Moderate Colonising Gut Bacteria

★ There are 141 'moderate colonisers' in the collection.

Bacteria Phylum O2 Tol Pathogenicity Studies Num Studies
Absiella innocuum Firmicutes None None Byrd2020 1
Acidaminococcus intestini Firmicutes ANA Rare Opportunist Nielsen2014, RajilicStojanovic2014, Chung2016, Lagier2016, Rothschild2018, Zou2019, Almeida2019, Chung2019, Forster, King2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Minerbi2019 20
Adlercreutzia equolifaciens Actinobacteria SANA Non/unknown Pathogen Zupancic2012, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, King2019, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Vachida2019, Wang2020a 15
Agathobaculum butyriciproducens Firmicutes SANA Non/unknown Pathogen Zou2019, Byrd2020, Minerbi2019 3
Alistipes finegoldii Bacteroidetes SANA Opportunistic Infection Walker2011, Zupancic2012, Nielsen2014, RajilicStojanovic2014, Browne2016, Lagier2016, Rothschild2018, Forster2019, King2019, Byrd2020, De2020, New2022, Chen2020, Hu2019, Vachida2019, Wang2020a, Minerbi2019 17
Alistipes ihumii Bacteroidetes SANA Non/unknown Pathogen Lagier2016, Byrd2020, Vachida2019, Minerbi2019 4
Alistipes indistinctus Bacteroidetes SANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Qin2012, Minerbi2019, Karlsson2013, PerezBrocal2015 19
Alistipes obesi Bacteroidetes SANA Non/unknown Pathogen RajilicStojanovic2014, Byrd2020, Jeong2021, Urban2020, Minerbi2019 5
Alistipes onderdonkii Bacteroidetes SANA Opportunistic Infection Frank2007, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Urban2020, Minerbi2019 18
Alistipes senegalensis Bacteroidetes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Chen2020, Hu2019, Vachida2019, Minerbi2019 9
Alistipes timonensis Bacteroidetes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Minerbi2019 5
Anaerostipes caccae Firmicutes SANA Possible Pathogen Tyakht2013, Nielsen2014, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Wang2020a, Qin2012, Minerbi2019 17
Anaerostipes hadrus Firmicutes SANA Non/unknown Pathogen Frank2007, Nielsen2014, RajilicStojanovic2014, Browne2016, Chung2016, Lagier2016, Rothschild2018, Zou2019, Forster2019, King2019, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Wang2020a, Minerbi2019 21
Anaerotignum lactatifermentans Firmicutes SANA Non/unknown Pathogen McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Jeong2021, Minerbi2019 8
Anaerotruncus colihominis Firmicutes SANA Opportunistic Pathogen Walker2011, Zupancic2012, Tyakht2013, RajilicStojanovic2014, Salonen2014, Browne2016, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Urban2020, Qin2012, Minerbi2019 22
Anaerotruncus rubiinfantis Firmicutes ANA Non/unknown Pathogen Lagier2016, Byrd2020, Minerbi2019 3
Bacteroides acidifaciens Bacteroidetes SANA Non/unknown Pathogen Forster2019, De2020, Urban2020, Minerbi2019, Li2019b 5
Bacteroides bouchesdurhonensis Bacteroidetes ANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Bacteroides cellulosilyticus Bacteroidetes SANA Rare Opportunist Pfleiderer2013, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, King2019, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Wang2020a, Urban2020, Minerbi2019, Karlsson2013 22
Bacteroides clarus Bacteroidetes SANA Non/unknown Pathogen Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Urban2020, Minerbi2019, Karlsson2013 20
Bacteroides congonensis Bacteroidetes ANA Non/unknown Pathogen Lagier2016, Byrd2020, Urban2020 3
Bacteroides cutis Bacteroidetes SANA Rare Opportunist Byrd2020 1
Bacteroides faecis Bacteroidetes ANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Vachida2019, Urban2020, Minerbi2019 13
Bacteroides fluxus Bacteroidetes SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Urban2020 11
Bacteroides gallinarum Bacteroidetes SANA Non/unknown Pathogen Forster2019, Byrd2020, Urban2020, Minerbi2019 4
Bacteroides mediterraneensis Bacteroidetes ANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Bacteroides nordii Bacteroidetes SANA Rare Opportunist Pfleiderer2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Vachida2019, Urban2020, Minerbi2019, PerezBrocal2015 15
Bacteroides oleiciplenus Bacteroidetes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Dubinkina2017, Hu2019, Vachida2019, Urban2020 9
Bacteroides pectinophilus Bacteroidetes SANA Opportunistic Infection Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Byrd2020, De2020, Yang2020, Dubinkina2017, Jie2017, Zeller2014, Vachida2019, Urban2020, Qin2012, Minerbi2019, LeChatelier2013, Karlsson2013 18
Bacteroides salyersiae Bacteroidetes SANA Opportunistic Pathogen Zupancic2012, RajilicStojanovic2014, Browne2016, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Jeong2021, Vachida2019, Urban2020, Minerbi2019 15
Bacteroides stercorirosoris Bacteroidetes SANA Non/unknown Pathogen Byrd2020, Yang2020, Urban2020, Minerbi2019 4
Barnesiella intestinihominis Bacteroidetes SANA Non/unknown Pathogen McLaughlin2010, Pfleiderer2013, RajilicStojanovic2014, Chung2016, Lagier2016, Rothschild2018, Zou2019, Chung2019, Forster2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Vachida2019, Minerbi2019 16
Bdellovibrio bacteriovorus Bdellovibrionota AER Non/unknown Pathogen 0
Bifidobacterium angulatum Actinobacteria SANA Non/unknown Pathogen MacFarlane2004, Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, De2020, New2022, Dubinkina2017, Jie2017, Zeller2014, Vachida2019, Moore1995 15
Bifidobacterium animalis Actinobacteria ANA Rare Opportunist Pfleiderer2013, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Almeida2019, Forster2019, Byrd2020, De2020, New2022, Chen2020, Hu2019, Zeller2014, Vachida2019, Wang2020a, Minerbi2019, Karlsson2013 19
Bifidobacterium catenulatum Actinobacteria ANA Non/unknown Pathogen Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Chung2019, Forster2019, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Karlsson2013 17
Bifidobacterium dentium Actinobacteria ANA Opportunistic Infection Mangin2004, MacFarlane2004, Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, King2019, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Karlsson2013 20
Bifidobacterium longum subsp. infantis Actinobacteria ANA Non/unknown Pathogen Moore1974, Finegold1974, Holdeman1976, Finegold1977, Mangin2004, Woodmansey2004, Pandey2012, Tyakht2013, Lagier2016, King2019, Byrd2020, Dubinkina2017, Jie2017, Wang2018 14
Bittarella massiliensis Firmicutes ANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Blautia hansenii Firmicutes SANA Non/unknown Pathogen Moore1974, Finegold1977, Walker2011, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, King2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Zeller2014, Vachida2019, Wang2020a, Qin2012, LeChatelier2013 22
Blautia hydrogenotrophica Firmicutes SANA Non/unknown Pathogen Pfleiderer2013, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Browne2016, Lagier2016, Rothschild2018, Forster2019, Byrd2020, De2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Qin2012, Minerbi2019, LeChatelier2013, Karlsson2013 21
Blautia massiliensis Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Minerbi2019 5
Blautia wexlerae Firmicutes SANA Non/unknown Pathogen Dubourg2013, Nielsen2014, RajilicStojanovic2014, Cassir2015, Browne2016, Lagier2016, Zou2019, Almeida2019, Forster2019, Byrd2020, Yang2020, Dubinkina2017, Minerbi2019 13
Butyricimonas virosa Bacteroidetes ANA Opportunistic Infection Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, New2022, Minerbi2019 9
Catenibacterium mitsuokai Firmicutes SANA Non/unknown Pathogen Walker2011, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Salonen2014, Browne2016, Lagier2016, Rothschild2018, Forster2019, Byrd2020, De2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Vachida2019, Qin2012, Minerbi2019, Karlsson2013 21
Clostridium methylpentosum Firmicutes SANA Non/unknown Pathogen Walker2011, Zupancic2012, Tyakht2013, RajilicStojanovic2014, Lagier2016, Dubinkina2017, Jie2017, Zeller2014, Vachida2019, Qin2012, PerezBrocal2015 11
Clostridium paraputrificum Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, Taylor1985, Benno1986, Benno1989, McLaughlin2010, Walker2011, Zupancic2012, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Browne2016, Cassir2015, Lagier2016, Byrd2020, Yang2020 17
Clostridium scindens Firmicutes SANA Non/unknown Pathogen Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Yang2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Qin2012, Minerbi2019, Karlsson2013 15
Clostridium tertium Firmicutes ANA Opportunistic Pathogen Finegold1977, Benno1984, Taylor1985, Benno1986, Benno1989, Woodmansey2004, Walker2011, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Yang2020, Minerbi2019 15
Collinsella intestinalis Actinobacteria SANA Non/unknown Pathogen Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Jeong2021, Zeller2014, Vachida2019, Wang2020a, Minerbi2019 15
Coprobacillus cateniformis Firmicutes SANA Non/unknown Pathogen Zupancic2012, Pfleiderer2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Wang2018, Vachida2019, Wang2020a, LeChatelier2013, PerezBrocal2015 15
Coprobacter fastidiosus Bacteroidetes SANA Non/unknown Pathogen Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Vachida2019, Minerbi2019 10
Coprobacter secundus Bacteroidetes SANA Non/unknown Pathogen Byrd2020, Yang2020 2
Cutibacterium acnes Actinobacteria Micr Opportunistic Pathogen Moore1974, Holdeman1976, Finegold1977, Taylor1985, Woodmansey2004, Walker2011, Dubourg2013, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Zou2019, Almeida2019, Forster2019, Byrd2020, Yang2020, New2022, Zeller2014, Vachida2019, Li2019b, PerezBrocal2015 22
Desulfovibrio piger Proteobacteria SANA Non/unknown Pathogen Walker2011, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Chung2016, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Minerbi2019, Karlsson2013 21
Dialister invisus Firmicutes SANA Opportunistic Infection Wang2005, McLaughlin2010, Walker2011, Zupancic2012, Nielsen2014, RajilicStojanovic2014, Lagier2016, Chung2019, Byrd2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Minerbi2019, Karlsson2013 19
Dysosmobacter welbionis Firmicutes SANA Non/unknown Pathogen New2022 1
Eisenbergiella massiliensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020, Minerbi2019 3
Eisenbergiella tayi Firmicutes SANA Opportunistic Infection Zou2019, Forster2019, Byrd2020, Yang2020, Minerbi2019 5
Enterobacter cloacae Proteobacteria FANA Known Pathogen Finegold1977, Benno1984, McLaughlin2010, Pfleiderer2013, Tyakht2013, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Rothschild2018, Almeida2019, Forster2019, Byrd2020, De2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a 22
Enterocloster asparagiformis Firmicutes SANA Rare Opportunist Tyakht2013, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Qin2012, LeChatelier2013 13
Enterocloster citroniae Firmicutes SANA Opportunistic Pathogen Walker2011, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Vachida2019, Qin2012, PerezBrocal2015 15
Enterococcus casseliflavus Firmicutes FANA Opportunistic Pathogen Pandey2012, Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Zou2019, Almeida2019, Forster2019, Byrd2020, De2020, Yang2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 15
Enterococcus devriesei Firmicutes FANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Enterococcus durans Firmicutes FANA Opportunistic Pathogen Finegold1977, Benno1986, Benno1989, MacFarlane2004, Woodmansey2004, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Zou2019, Forster2019, Byrd2020, De2020, Yang2020, New2022 15
Eubacterium biforme Firmicutes SANA Non/unknown Pathogen Moore1974, Holdeman1976, Finegold1977, Benno1986, Heilig2002, McLaughlin2010, Walker2011, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Chen2020, Dubinkina2017, Hu2019, Jie2017, Moore1995, Karlsson2013 20
Eubacterium dolichum Firmicutes SANA Non/unknown Pathogen Finegold1974, Woodmansey2004, Wang2005, Walker2011, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Yang2020, Dubinkina2017, Hu2019, Jie2017, Li2019b, LeChatelier2013 16
Eubacterium limosum Firmicutes SANA Opportunistic Pathogen Moore1974, Finegold1974, Benno1989, MacFarlane2004, Woodmansey2004, Pfleiderer2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Forster2019, King2019, Byrd2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Qin2012 18
Eubacterium ramulus Firmicutes SANA Non/unknown Pathogen Woodmansey2004, McLaughlin2010, Walker2011, RajilicStojanovic2014, Browne2016, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Chen2020, Hu2019, Jeong2021, Vachida2019, Minerbi2019 15
Faecalicatena faecis Firmicutes None None Byrd2020 1
Faecalicatena gnavus Firmicutes None None Byrd2020 1
Faecalicatena lactaris Firmicutes None None Byrd2020 1
Faecalicatena torques Firmicutes None None Byrd2020 1
Fournierella massiliensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Fusicatenibacter saccharivorans Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Browne2016, Lagier2016, Zou2019, Chung2019, Forster2019, Byrd2020, Yang2020, Minerbi2019 9
Fusobacterium mortiferum Fusobacteria SANA Opportunistic Pathogen Moore1974, Benno1984, Benno1986, Benno1989, Tyakht2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Minerbi2019 18
Fusobacterium varium Fusobacteria SANA Opportunistic Pathogen Benno1986, Benno1989, Wang2005, Tyakht2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Zeller2014, Vachida2019 17
Gemmiger formicilis Firmicutes SANA Non/unknown Pathogen MacFarlane2004, deGoffau2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Minerbi2019, Moore1995 8
Gemmiger variabile Firmicutes None None Byrd2020 1
Gordonibacter pamelaeae Actinobacteria SANA Possible Pathogen Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, King2019, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Vachida2019, Qin2012 15
Holdemanella biformis Firmicutes SANA Non/unknown Pathogen Woodmansey2004, Salonen2014, Zou2019, Forster2019, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Jeong2021, Zeller2014, Wang2018, Vachida2019, Wang2020a, Minerbi2019, PerezBrocal2015 15
Holdemania filiformis Firmicutes SANA Non/unknown Pathogen Walker2011, Tyakht2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Wang2020a, Urban2020, Qin2012, Minerbi2019, LeChatelier2013 19
Intestinimonas butyriciproducens Firmicutes SANA Non/unknown Pathogen Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, King2019, Byrd2020, New2022, Jeong2021, Wang2020a, Minerbi2019 11
Intestinimonas massiliensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020, Minerbi2019 3
Klebsiella aerogenes Proteobacteria Micr Opportunistic Pathogen Finegold1977, Favier2002, RajilicStojanovic2014, Salonen2014, Cassir2015, Lagier2016, Almeida2019, Forster2019, King2019, Byrd2020, De2020, Yang2020, New2022, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a 18
Klebsiella oxytoca Proteobacteria Micr Opportunistic Pathogen Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Forster2019, Byrd2020, Yang2020, New2022, Chen2020, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a 15
Lachnospira rogosae Firmicutes None None Byrd2020 1
Lacrimispora saccharolytica Firmicutes SANA Non/unknown Pathogen Lagier2016, King2019, Byrd2020, New2022, Dubinkina2017, Zeller2014, Wang2020a, Qin2012, LeChatelier2013 9
Lacticaseibacillus rhamnosus Firmicutes FANA Rare Opportunist Heilig2002, Woodmansey2004, DalBello2006, Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, King2019, Byrd2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Wang2020a, Urban2020 18
Lactiplantibacillus plantarum Firmicutes FANA Rare Opportunist Finegold1974, Finegold1977, Benno1989, Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Wang2020a, Karlsson2013 19
Lactobacillus crispatus Firmicutes FANA Rare Opportunist Finegold1977, Heilig2002, DalBello2006, Tyakht2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a 17
Lactobacillus gasseri Firmicutes FANA Rare Opportunist Benno1986, Benno1989, Heilig2002, DalBello2006, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Almeida2019, Forster2019, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Karlsson2013 21
Lawsonibacter asaccharolyticus Firmicutes SANA Non/unknown Pathogen Byrd2020 1
Marvinbryantia formatexigens Firmicutes SANA Non/unknown Pathogen Zupancic2012, Tyakht2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Chung2019, Forster2019, Byrd2020, De2020, Dubinkina2017, Jie2017, Zeller2014, Vachida2019, Qin2012, LeChatelier2013, Karlsson2013 16
Massilimicrobiota timonensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Jeong2021 2
Massilioclostridium coli Firmicutes ANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Megamonas hypermegale Firmicutes SANA Non/unknown Pathogen Moore1974, Benno1986, Benno1989, Tyakht2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Rothschild2018, King2019, Byrd2020, Dubinkina2017, Hu2019, Vachida2019, Wang2020a, Li2019b 15
Megasphaera elsdenii Firmicutes SANA Opportunistic Pathogen Finegold1974, Benno1984, Benno1986, Benno1989, Mangin2004, Walker2011, Zupancic2012, Nielsen2014, RajilicStojanovic2014, Salonen2014, Lagier2016, Almeida2019, Byrd2020, Byrd2020, New2022, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Minerbi2019 21
Methanobrevibacter smithii Euryarchaeota SANA Non/unknown Pathogen Nam2008a, Tyakht2013, Nielsen2014, Lagier2016, Rothschild2018, King2019, Chen2020, Dubinkina2017, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Urban2020, Minerbi2019, LeChatelier2013, Karlsson2013 17
Mitsuokella multacida Firmicutes SANA Opportunistic Pathogen Benno1986, Benno1989, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Salonen2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a 18
Neobittarella massiliensis Firmicutes SANA Non/unknown Pathogen 0
Oxalobacter formigenes Proteobacteria SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Rothschild2018, Almeida2019, Forster2019, Byrd2020, De2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Minerbi2019, Li2019b, PerezBrocal2015 22
Parabacteroides goldsteinii Bacteroidetes SANA Opportunistic Pathogen Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Jeong2021, Vachida2019, Urban2020, Minerbi2019 14
Parabacteroides johnsonii Bacteroidetes SANA Non/unknown Pathogen Walker2011, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Vachida2019, Qin2012, Minerbi2019, Karlsson2013 18
Paraclostridium bifermentans Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Taylor1985, Benno1986, Benno1989, MacFarlane2004, Woodmansey2004, Pfleiderer2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Zou2019, Yang2020, New2022, Vachida2019 15
Paraprevotella clara Bacteroidetes SANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Byrd2020, Chen2020, Hu2019, Jie2017, Vachida2019, Minerbi2019 11
Paraprevotella xylaniphila Bacteroidetes SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Minerbi2019 15
Parasutterella excrementihominis Proteobacteria SANA Non/unknown Pathogen Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, De2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Urban2020, Minerbi2019 20
Parvimonas micra Firmicutes SANA Opportunistic Pathogen Finegold1974, Benno1986, Benno1989, Walker2011, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Forster2019, King2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Jie2017, Zeller2014, Vachida2019 20
Peptostreptococcus anaerobius Firmicutes SANA Opportunistic Pathogen Benno1984, Benno1986, Benno1989, Mangin2004, MacFarlane2004, Wang2005, Nielsen2014, RajilicStojanovic2014, Salonen2014, Lagier2016, Almeida2019, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019 18
Phascolarctobacterium succinatutens Firmicutes SANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a, Minerbi2019, LeChatelier2013, Karlsson2013 17
Phocaeicola barnesiae Bacteroidetes SANA Non/unknown Pathogen Walker2011, Byrd2020, Yang2020, Vachida2019, Urban2020, Li2019b, PerezBrocal2015 7
Phocaeicola sartorii Bacteroidetes SANA Non/unknown Pathogen Byrd2020, Yang2020, Urban2020, Minerbi2019 4
Prevotella bergensis Bacteroidetes SANA Opportunistic Pathogen Lagier2016, Byrd2020, Yang2020, Zeller2014, Urban2020 5
Prevotella bivia Bacteroidetes SANA Opportunistic Pathogen Benno1984, Benno1989, MacFarlane2004, McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Zeller2014, Vachida2019 15
Prevotella corporis Bacteroidetes SANA Opportunistic Pathogen Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Urban2020 6
Prevotella melaninogenica Bacteroidetes ANA Opportunistic Pathogen Wang2005, Bik2006, Zupancic2012, RajilicStojanovic2014, Salonen2014, Lagier2016, King2019, Byrd2020, New2022, Dubinkina2017, Zeller2014, Vachida2019, PerezBrocal2015 13
Prevotella oris Bacteroidetes SANA Opportunistic Pathogen MacFarlane2004, Bik2006, Lagier2016, Byrd2020, New2022, Zeller2014, Vachida2019, Urban2020 8
Prevotella stercorea Bacteroidetes ANA Non/unknown Pathogen Walker2011, Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, De2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Urban2020, Minerbi2019, Li2019b, PerezBrocal2015 18
Proteus mirabilis Proteobacteria FANA Opportunistic Pathogen Finegold1977, Benno1984, MacFarlane2004, Woodmansey2004, McLaughlin2010, Walker2011, Pfleiderer2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Forster2019, Byrd2020, De2020, Yang2020, Jie2017, Zeller2014, Vachida2019 18
Provencibacterium massiliense Firmicutes SANA Non/unknown Pathogen Byrd2020 1
Pseudoflavonifractor capillosus Firmicutes SANA Opportunistic Pathogen Moore1974, Finegold1974, Holdeman1976, Finegold1977, Benno1986, Benno1989, Walker2011, Zupancic2012, Tyakht2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Chen2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Urban2020, Qin2012, LeChatelier2013 22
Romboutsia timonensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Rothia mucilaginosa Actinobacteria FANA Opportunistic Pathogen Wang2005, Bik2006, McLaughlin2010, Walker2011, Dubourg2013, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Li2019b, PerezBrocal2015 17
Ruminococcus albus Firmicutes SANA Non/unknown Pathogen Moore1974, Finegold1974, Holdeman1976, Finegold1977, Walker2011, deGoffau2013, RajilicStojanovic2014, Lagier2016, Rothschild2018, Byrd2020, New2022, Hu2019, Zeller2014, Vachida2019, Qin2012, Moore1995, Karlsson2013 17
Ruminococcus bicirculans Firmicutes SANA Non/unknown Pathogen Lagier2016, Chung2019, Forster2019, King2019, Byrd2020, New2022, Jeong2021, Wang2020a, Urban2020, Minerbi2019 10
Ruminococcus champanellensis Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, King2019, Byrd2020, Yang2020, New2022, Chen2020, Zeller2014, Wang2018, Vachida2019, LeChatelier2013 13
Ruminococcus flavefaciens Firmicutes SANA Non/unknown Pathogen Finegold1974, PerisBondia2011, Walker2011, Zupancic2012, RajilicStojanovic2014, Rothschild2018, Almeida2019, Byrd2020, Hu2019, Zeller2014, Vachida2019, Minerbi2019, Moore1995, Karlsson2013, PerezBrocal2015 15
Ruthenibacterium lactatiformans Firmicutes FANA Non/unknown Pathogen Zou2019, Byrd2020, New2022, Wang2020a, Minerbi2019 5
Schaalia odontolytica Actinobacteria FANA Opportunistic Pathogen Bik2006, McLaughlin2010, Walker2011, Dubourg2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, De2020, New2022, Dubinkina2017, Hu2019, Jeong2021, Zeller2014, Vachida2019 15
Streptococcus equinus Firmicutes FANA Known Pathogen Finegold1977, Benno1984, MacFarlane2004, McLaughlin2010, Tyakht2013, RajilicStojanovic2014, Salonen2014, Cassir2015, Lagier2016, Almeida2019, Forster2019, Byrd2020, De2020, New2022, Dubinkina2017, Jie2017, Zeller2014 17
Streptococcus intermedius Firmicutes FANA Opportunistic Pathogen Holdeman1976, Finegold1977, Benno1984, Benno1986, Benno1989, MacFarlane2004, Woodmansey2004, Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, Byrd2020, Yang2020, New2022, Vachida2019 15
Streptococcus mitis Firmicutes FANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, MacFarlane2004, Wang2005, Bik2006, McLaughlin2010, Walker2011, Dubourg2013, Pfleiderer2013, RajilicStojanovic2014, Salonen2014, Cassir2015, Lagier2016, Almeida2019, Forster2019, King2019, Byrd2020, De2020, New2022, Zeller2014, Vachida2019 22
Streptococcus mutans Firmicutes FANA Opportunistic Pathogen Finegold1977, MacFarlane2004, Woodmansey2004, Hoyles2012, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Almeida2019, Forster2019, Byrd2020, De2020, Yang2020, New2022, Chen2020, Dubinkina2017, Zeller2014, Vachida2019, Karlsson2013 19
Streptococcus sanguinis Firmicutes FANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, Benno1986, Benno1989, Bik2006, McLaughlin2010, Walker2011, Dubourg2013, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 19
Streptococcus vestibularis Firmicutes FANA Rare Opportunist Pandey2012, RajilicStojanovic2014, Lagier2016, Rothschild2018, Byrd2020, De2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Karlsson2013 15
Subdoligranulum variabile Firmicutes SANA Non/unknown Pathogen Nam2008a, McLaughlin2010, Walker2011, Tyakht2013, RajilicStojanovic2014, Salonen2014, Lagier2016, Yang2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Qin2012, Minerbi2019, LeChatelier2013, Karlsson2013 16
Thomasclavelia spiroformis Firmicutes SANA Opportunistic Infection Benno1986, Walker2011, Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Wang2018, Vachida2019, Wang2020a 16
Tidjanibacter inops Bacteroidetes None None Byrd2020 1
Turicibacter sanguinis Firmicutes SANA Opportunistic Pathogen McLaughlin2010, Walker2011, Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Browne2016, Lagier2016, Forster2019, Byrd2020, Yang2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Qin2012, Minerbi2019 20
Veillonella dispar Firmicutes SANA Opportunistic Pathogen Favier2002, DalBello2006, McLaughlin2010, Walker2011, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Zeller2014, Vachida2019, PerezBrocal2015 20