s): 2401-2404 | 10.1128/AAC.02580-12 |
| Tyrrell2012 | antibiotics | Actinomyces gerencseriae, Actinomyces graevenitzii, Actinomyces israelii, Actinomyces naeslundii, Anaerococcus lactolyticus, Anaerococcus octavius, Anaerococcus prevotii, Anaerococcus tetradius, Anaerococcus vaginalis, Bacteroides caccae, Bacteroides fragilis, Bacteroides nordii, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bilophila wadsworthia, Campylobacter ureolyticus, Clostridioides difficile, Clostridium innocuum, Clostridium perfringens, Collinsella aerofaciens, Corynebacterium accolens, Corynebacterium amycolatum, Corynebacterium aurimucosum, Corynebacterium jeikeium, Corynebacterium minutissimum, Corynebacterium pseudogenitalium, Corynebacterium sanguinis, Corynebacterium simulans, Corynebacterium striatum, Corynebacterium tuberculostearicum, Corynebacterium urealyticum, Corynebacterium xerosis, Cutibacterium acnes, Cutibacterium avidum, Cutibacterium granulosum, Desulfovibrio desulfuricans, Desulfovibrio fairfieldensis, Eggerthella lenta, Eggerthia catenaformis, Enterocloster aldenensis, Enterocloster bolteae, Enterocloster citroniae, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Faecalitalea cylindroides, Finegoldia magna, Fusobacterium necrophorum, Fusobacterium nucleatum, Gleimia europaea, Hungatella hathewayi, Lacticaseibacillus casei, Lacticaseibacillus paragasseri, Lacticaseibacillus rhamnosus, Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus iners, Lactobacillus jensenii, Lancefieldella parvula, Lancefieldella rimae, Limosilactobacillus fermentum, Mogibacterium timidum, Parabacteroides distasonis, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptoniphilus harei, Peptoniphilus indolicus, Peptoniphilus ivorii, Peptoniphilus lacrimalis, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Porphyromonas gingivalis, Porphyromonas levii, Porphyromonas somerae, Prevotella bivia, Prevotella disiens, Prevotella intermedia, Prevotella loescheii, Prevotella melaninogenica, Prevotella nigrescens, Pseudoramibacter alactolyticus, Ruminococcus gnavus, Schaalia meyeri, Schaalia odontolytica, Schaalia turicensis, Slackia exigua, Solobacterium moorei, Sutterella wadsworthensis, Veillonella atypica, Veillonella dispar, Veillonella parvula, Winkia neuii | 2012 |
Tyrrell KL, Citron DM, Warren YA, Goldstein EJ. |
In vitro activity of TD-1792, a multivalent glycopeptide-cephalosporin antibiotic, against 377 strains of anaerobic bacteria and 34 strains of Corynebacterium species. | Antimicrobial Agents and Chemotherapy | 56(4), page(s): 2194-2197 | 10.1128/AAC.06274-11 |
| Citron2012 | antibiotics | Acidaminococcus fermentans, Actinomyces viscosus, Alloscardovia omnicolens, Clostridium cochlearium, Clostridium leptum, Clostridium sartagoforme, Enterobacter cloacae, Escherichia coli, Faecalicatena contorta, Fusobacterium gonidiaformans, Fusobacterium russii, Holdemanella biformis, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Lacrimispora indolis, Lacrimispora sphenoides, Lactobacillus leichmannii, Levilactobacillus brevis, Tissierella praeacuta, Tyzzerella nexilis | 2012 |
Citron DM, Tyrrell KL, Merriam CV, Goldstein EJ. |
In vitro activities of CB-183,315, vancomycin, and metronidazole against 556 strains of Clostridium difficile, 445 other intestinal anaerobes, and 56 Enterobacteriaceae species. | Antimicrobial Agents and Chemotherapy | 56(3), page(s): 1613-1615 | 10.1128/AAC.05655-11 |
| Citron2012a | antibiotics | Prevotella denticola, Streptococcus pyogenes, Fusobacterium mortiferum, Fusobacterium varium, Streptococcus constellatus subsp. constellatus, Olsenella uli, Enterococcus faecalis, Peptostreptococcus stomatis, Lactobacillus gasseri, Porphyromonas uenonis, Enterococcus faecium, Bifidobacterium adolescentis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Aerococcus viridans, Bifidobacterium pseudocatenulatum, Ligilactobacillus salivarius, Limosilactobacillus antri, Limosilactobacillus reuteri, Streptococcus anginosus, Weissella cibaria, Fusobacterium nucleatum, Prevotella melaninogenica, Prevotella bivia, Parvimonas micra, Peptostreptococcus anaerobius, Finegoldia magna, Clostridium perfringens, Clostridium innocuum, Bacteroides fragilis, Eggerthella lenta, Veillonella atypica, Veillonella dispar, Veillonella parvula, Clostridioides difficile, Erysipelatoclostridium ramosum, Porphyromonas asaccharolytica, Phocaeicola vulgatus, Bacteroides ovatus, Bacteroides thetaiotaomicron, Parabacteroides distasonis, Collinsella aerofaciens, Eubacterium limosum, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Pseudoramibacter alactolyticus, Eggerthia catenaformis, Slackia exigua, Solobacterium moorei, Faecalitalea cylindroides, Lactobacillus crispatus, Staphylococcus aureus subsp. aureus, Streptococcus intermedius | 2012 |
Citron DM, Tyrrell KL, Merriam CV, Goldstein EJ. |
Comparative in vitro activities of LFF571 against Clostridium difficile and 630 other intestinal strains of aerobic and anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 56(5), page(s): 2493-2503 | 10.1128/AAC.06305-11 |
| Goldstein2012 | antibiotics | Pasteurella dagmatis, Pasteurella multocida, Staphylococcus aureus subsp. aureus, Staphylococcus cohnii subsp. cohnii, Staphylococcus epidermidis, Staphylococcus pseudintermedius, Staphylococcus warneri, Streptococcus intermedius, Streptococcus mitis, Streptococcus sanguinis | 2012 |
Goldstein EJ, Citron DM, Merriam CV, Tyrrell KL. |
Ceftaroline versus isolates from animal bite wounds: comparative in vitro activities against 243 isolates, including 156 Pasteurella species isolates. | Antimicrobial Agents and Chemotherapy | 56(12), page(s): 6319-6323 | 10.1128/AAC.01794-12 |
| Citron2011 | antibiotics | Prevotella buccae, Porphyromonas levii, Prevotella oris, Prevotella disiens, Prevotella corporis, Porphyromonas somerae, Prevotella intermedia, Prevotella loescheii, Prevotella denticola, Prevotella corporis | 2011 |
Citron DM, Tyrrell KL, Merriam V, Goldstein EJ. |
In vitro activity of ceftazidime-NXL104 against 396 strains of beta-lactamase-producing anaerobes. | Antimicrobial Agents and Chemotherapy | 55(7), page(s): 3616-3620 | 10.1128/AAC.01682-10 |
| Snydman2008 | antibiotics | Bacteroides eggerthii, Bacteroides nordii, Bacteroides ovatus, Clostridioides difficile, Clostridium paraputrificum, Clostridium tertium, Cutibacterium avidum, Cutibacterium granulosum, Anaerococcus prevotii, Clostridium subterminale, Cutibacterium acnes, Peptoniphilus asaccharolyticus | 2008 |
Snydman DR, Jacobus NV, McDermott LA. |
In vitro activities of doripenem, a new broad-spectrum carbapenem, against recently collected clinical anaerobic isolates, with emphasis on the Bacteroides fragilis group. | Antimicrobial Agents and Chemotherapy | 52(12), page(s): 4492-4496 | 10.1128/AAC.00696-08 |
| Goldstein2008 | antibiotics | Anaerococcus prevotii, Anaerococcus tetradius, Anaerococcus vaginalis, Anaerocolumna aminovalerica, Bacteroides caccae, Bacteroides fragilis, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Clostridium cadaveris, Clostridium innocuum, Clostridium malenominatum, Clostridium perfringens, Clostridium subterminale, Corynebacterium accolens, Corynebacterium amycolatum, Corynebacterium aurimucosum, Corynebacterium jeikeium, Corynebacterium minutissimum, Corynebacterium simulans, Corynebacterium striatum, Corynebacterium urealyticum, Corynebacterium xerosis, Cutibacterium acnes, Enterobacter cloacae, Enterocloster clostridioformis, Escherichia coli, Finegoldia magna, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Lacrimispora sphenoides, Parabacteroides distasonis, Parabacteroides merdae, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Porphyromonas somerae, Prevotella bivia, Proteus mirabilis, Proteus vulgaris, Providencia rettgeri, Pseudomonas aeruginosa, Staphylococcus epidermidis, Staphylococcus haemolyticus, Staphylococcus lugdunensis, Streptococcus agalactiae, Streptococcus dysgalactiae subsp. equisimilis, Streptococcus pyogenes | 2008 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
In vitro activities of doripenem and six comparator drugs against 423 aerobic and anaerobic bacterial isolates from infected diabetic foot wounds. | Antimicrobial Agents and Chemotherapy | 52(2), page(s): 761-766 | 10.1128/AAC.01128-07 |
| Citron2007 | antibiotics | 2007 |
Citron DM, Goldstein EJ, Merriam CV, Lipsky BA, Abramson MA. |
Bacteriology of moderate-to-severe diabetic foot infections and in vitro activity of antimicrobial agents. | Antimicrobial Agents and Chemotherapy | 45(9), page(s): 2819-2828 | 10.1128/JCM.00551-07 | |
| Goldstein2006 | antibiotics | Acidaminococcus fermentans, Actinomyces israelii, Alloprevotella tannerae, Clostridium cochlearium, Clostridium hylemonae, Clostridium sartagoforme, Desulfovibrio desulfuricans, Desulfovibrio fairfieldensis, Desulfovibrio piger, Desulfovibrio vulgaris, Dialister pneumosintes, Fusobacterium gonidiaformans, Fusobacterium necrogenes, Lacrimispora indolis, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus leichmannii, Levilactobacillus brevis, Limosilactobacillus fermentum, Porphyromonas endodontalis, Porphyromonas levii, Prevotella intermedia, Prevotella oris, Schaalia meyeri, Schaalia odontolytica, Schaalia turicensis, Sutterella wadsworthensis, Terrisporobacter glycolicus, Tissierella praeacuta, Clostridioides difficile, Clostridium butyricum, Clostridium paraputrificum, Clostridium symbiosum, Clostridium tertium, Collinsella aerofaciens, Eggerthella lenta, Eggerthia catenaformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Fusobacterium mortiferum, Fusobacterium necrophorum, Fusobacterium nucleatum, Fusobacterium varium, Hungatella hathewayi, Lacticaseibacillus rhamnosus, Ligilactobacillus salivarius, Paeniclostridium sordellii, Porphyromonas gingivalis, Prevotella buccae, Prevotella denticola, Prevotella oralis, Pseudoramibacter alactolyticus, Veillonella atypica, Veillonella dispar, Veillonella parvula, Lacrimispora sphenoides | 2006 |
Goldstein EJ, Citron DM, Warren YA, Tyrrell KL, Merriam CV, Fernandez H. |
In vitro activity of moxifloxacin against 923 anaerobes isolated from human intra-abdominal infections. | Antimicrobial Agents and Chemotherapy | 50(1), page(s): 148-155 | 10.1128/AAC.50.1.148-155.2006 |
| Goldstein2006a | antibiotics | Anaerococcus prevotii, Anaerococcus tetradius, Anaerococcus vaginalis, Anaerocolumna aminovalerica, Bacteroides caccae, Bacteroides fragilis, Bacteroides ovatus, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Clostridium cadaveris, Clostridium innocuum, Clostridium malenominatum, Clostridium perfringens, Clostridium subterminale, Corynebacterium amycolatum, Corynebacterium aurimucosum, Corynebacterium jeikeium, Corynebacterium striatum, Corynebacterium tuberculostearicum, Corynebacterium urealyticum, Corynebacterium xerosis, Cutibacterium acnes, Enterobacter cloacae, Enterocloster clostridioformis, Escherichia coli, Finegoldia magna, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Lacrimispora sphenoides, Parabacteroides distasonis, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptoniphilus harei, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Porphyromonas somerae, Prevotella bivia, Prevotella melaninogenica, Proteus mirabilis, Proteus vulgaris, Providencia rettgeri, Pseudomonas aeruginosa, Staphylococcus aureus subsp. aureus, Staphylococcus epidermidis, Staphylococcus haemolyticus, Staphylococcus lugdunensis, Streptococcus agalactiae, Streptococcus dysgalactiae subsp. equisimilis, Streptococcus pyogenes | 2006 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
In vitro activity of ceftobiprole against aerobic and anaerobic strains isolated from diabetic foot infections. | Antimicrobial Agents and Chemotherapy | 50(11), page(s): 3959-3962 | 10.1128/AAC.00722-06 |
| Tyrrell2006 | antibiotics | 2006 |
Tyrrell KL, Citron DM, Warren YA, Fernandez HT, Merriam CV, Goldstein EJ. |
In vitro activities of daptomycin, vancomycin, and penicillin against Clostridium difficile, C. perfringens, Finegoldia magna, and Propionibacterium acnes. | Antimicrobial Agents and Chemotherapy | 50(8), page(s): 2728-2731 | 10.1128/AAC.00357-06 | |
| Goldstein2006b | antibiotics | Anaerococcus prevotii, Parvimonas micra, Peptostreptococcus anaerobius, Finegoldia magna, Peptoniphilus asaccharolyticus, Clostridium subterminale, Clostridium perfringens, Enterocloster clostridioformis, Clostridium innocuum, Streptococcus pyogenes, Anaerococcus tetradius, Corynebacterium jeikeium, Staphylococcus capitis subsp. capitis, Staphylococcus hominis subsp. hominis, Staphylococcus epidermidis, Staphylococcus warneri, Staphylococcus cohnii subsp. cohnii, Staphylococcus haemolyticus, Lacrimispora sphenoides, Corynebacterium amycolatum, Corynebacterium striatum, Corynebacterium urealyticum, Staphylococcus lugdunensis, Streptococcus agalactiae, Streptococcus dysgalactiae subsp. equisimilis, Clostridium cadaveris, Peptoniphilus harei, Staphylococcus simulans, Corynebacterium simulans, Corynebacterium glucuronolyticum, Mammaliicoccus sciuri, Staphylococcus caprae, Staphylococcus schleiferi subsp. schleiferi, Streptococcus alactolyticus, Streptococcus canis | 2006 |
Goldstein EJ, Citron DM, Warren YA, Tyrrell KL, Merriam CV, Fernandez HT. |
In vitro activities of dalbavancin and 12 other agents against 329 aerobic and anaerobic gram-positive isolates recovered from diabetic foot infections. | Antimicrobial Agents and Chemotherapy | 50(8), page(s): 2875-2879 | 10.1128/AAC.00286-06 |
| Goldstein2006c | antibiotics | Actinomyces israelii, Actinomyces naeslundii, Actinomyces viscosus, Alistipes putredinis, Anaerobiospirillum succiniciproducens, Anaerobiospirillum thomasii, Anaerococcus prevotii, Bacteroides heparinolyticus, Campylobacter gracilis, Campylobacter ureolyticus, Clostridioides difficile, Clostridium butyricum, Clostridium cadaveris, Clostridium innocuum, Clostridium tertium, Eggerthia catenaformis, Enterocloster bolteae, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Finegoldia magna, Fusobacterium mortiferum, Fusobacterium naviforme, Fusobacterium varium, Hungatella hathewayi, Lacticaseibacillus casei, Lactobacillus acidophilus, Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus delbrueckii subsp. lactis, Lactobacillus gasseri, Lactobacillus jensenii, Levilactobacillus brevis, Paraclostridium bifermentans, Parvimonas micra, Peptoniphilus asaccharolyticus, Porphyromonas canoris, Porphyromonas gingivalis, Porphyromonas macacae, Porphyromonas somerae, Prevotella buccae, Prevotella disiens, Prevotella melaninogenica, Prevotella oralis, Prevotella oris, Schaalia meyeri, Schaalia odontolytica, Veillonella atypica, Veillonella dispar, Veillonella parvula, Winkia neuii, Bacteroides pyogenes, Fusobacterium russii | 2006 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
Comparative in vitro susceptibilities of 396 unusual anaerobic strains to tigecycline and eight other antimicrobial agents. | Antimicrobial Agents and Chemotherapy | 50(10), page(s): 3507-3513 | 10.1128/AAC.00499-06 |
| Goldstein2006d | antibiotics | Cutibacterium acnes, Cutibacterium avidum, Cutibacterium granulosum | 2006 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
Comparative in vitro activities of retapamulin (SB-275833) against 141 clinical isolates of Propionibacterium spp., including 117 P. acnes isolates. | Antimicrobial Agents and Chemotherapy | 50(1), page(s): 379-381 | 10.1128/AAC.50.1.379-381.2006 |
| Goldstein2005 | antibiotics | Actinomyces israelii, Actinomyces viscosus, Anaerococcus prevotii, Clostridioides difficile, Clostridium innocuum, Clostridium moniliforme, Clostridium perfringens, Cutibacterium acnes, Cutibacterium avidum, Cutibacterium granulosum, Eggerthella lenta, Eggerthia catenaformis, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Eubacterium tenue, Faecalicatena contorta, Finegoldia magna, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus gasseri, Lactobacillus jensenii, Lactobacillus leichmannii, Olsenella uli, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptostreptococcus anaerobius, Pseudoramibacter alactolyticus, Schaalia meyeri, Schaalia odontolytica, Schaalia turicensis | 2005 |
Goldstein, E. J., Citron, D. M., Merriam, C. V., Warren, Y. A., Tyrrell, K. L., Fernandez, H. T., & Bryskier, A. |
Comparative in vitro activities of XRP 2868, pristinamycin, quinupristin-dalfopristin, vancomycin, daptomycin, linezolid, clarithromycin, telithromycin, clindamycin, and ampicillin against anaerobic gram-positive species, actinomycetes, and lactobacilli. | Antimicrobial Agents and Chemotherapy | 49(1), page(s): 408-413 | 10.1128/AAC.49.1.408-413.2005 |
| Citron2003 | antibiotics | Actinomyces israelii, Actinomyces naeslundii, Actinomyces viscosus, Anaerococcus prevotii, Anaerocolumna aminovalerica, Bacteroides caccae, Bacteroides fragilis, Bacteroides ovatus, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bifidobacterium adolescentis, Bifidobacterium bifidum, Bifidobacterium breve, Bifidobacterium catenulatum, Bifidobacterium dentium, Bifidobacterium longum subsp. longum, Clostridioides difficile, Clostridium baratii, Clostridium butyricum, Clostridium cadaveris, Clostridium cochlearium, Clostridium combesii, Clostridium innocuum, Clostridium leptum, Clostridium novyi A, Clostridium paraputrificum, Clostridium perfringens, Clostridium sporogenes, Clostridium subterminale, Clostridium symbiosum, Clostridium tertium, Collinsella aerofaciens, Cutibacterium acnes, Cutibacterium avidum, Cutibacterium granulosum, Eggerthella lenta, Eggerthia catenaformis, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium brachy, Eubacterium limosum, Faecalicatena contorta, Finegoldia magna, Fusobacterium mortiferum, Fusobacterium varium, Gemella morbillorum, Lacrimispora sphenoides, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus delbrueckii subsp. delbrueckii, Lactobacillus delbrueckii subsp. lactis, Lactobacillus jensenii, Levilactobacillus brevis, Limosilactobacillus fermentum, Paeniclostridium sordellii, Parabacteroides distasonis, Paraclostridium bifermentans, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Prevotella bivia, Prevotella buccae, Prevotella intermedia, Prevotella melaninogenica, Prevotella oris, Pseudoramibacter alactolyticus, Schaalia meyeri, Terrisporobacter glycolicus, Trueperella pyogenes, Veillonella atypica, Veillonella dispar, Veillonella parvula, Weissella confusa | 2003 |
Citron DM, Merriam CV, Tyrrell KL, Warren YA, Fernandez H, Goldstein EJ. |
In vitro activities of ramoplanin, teicoplanin, vancomycin, linezolid, bacitracin, and four other antimicrobials against intestinal anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 47(7), page(s): 2334-2338 | 10.1128/AAC.47.7.2334-2338.2003 |
| Goldstein2003a | antibiotics | Bilophila wadsworthia, Campylobacter gracilis, Bacteroides uniformis, Bacteroides fragilis, Cutibacterium acnes, Clostridium paraputrificum, Eggerthella lenta, Veillonella atypica, Veillonella dispar, Veillonella parvula, Fusobacterium naviforme, Fusobacterium necrophorum, Cutibacterium avidum, Moraxella catarrhalis, Aggregatibacter aphrophilus, Bordetella bronchiseptica, Staphylococcus aureus subsp. aureus, Enterobacter cloacae, Escherichia coli, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Proteus mirabilis, Pseudomonas aeruginosa, Cutibacterium granulosum, Pseudoflavonifractor capillosus, Achromobacter xylosoxidans, Acinetobacter baumannii, Acinetobacter lwoffii, Citrobacter koseri, Haemophilus influenzae, Hafnia alvei, Pantoea agglomerans, Serratia liquefaciens, Serratia marcescens, Stenotrophomonas maltophilia, Streptococcus pneumoniae, Anaerococcus prevotii, Parvimonas micra, Peptostreptococcus anaerobius, Finegoldia magna, Peptoniphilus asaccharolyticus, Prevotella intermedia, Fusobacterium nucleatum, Prevotella melaninogenica, Prevotella bivia, Eikenella corrodens, Prevotella buccae, Prevotella oris | 2003 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
In vitro activities of ABT-492, a new fluoroquinolone, against 155 aerobic and 171 anaerobic pathogens isolated from antral sinus puncture specimens from patients with sinusitis. | Antimicrobial Agents and Chemotherapy | 47(9), page(s): 3008-3011 | 10.1128/AAC.47.9.3008-3011.2003 |
| Stein2003 | antibiotics | 2003 |
Stein GE, Schooley S, Tyrrell KL, Citron DM, Goldstein EJ. |
Bactericidal activities of methoxyfluoroquinolones gatifloxacin and moxifloxacin against aerobic and anaerobic respiratory pathogens in serum. | Antimicrobial Agents and Chemotherapy | 47(4), page(s): 1308-1312 | 10.1128/AAC.47.4.1308-1312.2003 | |
| Brazier2003 | antibiotics | 2003 |
Brazier JS, Hall V, Morris TE, Gal M, Duerden BI. |
Antibiotic susceptibilities of Gram-positive anaerobic cocci: results of a sentinel study in England and Wales. | Journal of Antimicrobial Chemotherapy | 52(2), page(s): 224-228 | 10.1093/jac/dkg316 | |
| Snydman2002 | antibiotics | 2002 |
Snydman, D. R., Jacobus, N. V., McDermott, L. A., Ruthazer, R., Goldstein, E., Finegold, S., Harrell, L., Hecht, D. W., Jenkins, S., Pierson, C., Venezia, R., Rihs, J., & Gorbach, S. L. |
In vitro activities of newer quinolones against bacteroides group organisms. | Antimicrobial Agents and Chemotherapy | 64(10), page(s): 3276-3279 | 10.1128/AAC.46.10.3276-3279.2002 | |
| Goldstein2002 | antibiotics | 2002 |
Goldstein EJ, Citron DM, Merriam CV, Warren YA, Tyrrell KL, Fernandez HT. |
In vitro activities of garenoxacin (BMS-284756) against 170 clinical isolates of nine Pasteurella species. | Antimicrobial Agents and Chemotherapy | 46(9), page(s): 3068-3070 | 10.1128/AAC.46.9.3068-3070.2002 | |
| Finegold2002a | antibiotics | 2002 |
Finegold SM, Molitoris D, Phan VT, Vaisanen ML, Wexler HM. |
Activities of ABT-773 against microaerophilic and fastidious organisms. | Antimicrobial Agents and Chemotherapy | 46(8), page(s): 2716-2719 | 10.1128/AAC.46.8.2716-2719.2002 | |
| Credito2001 | antibiotics | 2001 |
Credito KL, Lin G, Pankuch GA, Bajaksouzian S, Jacobs MR, Appelbaum PC. |
Susceptibilities of Haemophilus influenzae and Moraxella catarrhalis to ABT-773 compared to their susceptibilities to 11 other agents. | Antimicrobial Agents and Chemotherapy | 45(1), page(s): 67-72 | 10.1128/AAC.45.1.67-72.2001 | |
| Betriu2001 | antibiotics | Bacteroides stercoris, Bacteroides caccae, Bacteroides ovatus, Bacteroides thetaiotaomicron, Parabacteroides distasonis, Phocaeicola vulgatus, Bacteroides eggerthii, Bacteroides fragilis, Bacteroides uniformis | 2001 |
Betriu C, Sánchez A, Palau ML, Gómez M, Picazo JJ. |
In vitro activities of MK-0826 and 16 other antimicrobials against Bacteroides fragilis group strains. | Antimicrobial Agents and Chemotherapy | 45(8), page(s): 2372-2374 | 10.1128/AAC.45.8.2372-2374.2001 |
| Kleinkauf2001 | antibiotics | 2001 |
Kleinkauf N, Ackermann G, Schaumann R, Rodloff AC. |
Comparative in vitro activities of gemifloxacin, other quinolones, and nonquinolone antimicrobials against obligately anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 45(6), page(s): 1896-1899 | 10.1128/AAC.45.6.1896-1899.2001 | |
| Citron2001 | antibiotics | Actinomyces gerencseriae, Actinomyces israelii, Anaerococcus prevotii, Bacteroides fragilis, Bacteroides heparinolyticus, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bilophila wadsworthia, Campylobacter gracilis, Campylobacter ureolyticus, Clostridioides difficile, Clostridium innocuum, Clostridium novyi A, Clostridium paraputrificum, Clostridium perfringens, Clostridium subterminale, Collinsella aerofaciens, Cutibacterium acnes, Eggerthella lenta, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Finegoldia magna, Fusobacterium mortiferum, Fusobacterium nucleatum, Fusobacterium russii, Fusobacterium varium, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus jensenii, Levilactobacillus brevis, Limosilactobacillus fermentum, Olsenella uli, Parabacteroides distasonis, Paraclostridium bifermentans, Parvimonas micra, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Prevotella bivia, Prevotella buccae, Prevotella intermedia, Prevotella melaninogenica, Prevotella oris, Schaalia meyeri, Schaalia odontolytica, Streptococcus constellatus subsp. constellatus, Tissierella praeacuta, Streptococcus intermedius | 2001 |
Citron DM, Appleman MD. |
Comparative in vitro activities of ABT-773 against 362 clinical isolates of anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 45(1), page(s): 345-348 | 10.1128/AAC.45.1.345-348.2001 |
| Goldstein2000 | antibiotics | Aeromonas tecta, Anaerococcus tetradius, Bacteroides zoogleoformans, Corynebacterium accolens, Corynebacterium argentoratense, Corynebacterium jeikeium, Corynebacterium minutissimum, Corynebacterium propinquum, Corynebacterium ulcerans, Enterococcus avium, Enterococcus durans, Enterococcus malodoratus, Haemophilus parainfluenzae, Moraxella osloensis, Neisseria elongata, Peptoniphilus ivorii, Porphyromonas cangingivalis, Prevotella enoeca, Propionibacterium freudenreichii, Propionimicrobium lymphophilum, Rothia dentocariosa, Staphylococcus capitis subsp. capitis, Staphylococcus cohnii subsp. cohnii, Staphylococcus epidermidis, Staphylococcus hominis subsp. hominis, Staphylococcus hyicus, Staphylococcus intermedius, Staphylococcus warneri, Staphylococcus xylosus, Streptococcus dysgalactiae, Streptococcus mitis, Streptococcus mutans, Bacteroides heparinolyticus, Eikenella corrodens, Aggregatibacter aphrophilus, Bordetella bronchiseptica, Moraxella catarrhalis, Porphyromonas canoris, Porphyromonas macacae, Prevotella intermedia, Cutibacterium acnes, Enterococcus faecalis, Fusobacterium necrophorum, Fusobacterium nucleatum, Peptostreptococcus anaerobius, Prevotella bivia, Streptococcus constellatus subsp. constellatus, Streptococcus pyogenes, Porphyromonas levii, Prevotella denticola, Prevotella loescheii, Cutibacterium avidum, Peptostreptococcus stomatis, Actinomyces viscosus, Porphyromonas gingivalis, Peptoniphilus asaccharolyticus, Actinomyces naeslundii, Winkia neuii, Pasteurella dagmatis, Pasteurella multocida, Staphylococcus aureus subsp. aureus, Fusobacterium russii, Finegoldia magna, Parvimonas micra, Prevotella buccae, Streptococcus intermedius, Anaerococcus prevotii, Actinomyces israelii | 2000 |
Goldstein EJ, Citron DM, Merriam CV, Warren Y, Tyrrell K. |
Comparative in vitro activities of GAR-936 against aerobic and anaerobic animal and human bite wound pathogens. | Antimicrobial Agents and Chemotherapy | 44(10), page(s): 2747-2751 | 10.1128/AAC.44.10.2747-2751.2000 |
| Goldstein2000a | antibiotics | Acidaminococcus fermentans, Alistipes putredinis, Anaerococcus prevotii, Anaerococcus tetradius, Bifidobacterium breve, Bilophila wadsworthia, Blautia producta, Campylobacter gracilis, Campylobacter ureolyticus, Clostridioides difficile, Clostridium butyricum, Clostridium cadaveris, Clostridium cochlearium, Clostridium innocuum, Clostridium leptum, Clostridium perfringens, Clostridium sporogenes, Clostridium symbiosum, Clostridium tertium, Collinsella aerofaciens, Cutibacterium acnes, Cutibacterium avidum, Desulfovibrio piger, Dialister pneumosintes, Eggerthella lenta, Eggerthia catenaformis, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Eubacterium limosum, Faecalicatena contorta, Finegoldia magna, Fusobacterium gonidiaformans, Fusobacterium mortiferum, Fusobacterium necrophorum, Fusobacterium nucleatum, Fusobacterium varium, Lacrimispora sphenoides, Lacticaseibacillus casei, Lactiplantibacillus plantarum, Lactobacillus acidophilus, Lactobacillus delbrueckii subsp. delbrueckii, Limosilactobacillus fermentum, Odoribacter splanchnicus, Paeniclostridium sordellii, Parabacteroides merdae, Paraclostridium bifermentans, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptostreptococcus anaerobius, Porphyromonas asaccharolytica, Porphyromonas gingivalis, Prevotella bivia, Prevotella buccae, Prevotella corporis, Prevotella intermedia, Prevotella melaninogenica, Prevotella oris, Pseudoflavonifractor capillosus, Schaalia odontolytica, Slackia heliotrinireducens, Sutterella wadsworthensis, Tissierella praeacuta, Veillonella atypica, Veillonella dispar, Veillonella parvula, Weissella confusa, Bacteroides caccae, Bacteroides stercoris, Bacteroides uniformis | 2000 |
Goldstein EJ, Citron DM, Vreni Merriam C, Warren Y, Tyrrell KL. |
Comparative In vitro activities of ertapenem (MK-0826) against 1,001 anaerobes isolated from human intra-abdominal infections. | Antimicrobial Agents and Chemotherapy | 44(9), page(s): 2389-2394 | 10.1128/AAC.44.9.2389-2394.2000 |
| Goldstein1999 | antibiotics | Anaerococcus prevotii, Bacteroides caccae, Bacteroides fragilis, Bacteroides ovatus, Bacteroides stercoris, Bacteroides thetaiotaomicron, Bacteroides uniformis, Clostridioides difficile, Clostridium innocuum, Clostridium perfringens, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Finegoldia magna, Fusobacterium mortiferum, Fusobacterium necrogenes, Fusobacterium necrophorum, Fusobacterium nucleatum, Fusobacterium ulcerans, Fusobacterium varium, Parabacteroides distasonis, Parvimonas micra, Peptoniphilus asaccharolyticus, Peptostreptococcus anaerobius, Phocaeicola vulgatus, Porphyromonas asaccharolytica, Prevotella bivia, Prevotella buccae, Prevotella intermedia, Prevotella melaninogenica | 1999 |
Goldstein EJ, Citron DM, Warren Y, Tyrrell K, Merriam CV. |
In vitro activity of gemifloxacin (SB 265805) against anaerobes. | Antimicrobial Agents and Chemotherapy | 43(9), page(s): 2231-2235 | 10.1128/AAC.43.9.2231 |
| Schaumann1999 | antibiotics | Bacteroides caccae, Bacteroides fragilis, Bacteroides ovatus, Bacteroides thetaiotaomicron, Bilophila wadsworthia, Clostridioides difficile, Clostridium cadaveris, Clostridium innocuum, Clostridium paraputrificum, Clostridium perfringens, Enterocloster clostridioformis, Erysipelatoclostridium ramosum, Fusobacterium mortiferum, Fusobacterium naviforme, Fusobacterium necrogenes, Fusobacterium varium, Parabacteroides distasonis, Paraclostridium bifermentans, Prevotella buccalis, Prevotella disiens, Prevotella oralis, Terrisporobacter glycolicus | 1999 |
Schaumann R, Ackermann G, Pless B, Claros MC, Rodloff AC. |
In vitro activities of gatifloxacin, two other quinolones, and five nonquinolone antimicrobials against obligately anaerobic bacteria. | Antimicrobial Agents and Chemotherapy | 43(11), page(s): 2783-2786 | 10.1128/AAC.43.11.2783 |
| Goldstein1999a | antibiotics | Streptococcus constellatus subsp. constellatus, Streptococcus intermedius, Streptococcus mitis, Haemophilus parainfluenzae, Staphylococcus hyicus, Staphylococcus intermedius, Streptococcus mutans, Aggregatibacter actinomycetemcomitans, Neisseria canis, Neisseria cinerea, Neisseria subflava, Bacteroides heparinolyticus, Fusobacterium gonidiaformans, Aeromonas tecta, Porphyromonas macacae, Staphylococcus aureus subsp. aureus, Fusobacterium necrophorum, Moraxella catarrhalis, Peptoniphilus asaccharolyticus, Staphylococcus epidermidis, Peptostreptococcus anaerobius, Finegoldia magna, Staphylococcus warneri, Staphylococcus simulans, Fusobacterium russii, Prevotella intermedia, Prevotella loescheii, Prevotella denticola, Prevotella melaninogenica, Prevotella bivia, Fusobacterium nucleatum, Porphyromonas gingivalis, Pasteurella multocida, Eikenella corrodens, Porphyromonas cangingivalis, Porphyromonas canoris, Prevotella buccae | 1999 |
Goldstein EJ, Citron DM, Merriam CV, Tyrrell K, Warren Y. |
Activity of gatifloxacin compared to those of five other quinolones versus aerobic and anaerobic isolates from skin and soft tissue samples of human and animal bite wound infections. | Antimicrobial Agents and Chemotherapy | 43(6), page(s): 1475-1479 | 10.1128/AAC.43.6.1475 |
| Goldstein1999b | antibiotics | Fusobacterium mortiferum, Fusobacterium varium, Bacteroides heparinolyticus, Campylobacter ureolyticus, Bilophila wadsworthia, Campylobacter gracilis, Fusobacterium russii, Prevotella intermedia, Fusobacterium nucleatum, Prevotella buccae, Prevotella oris, Fusobacterium necrogenes, Fusobacterium ulcerans, Fusobacterium gonidiaformans, Aeromonas tecta, Porphyromonas macacae, Anaerobiospirillum succiniciproducens, Anaerobiospirillum thomasii, Fusobacterium nucleatum subsp. animalis, Fusobacterium necrophorum, Veillonella atypica, Veillonella dispar, Veillonella parvula, Fusobacterium naviforme, Prevotella loescheii, Prevotella denticola, Porphyromonas gingivalis, Porphyromonas cangingivalis, Porphyromonas canoris, Porphyromonas levii, Clostridioides difficile, Erysipelatoclostridium ramosum, Actinomyces israelii, Schaalia odontolytica, Porphyromonas asaccharolytica, Peptoniphilus asaccharolyticus, Anaerococcus prevotii, Parvimonas micra, Enterocloster clostridioformis, Clostridium innocuum, Finegoldia magna, Peptoniphilus asaccharolyticus, Prevotella melaninogenica, Prevotella bivia | 1999 |
Goldstein EJ, Citron DM, Merriam CV, Warren Y, Tyrrell K. |
Activities of telithromycin (HMR 3647, RU 66647) compared to those of erythromycin, azithromycin, clarithromycin, roxithromycin, and other antimicrobial agents against unusual anaerobes. | Antimicrobial Agents and Chemotherapy | 43(11), page(s): 2801-2805 | 10.1128/AAC.43.11.2801 |
| Goldstein1999c | antibiotics | 1999 |
Goldstein EJ, Citron DM, Vreni Merriam C, Tyrrell K, Warren Y. |
Activities of gemifloxacin (SB 265805, LB20304) compared to those of other oral antimicrobial agents against unusual anaerobes. | Antimicrobial Agents and Chemotherapy | 43(11), page(s): 2726-2730 | 10.1128/AAC.43.11.2726 | |
| Citron1997 | antibiotics | Tissierella praeacuta, Enterococcus faecalis, Enterococcus avium, Enterococcus durans, Staphylococcus xylosus, Enterococcus faecium, Proteus vulgaris, Providencia rettgeri, Parabacteroides merdae, Citrobacter amalonaticus, Citrobacter freundii, Comamonas testosteroni, Enterococcus casseliflavus, Klebsiella pneumoniae subsp. ozaenae, Lactococcus cremoris, Lactococcus lactis subsp. lactis, Morganella morganii, Providencia stuartii, Pseudomonas alcaligenes, Streptococcus salivarius, Prevotella buccae, Porphyromonas levii, Streptococcus mitis, Fusobacterium mortiferum, Fusobacterium varium, Erysipelatoclostridium ramosum, Porphyromonas asaccharolytica, Clostridium paraputrificum, Eggerthella lenta, Campylobacter gracilis, Bilophila wadsworthia, Staphylococcus aureus subsp. aureus, Enterobacter cloacae, Escherichia coli, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Proteus mirabilis, Pseudomonas aeruginosa, Prevotella intermedia, Prevotella bivia, Fusobacterium nucleatum, Prevotella oralis, Clostridium subterminale, Anaerococcus prevotii, Parvimonas micra, Staphylococcus capitis subsp. capitis, Staphylococcus haemolyticus, Bacteroides uniformis, Phocaeicola vulgatus, Bacteroides stercoris, Staphylococcus warneri, Staphylococcus simulans, Staphylococcus capitis subsp. capitis, Staphylococcus epidermidis | 1997 |
Citron DM, Appleman MD. |
Comparative in vitro activities of trovafloxacin (CP-99,219) against 221 aerobic and 217 anaerobic bacteria isolated from patients with intra-abdominal infections. | Antimicrobial Agents and Chemotherapy | 41(10), page(s): 2312-2316 | 10.1128/AAC.41.10.2312 |
| Shonekan1992 | antibiotics | 1992 |
Shonekan D, Mildvan D, Handwerger S. |
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The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria. | PNAS USA | 105(39), page(s): 15064-15069 | 10.1073/pnas.0803124105 | |
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van Muijlwijk, G.H., Rice, T.A., Flavell, R.A., Palm, N.W., and de Zoete, M.R. |
Allobaculum mucilyticum sp. nov. and Allobaculum fili sp. nov., isolated from the human intestinal tract | International Journal of Systematic and Evolutionary Microbiology | 73(1), page(s): 005635 | 10.1099/ijsem.0.005635 |
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Mark Lindholm, Kyaw Min Aung, Sun Nyunt Wai & Jan Oscarsson |
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Endo A, Okada S. |
Lactobacillus composti sp. nov., a lactic acid bacterium isolated from a compost of distilled shochu residue. | International Journal of Systematic and Evolutionary Microbiology | 57(4), page(s): 870-872 | 10.1099/ijs.0.64743-0 |
| Saroha2023 | summary, general characteristics, enzymes, acid from carbohydrates | Limosilactobacillus walteri | 2023 |
Tanu Saroha, Shikha Sharma, Stanzin Choksket, Suresh Korpole, Prabhu B Patil |
Limosilactobacillus walteri sp. nov., a novel probiotic antimicrobial lipopeptide-producing bacterium. | FEMS Microbiology Letters | 370, page(s): fnad004 | 10.1093/femsle/fnad004 |
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Ghimire S, Wongkuna S, Scaria J. |
Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces. | PeerJ | 8, page(s): e10071 | 10.7717/peerj.10071 |
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Tidjani Alou M, Khelaifia S, La Scola B, Cassir N. |
"Lachnoclostridium touaregense," a new bacterial species isolated from the human gut microbiota. | New Microbes New Infections | 14, page(s): 51-52 | 10.1016/j.nmni.2016.07.007 |
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Ndongo S, Tall ML, Ngom II, Fournier PE, Levasseur A, Raoult D, Khelaifia S. |
Massilicoli timonensis sp. nov., a new bacterium isolated from the human microbiota. | New Microbes New Infections | 32, page(s): 100592 | 10.1016/j.nmni.2019.100592 |
| Mbaye2021 | summary, general characteristics, enzymes, acid from carbohydrates | Peptoniphilus colimassiliensis, Peptoniphilus urinimassiliensis | 2021 |
Mbaye, Babacar & Lo, Cheikh & Niokhor, Dione & Benabdelkader, Sarah & Tidjani Alou, Maryam & Brahimi, Samy & Armstrong, Nicholas & Alibar, Stéphane & Raoult, Didier & Moal, Valerie & Million, Matthieu & Fournier, Pierre-Edouard & Fenollar, Florence |
Peptoniphilus Colimassiliensis sp. nov. and Peptoniphilus Urinimassiliensis sp. nov., Two New Species Isolated From Humans. | Research Square | 10.21203/rs.3.rs-1189073/v1 | |
| Togo2016e | summary, general characteristics | Ruminococcus phoceensis | 2016 |
Togo AH, Maraninchi M, Bittar F, Raoult D, Million M. |
"Ruminococcus phoceensis," a new species identified from human stool from an obese patient before bariatric surgery. | New Microbes New Infections | 14, page(s): 67-68 | 10.1016/j.nmni.2016.09.004 |
| Maaloum2022 | summary, genetics | Ottowia massiliensis | 2022 |
Maaloum M, Lo CI, Ndongo S, Meng MM, Saile R, Alibar S, Raoult D, Fournier PE. |
Ottowia massiliensis sp. nov., a new bacterium isolated from a fresh, healthy human fecal sample. | FEMS Microbiology Letters | 369(1), page(s): fnac086 | 10.1093/femsle/fnac086 |
| Fonkou2019 | summary, general characteristics, enzymes, acid from carbohydrates, utilisation, antibiotics | Enterococcus timonensis | 2019 |
Mbogning Fonkou MD, Bilen M, Gouba N, Khelaifia S, Cadoret F, Nguyen TT, Richez M, Bittar F, Fournier PE, Raoult D, Dubourg G. |
Non-contiguous finished genome sequencing and description of Enterococcus timonensis sp. nov. isolated from human sputum. | New Microbes New Infections | 29, page(s): 100532 | 10.1016/j.nmni.2019.100532 |
| Bonnet2019a | summary, general characteristics, enzymes, acid from carbohydrates | Coprococcus phoceensis | 2019 |
Bonnet M, Ricaboni D, Mailhe M, Vitton V, Benezech A, Delerce J, Raoult D, Cassir N, Lascola B, Khelaifia S. |
Genome sequence and description of Coprococcus phoceensis gen. nov., sp. nov., a new bacterial genus isolated from the human left colon. | New Microbes New Infections | 30, page(s): 100548 | 10.1016/j.nmni.2019.100548 |
| Kieu2021 | summary, general characteristics, enzymes, acid from carbohydrates, antibiotics | Clostridium culturomicium, Clostridium jeddahitimonense | 2021 |
Kieu HT, Garrigou N, Fadlane A, Brechard L, Armstrong N, Decloquement P, Yasir M, Azhar EI, Al-Masaudi SB, Lagier JC, Tidjani Alou M, Raoult D. |
Clostridium culturomicium sp. nov. and Clostridium jeddahitimonense sp. nov., novel members of the Clostridium genus isolated from the stool of an obese Saudi Arabian. | Current Microbiology | 78(9), page(s): 3586-3595 | 10.1007/s00284-021-02616-4 |
| Traore2016d | summary, general characteristics | Beduinella massiliensis | 2016 |
Traore SI, Azhar EI, Yasir M, Bibi F, Delerce J, Fournier PE, Jiman-Fatani AA, Lagier JC, Raoult D. |
'Beduinella massiliensis', gen. nov., sp. nov. a new genus representing a new family in the phylum Firmicutes, and proposal of Beduinellaceae fam. nov. | New Microbes New Infections | 14, page(s): 10-12 | 10.1016/j.nmni.2016.07.012 |
| Alou2016i | summary, general characteristics | Africanella massiliensis | 2016 |
Alou MT, Fournier PE, Raoult D. |
"Africanella massiliensis," a new bacterial genus isolated from human gut microbiota. | New Microbes New Infections | 12, page(s): 99-100 | 10.1016/j.nmni.2016.05.008 |
| Benabdelkader2020 | summary, general characteristics, enzymes, acid from carbohydrates | Parabacteroides pacaensis, Parabacteroides provencensis | 2020 |
Benabdelkader S, Naud S, Lo CI, Fadlane A, Traore SI, Aboudharam G, La Scola B. |
Parabacteroides pacaensis sp. nov. and Parabacteroides provencensis sp. nov., two new species identified from human gut microbiota. | New Microbes New Infections | 34, page(s): 100642 | 10.1016/j.nmni.2019.100642 |
| Mailhe2016f | summary, general characteristics | Millionella massiliensis | 2016 |
Mailhe M, Ricaboni D, Benezech A, Cadoret F, Fournier PE, Raoult D. |
'Millionella massiliensis' gen. nov., sp. nov., a new bacterial species isolated from human right colon. | New Microbes New Infections | 17, page(s): 11-12 | 10.1016/j.nmni.2016.11.016 |
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