Minor Colonising Gut Bacteria

★ There are 275 'minor colonising' bacteria.

Bacteria Phylum O2 Tol Pathogenicity Studies Num Studies
Abiotrophia defectiva Firmicutes FANA Opportunistic Pathogen RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020, De2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019, Qin2012 11
Acetivibrio ethanolgignens Firmicutes SANA Possible Pathogen Byrd2020 1
Actinobaculum massiliense Actinobacteria FANA Opportunistic Pathogen Lagier2016 1
Actinomyces graevenitzii Actinobacteria FANA Opportunistic Infection RajilicStojanovic2014, Lagier2016, Almeida2019, Byrd2020, De2020, Hu2019, Vachida2019 7
Actinomyces naeslundii Actinobacteria FANA Opportunistic Pathogen Finegold1977, Dubourg2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Forster2019, Byrd2020, Yang2020, New2022, Vachida2019 11
Actinomyces viscosus Actinobacteria FANA Opportunistic Pathogen RajilicStojanovic2014, Byrd2020, New2022, Zeller2014, Vachida2019 5
Acutalibacter timonensis Firmicutes None None Byrd2020 1
Agathobaculum desmolans Firmicutes SANA Non/unknown Pathogen Mangin2004, RajilicStojanovic2014, Byrd2020, Yang2020, Minerbi2019 5
Aggregatibacter aphrophilus Proteobacteria FANA Opportunistic Pathogen Bik2006, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019, Qin2012 10
Aggregatibacter segnis Proteobacteria FANA Opportunistic Infection Lagier2016, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Li2019b, PerezBrocal2015 11
Allisonella histaminiformans Firmicutes FANA Opportunistic Pathogen McLaughlin2010, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, De2020, Minerbi2019 7
Alloprevotella tannerae Bacteroidetes ANA Opportunistic Pathogen MacFarlane2004, Woodmansey2004, Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, Byrd2020, De2020, Zeller2014, Vachida2019, Li2019b 11
Alloscardovia omnicolens Actinobacteria FANA Opportunistic Infection Lagier2016, Almeida2019, Forster2019, Byrd2020, Hu2019, Vachida2019 6
Amedibacillus dolichus Firmicutes SANA Non/unknown Pathogen Woodmansey2004, Yang2020, Dubinkina2017, Hu2019, Jeong2021, Zeller2014, Vachida2019, Wang2020a, PerezBrocal2015 9
Anaerococcus prevotii Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1989, MacFarlane2004, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, King2019, De2020, Yang2020, New2022, Zeller2014 13
Anaerococcus vaginalis Firmicutes SANA Opportunistic Pathogen Mangin2004, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019 11
Anaerofustis stercorihominis Firmicutes SANA Non/unknown Pathogen Zupancic2012, Tyakht2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Hu2019, Zeller2014, Vachida2019, Qin2012 12
Anaeroglobus geminatus Firmicutes SANA Opportunistic Pathogen Lagier2016, Chung2019, Byrd2020, Jeong2021, Vachida2019 5
Atopobium minutum Actinobacteria SANA Opportunistic Pathogen Moore1974, Finegold1974, Finegold1977, RajilicStojanovic2014, Lagier2016, Byrd2020, Vachida2019 7
Bacillus cereus Firmicutes FANA Known Pathogen Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Yang2020, New2022, Zeller2014 9
Bacillus licheniformis Firmicutes FANA Opportunistic Pathogen Frank2007, Hoyles2012, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Zeller2014, Vachida2019 10
Bacillus subtilis Firmicutes AER Rare Opportunist Benno1984, Benno1986, Benno1989, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Zeller2014, Vachida2019 10
Bacteroides ilei Bacteroidetes ANA Non/unknown Pathogen Byrd2020 1
Bacteroides ndongoniae Bacteroidetes ANA Non/unknown Pathogen Byrd2020 1
Bacteroides neonati Bacteroidetes SANA Non/unknown Pathogen Cassir2015, Lagier2016, Byrd2020, Urban2020 4
Bacteroides pyogenes Bacteroidetes SANA Rare Opportunist MacFarlane2004, Woodmansey2004, RajilicStojanovic2014, Lagier2016, Byrd2020, Urban2020 6
Bacteroides togonis Bacteroidetes SANA Non/unknown Pathogen Byrd2020 1
Bariatricus massiliensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Bifidobacterium pseudolongum Actinobacteria ANA Non/unknown Pathogen Moore1974, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, New2022, Vachida2019, Li2019b 8
Bifidobacterium ruminantium Actinobacteria ANA Non/unknown Pathogen RajilicStojanovic2014, Byrd2020 2
Bifidobacterium scardovii Actinobacteria ANA Opportunistic Infection RajilicStojanovic2014, Lagier2016, Byrd2020, New2022 4
Blautia coccoides Firmicutes SANA Non/unknown Pathogen Benno1984, Benno1986, McLaughlin2010, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020 8
Blautia luti Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Cassir2015, Lagier2016, Zou2019, Forster2019, Yang2020, Minerbi2019 7
Blautia stercoris Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, De2020, Yang2020, Jeong2021, Minerbi2019 7
Butyricicoccus pullicaecorum Firmicutes ANA Non/unknown Pathogen RajilicStojanovic2014, Cassir2015, Lagier2016, Forster2019, Byrd2020, Hu2019, Vachida2019, PerezBrocal2015 8
Butyricimonas synergistica Bacteroidetes SANA Non/unknown Pathogen RajilicStojanovic2014, Byrd2020, Hu2019, Jie2017, Vachida2019 5
Butyrivibrio fibrisolvens Firmicutes SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Zeller2014, Qin2012 7
Campylobacter concisus Proteobacteria Micr Opportunistic Pathogen Bik2006, Walker2011, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, De2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 12
Campylobacter gracilis Proteobacteria Micr Possible Pathogen RajilicStojanovic2014, Lagier2016, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 7
Campylobacter hominis Proteobacteria SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, King2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019 10
Campylobacter ureolyticus Proteobacteria ANA Known Pathogen Benno1986, Benno1989, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, New2022, Vachida2019, PerezBrocal2015 9
Christensenella hongkongensis Firmicutes SANA Opportunistic Pathogen Walker2011, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, Jeong2021 6
Christensenella minuta Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Jeong2021 5
Christensenella timonensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Citrobacter farmeri Proteobacteria FANA Possible Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020 3
Citrobacter freundii Proteobacteria AER Opportunistic Pathogen Finegold1977, Benno1984, Benno1986, Benno1989, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, Almeida2019, Forster2019, King2019, Byrd2020, New2022, Chen2020, Dubinkina2017, Hu2019, Jie2017, Vachida2019, Wang2020a 19
Citrobacter koseri Proteobacteria FANA Opportunistic Pathogen Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 8
Cloacibacillus evryensis Synergistetes SANA Possible Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, Jie2017, Minerbi2019 7
Clostridium baratii Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, Woodmansey2004, Pfleiderer2013, RajilicStojanovic2014, Browne2016, Lagier2016, Byrd2020, New2022 10
Clostridium beijerinckii Firmicutes SANA Opportunistic Pathogen Finegold1977, Benno1984, Benno1986, Benno1989, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Zeller2014 9
Clostridium celatum Firmicutes SANA Non/unknown Pathogen Benno1986, RajilicStojanovic2014, Lagier2016, Byrd2020, Chen2020, Dubinkina2017, Hu2019, Vachida2019 8
Clostridium cochlearium Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, Taylor1985, Benno1986, Benno1989, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022 10
Clostridium disporicum Firmicutes SANA Non/unknown Pathogen Mangin2004, McLaughlin2010, Walker2011, Aujoulat2014, RajilicStojanovic2014, Browne2016, Lagier2016, Byrd2020, Yang2020 9
Clostridium hylemonae Firmicutes SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, New2022, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, Qin2012 10
Clostridium neonatale Firmicutes SANA Rare Opportunist Favier2002, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020, Li2019b 7
Clostridium putrefaciens Firmicutes ANA Opportunistic Infection Finegold1974, Finegold1977, Benno1984, Taylor1985, Benno1989, RajilicStojanovic2014, Lagier2016 7
Clostridium sartagoforme Firmicutes SANA Non/unknown Pathogen Finegold1974, Finegold1977, Benno1984, Benno1986, Benno1989, RajilicStojanovic2014, Lagier2016, Byrd2020 8
Clostridium saudiense Firmicutes SANA Rare Opportunist Chung2016, Lagier2016, Byrd2020, Minerbi2019 4
Clostridium sporogenes Firmicutes SANA Opportunistic Pathogen Taylor1985, Woodmansey2004, Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Almeida2019, Jeong2021, Wang2020a 9
Clostridium sporosphaeroides Firmicutes SANA Non/unknown Pathogen Moore1974, Finegold1974, Benno1984, Woodmansey2004, PerisBondia2011, RajilicStojanovic2014, Lagier2016, Byrd2020 8
Collinsella bouchesdurhonensis Actinobacteria SANA Non/unknown Pathogen Byrd2020, De2020, Minerbi2019 3
Collinsella stercoris Actinobacteria SANA Non/unknown Pathogen Zupancic2012, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Dubinkina2017, Zeller2014, Vachida2019, Minerbi2019, Li2019b, PerezBrocal2015 13
Collinsella tanakaei Actinobacteria SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Dubinkina2017, Hu2019, Jie2017, Vachida2019, Qin2012, Minerbi2019 11
Corynebacterium durum Actinobacteria FANA Opportunistic Pathogen McLaughlin2010, RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020, De2020, Jeong2021, Vachida2019, Li2019b, PerezBrocal2015 10
Corynebacterium kroppenstedtii Actinobacteria FANA Opportunistic Pathogen RajilicStojanovic2014, Lagier2016, De2020, Yang2020, Zeller2014, Vachida2019, PerezBrocal2015 7
Cronobacter sakazakii Proteobacteria FANA Opportunistic Pathogen McLaughlin2010, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Hu2019, Zeller2014, Vachida2019 8
Cryptobacterium curtum Actinobacteria SANA Opportunistic Pathogen Bik2006, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Zeller2014, Vachida2019 7
Cutibacterium granulosum Actinobacteria ANA Opportunistic Pathogen McLaughlin2010, Dubourg2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Yang2020, PerezBrocal2015 7
Desulfitobacterium hafniense Firmicutes SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, New2022, Zeller2014, Qin2012 8
Desulfovibrio desulfuricans Proteobacteria SANA Rare Opportunist RajilicStojanovic2014, Lagier2016, Rothschild2018, Byrd2020, New2022, Chen2020, Hu2019, Zeller2014, Vachida2019 9
Desulfovibrio fairfieldensis Proteobacteria SANA Rare Opportunist RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, New2022, Jeong2021, Wang2020a, Minerbi2019 8
Dialister pneumosintes Firmicutes SANA Opportunistic Pathogen Finegold1974, McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022 7
Dialister succinatiphilus Firmicutes SANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, De2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Vachida2019, Minerbi2019 14
Dielma fastidiosa Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Jeong2021 6
Dorea faecis Firmicutes None None Byrd2020 1
Duodenibacillus massiliensis Proteobacteria ANA Non/unknown Pathogen Byrd2020, De2020, Minerbi2019 3
Edwardsiella tarda Proteobacteria FANA Known Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Zeller2014, Vachida2019 7
Eggerthia catenaformis Firmicutes SANA Opportunistic Infection Finegold1977, Benno1989, Woodmansey2004, Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, Byrd2020, De2020, Vachida2019 10
Emergencia timonensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Enorma massiliensis Actinobacteria SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Chen2020, Hu2019, Vachida2019 7
Enterobacter asburiae Proteobacteria FANA Possible Pathogen Favier2002, McLaughlin2010, RajilicStojanovic2014, Cassir2015, Lagier2016, Forster2019, Byrd2020, Byrd2020, Yang2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 13
Enterobacter cancerogenus Proteobacteria FANA Opportunistic Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Dubinkina2017, Zeller2014 7
Enterobacter himalayensis Proteobacteria None None Byrd2020 1
Enterobacter hormaechei subsp. hormaechei Proteobacteria FANA Known Pathogen McLaughlin2010, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, De2020, New2022, Wang2020a 9
Enterocloster aldenensis Firmicutes SANA Opportunistic Pathogen McLaughlin2010, Walker2011, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Yang2020, Jeong2021 8
Enterocloster lavalensis Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Yang2020 5
Enterococcus avium Firmicutes FANA Opportunistic Pathogen Benno1984, Favier2002, Woodmansey2004, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, New2022, Hu2019, Vachida2019 11
Enterococcus hirae Firmicutes FANA Known Pathogen Woodmansey2004, Bik2006, RajilicStojanovic2014, Lagier2016, King2019, Byrd2020, Vachida2019 7
Erysipelatoclostridium saccharogumia Firmicutes None None Byrd2020 1
Erysipelatoclostridium spiroforme Firmicutes None None Byrd2020 1
Escherichia albertii Proteobacteria FANA Opportunistic Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, New2022, Dubinkina2017, Zeller2014 7
Escherichia fergusonii Proteobacteria FANA Known Pathogen Zupancic2012, RajilicStojanovic2014, Lagier2016, Zou2019, Almeida2019, Byrd2020, New2022, Dubinkina2017, Hu2019 9
Eubacterium callanderi Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020, New2022 4
Eubacterium cellulosolvens Firmicutes SANA Non/unknown Pathogen Finegold1977, Zupancic2012, RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Zeller2014, Qin2012 8
Eubacterium coprostanoligenes Firmicutes ANA Non/unknown Pathogen Byrd2020, De2020, New2022, Minerbi2019 4
Eubacterium tenue Firmicutes SANA Opportunistic Pathogen Finegold1974, Holdeman1976, Finegold1977, Nam2008a, Pfleiderer2013, RajilicStojanovic2014, Lagier2016 7
Ezakiella coagulans Bacteroidetes SANA Opportunistic Pathogen Finegold1974, Holdeman1976, Finegold1977, Woodmansey2004, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020 8
Faecalicatena contorta Firmicutes SANA Causes Illness Finegold1974, Finegold1977, Taylor1985, Benno1989, Browne2016, Zou2019, Byrd2020, Yang2020 8
Faecalicatena fissicatena Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Faecalicatena glycyrrhizinilyticum Firmicutes None None Byrd2020, Jeong2021 2
Faecalicatena orotica Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, Benno1989, Pfleiderer2013, Lagier2016, Zou2019, Byrd2020 8
Faecalicoccus pleomorphus Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Minerbi2019 5
Fannyhessea vaginae Actinobacteria FANA Opportunistic Pathogen Lagier2016, Almeida2019, Byrd2020, New2022, Hu2019, Zeller2014, Vachida2019 7
Fenollaria massiliensis Firmicutes SANA Non/unknown Pathogen Byrd2020 1
Filifactor alocis Firmicutes SANA Opportunistic Pathogen Woodmansey2004, Bik2006, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, New2022, Zeller2014, Vachida2019 9
Fusobacterium gonidiaformans Fusobacteria SANA Opportunistic Pathogen Finegold1974, Benno1986, McLaughlin2010, Tyakht2013, Nielsen2014, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 14
Fusobacterium necrophorum Fusobacteria SANA Known Pathogen Finegold1974, Benno1984, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, New2022, Vachida2019 8
Fusobacterium nucleatum Fusobacteria SANA Opportunistic Infection Benno1986, Bik2006, Walker2011, Nielsen2014, RajilicStojanovic2014, Lagier2016, Almeida2019, Chung2019, Forster2019, Byrd2020, De2020, New2022, Urban2020 13
Fusobacterium nucleatum subsp. nucleatum Fusobacteria SANA Opportunistic Infection Benno1986, Tyakht2013, Yang2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019, Wang2020a 8
Fusobacterium periodonticum Fusobacteria SANA Opportunistic Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Hu2019, Zeller2014, Vachida2019 7
Fusobacterium russii Fusobacteria SANA Opportunistic Pathogen Moore1974, Benno1986, Finegold1974, Benno1989, Woodmansey2004, RajilicStojanovic2014, Lagier2016, De2020 8
Gabonibacter massiliensis Bacteroidetes SANA Opportunistic Infection Byrd2020 1
Gardnerella vaginalis Actinobacteria FANA Opportunistic Pathogen Lagier2016, King2019, New2022, Hu2019, Jeong2021, Zeller2014, Vachida2019 7
Gemella haemolysans Firmicutes FANA Opportunistic Pathogen Wang2005, Bik2006, McLaughlin2010, Walker2011, RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Byrd2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 14
Gemella morbillorum Firmicutes FANA Opportunistic Pathogen Benno1986, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Yang2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019 12
Gemella sanguinis Firmicutes FANA Opportunistic Pathogen McLaughlin2010, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 10
Gordonibacter urolithinfaciens Actinobacteria SANA Non/unknown Pathogen Lagier2016, Byrd2020, New2022, Jeong2021 4
Granulicatella adiacens Firmicutes FANA Opportunistic Pathogen McLaughlin2010, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019 9
Granulicatella elegans Firmicutes FANA Opportunistic Pathogen Bik2006, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Hu2019, Zeller2014, Vachida2019 9
Haemophilus haemolyticus Proteobacteria FANA Opportunistic Infection RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, New2022, Hu2019, Zeller2014, Vachida2019 8
Haemophilus influenzae Proteobacteria FANA Known Pathogen Bik2006, RajilicStojanovic2014, Lagier2016, Almeida2019, Byrd2020, De2020, New2022, Zeller2014, Vachida2019, PerezBrocal2015 10
Haemophilus parahaemolyticus Proteobacteria FANA Known Pathogen Byrd2020, New2022, Vachida2019 3
Haemophilus pittmaniae Proteobacteria FANA Opportunistic Pathogen Lagier2016, Byrd2020, De2020, Yang2020, New2022, Zeller2014, Vachida2019 7
Haemophilus sputorum Proteobacteria FANA Opportunistic Infection RajilicStojanovic2014, Byrd2020, De2020, Yang2020, Hu2019, Vachida2019 6
Hafnia alvei Proteobacteria FANA Opportunistic Pathogen Finegold1977, McLaughlin2010, Walker2011, RajilicStojanovic2014, Cassir2015, Lagier2016, Forster2019, Byrd2020, Vachida2019 9
Helicobacter pullorum Proteobacteria Micr Opportunistic Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Hu2019, Zeller2014, Vachida2019 8
Holdemania massiliensis Firmicutes SANA Non/unknown Pathogen Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Jeong2021, Vachida2019 7
Hungatella effluvii Firmicutes SANA Non/unknown Pathogen Zou2019, Byrd2020, Yang2020 3
Klebsiella grimontii Proteobacteria FANA Opportunistic Pathogen Byrd2020, New2022 2
Klebsiella michiganensis Proteobacteria FANA Opportunistic Pathogen King2019, Byrd2020, New2022, Wang2020a 4
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria FANA Opportunistic Pathogen Zou2019, New2022 2
Klebsiella quasivariicola Proteobacteria None Opportunistic Pathogen Byrd2020 1
Klebsiella variicola Proteobacteria FANA Known Pathogen Nielsen2014, Lagier2016, King2019, Byrd2020, New2022, Jie2017, Vachida2019, Wang2020a, Minerbi2019 9
Kluyvera ascorbata Proteobacteria FANA Opportunistic Pathogen Woodmansey2004, McLaughlin2010, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020 6
Kosakonia cowanii Proteobacteria FANA Opportunistic Infection Lagier2016, Byrd2020 2
Lachnoclostridium edouardi Firmicutes SANA Non/unknown Pathogen Byrd2020, Minerbi2019 2
Lachnoclostridium phytofermentans Firmicutes SANA Non/unknown Pathogen King2019, Byrd2020, New2022, Zeller2014, Qin2012 5
Lachnospira pectinoschiza Firmicutes SANA Non/unknown Pathogen McLaughlin2010, Walker2011, Zupancic2012, RajilicStojanovic2014, Salonen2014, Browne2016, Forster2019, Byrd2020, Minerbi2019 9
Lacrimispora indolis Firmicutes ANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1986, Benno1989, Mangin2004, Woodmansey2004, Walker2011, RajilicStojanovic2014, Lagier2016 9
Lacrimispora sphenoides Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1984, Taylor1985, Benno1989, Woodmansey2004, Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, New2022 11
Lacticaseibacillus paracasei Firmicutes FANA Rare Opportunist Benno1984, Heilig2002, MacFarlane2004, Woodmansey2004, Pfleiderer2013, Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, King2019, Byrd2020, New2022, Chen2020, Hu2019, Wang2020a 15
Lactobacillus amylovorus Firmicutes FANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Zou2019, Almeida2019, Byrd2020, Jie2017, Zeller2014, Vachida2019, Wang2020a 9
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes FANA Rare Opportunist Heilig2002, MacFarlane2004, Bik2006, DalBello2006, Zupancic2012, RajilicStojanovic2014, Lagier2016, Rothschild2018, Almeida2019, Forster2019, Byrd2020, Yang2020, New2022, Zeller2014, Vachida2019, PerezBrocal2015 16
Lactobacillus johnsonii Firmicutes FANA Rare Opportunist Tyakht2013, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, Byrd2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 10
Lactobacillus kalixensis Firmicutes FANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020 3
Lactobacillus ultunensis Firmicutes FANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Dubinkina2017, Zeller2014 7
Lactococcus garvieae Firmicutes FANA Opportunistic Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Almeida2019, Byrd2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019, Wang2020a, Li2019b 12
Lactococcus raffinolactis Firmicutes FANA Non/unknown Pathogen Dubourg2013, RajilicStojanovic2014, Byrd2020, Byrd2020, New2022 5
Lactonifactor longoviformis Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Yang2020, Jeong2021 6
Lancefieldella parvula Actinobacteria SANA Opportunistic Infection Finegold1974, Benno1986, Benno1989, Bik2006, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, New2022, Hu2019, Jie2017, Zeller2014, Vachida2019 14
Lancefieldella rimae Actinobacteria SANA Opportunistic Pathogen RajilicStojanovic2014, Byrd2020, Hu2019, Zeller2014, Vachida2019 5
Latilactobacillus curvatus Firmicutes FANA Non/unknown Pathogen Woodmansey2004, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, Vachida2019 7
Latilactobacillus sakei Firmicutes Micr Non/unknown Pathogen Heilig2002, DalBello2006, Tyakht2013, RajilicStojanovic2014, Lagier2016, Byrd2020, Dubinkina2017, Jeong2021, Zeller2014, Vachida2019 10
Lautropia mirabilis Proteobacteria FANA Non/unknown Pathogen Bik2006, RajilicStojanovic2014, Byrd2020, De2020, New2022, Zeller2014, Vachida2019 7
Lentilactobacillus buchneri subsp. buchneri Firmicutes FANA Non/unknown Pathogen Benno1986, Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Lagier2016, Hu2019, Zeller2014 7
Leuconostoc citreum Firmicutes FANA Rare Opportunist Almeida2019, King2019, Byrd2020, Yang2020, Hu2019, Jeong2021, Zeller2014, Vachida2019 8
Leuconostoc lactis Firmicutes FANA Rare Opportunist Heilig2002, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Hu2019, Zeller2014, Vachida2019 8
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes FANA Rare Opportunist Heilig2002, DalBello2006, Tyakht2013, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, Byrd2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 12
Levilactobacillus brevis Firmicutes FANA Rare Opportunist Finegold1977, Benno1989, Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Hu2019, Zeller2014, Vachida2019, PerezBrocal2015 12
Ligilactobacillus animalis Firmicutes FANA Non/unknown Pathogen MacFarlane2004, Woodmansey2004, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Zeller2014 7
Limosilactobacillus oris Firmicutes FANA Non/unknown Pathogen MacFarlane2004, Woodmansey2004, RajilicStojanovic2014, Lagier2016, Byrd2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019 9
Limosilactobacillus reuteri Firmicutes FANA Rare Opportunist Benno1986, Benno1989, Woodmansey2004, Tyakht2013, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, Byrd2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 13
Loigolactobacillus coryniformis Firmicutes FANA Non/unknown Pathogen Woodmansey2004, RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020, De2020, Zeller2014 7
Massiliimalia timonensis Firmicutes Micr Non/unknown Pathogen 0
Mediterraneibacter faecis Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Yang2020, Jeong2021, Minerbi2019 7
Mediterraneibacter glycyrrhizinilyticus Firmicutes SANA Non/unknown Pathogen McLaughlin2010, Walker2011, Nielsen2014, RajilicStojanovic2014, Lagier2016, Zou2019, Yang2020 7
Megamonas funiformis Firmicutes SANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Forster2019, Byrd2020, New2022, Hu2019, Jie2017, Vachida2019, Minerbi2019 12
Megasphaera micronuciformis Firmicutes SANA Opportunistic Infection Lagier2016, Zou2019, De2020, Hu2019, Jeong2021, Jie2017, Zeller2014, Vachida2019 8
Methanosphaera stadtmanae Euryarchaeota SANA Non/unknown Pathogen Nam2008a, Tyakht2013, Lagier2016, Rothschild2018, De2020, Dubinkina2017, Jie2017, Zeller2014, Vachida2019, Karlsson2013 10
Micrococcus luteus Actinobacteria AER Non/unknown Pathogen Finegold1974, Taylor1985, MacFarlane2004, McLaughlin2010, Hoyles2012, Dubourg2013, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Forster2019, Zeller2014, PerezBrocal2015 12
Mitsuokella jalaludinii Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Browne2016, Lagier2016, Forster2019, Byrd2020, Minerbi2019 6
Monoglobus pectinilyticus Firmicutes ANA Non/unknown Pathogen Byrd2020, New2022, Jeong2021, Wang2020a 4
Morganella morganii Proteobacteria FANA Opportunistic Pathogen Finegold1974, Woodmansey2004, RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Vachida2019, Li2019b, PerezBrocal2015 9
Muribaculum intestinale Bacteroidetes SANA Non/unknown Pathogen Byrd2020, New2022 2
Negativibacillus massiliensis Firmicutes SANA Non/unknown Pathogen Byrd2020, Minerbi2019 2
Neisseria cinerea Proteobacteria AER Opportunistic Pathogen McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, Zeller2014, PerezBrocal2015 7
Neisseria elongata Proteobacteria AER Opportunistic Pathogen Bik2006, RajilicStojanovic2014, Lagier2016, De2020, Yang2020, New2022, Zeller2014, Vachida2019 8
Neisseria flavescens Proteobacteria AER Opportunistic Pathogen Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, New2022, Zeller2014, Vachida2019 8
Odoribacter laneus Bacteroidetes SANA Non/unknown Pathogen Nielsen2014, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Dubinkina2017, Jie2017, Vachida2019, Qin2012, Minerbi2019, Karlsson2013 12
Odoribacter massiliensis Bacteroidetes None None Byrd2020 1
Oribacterium sinus Firmicutes SANA Opportunistic Infection Walker2011, RajilicStojanovic2014, Byrd2020, Yang2020, Hu2019, Jie2017, Zeller2014, Vachida2019 8
Oscillibacter valericigenes Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Chung2019, King2019, Byrd2020, New2022, Zeller2014, Qin2012, Karlsson2013 8
Paeniclostridium sordellii Firmicutes SANA Opportunistic Pathogen Finegold1974, Benno1989, Woodmansey2004, McLaughlin2010, Zupancic2012, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, King2019, Byrd2020, New2022, Hu2019, Vachida2019 14
Pantoea agglomerans Proteobacteria FANA Possible Pathogen Taylor1985, Dubourg2013, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Vachida2019 8
Parabacteroides bouchesdurhonensis Bacteroidetes ANA Non/unknown Pathogen Byrd2020 1
Parabacteroides chinchillae Bacteroidetes ANA Non/unknown Pathogen Byrd2020 1
Parabacteroides gordonii Bacteroidetes SANA Possible Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Minerbi2019, Li2019b, PerezBrocal2015 9
Parabacteroides timonensis Bacteroidetes SANA Non/unknown Pathogen Byrd2020 1
Pauljensenia bouchesdurhonensis Actinobacteria AER None Byrd2020 1
Pauljensenia keddieii Actinobacteria AER None Byrd2020 1
Pediococcus pentosaceus Firmicutes FANA Rare Opportunist Mangin2004, DalBello2006, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Zeller2014 7
Peptacetobacter hiranonis Firmicutes SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Zou2019, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 9
Peptoniphilus asaccharolyticus Firmicutes SANA Opportunistic Pathogen Moore1974, Finegold1974, Finegold1977, Benno1986, Benno1989, RajilicStojanovic2014, Lagier2016, Byrd2020 8
Peptoniphilus harei Firmicutes SANA Opportunistic Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, New2022, Jie2017, Zeller2014, Vachida2019 9
Peptoniphilus lacrimalis Firmicutes SANA Opportunistic Pathogen Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, Dubinkina2017, Hu2019, Zeller2014, Vachida2019 8
Peptostreptococcus stomatis Firmicutes SANA Opportunistic Pathogen McLaughlin2010, Walker2011, RajilicStojanovic2014, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019 10
Phascolarctobacterium faecium Firmicutes SANA Non/unknown Pathogen Mangin2004, McLaughlin2010, Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Yang2020, New2022, Jeong2021, Wang2020a, Minerbi2019 12
Phocaeicola massiliensis Bacteroidetes SANA Opportunistic Pathogen Walker2011, Zupancic2012, RajilicStojanovic2014, Lagier2016, Rothschild2018, Zou2019, Byrd2020, Hu2019, Jie2017, Vachida2019, Urban2020, Minerbi2019 12
Phocaeicola salanitronis Bacteroidetes SANA Non/unknown Pathogen Byrd2020, New2022, Jie2017, Zeller2014, Vachida2019, Urban2020 6
Phocea massiliensis Firmicutes SANA Non/unknown Pathogen Lagier2016, Byrd2020, Minerbi2019 3
Porphyromonas asaccharolytica Bacteroidetes SANA Known Pathogen RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, King2019, Byrd2020, New2022, Chen2020, Hu2019, Jie2017, Zeller2014, Vachida2019 12
Porphyromonas endodontalis Bacteroidetes SANA Opportunistic Pathogen Walker2011, RajilicStojanovic2014, Byrd2020, Yang2020, Zeller2014, Vachida2019, PerezBrocal2015 7
Porphyromonas somerae Bacteroidetes SANA Rare Opportunist Walker2011, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, Hu2019, Jie2017, Vachida2019 8
Porphyromonas uenonis Bacteroidetes SANA Opportunistic Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Dubinkina2017, Zeller2014, Vachida2019 7
Prevotella brevis Bacteroidetes ANA Opportunistic Pathogen Finegold1974, Holdeman1976, Finegold1977, RajilicStojanovic2014, Lagier2016, Byrd2020, Urban2020 7
Prevotella buccae Bacteroidetes ANA Opportunistic Pathogen Benno1986, Benno1989, McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Almeida2019, Chung2019, Byrd2020, Dubinkina2017, Zeller2014, Vachida2019, Wang2020a, Minerbi2019 14
Prevotella buccalis Bacteroidetes SANA Rare Opportunist Lagier2016, Byrd2020, Yang2020, Hu2019, Zeller2014, Vachida2019, Urban2020 7
Prevotella dentalis Bacteroidetes SANA Opportunistic Pathogen Forster2019, King2019, Yang2020, New2022, Zeller2014, Vachida2019, Urban2020 7
Prevotella denticola Bacteroidetes ANA Opportunistic Pathogen Bik2006, Walker2011, RajilicStojanovic2014, Chung2016, Lagier2016, Almeida2019, King2019, Byrd2020, New2022, Zeller2014, Vachida2019 11
Prevotella disiens Bacteroidetes ANA Opportunistic Pathogen McLaughlin2010, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Jeong2021, Jie2017, Zeller2014, Vachida2019, Urban2020 13
Prevotella intermedia Bacteroidetes ANA Opportunistic Pathogen Benno1984, Benno1989, Bik2006, Walker2011, RajilicStojanovic2014, Lagier2016, King2019, Byrd2020, De2020, New2022, Vachida2019, Urban2020 12
Prevotella lascolaii Bacteroidetes SANA Possible Pathogen Byrd2020 1
Prevotella multisaccharivorax Bacteroidetes SANA Opportunistic Pathogen Forster2019, Byrd2020, Zeller2014, Vachida2019, Urban2020 5
Prevotella nigrescens Bacteroidetes SANA Opportunistic Pathogen MacFarlane2004, Bik2006, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Zeller2014, Vachida2019, Urban2020 9
Prevotella oralis Bacteroidetes ANA Known Pathogen Finegold1974, Benno1984, Benno1986, Benno1989, Walker2011, Bik2006, RajilicStojanovic2014, Salonen2014, Lagier2016, Forster2019, Byrd2020, Zeller2014, Vachida2019, Urban2020 14
Prevotella ruminicola Bacteroidetes SANA Opportunistic Pathogen Finegold1974, Holdeman1976, Finegold1977, Woodmansey2004, Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, King2019, Byrd2020, New2022, Zeller2014, Urban2020 13
Prevotella timonensis Bacteroidetes ANA Opportunistic Pathogen RajilicStojanovic2014, Byrd2020, Yang2020, Chen2020, Hu2019, Zeller2014, Vachida2019 7
Prevotella veroralis Bacteroidetes ANA Non/unknown Pathogen Benno1986, Wang2005, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Vachida2019 7
Prevotellamassilia timonensis Bacteroidetes SANA Non/unknown Pathogen Lagier2016, Byrd2020, De2020, Minerbi2019 4
Providencia alcalifaciens Proteobacteria FANA Opportunistic Pathogen Finegold1974, Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Zeller2014, Vachida2019 7
Providencia rettgeri Proteobacteria FANA Opportunistic Pathogen Finegold1974, Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Vachida2019 7
Pygmaiobacter massiliensis Firmicutes None Non/unknown Pathogen Byrd2020 1
Pyramidobacter piscolens Synergistetes SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020, Yang2020, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a, Li2019b, PerezBrocal2015 11
Raoultella ornithinolytica Proteobacteria FANA Possible Pathogen Zupancic2012, Lagier2016, King2019, Byrd2020, Yang2020, New2022, Vachida2019 7
Romboutsia lituseburensis Firmicutes ANA Non/unknown Pathogen McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020 7
Rothia aeria Actinobacteria AER Opportunistic Pathogen Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, New2022, Hu2019, Vachida2019, Li2019b, PerezBrocal2015 10
Rothia dentocariosa Actinobacteria AER Opportunistic Pathogen Taylor1985, Bik2006, Dubourg2013, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, New2022, Zeller2014, Vachida2019, Li2019b, PerezBrocal2015 13
Rubneribacter badeniensis Actinobacteria SANA Non/unknown Pathogen Byrd2020 1
Ruminococcus gauvreauii Firmicutes SANA Non/unknown Pathogen PerisBondia2011, Walker2011, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020 6
Sarcina ventriculi Firmicutes ANA Rare Opportunist Finegold1977, Aujoulat2014, RajilicStojanovic2014, Browne2016, Lagier2016, Forster2019, Byrd2020, Yang2020 8
Scardovia wiggsiae Actinobacteria ANA Opportunistic Infection Byrd2020, Hu2019, Vachida2019 3
Selenomonas ruminantium Firmicutes SANA Non/unknown Pathogen Benno1986, Zupancic2012, RajilicStojanovic2014, Lagier2016, Almeida2019, Byrd2020, New2022 7
Sellimonas intestinalis Firmicutes SANA Non/unknown Pathogen Forster2019, Byrd2020, Yang2020, Minerbi2019 4
Senegalimassilia anaerobia Actinobacteria ANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Minerbi2019 7
Serratia marcescens Proteobacteria FANA Known Pathogen RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Byrd2020, De2020, New2022, Hu2019, Vachida2019 9
Shigella flexneri Proteobacteria FANA Known Pathogen McLaughlin2010, Pandey2012, Zupancic2012, RajilicStojanovic2014, Lagier2016, Zou2019, New2022, Hu2019, Vachida2019 9
Shigella sonnei Proteobacteria FANA Known Pathogen McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Forster2019, De2020, New2022, Hu2019, Vachida2019 9
Slackia piriformis Actinobacteria SANA Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, Chen2020, Hu2019, Vachida2019 8
Solobacterium moorei Firmicutes SANA Non/unknown Pathogen Walker2011, RajilicStojanovic2014, Salonen2014, Lagier2016, Zou2019, Byrd2020, Yang2020, Chen2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019, PerezBrocal2015 14
Staphylococcus aureus subsp. aureus Firmicutes FANA Known Pathogen Finegold1974, Finegold1977, Benno1984, Benno1989, Woodmansey2004, Pfleiderer2013, RajilicStojanovic2014, Cassir2015, Almeida2019, Byrd2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 14
Staphylococcus haemolyticus Firmicutes FANA Opportunistic Pathogen MacFarlane2004, Woodmansey2004, Pandey2012, Dubourg2013, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, De2020, Zeller2014, PerezBrocal2015 12
Staphylococcus hominis subsp. hominis Firmicutes FANA Opportunistic Pathogen McLaughlin2010, Dubourg2013, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Almeida2019, Byrd2020, Yang2020, Zeller2014 11
Staphylococcus pasteuri Firmicutes FANA Opportunistic Pathogen McLaughlin2010, Walker2011, Dubourg2013, Pfleiderer2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020 8
Staphylococcus warneri Firmicutes FANA Opportunistic Pathogen MacFarlane2004, Woodmansey2004, Dubourg2013, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Cassir2015, Lagier2016, Zou2019, Byrd2020, Zeller2014 11
Stenotrophomonas maltophilia Proteobacteria AER Opportunistic Pathogen McLaughlin2010, Walker2011, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, Yang2020, New2022, Zeller2014, Vachida2019 10
Stomatobaculum longum Firmicutes SANA Rare Opportunist Byrd2020, Yang2020, Hu2019, Vachida2019 4
Streptococcus agalactiae Firmicutes FANA Known Pathogen Finegold1974, RajilicStojanovic2014, Lagier2016, Almeida2019, Forster2019, Byrd2020, De2020, New2022, Dubinkina2017, Zeller2014, Vachida2019 11
Streptococcus australis Firmicutes FANA Rare Opportunist McLaughlin2010, RajilicStojanovic2014, Lagier2016, Rothschild2018, Forster2019, Byrd2020, Yang2020, New2022, Chen2020, Hu2019, Zeller2014, Vachida2019 12
Streptococcus constellatus subsp. constellatus Firmicutes FANA Opportunistic Pathogen Finegold1977, Bik2006, Walker2011, RajilicStojanovic2014, Lagier2016, New2022, Vachida2019 7
Streptococcus cristatus Firmicutes FANA Rare Opportunist Bik2006, McLaughlin2010, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Yang2020, New2022, Dubinkina2017, Hu2019, Zeller2014, Vachida2019 12
Streptococcus gallolyticus subsp. gallolyticus Firmicutes FANA Opportunistic Pathogen RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 9
Streptococcus gordonii Firmicutes FANA Opportunistic Infection Bik2006, McLaughlin2010, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, De2020, Yang2020, New2022, Hu2019, Zeller2014, Vachida2019 14
Streptococcus infantarius Firmicutes FANA Rare Opportunist Tyakht2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Byrd2020, New2022, Hu2019, Zeller2014, Vachida2019, Wang2020a 10
Streptococcus infantarius subsp. infantarius Firmicutes FANA Rare Opportunist Lagier2016, Dubinkina2017, Jie2017 3
Streptococcus infantis Firmicutes FANA Opportunistic Infection Bik2006, Walker2011, RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Hu2019, Jie2017, Zeller2014, Vachida2019, PerezBrocal2015 13
Streptococcus lutetiensis Firmicutes FANA Opportunistic Pathogen Dubourg2013, RajilicStojanovic2014, Cassir2015, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, New2022, Hu2019, Vachida2019, Li2019b, PerezBrocal2015 13
Streptococcus oralis Firmicutes FANA Opportunistic Pathogen Wang2005, Walker2011, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, New2022, Dubinkina2017, Zeller2014 12
Streptococcus pasteurianus Firmicutes FANA Opportunistic Pathogen Zou2019, King2019, Byrd2020, New2022, Hu2019, Jie2017, Vachida2019, Wang2020a 8
Streptococcus pneumoniae Firmicutes FANA Known Pathogen McLaughlin2010, Pfleiderer2013, RajilicStojanovic2014, Lagier2016, Byrd2020, De2020, Yang2020, New2022, Zeller2014 9
Streptococcus pseudopneumoniae Firmicutes FANA Possible Pathogen RajilicStojanovic2014, Lagier2016, Byrd2020, New2022, Hu2019, Zeller2014, Vachida2019 7
Streptococcus pyogenes Firmicutes FANA Known Pathogen Finegold1974, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, New2022, Zeller2014 7
Streptococcus sobrinus Firmicutes FANA Opportunistic Pathogen Lagier2016, Forster2019, Byrd2020, New2022, Vachida2019, Wang2020a, Li2019b 7
Streptococcus timonensis Firmicutes FANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Succinatimonas hippei Proteobacteria SANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Yang2020, Dubinkina2017, Hu2019, Jie2017, Zeller2014, Vachida2019 11
Sutterella parvirubra Proteobacteria Micr Non/unknown Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Forster2019, Byrd2020, Yang2020, Vachida2019 7
Tannerella forsythia Bacteroidetes SANA Opportunistic Pathogen MacFarlane2004, Woodmansey2004, Bik2006, McLaughlin2010, RajilicStojanovic2014, Lagier2016, King2019, Byrd2020, De2020, New2022, Zeller2014, Vachida2019 12
Terrisporobacter glycolicus Firmicutes SANA Opportunistic Pathogen Finegold1974, Finegold1977, Benno1986, Zupancic2012, Pfleiderer2013, Aujoulat2014, RajilicStojanovic2014, Lagier2016, Forster2019, Byrd2020, Vachida2019 11
Thermophilibacter provencensis Actinobacteria SANA Non/unknown Pathogen Lagier2016, Byrd2020 2
Veillonella rogosae Firmicutes SANA Non/unknown Pathogen RajilicStojanovic2014, Byrd2020 2
Veillonella tobetsuensis Firmicutes SANA Non/unknown Pathogen Byrd2020 1
Victivallis vadensis Lentisphaerae SANA Non/unknown Pathogen Walker2011, Zupancic2012, RajilicStojanovic2014, Lagier2016, Jie2017, Zeller2014, Wang2020a, Minerbi2019, LeChatelier2013 9
Weissella cibaria Firmicutes FANA Known Pathogen RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Hu2019, Jie2017, Zeller2014, Vachida2019, Wang2020a 9
Weissella confusa Firmicutes FANA Known Pathogen Bik2006, RajilicStojanovic2014, Lagier2016, Zou2019, Byrd2020, Yang2020, Hu2019, Vachida2019, PerezBrocal2015 9
Weissella paramesenteroides Firmicutes FANA Non/unknown Pathogen Tyakht2013, RajilicStojanovic2014, Lagier2016, Forster2019, Yang2020, Zeller2014, Vachida2019 7
Weissella viridescens Firmicutes FANA Rare Opportunist Lagier2016, Byrd2020, Yang2020 3