All Carbohydrate Fermentation and Oxidation Producing Acid

Monosaccharides
FILTERS
Total 2651
Current 2651
Bacteria Phylum Coloniser Gram Arab LAra DAra Fruc LFuc DFuc Gal Glc Man DLyx Rham Rib Sorb Taga DXyl LXyl
Abiotrophia defectiva Firmicutes Minor + neg neg + + neg neg + + neg neg neg d neg neg
Absiella argi Firmicutes Rare + neg + + neg +
Absiella innocuum Firmicutes Moderate
Absiella tortuosum Firmicutes Rare + neg d(neg) neg + + neg neg neg neg
Acetanaerobacterium elongatum Firmicutes Rare + + + + + neg neg neg neg +
Acetatifactor muris Firmicutes Rare + + neg neg +
Acetitomaculum ruminis Firmicutes Rare +
Acetivibrio cellulolyticus Firmicutes Rare neg neg neg neg neg neg neg neg d(+)
Acetivibrio clariflavus Firmicutes Unlikely vr neg
Acetivibrio ethanolgignens Firmicutes Minor neg neg + + + + neg neg neg
Acetivibrio saccincola Firmicutes Unlikely +
Acetivibrio thermocellus Firmicutes Unlikely neg neg neg neg
Acetoanaerobium sticklandii Firmicutes Rare + w w
Acetobacter pasteurianus Proteobacteria Unlikely neg d
Acetobacterium woodii Firmicutes Rare +
Acetomicrobium hydrogeniformans Synergistetes Unlikely neg
Achromobacter denitrificans Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Achromobacter insuavis Proteobacteria Unlikely neg neg +
Achromobacter spanius Proteobacteria Unlikely neg neg neg neg
Achromobacter xylosoxidans Proteobacteria Rare neg neg neg + neg + + neg +
Acidaminococcus fermentans Firmicutes Widespread neg neg neg neg neg d(w) neg d(w) neg d(w) d(w) neg neg neg
Acidaminococcus intestini Firmicutes Moderate neg neg neg
Acidaminococcus massiliensis Firmicutes Rare neg
Acidaminococcus provencensis Firmicutes Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg + neg neg
Acidaminococcus timonensis Firmicutes Rare neg
Acidipropionibacterium acidipropionici Actinobacteria Rare + + + + neg + + + + + neg neg
Acidipropionibacterium jensenii Actinobacteria Rare + neg neg + neg + + + neg neg neg
Acidisarcina polymorpha Acidobacteria Rare neg
Acidovorax facilis Proteobacteria Rare neg neg neg
Acidovorax sp. strain KKS102 Proteobacteria Rare neg
Acidovorax temperans Proteobacteria Rare neg neg neg neg
Acidovorax wautersii Proteobacteria Rare neg + + + +
Acinetobacter baumannii Proteobacteria Unlikely neg neg + neg
Acinetobacter bereziniae Proteobacteria Unlikely neg d(+)
Acinetobacter calcoaceticus Proteobacteria Rare neg + neg + neg
Acinetobacter guillouiae Proteobacteria Rare neg neg neg neg neg
Acinetobacter haemolyticus Proteobacteria Unlikely neg d
Acinetobacter idrijaensis Proteobacteria Rare
Acinetobacter johnsonii Proteobacteria Rare neg neg neg neg
Acinetobacter junii Proteobacteria Rare neg neg
Acinetobacter lwoffii Proteobacteria Unlikely neg neg d(neg) neg
Acinetobacter parvus Proteobacteria Unlikely neg neg
Acinetobacter pittii Proteobacteria Unlikely neg + + neg
Acinetobacter radioresistens Proteobacteria Rare neg neg
Acinetobacter schindleri Proteobacteria Unlikely neg neg
Acinetobacter septicus Proteobacteria Unlikely neg neg
Acinetobacter towneri Proteobacteria Unlikely neg neg neg neg neg neg
Acinetobacter ursingii Proteobacteria Unlikely neg neg
Acinetobacter variabilis Proteobacteria Unlikely neg neg
Actinobacillus capsulatus Proteobacteria Rare neg d neg + neg neg + + + neg + neg + neg
Actinobacillus minor Proteobacteria Unlikely neg neg + +
Actinobacillus pleuropneumoniae Proteobacteria Rare neg neg neg + w + + neg neg +
Actinobacillus succinogenes Proteobacteria Rare neg + neg + neg neg + + + neg neg + neg neg + neg
Actinobacillus ureae Proteobacteria Non neg + + neg
Actinobaculum massiliense Actinobacteria Minor + + neg + +
Actinomyces bouchesdurhonensis Actinobacteria Unlikely + neg + + neg neg
Actinomyces canis Actinobacteria Non + + neg d neg + neg +
Actinomyces dentalis Actinobacteria Non + neg neg + + + neg neg neg
Actinomyces georgiae Actinobacteria Non + d(neg) + + d(neg) w + +
Actinomyces gerencseriae Actinobacteria Unlikely + neg + + + neg + +
Actinomyces graevenitzii Actinobacteria Minor + neg neg + neg neg + + vr neg vr neg neg
Actinomyces ihuae Actinobacteria Rare + neg neg neg + neg
Actinomyces israelii Actinobacteria Non + vr vr +
Actinomyces johnsonii Actinobacteria Rare + neg d d +
Actinomyces marseillensis Actinobacteria Rare + neg + + + +
Actinomyces massiliensis Actinobacteria Rare + neg neg + neg neg + + w + neg w neg neg + neg
Actinomyces mediterranea Actinobacteria Rare +
Actinomyces minihominis Actinobacteria Rare +
Actinomyces naeslundii Actinobacteria Minor + neg neg + + neg neg neg neg
Actinomyces oris Actinobacteria Rare + neg neg + + neg d(neg) vr neg
Actinomyces pacaensis Actinobacteria Rare +
Actinomyces polynesiensis Actinobacteria Rare + + neg + neg + + + neg + vr neg + neg
Actinomyces provencensis Actinobacteria Rare +
Actinomyces sp. ph3 Actinobacteria Rare +
Actinomyces timonensis Actinobacteria Rare + neg neg + neg neg + + w neg neg + neg neg neg
Actinomyces urogenitalis Actinobacteria Rare + vr + + neg neg +
Actinomyces viscosus Actinobacteria Minor + neg neg + + neg neg neg
Actinosynnema mirum Actinobacteria Non + + + + + + neg +
Actinotignum schaalii Actinobacteria Rare + d + d + neg +
Acutalibacter muris Firmicutes Rare +
Acutalibacter timonensis Firmicutes Minor
Adhaeribacter aquaticus Bacteroidetes Unlikely neg neg
Adlercreutzia caecimuris Actinobacteria Rare +
Adlercreutzia equolifaciens Actinobacteria Moderate +
Adlercreutzia equolifaciens subsp. celatus Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Adlercreutzia hattorii Actinobacteria Rare +
Adlercreutzia mucosicola Actinobacteria Rare +
Adlercreutzia rubneri Actinobacteria Rare + neg
Aeribacillus pallidus Firmicutes Unlikely + + + + + + + neg neg
Aerococcus vaginalis Firmicutes Non + neg neg + neg neg + + + neg neg + neg + neg neg
Aerococcus viridans Firmicutes Rare + neg neg neg + neg neg + + + neg neg d(+) neg neg neg neg
Aeromicrobium massiliense Actinobacteria Rare + neg
Aeromicrobium tamlense Actinobacteria Rare +
Aeromonas allosaccharophila Proteobacteria Rare neg + + + + + neg
Aeromonas bestiarum Proteobacteria Rare neg + + + + d(+) neg
Aeromonas caviae Proteobacteria Unlikely neg + + + + neg neg
Aeromonas dhakensis Proteobacteria Rare neg neg neg neg + neg neg + + + neg neg + neg neg neg neg
Aeromonas encheleia Proteobacteria Unlikely neg neg + d(+) neg
Aeromonas enteropelogenes Proteobacteria Rare neg neg neg + neg
Aeromonas eucrenophila Proteobacteria Non neg + + neg neg
Aeromonas hydrophila Proteobacteria Unlikely neg + d + neg
Aeromonas hydrophila subsp. hydrophila Proteobacteria Unlikely neg + + neg
Aeromonas jandaei Proteobacteria Rare neg neg neg neg + + + + neg + neg
Aeromonas media Proteobacteria Rare neg + + + neg
Aeromonas popoffii Proteobacteria Unlikely neg + + + neg neg
Aeromonas salmonicida Proteobacteria Unlikely neg + d + + + + neg neg
Aeromonas schubertii Proteobacteria Non neg neg + + + neg neg
Aeromonas sobria Proteobacteria Rare neg + neg neg
Aeromonas taiwanensis Proteobacteria Non neg + neg + neg neg + + neg neg neg + neg neg neg neg
Aeromonas tecta Proteobacteria Rare neg neg + d(neg) + neg
Aeromonas trota Proteobacteria Rare neg neg + + neg
Aeromonas veronii Proteobacteria Rare neg neg vr + + + neg neg
Aestuariimicrobium kwangyangense Actinobacteria Rare + + + + + + + +
Afipia birgiae Proteobacteria Unlikely neg neg
Afipia broomeae Proteobacteria Rare neg neg w
Afipia lausannensis Proteobacteria Unlikely neg neg
Africanella massiliensis Firmicutes Rare +
Agathobacter ruminis Firmicutes Rare + + neg + neg neg + + neg neg + neg neg neg d(+) neg
Agathobaculum butyriciproducens Firmicutes Moderate + + + + + +
Agathobaculum desmolans Firmicutes Minor + neg neg neg neg neg neg
Aggregatibacter actinomycetemcomitans Proteobacteria Rare neg neg + neg + d
Aggregatibacter aphrophilus Proteobacteria Minor neg neg neg + + + + neg neg neg neg neg
Aggregatibacter segnis Proteobacteria Minor neg neg neg w w w(+) neg neg neg
Agrilactobacillus composti Firmicutes Unlikely + + + + + + w neg +
Agrobacterium radiobacter Proteobacteria Unlikely neg + + + + + +
Agrobacterium rhizogenes Proteobacteria Unlikely neg + +
Agrobacterium tumefaciens Proteobacteria Unlikely neg
Agrococcus casei Actinobacteria Rare + neg + +
Agrococcus jejuensis Actinobacteria Rare + neg neg neg neg neg neg w neg neg
Agrococcus jenensis Actinobacteria Rare + w + neg neg neg w neg neg
Agrococcus terreus Actinobacteria Unlikely + + + + + +
Akkermansia glycaniphila Verrucomicrobia Rare neg
Akkermansia muciniphila Verrucomicrobia Widespread neg neg + neg neg neg
Alcaligenes faecalis Proteobacteria Rare neg neg neg neg neg
Alcaligenes faecalis subsp. faecalis Proteobacteria Unlikely neg neg neg neg neg
Aliagarivorans marinus Proteobacteria Rare neg + w w + + + neg +
Aliarcobacter butzleri Proteobacteria Rare neg neg neg
Aliarcobacter cryaerophilus Proteobacteria Rare neg neg +
Aliarcobacter skirrowii Proteobacteria Rare neg neg
Alicyclobacillus acidocaldarius Firmicutes Rare + neg neg + + d(neg) neg
Aliiruegeria sabulilitoris Proteobacteria Unlikely neg + + + + + + + +
Alistipes communis Bacteroidetes Rare neg neg + + w neg
Alistipes dispar Bacteroidetes Rare neg neg + + w neg
Alistipes finegoldii Bacteroidetes Moderate neg d + + + +
Alistipes ihumii Bacteroidetes Moderate neg +
Alistipes indistinctus Bacteroidetes Moderate neg w + + + +
Alistipes inops Bacteroidetes Rare neg
Alistipes marseilloanorexicus Bacteroidetes Rare neg
Alistipes massiliensis Bacteroidetes Rare neg
Alistipes megaguti Bacteroidetes Rare neg + neg + w w + + + w neg + neg + + neg
Alistipes montrealensis Bacteroidetes Rare neg + + +
Alistipes obesi Bacteroidetes Moderate neg neg
Alistipes onderdonkii Bacteroidetes Moderate neg +
Alistipes onderdonkii subsp. vulgaris Bacteroidetes Rare neg vr + + + vr
Alistipes provencensis Bacteroidetes Rare neg neg w neg neg neg neg + + neg w neg w neg + w
Alistipes putredinis Bacteroidetes Widespread neg neg
Alistipes senegalensis Bacteroidetes Moderate neg +
Alistipes shahii Bacteroidetes Widespread neg +
Alistipes timonensis Bacteroidetes Moderate neg neg
Alkalibacillus halophilus Firmicutes Unlikely +
Alkalihalobacillus alcalophilus Firmicutes Unlikely +
Alkalihalobacillus gibsonii Firmicutes Rare +
Alkalihalobacillus halodurans Firmicutes Rare + neg neg neg + neg neg neg + + neg neg neg neg neg neg neg
Alkalihalobacillus oshimensis Firmicutes Unlikely + neg neg + + + +
Alkaliphilus metalliredigens Firmicutes Rare +
Alkaliphilus oremlandii Firmicutes Non + +
Alkaliphilus transvaalensis Firmicutes Non +
Alkanindiges illinoisensis Proteobacteria Non vr
Allisonella histaminiformans Firmicutes Minor neg
Allobaculum fili Firmicutes Rare + neg
Allobaculum mucilyticum Firmicutes Rare + neg
Alloprevotella rava Bacteroidetes Rare neg neg + + + neg neg
Alloprevotella tannerae Bacteroidetes Minor neg neg + + + neg neg neg
Alloscardovia omnicolens Actinobacteria Minor + + + neg +
Alteracholeplasma palmae Tenericutes Rare unk +
Alterileibacterium massiliense Firmicutes Rare neg
Amaricoccus kaplicensis Proteobacteria Unlikely neg + + + +
Amedibacillus dolichus Firmicutes Minor + neg neg neg neg neg neg +
Amedibacterium intestinale Firmicutes Rare + neg + + neg neg
Aminipila butyrica Firmicutes Rare +
Aminipila terrae Firmicutes Rare + +
Aminomonas paucivorans Synergistetes Rare neg
Ammonifex degensii Firmicutes Non neg
Amycolatopsis alba Actinobacteria Rare + + + + + + + neg + neg +
Amycolatopsis mediterranei Actinobacteria Rare + + + + + + + +
Amycolatopsis thailandensis Actinobacteria Rare + neg + + + neg + neg +
Amycolatopsis vancoresmycina Actinobacteria Unlikely +
Anaerobiospirillum succiniciproducens Proteobacteria Rare neg neg + neg + neg neg neg
Anaerobiospirillum thomasii Proteobacteria Rare neg neg + +
Anaerobutyricum hallii Firmicutes Widespread + neg neg w + w w neg neg neg neg
Anaerobutyricum soehngenii Firmicutes Rare + + + +
Anaerococcus hydrogenalis Firmicutes Rare + neg neg + + neg neg neg neg
Anaerococcus jeddahensis Firmicutes Rare +
Anaerococcus lactolyticus Firmicutes Rare + neg + + + neg
Anaerococcus marasmi Firmicutes Rare + neg neg + + neg + + + neg neg neg neg + neg +
Anaerococcus mediterraneensis Firmicutes Rare +
Anaerococcus murdochii Firmicutes Rare + + +
Anaerococcus obesiensis Firmicutes Rare +
Anaerococcus octavius Firmicutes Rare + neg neg + + + + neg neg
Anaerococcus prevotii Firmicutes Minor + + d(+) d(+) + neg
Anaerococcus provencensis Firmicutes Rare +
Anaerococcus rubeinfantis Firmicutes Rare + neg neg neg neg neg neg neg + + neg neg neg neg + neg neg
Anaerococcus senegalensis Firmicutes Rare + +
Anaerococcus tetradius Firmicutes Rare + d(+) + neg neg
Anaerococcus vaginalis Firmicutes Minor + + + + neg
Anaerocolumna aminovalerica Firmicutes Rare + neg neg neg
Anaerocolumna cellulosilytica Firmicutes Rare +
Anaerocolumna chitinilytica Firmicutes Rare +
Anaerocolumna sedimenticola Firmicutes Rare + + + + + +
Anaerocolumna xylanovorans Firmicutes Rare +
Anaerofilum pentosovorans Firmicutes Rare +
Anaerofustis stercorihominis Firmicutes Minor + + neg neg
Anaeroglobus geminatus Firmicutes Minor neg neg neg + neg + neg neg neg
Anaeromassilibacillus senegalensis Firmicutes Rare neg
Anaerorhabdus furcosa Firmicutes Rare neg
Anaerosalibacter bizertensis Firmicutes Rare +
Anaerosalibacter massiliensis Firmicutes Rare + neg neg + neg neg
Anaerosphaera massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg + neg
Anaerospora hongkongensis Firmicutes Rare neg
Anaerostipes butyraticus Firmicutes Rare + neg + + neg neg
Anaerostipes caccae Firmicutes Moderate + neg + neg + + + + neg w + + neg neg
Anaerostipes coli Firmicutes Rare + neg
Anaerostipes hadrus Firmicutes Moderate + d(neg) d(+) w(+) + w(+) w(+) neg neg d(+) w
Anaerostipes hominis Firmicutes Rare vr
Anaerostipes rhamnosivorans Firmicutes Rare vr w + + + + + + w + + w
Anaerostipes rhamnosus Firmicutes Rare +
Anaerotignum faecicola Firmicutes Rare + neg
Anaerotignum lactatifermentans Firmicutes Moderate neg +
Anaerotignum neopropionicum Firmicutes Rare neg
Anaerotignum propionicum Firmicutes Rare + neg neg neg
Anaerotruncus colihominis Firmicutes Moderate + neg + + neg neg
Anaerotruncus massiliensis Firmicutes Rare neg neg neg neg + + + neg neg neg neg + neg
Anaerotruncus rubiinfantis Firmicutes Moderate +
Anaerovorax odorimutans Firmicutes Rare vr
Ancylobacter polymorphus Proteobacteria Rare neg + + + + + + +
Aneurinibacillus aneurinilyticus Firmicutes Rare + neg neg neg neg neg + + neg neg neg neg neg
Aneurinibacillus migulanus Firmicutes Rare + neg neg + neg neg neg neg neg
Angelakisella massiliensis Firmicutes Rare neg
Anoxybacillus flavithermus Firmicutes Non +
Anoxybacillus gonensis Firmicutes Unlikely +
Anoxynatronum sibiricum Firmicutes Rare +
Anseongella ginsenosidimutans Bacteroidetes Unlikely neg +
Aquabacterium citratiphilum Proteobacteria Rare neg
Aquabacterium commune Proteobacteria Rare neg
Aquabacterium parvum Proteobacteria Rare neg
Aquamicrobium lusatiense Proteobacteria Unlikely neg +
Aquincola tertiaricarbonis Proteobacteria Non neg neg neg
Arabia massiliensis Actinobacteria Rare neg
Arachnia propionica Actinobacteria Rare +
Arcanobacterium haemolyticum Actinobacteria Rare + neg + vr neg neg
Arthrobacter agilis Actinobacteria Non + neg neg neg
Arthrobacter castelli Actinobacteria Rare + neg neg neg
Arthrobacter citreus Actinobacteria Unlikely vr
Arthrobacter gandavensis Actinobacteria Unlikely + neg neg w d d neg d w neg neg neg neg
Arthrobacter globiformis Actinobacteria Unlikely + +
Arthrobacter koreensis Actinobacteria Unlikely +
Arthrobacter luteolus Actinobacteria Unlikely + + +
Arthrobacter parietis Actinobacteria Non + + neg
Arthrobacter pigmenti Actinobacteria Non + d neg neg
Arthrobacter russicus Actinobacteria Unlikely +
Asaccharospora irregularis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Asticcacaulis biprosthecium Proteobacteria Unlikely neg
Asticcacaulis excentricus Proteobacteria Unlikely neg
Atlantibacter hermannii Proteobacteria Rare neg + + + + + +
Atopobium minutum Actinobacteria Minor + neg vr d(+) d(neg) neg neg neg
Atopostipes suicloacalis Firmicutes Unlikely + +
Aureimonas altamirensis Proteobacteria Unlikely neg + w w + + + + + + + neg
Aureimonas ureilytica Proteobacteria Unlikely neg vr
Averyella dalhousiensis Proteobacteria Rare neg + + + + + +
Azoarcus pumilus Proteobacteria Rare neg neg
Azospirillum lipoferum Proteobacteria Rare neg + + + + neg d(+) neg d(+)
Azotobacter vinelandii Proteobacteria Non neg
Bacilliculturomica massiliensis Firmicutes Rare +
Bacillus altitudinis Firmicutes Rare + + + +
Bacillus amyloliquefaciens Firmicutes Rare + neg d(+) neg + neg neg d + + neg + neg neg neg neg
Bacillus andreraoultii Firmicutes Rare + + neg + neg neg neg + + neg neg + neg neg neg
Bacillus aneurinolyticus Firmicutes Rare + neg vr neg neg neg neg vr neg neg
Bacillus anthracis Firmicutes Non + neg neg d neg neg neg + neg neg + neg neg neg neg
Bacillus atrophaeus Firmicutes Rare + neg + neg + neg neg neg + + neg d(+) neg neg neg neg
Bacillus badius DSM 23T Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacillus badius DSM 5610 Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacillus baekryungensis Firmicutes Non + neg + + + + neg + +
Bacillus benzoevorans Firmicutes Rare + neg neg neg
Bacillus caccae Firmicutes Rare +
Bacillus cereus Firmicutes Minor + neg neg neg + neg neg neg d vr neg + neg neg neg neg
Bacillus circulans Firmicutes Rare + neg + neg + neg neg + + + neg + neg neg vr neg
Bacillus clausii Firmicutes Rare + neg neg neg + neg neg neg + + neg neg neg + neg neg
Bacillus cytotoxicus Firmicutes Rare + neg neg + neg neg neg + neg neg neg + neg neg neg neg
Bacillus dakarensis Firmicutes Rare + + + neg neg + neg neg neg + + neg neg neg + neg
Bacillus endophyticus Firmicutes Unlikely + + neg + + + + d(+)
Bacillus firmus Firmicutes Rare + neg vr neg + neg neg neg + vr neg vr neg neg vr neg
Bacillus fordii Firmicutes Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacillus halotolerans Firmicutes Rare + + neg + neg neg neg + + neg neg + neg neg + neg
Bacillus idriensis Firmicutes Rare + neg neg neg + neg neg neg + neg neg neg neg neg neg neg
Bacillus infantis Firmicutes Rare +
Bacillus kwashiorkori Firmicutes Rare + neg neg + neg neg neg + + neg neg neg neg neg neg neg
Bacillus licheniformis Firmicutes Minor + + neg + neg neg + + + neg + neg + vr neg
Bacillus marasmi Firmicutes Rare + neg neg + neg neg + + + + + neg neg neg
Bacillus massilioanorexius Firmicutes Rare + neg + + + w +
Bacillus massiliogabonensis Firmicutes Unlikely neg neg neg neg neg neg + neg neg neg neg neg neg neg neg neg
Bacillus massilionigeriensis Firmicutes Rare + neg neg + neg +
Bacillus mediterraneensis Firmicutes Rare + + neg + neg neg neg + + neg + neg neg + neg
Bacillus methanolicus Firmicutes Non + d(+) neg + d neg
Bacillus mojavensis Firmicutes Rare + + + + + + + + w
Bacillus mycoides Firmicutes Rare + neg neg neg + neg neg neg + neg neg neg w neg neg neg neg
Bacillus niameyensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacillus pakistanensis Firmicutes Rare + neg neg + neg neg neg + + neg neg neg neg + neg neg
Bacillus phocaeensis Firmicutes Rare + neg neg neg + neg neg neg + neg neg neg neg neg neg
Bacillus pseudofirmus Firmicutes Rare +
Bacillus pseudomycoides Firmicutes Unlikely + neg + neg
Bacillus pumilus Firmicutes Rare + neg + neg + neg neg neg + + neg + neg + neg neg
Bacillus rubiinfantis Firmicutes Rare + neg neg neg + neg neg + + + neg neg neg neg neg neg neg
Bacillus sinesaloumensis Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacillus siralis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacillus smithii Firmicutes Rare + d d(neg) neg + neg neg neg + d(neg) neg d(neg) d(+) neg neg + neg
Bacillus sonorensis Firmicutes Rare + + + +
Bacillus subtilis Firmicutes Minor + neg + neg + neg neg neg + + neg + neg neg vr neg
Bacillus testis Firmicutes Rare + + + neg + + neg + +
Bacillus thuringiensis Firmicutes Rare + neg neg neg + neg neg neg + + neg + neg neg neg neg
Bacillus timonensis Firmicutes Rare neg +
Bacillus tuaregi Firmicutes Rare + + neg + neg neg neg + neg neg + neg neg neg neg
Bacillus vallismortis Firmicutes Rare + neg + neg + neg neg + + + + + neg neg neg neg
Bacillus velezensis Variant polyfermenticus Firmicutes Rare + + neg + neg neg neg + + neg neg + neg neg + neg
Bacillus wiedmannii Firmicutes Rare + neg neg + neg neg neg + neg neg neg + neg neg neg neg
Bacteroides acidifaciens Bacteroidetes Moderate neg
Bacteroides bouchesdurhonensis Bacteroidetes Moderate neg + + + + + + neg +
Bacteroides caccae Bacteroidetes Widespread neg + + + + + d(+) + +
Bacteroides caecimuris Bacteroidetes Rare neg + + + + +
Bacteroides cellulosilyticus Bacteroidetes Moderate neg w neg neg + + + +
Bacteroides clarus Bacteroidetes Moderate neg neg + + + +
Bacteroides congonensis Bacteroidetes Moderate neg + + + + neg + + + neg + + + neg + neg
Bacteroides coprosuis Bacteroidetes Rare neg
Bacteroides cutis Bacteroidetes Moderate neg
Bacteroides eggerthii Bacteroidetes Widespread neg + + + vr neg + w w(+) vr neg neg neg +
Bacteroides faecalis Bacteroidetes Rare neg w + + + w
Bacteroides faecichinchillae Bacteroidetes Rare neg neg + + + neg
Bacteroides faecis Bacteroidetes Moderate neg + + + + + +
Bacteroides finegoldii Bacteroidetes Widespread neg + + + + + + +
Bacteroides fluxus Bacteroidetes Moderate neg neg + + + + +
Bacteroides fragilis Bacteroidetes Widespread neg neg neg neg + + + neg neg neg +
Bacteroides galacturonicus Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg
Bacteroides gallinarum Bacteroidetes Moderate neg + + + w +
Bacteroides graminisolvens Bacteroidetes Rare neg +
Bacteroides helcogenes Bacteroidetes Rare neg neg neg + + + + neg neg +
Bacteroides heparinolyticus Bacteroidetes Rare neg + + + +
Bacteroides ihuae Bacteroidetes Rare neg + neg + neg neg + + + neg neg + + + + neg
Bacteroides ilei Bacteroidetes Minor neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacteroides intestinalis Bacteroidetes Widespread neg + + + + + +
Bacteroides luhongzhouii Bacteroidetes Rare neg
Bacteroides luti Bacteroidetes Rare neg + +
Bacteroides mediterraneensis Bacteroidetes Moderate neg + + neg + neg neg neg +
Bacteroides ndongoniae Bacteroidetes Minor neg neg neg neg neg neg neg
Bacteroides neonati Bacteroidetes Minor neg neg neg neg neg neg
Bacteroides nordii Bacteroidetes Moderate neg neg + + d +
Bacteroides oleiciplenus Bacteroidetes Moderate neg + + + + + +
Bacteroides ovatus Bacteroidetes Widespread neg + + + + + + + +
Bacteroides pectinophilus Bacteroidetes Moderate neg neg neg neg w neg neg neg neg neg
Bacteroides propionicifaciens Bacteroidetes Rare neg + + + + + neg neg
Bacteroides pyogenes Bacteroidetes Minor neg neg + + + + neg w neg
Bacteroides reticulotermitis Bacteroidetes Rare neg + + + + +
Bacteroides salyersiae Bacteroidetes Moderate neg + + + d +
Bacteroides sp. Strain D8 Bacteroidetes Rare neg + + + + +
Bacteroides stercorirosoris Bacteroidetes Moderate neg + + + + +
Bacteroides stercoris Bacteroidetes Widespread neg neg d + + + + + d +
Bacteroides thetaiotaomicron Bacteroidetes Widespread neg + + + + w + + +
Bacteroides timonensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Bacteroides togonis Bacteroidetes Minor neg + neg + neg neg neg neg + neg + +
Bacteroides uniformis Bacteroidetes Widespread neg + + + + + + neg +
Bacteroides xylanisolvens Bacteroidetes Widespread neg + + + + + + neg +
Bacteroides zhangwenhongi Bacteroidetes Rare neg
Bacteroides zoogleoformans Bacteroidetes Rare neg + + w + + neg neg neg +
Bariatricus massiliensis Firmicutes Minor +
Barnesiella intestinihominis Bacteroidetes Moderate neg neg + + neg neg
Barnesiella viscericola Bacteroidetes Rare neg neg + + neg neg
Bartonella vinsonii Proteobacteria Non neg neg neg
Bavariicoccus seileri Firmicutes Rare +
Bdellovibrio bacteriovorus Bdellovibrionota Moderate neg
Beduinella massiliensis Firmicutes Rare neg
Beduini massiliensis Firmicutes Rare neg neg neg + neg neg
Beduinibacterium massiliense Firmicutes Rare +
Belnapia soli Proteobacteria Rare neg neg w neg + neg neg neg neg neg neg neg neg neg neg neg
Berryella intestinalis Actinobacteria Rare +
Bhargavaea beijingensis Firmicutes Rare + neg + neg neg neg neg neg neg neg
Bhargavaea cecembensis Firmicutes Non + neg neg neg neg neg neg neg
Bifidobacterium adolescentis Actinobacteria Widespread + + neg d neg neg d + d neg neg d neg neg + neg
Bifidobacterium aerophilum Actinobacteria Rare + neg neg + neg neg neg + + neg neg neg neg neg neg
Bifidobacterium angulatum Actinobacteria Moderate + + neg + neg neg + + neg neg neg + neg neg + neg
Bifidobacterium animalis Actinobacteria Moderate + + + + + d(neg) neg neg + neg neg + neg
Bifidobacterium animalis subsp. lactis Actinobacteria Rare + + neg neg neg neg neg + neg neg + neg neg + neg
Bifidobacterium asteroides Actinobacteria Rare + neg + neg neg d + d(neg) neg + d(+)
Bifidobacterium avesanii Actinobacteria Rare + + neg + neg neg w + + neg neg neg neg + +
Bifidobacterium biavatii Actinobacteria Rare + neg neg w neg neg neg + w neg neg neg neg neg neg
Bifidobacterium bifidum Actinobacteria Widespread + neg neg + neg neg + + neg neg neg neg neg neg neg
Bifidobacterium boum Actinobacteria Rare + neg neg + neg neg + + neg neg neg neg neg neg neg neg
Bifidobacterium breve Actinobacteria Widespread + neg vr + + neg + + vr neg + neg neg neg neg
Bifidobacterium callitrichidarum Actinobacteria Rare + + neg + neg neg w + neg neg neg neg neg neg neg
Bifidobacterium catenulatum Actinobacteria Moderate + neg vr neg neg + + neg neg neg + neg neg + neg
Bifidobacterium catenulatum subsp. kashiwanohense Actinobacteria Rare + + + + + + neg + +
Bifidobacterium choerinum Actinobacteria Rare + neg neg neg neg + + neg neg neg neg
Bifidobacterium coryneforme Actinobacteria Rare + + neg neg neg +
Bifidobacterium cuniculi Actinobacteria Rare + + + + + neg neg +
Bifidobacterium dentium Actinobacteria Moderate + + neg + neg neg + + + neg + neg neg + neg
Bifidobacterium eulemuris Actinobacteria Rare + w neg w neg + + + neg + neg
Bifidobacterium faecale Actinobacteria Rare + + neg + neg neg + + neg neg neg neg neg neg neg
Bifidobacterium gallicum Actinobacteria Rare + + neg + neg neg + + neg neg neg + neg neg + neg
Bifidobacterium imperatoris Actinobacteria Rare + + neg neg + + neg neg + +
Bifidobacterium indicum Actinobacteria Rare + neg + neg d + d neg + neg
Bifidobacterium lemurum Actinobacteria Rare + + neg d neg neg + + + neg + + neg neg + neg
Bifidobacterium longum subsp. infantis Actinobacteria Moderate + neg neg + neg neg + + + neg + neg neg d(neg) neg
Bifidobacterium longum subsp. longum Actinobacteria Widespread + + neg + neg neg + + d neg + neg neg + neg
Bifidobacterium longum subsp. suis Actinobacteria Rare + + + d neg + + d neg +
Bifidobacterium merycicum Actinobacteria Rare + + w + + neg neg + +
Bifidobacterium minimum Actinobacteria Rare + neg + + neg neg neg neg
Bifidobacterium mongoliense Actinobacteria Unlikely + + neg neg neg neg + + neg neg neg vr neg neg neg neg
Bifidobacterium moukalabense Actinobacteria Rare + + + + neg
Bifidobacterium myosotis Actinobacteria Rare + + neg d neg d + d neg neg neg neg neg + neg
Bifidobacterium pseudocatenulatum Actinobacteria Widespread + + neg + neg neg + + vr neg + neg neg + neg
Bifidobacterium pseudolongum Actinobacteria Minor + + neg + neg neg + + neg neg + neg neg + neg
Bifidobacterium pseudolongum subsp. globosum Actinobacteria Rare + + + + d neg d(w) +
Bifidobacterium pullorum subsp. gallinarum Actinobacteria Rare + d(+) + d(+) + d(+) neg + +
Bifidobacterium pullorum subsp. saeculare Actinobacteria Rare + neg neg
Bifidobacterium ramosum Actinobacteria Rare + + neg + neg neg neg + + neg + neg neg + neg
Bifidobacterium reuteri Actinobacteria Rare + neg neg + neg neg neg + neg neg neg neg neg neg + neg
Bifidobacterium ruminantium Actinobacteria Minor + neg neg + neg neg + + neg neg neg + neg neg neg neg
Bifidobacterium saguini Actinobacteria Rare + + neg + neg neg + + neg neg neg + neg neg + neg
Bifidobacterium scardovii Actinobacteria Minor + + neg + neg neg + + + + neg + neg neg + neg
Bifidobacterium stellenboschense Actinobacteria Rare + + neg + neg neg + + neg neg neg + neg neg + neg
Bifidobacterium subtile Actinobacteria Rare + neg + + + neg neg d neg
Bifidobacterium thermacidophilum Actinobacteria Rare + + + + neg neg vr neg vr
Bifidobacterium thermophilum Actinobacteria Rare + neg neg + neg neg + + neg neg neg neg neg neg neg neg
Bifissio spartinae Bacteroidetes Rare neg
Bilophila wadsworthia Desulfobacterota Widespread neg neg
Bittarella massiliensis Firmicutes Moderate neg
Blastococcus massiliensis Actinobacteria Rare +
Blastomonas natatoria Proteobacteria Unlikely neg + + +
Blautia brookingsii Firmicutes Rare + neg
Blautia caecimuris Firmicutes Rare + + + neg + +
Blautia coccoides Firmicutes Minor + + + + + + + + + +
Blautia faecicola Firmicutes Rare + w neg neg neg neg w neg neg neg neg neg neg neg neg neg
Blautia faecis Firmicutes Rare + neg + neg + neg neg neg neg neg + neg + neg neg
Blautia glucerasea Firmicutes Rare + + + + neg +
Blautia hansenii Firmicutes Moderate + neg neg + neg neg neg neg
Blautia hominis Firmicutes Rare + + + + + neg + + + + + + neg neg + neg
Blautia hydrogenotrophica Firmicutes Moderate + neg + d
Blautia intestinalis Firmicutes Rare +
Blautia liquoris Firmicutes Rare +
Blautia luti Firmicutes Minor + + + + + + + + + neg +
Blautia marasmi Firmicutes Rare +
Blautia massiliensis Firmicutes Moderate neg + + + + + + + + + + + +
Blautia obeum Firmicutes Widespread + + neg + + + + vr + + +
Blautia phocaeensis Firmicutes Rare +
Blautia producta Firmicutes Widespread + + neg + d(+) + + neg neg +
Blautia provencensis Firmicutes Rare +
Blautia pseudococcoides Firmicutes Rare + + + + + + + + + +
Blautia schinkii Firmicutes Rare + + + + +
Blautia stercoris Firmicutes Minor + + + neg + neg neg + neg neg neg + neg + neg neg
Blautia wexlerae Firmicutes Moderate + + + vr +
Bordetella bronchiseptica Proteobacteria Non neg neg
Bordetella hinzii Proteobacteria Unlikely neg neg neg neg
Bordetella trematum Proteobacteria Non neg neg neg neg
Bosea massiliensis Proteobacteria Rare neg neg neg neg
Brachybacterium conglomeratum Actinobacteria Rare + + neg d + + d neg d d(neg)
Brachybacterium faecium Actinobacteria Unlikely + + + neg
Brachybacterium ginsengisoli Actinobacteria Unlikely + +
Brachybacterium massiliense Actinobacteria Rare + neg + + + + + + neg + neg + + + neg +
Brachybacterium muris Actinobacteria Rare + + + + + + d + + neg
Brachybacterium paraconglomeratum Actinobacteria Rare + + neg + + + + neg neg neg
Brachymonas chironomi Proteobacteria Unlikely neg neg neg neg neg neg neg
Brachyspira aalborgi Spirochaetes Rare neg + + +
Brachyspira hyodysenteriae Spirochaetes Rare neg
Brachyspira pilosicoli Spirochaetes Unlikely neg d(+) + d + d(+) + d
Bradyrhizobium denitrificans Proteobacteria Rare neg neg
Bradyrhizobium elkanii Proteobacteria Rare neg neg
Bradyrhizobium ganzhouense Proteobacteria Unlikely neg
Bradyrhizobium icense Proteobacteria Unlikely neg
Bradyrhizobium japonicum Proteobacteria Rare neg neg
Bradyrhizobium neotropicale Proteobacteria Rare neg neg
Brassicibacter mesophilus Firmicutes Rare neg
Brenneria populi Li et al. 2015 Proteobacteria Rare neg + neg + neg neg + + + d + neg neg + neg
Brevibacillus agri Firmicutes Unlikely + neg neg neg + neg neg neg + d(+) neg d(+) neg neg neg neg
Brevibacillus borstelensis Firmicutes Rare + neg neg neg w neg neg neg neg neg neg w(neg) neg w(neg) neg neg
Brevibacillus brevis Firmicutes Rare vr neg + + + vr neg + neg neg
Brevibacillus centrosporus Firmicutes Unlikely + neg neg neg neg neg neg neg + neg + + neg neg neg neg
Brevibacillus choshinensis Firmicutes Rare + neg d neg + neg
Brevibacillus formosus Firmicutes Unlikely + neg + neg + neg neg neg neg d(+) neg
Brevibacillus laterosporus Firmicutes Rare vr + + + + neg
Brevibacillus massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Brevibacillus parabrevis Firmicutes Unlikely vr neg + neg + neg
Brevibacillus thermoruber Firmicutes Non +
Brevibacterium aurantiacum Actinobacteria Unlikely + d + + + neg
Brevibacterium casei Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Brevibacterium celere Actinobacteria Rare + neg neg neg neg
Brevibacterium epidermidis Actinobacteria Rare + neg neg neg
Brevibacterium ihuae Actinobacteria Rare +
Brevibacterium iodinum Actinobacteria Unlikely vr neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Brevibacterium linens Actinobacteria Unlikely + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Brevibacterium luteolum Actinobacteria Rare +
Brevibacterium mcbrellneri Actinobacteria Unlikely + neg +
Brevibacterium otitidis Actinobacteria Non +
Brevibacterium paucivorans Actinobacteria Rare +
Brevibacterium pityocampae Actinobacteria Rare + neg neg neg neg neg
Brevibacterium ravenspurgense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Brevibacterium samyangense Actinobacteria Rare + w neg neg
Brevibacterium sanguinis Actinobacteria Rare + neg neg neg neg neg neg
Brevibacterium senegalense Actinobacteria Rare + neg neg neg
Brevundimonas aurantiaca Proteobacteria Rare neg
Brevundimonas bacteroides Proteobacteria Rare neg
Brevundimonas bullata Proteobacteria Rare neg neg neg neg + neg neg
Brevundimonas diminuta Proteobacteria Rare neg neg neg neg neg neg
Brevundimonas intermedia Proteobacteria Rare neg
Brevundimonas nasdae Proteobacteria Rare neg + + +
Brevundimonas terrae Proteobacteria Rare neg neg neg neg neg
Brevundimonas vesicularis Proteobacteria Rare neg neg neg neg neg neg
Brochothrix thermosphacta Firmicutes Unlikely + vr + neg neg + + + neg + neg + + neg
Brucella anthropi Proteobacteria Unlikely neg + + + + +
Brucella cytisi Proteobacteria Rare neg
Brucella melitensis Proteobacteria Non neg
Brucella tritici Proteobacteria Unlikely neg + + neg neg +
Buchnera aphidicola Proteobacteria Non neg
Bulleidia extructa Firmicutes Rare +
Burkholderia arboris Proteobacteria Rare neg + w
Burkholderia cepacia Proteobacteria Rare neg + neg + + + + + neg + +
Burkholderia gladioli Proteobacteria Unlikely neg + + + + + + neg + +
Burkholderia mallei Proteobacteria Unlikely neg
Burkholderia multivorans Proteobacteria Rare neg + + + neg +
Burkholderia pseudomallei Proteobacteria Unlikely neg
Burkholderia pyrrocinia Proteobacteria Unlikely neg + + neg
Burkholderia vietnamiensis Proteobacteria Rare neg + + + + + + +
Buttiauxella agrestis Proteobacteria Rare neg + d(+) neg + + + + + neg +
Butyribacter intestini Firmicutes Rare + neg + neg neg + + neg neg neg w neg neg neg
Butyricicoccus faecihominis Firmicutes Rare + neg neg + neg
Butyricicoccus porcorum Firmicutes Rare + neg + neg neg + + neg neg neg
Butyricicoccus pullicaecorum Firmicutes Minor + neg + + neg +
Butyricimonas faecalis Bacteroidetes Rare neg neg neg neg neg neg neg + + + neg neg neg neg neg neg neg
Butyricimonas faecihominis Bacteroidetes Rare neg neg neg neg neg + + neg neg neg neg neg neg
Butyricimonas paravirosa Bacteroidetes Rare neg neg neg neg neg + + neg neg neg neg neg neg
Butyricimonas phoceensis Bacteroidetes Rare neg + +
Butyricimonas synergistica Bacteroidetes Minor neg neg neg neg neg neg + + neg neg neg neg neg neg
Butyricimonas virosa Bacteroidetes Moderate neg neg neg neg neg + + neg neg neg neg neg neg
Butyrivibrio crossotus Firmicutes Widespread neg neg w neg w neg neg neg neg
Butyrivibrio fibrisolvens Firmicutes Minor neg + + + + neg + +
Butyrivibrio hungatei Firmicutes Unlikely neg
Butyrivibrio proteoclasticus Firmicutes Rare +
Caballeronia novacaledonica Proteobacteria Rare neg neg
Caecibacter massiliensis Firmicutes Rare
Caldibacillus thermoamylovorans Firmicutes Unlikely + neg + neg + neg neg + + + neg + + neg neg + neg
Caldicellulosiruptor diazotrophicus Firmicutes Non + +
Caldicoprobacter faecalis Firmicutes Unlikely neg + + + + + + + +
Caloranaerobacter azorensis Firmicutes Non neg +
Campylobacter avium Proteobacteria Non neg
Campylobacter coli Proteobacteria Unlikely neg neg neg
Campylobacter concisus Proteobacteria Minor neg neg neg
Campylobacter curvus Proteobacteria Rare neg neg neg
Campylobacter faecalis Proteobacteria Rare neg
Campylobacter fetus subsp. fetus Proteobacteria Rare neg
Campylobacter gracilis Proteobacteria Minor neg neg neg
Campylobacter hominis Proteobacteria Minor neg +
Campylobacter hyointestinalis subsp. hyointestinalis Proteobacteria Unlikely neg
Campylobacter jejuni subsp. doylei Proteobacteria Rare neg
Campylobacter jejuni subsp. jejuni Proteobacteria Unlikely neg
Campylobacter lanienae Proteobacteria Rare neg
Campylobacter lari subsp. concheus Proteobacteria Rare neg
Campylobacter lari subsp. lari Proteobacteria Rare neg neg neg neg
Campylobacter mucosalis Proteobacteria Rare neg
Campylobacter peloridis Proteobacteria Rare neg
Campylobacter rectus Proteobacteria Rare neg neg neg
Campylobacter showae Proteobacteria Rare neg neg
Campylobacter sputorum Proteobacteria Non neg neg
Campylobacter troglodytis Proteobacteria Rare neg
Campylobacter upsaliensis Proteobacteria Rare neg neg neg
Campylobacter ureolyticus Proteobacteria Minor neg
Candidatus Babela massiliensis Candidatus Dependentiae Unlikely neg
Candidatus Dorea massiliensis Firmicutes Rare +
Candidatus Stoquefichus massiliensis Firmicutes Rare + +
Capnocytophaga canimorsus Bacteroidetes Unlikely neg neg d d(+) + d(+) neg neg
Capnocytophaga gingivalis Bacteroidetes Non neg neg neg neg + + neg neg neg
Capnocytophaga granulosa Bacteroidetes Rare neg vr + + neg neg
Capnocytophaga leadbetteri Bacteroidetes Rare neg neg neg neg w(neg) neg
Capnocytophaga ochracea Bacteroidetes Rare neg neg neg d(+) d + neg neg neg neg
Capnocytophaga sputigena Bacteroidetes Rare neg neg d(+) neg + neg neg neg
Capnocytophaga stomatis Bacteroidetes Unlikely neg + neg
Caproicibacter fermentans Firmicutes Rare neg + +
Cardiobacterium hominis Proteobacteria Rare neg neg + neg + + neg neg
Cardiobacterium valvarum Proteobacteria Rare neg d neg + + neg
Carnobacterium divergens Firmicutes Non + neg neg + neg neg d(neg) + + neg neg + neg neg neg neg
Carnobacterium inhibens Firmicutes Rare + + + neg neg + + + neg neg + neg neg neg neg
Carnobacterium maltaromaticum Firmicutes Unlikely + neg neg + neg neg + + + neg neg + neg neg neg neg
Carnobacterium mobile Firmicutes Non + neg neg + neg neg + + + neg neg + neg d neg neg
Casaltella massiliensis Firmicutes Rare neg
Catenibacillus scindens Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Catenibacterium mitsuokai Firmicutes Moderate + neg + + + + neg neg neg
Catenulispora acidiphila Actinobacteria Unlikely +
Catonella morbi Firmicutes Rare neg neg neg d(+) neg d(+) neg neg
Caulobacter vibrioides Proteobacteria Unlikely neg neg neg neg neg neg + neg neg neg +
Cedecea davisae Proteobacteria Rare neg neg neg + + + neg
Cedecea lapagei Proteobacteria Rare neg neg + + neg neg
Cedecea neteri Proteobacteria Rare neg neg + + + neg +
Cellulomonas carbonis Actinobacteria Unlikely + + neg + + + + neg neg neg +
Cellulomonas composti Actinobacteria Rare + + + + + + w neg w +
Cellulomonas denverensis Actinobacteria Rare + d + + + + + +
Cellulomonas fimi Actinobacteria Rare +
Cellulomonas flavigena Actinobacteria Rare + +
Cellulomonas hominis Actinobacteria Rare + neg + + + + + +
Cellulomonas massiliensis Actinobacteria Rare + neg
Cellulomonas parahominis Actinobacteria Rare +
Cellulomonas timonensis Actinobacteria Rare + + neg + neg neg + + + neg neg + neg neg + neg
Cellulosilyticum lentocellum Firmicutes Rare neg
Cellulosilyticum ruminicola Firmicutes Rare neg neg neg neg neg neg neg neg +
Cellulosimicrobium cellulans Actinobacteria Rare + + + + + + +
Centipeda periodontii Firmicutes Rare neg neg + + + d d neg neg
Cerasibacillus quisquiliarum Firmicutes Non + neg neg neg neg neg neg neg neg neg + + + + neg
Cetobacterium somerae Fusobacteria Rare neg
Chelatococcus asaccharovorans Proteobacteria Unlikely neg
Chitinophaga agri Bacteroidetes Unlikely neg
Chlamydia trachomatis Chlamydiae Non neg
Chloracidobacterium thermophilum Acidobacteria Non neg
Christensenella hongkongensis Firmicutes Minor + + + + vr +
Christensenella massiliensis Firmicutes Rare neg
Christensenella minuta Firmicutes Minor neg + + w + +
Christensenella timonensis Firmicutes Minor neg
Chromobacterium violaceum Proteobacteria Unlikely neg neg + neg + + neg neg
Chromohalobacter japonicus Proteobacteria Unlikely neg neg neg + + + + +
Chromohalobacter salexigens Proteobacteria Unlikely neg + + + + + +
Chryseobacterium gallinarum Bacteroidetes Unlikely neg neg w neg neg
Chryseobacterium gleum Bacteroidetes Unlikely neg + + + neg d(neg)
Chryseobacterium hominis Bacteroidetes Rare neg neg + + neg
Chryseobacterium indologenes Bacteroidetes Rare neg + neg + neg + + neg neg neg
Chryseobacterium oranimense Bacteroidetes Rare neg neg neg neg neg
Chryseobacterium taklimakanense Bacteroidetes Rare neg neg neg + + neg
Chryseobacterium viscerum Bacteroidetes Non neg neg
Chryseomicrobium amylolyticum Firmicutes Rare + neg neg neg neg + neg neg
Citrobacter amalonaticus Proteobacteria Rare neg + + + + + +
Citrobacter braakii Proteobacteria Rare neg + + + + + +
Citrobacter europaeus Proteobacteria Rare neg + + + + neg + + + neg + + + neg + neg
Citrobacter farmeri Proteobacteria Minor neg + + + + + +
Citrobacter freundii Proteobacteria Minor neg + + + + + +
Citrobacter gillenii Proteobacteria Rare neg + + + + + +
Citrobacter intermedius Proteobacteria Unlikely neg +
Citrobacter koseri Proteobacteria Minor neg + + + + + +
Citrobacter murliniae Proteobacteria Rare neg + vr + + +
Citrobacter pasteurii Proteobacteria Rare neg + + + + + + + + + + vr +
Citrobacter portucalensis Proteobacteria Rare neg + neg + + neg + + + neg + + + neg + neg
Citrobacter rodentium Proteobacteria Rare neg + + + + + +
Citrobacter sedlakii Proteobacteria Rare neg + + + + + + neg +
Citrobacter werkmanii Proteobacteria Rare neg + + + + + +
Citrobacter youngae Proteobacteria Rare neg + + + + neg +
Citroniella saccharovorans Firmicutes Rare + + neg
Cloacibacillus evryensis Synergistetes Minor neg
Cloacibacillus porcorum Synergistetes Rare neg
Cloacibacterium normanense Bacteroidetes Rare neg neg + + neg neg
Clostridioides difficile Firmicutes Widespread + neg neg + + + neg neg vr
Clostridioides mangenotii Firmicutes Rare + +
Clostridium acetobutylicum Firmicutes Rare + + + + + + w +
Clostridium amazonense Firmicutes Rare +
Clostridium amazonitimonense Firmicutes Rare + neg + + + +
Clostridium aminobutyricum Firmicutes Rare + + + + + +
Clostridium aminophilum Firmicutes Rare +
Clostridium amylolyticum Firmicutes Rare + +
Clostridium anorexicamassiliense Firmicutes Rare +
Clostridium argentinense Firmicutes Rare +
Clostridium aurantibutyricum Firmicutes Rare + neg + + + neg +
Clostridium autoethanogenum Firmicutes Rare +
Clostridium baratii Firmicutes Minor + neg + + + + neg vr neg
Clostridium beijerinckii Firmicutes Minor + + + + + neg
Clostridium boliviensis Firmicutes Rare +
Clostridium bornimense Firmicutes Rare vr
Clostridium botulinum Gp I Firmicutes Unlikely + neg
Clostridium botulinum Gp II Firmicutes Unlikely +
Clostridium botulinum Gp III Firmicutes Unlikely +
Clostridium botulinum Gp IV Firmicutes Unlikely +
Clostridium budayi Firmicutes Rare + neg + + + neg neg
Clostridium butyricum Firmicutes Widespread + neg neg
Clostridium cadaveris Firmicutes Rare +
Clostridium cagae Firmicutes Rare + neg neg neg + + neg + neg + neg neg neg + neg neg
Clostridium carboxidivorans Firmicutes Rare +
Clostridium carnis Firmicutes Rare +
Clostridium celatum Firmicutes Minor +
Clostridium cellulosi Firmicutes Unlikely neg neg + + + + neg neg +
Clostridium cellulovorans Firmicutes Rare neg + + + + +
Clostridium chartatabidum Firmicutes Rare + + neg + neg neg +
Clostridium chauvoei Firmicutes Rare + + + + + +
Clostridium cochlearium Firmicutes Minor +
Clostridium cocleatum Firmicutes Rare + neg + + + + neg neg neg neg
Clostridium colicanis Firmicutes Rare neg neg + + + + neg + neg
Clostridium colinum Firmicutes Rare + neg w + + neg neg
Clostridium combesii Firmicutes Rare + neg neg w neg neg neg neg
Clostridium culturomicium Firmicutes Rare + +
Clostridium dakarense Firmicutes Rare + neg + + neg neg
Clostridium diolis Firmicutes Rare + w + + + w +
Clostridium disporicum Firmicutes Minor + + + + + + +
Clostridium drakei Firmicutes Unlikely +
Clostridium estertheticum Firmicutes Unlikely + + + + + + +
Clostridium fallax Firmicutes Rare +
Clostridium felsineum Firmicutes Rare +
Clostridium fessum Firmicutes Rare + + + w neg neg neg
Clostridium gasigenes Firmicutes Unlikely + neg + neg + + neg neg neg
Clostridium haemolyticum Firmicutes Rare +
Clostridium herbivorans Firmicutes Rare +
Clostridium hylemonae Firmicutes Minor + vr vr + + neg neg vr vr
Clostridium ihumii Firmicutes Rare +
Clostridium innocuum Firmicutes Widespread + +
Clostridium intestinale Firmicutes Rare + +
Clostridium isatidis Firmicutes Unlikely + neg + + + + neg neg
Clostridium jeddahense Firmicutes Rare +
Clostridium jeddahitimonense Firmicutes Rare + +
Clostridium kluyveri Firmicutes Unlikely vr
Clostridium leptum Firmicutes Widespread +
Clostridium magnum Firmicutes Rare neg
Clostridium malenominatum Firmicutes Rare +
Clostridium manihotivorum Firmicutes Rare +
Clostridium massiliamazoniense Firmicutes Rare + neg neg + neg neg
Clostridium massiliodielmoense Firmicutes Rare + neg + + + +
Clostridium mediterraneense Firmicutes Rare +
Clostridium merdae Firmicutes Rare + neg neg + neg neg
Clostridium metallolevans Firmicutes Rare + + + +
Clostridium methoxybenzovorans Firmicutes Rare +
Clostridium methylpentosum Firmicutes Moderate + + + +
Clostridium minihomine Firmicutes Rare +
Clostridium moniliforme Firmicutes Rare + neg w(+) + + + neg neg neg
Clostridium neonatale Firmicutes Minor +
Clostridium niameyense Firmicutes Rare + neg + + + neg
Clostridium nigeriense Firmicutes Rare + neg + + + +
Clostridium nitritogenes Firmicutes Rare + neg w(+) + + neg d(+)
Clostridium novyi A Firmicutes Rare +
Clostridium oceanicum Firmicutes Rare + neg + + + + neg neg neg
Clostridium paraputrificum Firmicutes Moderate + neg neg neg neg
Clostridium pasteurianum Firmicutes Rare +
Clostridium perfringens Firmicutes Widespread + neg neg + + + neg + neg
Clostridium phoceensis Firmicutes Rare neg neg neg + neg neg
Clostridium polyendosporum Firmicutes Rare +
Clostridium polynesiense Firmicutes Rare + neg neg + neg + + + + neg neg + neg + +
Clostridium polysaccharolyticum Firmicutes Rare neg w d neg neg neg neg w
Clostridium populeti Firmicutes Rare neg + + + + neg neg +
Clostridium punense Firmicutes Rare +
Clostridium putrefaciens Firmicutes Minor +
Clostridium rectalis Firmicutes Rare + neg neg neg + + neg neg neg + neg neg neg + neg neg
Clostridium roseum Firmicutes Rare + + + + + + + neg +
Clostridium saccharobutylicum Firmicutes Unlikely +
Clostridium saccharoperbutylacetonicum Firmicutes Rare + + + + w neg +
Clostridium sardiniense Firmicutes Rare + neg + + + +
Clostridium sartagoforme Firmicutes Minor +
Clostridium saudiense Firmicutes Minor +
Clostridium scatologenes Firmicutes Rare +
Clostridium schirmacherense Firmicutes Unlikely +
Clostridium scindens Firmicutes Moderate + neg + + +
Clostridium senegalense Firmicutes Rare +
Clostridium septicum Firmicutes Rare + neg neg neg neg
Clostridium sporogenes Firmicutes Minor + neg + neg neg neg
Clostridium sporosphaeroides Firmicutes Minor +
Clostridium subterminale Firmicutes Rare + neg neg neg neg neg
Clostridium sulfidigenes Firmicutes Rare +
Clostridium symbiosum Firmicutes Widespread neg + neg + + + + neg neg neg +
Clostridium taeniosporum Firmicutes Unlikely +
Clostridium tertium Firmicutes Moderate + neg neg neg + neg neg + + + neg + neg + neg neg
Clostridium tetani Firmicutes Unlikely + neg neg neg neg neg
Clostridium thermarum Firmicutes Unlikely + + + neg +
Clostridium thermobutyricum Firmicutes Rare vr neg + neg + neg + +
Clostridium thiosulfatireducens Firmicutes Rare +
Clostridium transplantifaecale Firmicutes Rare + + + + + + + + + + + + + + + +
Clostridium tyrobutyricum Firmicutes Rare + neg + + neg d(neg)
Clostridium vincentii Firmicutes Rare +
Clostridium viride Firmicutes Rare +
Colibacter massiliensis Firmicutes Rare + + + +
Colidextribacter massiliensis Firmicutes Rare neg
Collinsella aerofaciens Actinobacteria Widespread + neg neg + + + + d(neg) d(neg) neg neg neg
Collinsella bouchesdurhonensis Actinobacteria Minor + neg neg + neg neg + + + neg neg neg + + + neg
Collinsella ihumii Actinobacteria Rare + + + + + +
Collinsella intestinalis Actinobacteria Moderate + neg + + + + neg + neg
Collinsella massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Collinsella phocaeensis Actinobacteria Rare neg
Collinsella provencensis Actinobacteria Rare +
Collinsella stercoris Actinobacteria Minor + neg + + + + + neg
Collinsella tanakaei Actinobacteria Minor + neg + + neg neg
Collinsella vaginalis Actinobacteria Rare +
Comamonas aquatica Proteobacteria Non neg
Comamonas denitrificans Proteobacteria Rare neg
Comamonas kerstersii Proteobacteria Rare neg neg
Comamonas koreensis Proteobacteria Unlikely neg
Comamonas terrigena Proteobacteria Unlikely neg
Comamonas testosteroni Proteobacteria Rare neg neg
Comamonas thiooxydans Proteobacteria Rare neg
Companilactobacillus alimentarius Firmicutes Rare + + d + neg neg vr + + neg neg + neg neg neg neg
Companilactobacillus farciminis Firmicutes Rare + neg neg + neg neg + + + neg neg neg neg + neg neg
Companilactobacillus mindensis Firmicutes Unlikely + neg + neg + + neg neg neg neg neg neg
Companilactobacillus versmoldensis Firmicutes Unlikely + neg + + neg + neg
Conexibacter woesei Actinobacteria Rare + neg
Congobacterium massiliense Firmicutes Rare +
Coprobacillus cateniformis Firmicutes Moderate + neg + + + + neg neg neg
Coprobacter fastidiosus Bacteroidetes Moderate neg neg + + neg
Coprobacter secundus Bacteroidetes Moderate neg neg + + + neg
Coprobacter secundus subsp. similis Bacteroidetes Rare neg neg + + + neg
Coprococcus catus Firmicutes Widespread + neg + w neg neg neg neg
Coprococcus comes Firmicutes Widespread + + + + + neg neg neg +
Coprococcus eutactus Firmicutes Widespread + neg + + + neg neg neg
Coprococcus phoceensis Firmicutes Rare vr neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Coraliomargarita akajimensis Verrucomicrobia Non neg neg neg + + + w neg + + neg neg neg + neg neg
Coriobacterium glomerans Actinobacteria Unlikely + + + + +
Corynebacterium accolens Actinobacteria Rare + neg + + + + neg neg
Corynebacterium afermentans Actinobacteria Rare + neg neg neg neg neg neg neg
Corynebacterium ammoniagenes Actinobacteria Rare + neg + neg vr neg
Corynebacterium amycolatum Actinobacteria Rare + neg neg neg + neg neg d + + neg neg + neg neg neg neg
Corynebacterium appendicis Actinobacteria Rare + neg d(+) neg neg neg neg
Corynebacterium argentoratense Actinobacteria Rare + + neg + d neg
Corynebacterium aurimucosum Actinobacteria Rare + neg neg + + neg neg neg neg neg
Corynebacterium bouchesdurhonense Actinobacteria Rare +
Corynebacterium bovis Actinobacteria Rare + d + + + neg neg neg
Corynebacterium callunae Actinobacteria Unlikely + neg + neg + + neg neg
Corynebacterium casei Actinobacteria Rare + neg neg + neg neg neg + + neg neg + neg neg neg neg
Corynebacterium coyleae Actinobacteria Rare + neg neg neg + neg neg neg w + neg neg + neg neg neg
Corynebacterium cystitidis Actinobacteria Rare + neg + neg + neg neg +
Corynebacterium diphtheriae Actinobacteria Non vr
Corynebacterium doosanense Actinobacteria Rare + + neg
Corynebacterium durum Actinobacteria Minor + + + + neg neg
Corynebacterium efficiens Actinobacteria Rare + + neg + + + neg
Corynebacterium falsenii Actinobacteria Rare + neg d neg + + neg d + neg d neg
Corynebacterium flavescens Actinobacteria Rare vr neg + + + + neg neg
Corynebacterium freneyi Actinobacteria Rare + neg neg + neg neg + + d(+) neg neg w neg neg neg
Corynebacterium genitalium Actinobacteria Rare + neg neg neg
Corynebacterium glaucum Actinobacteria Rare + neg + neg neg neg
Corynebacterium glucuronolyticum Actinobacteria Rare + + d d
Corynebacterium glutamicum Actinobacteria Rare + neg + neg + + neg neg
Corynebacterium ihumii Actinobacteria Rare + + neg + neg neg + + + + + + neg neg +
Corynebacterium jeddahense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Corynebacterium jeikeium Actinobacteria Rare + neg neg + + neg neg
Corynebacterium kroppenstedtii Actinobacteria Minor + neg + neg neg neg
Corynebacterium lipophiloflavum Actinobacteria Rare + neg neg
Corynebacterium lujinxingii Actinobacteria Rare +
Corynebacterium matruchotii Actinobacteria Unlikely + + + +
Corynebacterium minutissimum Actinobacteria Rare + neg + + neg neg neg neg
Corynebacterium mucifaciens Actinobacteria Rare + neg + neg neg + + neg neg vr neg neg neg
Corynebacterium neomassiliense Actinobacteria Rare + neg neg + neg neg neg neg neg neg neg neg neg neg neg neg
Corynebacterium otitidis Actinobacteria Rare + neg neg neg
Corynebacterium pacaense Actinobacteria Rare + neg neg + neg neg neg + + neg neg neg neg neg neg neg
Corynebacterium propinquum Actinobacteria Rare + neg neg neg neg neg
Corynebacterium provencense Actinobacteria Rare +
Corynebacterium pseudodiphtheriticum Actinobacteria Rare +
Corynebacterium pseudogenitalium Actinobacteria Rare + + d +
Corynebacterium pyruviciproducens Actinobacteria Rare + neg + w +
Corynebacterium riegelii Actinobacteria Rare + neg neg neg neg neg + + neg
Corynebacterium sanguinis Actinobacteria Rare + d(+) + neg neg
Corynebacterium simulans Actinobacteria Rare + neg neg + neg neg vr + + neg neg vr neg neg neg neg
Corynebacterium singulare Actinobacteria Rare + + neg neg
Corynebacterium stationis Actinobacteria Rare + + w neg + + + neg
Corynebacterium striatum Actinobacteria Rare + neg neg + vr + + neg neg neg neg
Corynebacterium suicordis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Corynebacterium sundsvallense Actinobacteria Rare + neg + neg + neg neg neg
Corynebacterium tuberculostearicum Actinobacteria Rare + neg + + vr + + neg neg
Corynebacterium ulcerans Actinobacteria Rare + + + + neg
Corynebacterium urealyticum Actinobacteria Rare + neg neg neg neg
Corynebacterium ureicelerivorans Actinobacteria Rare + neg + w w
Corynebacterium urinapleomorphum Actinobacteria Rare + neg
Corynebacterium variabile Actinobacteria Unlikely + neg neg + neg neg neg vr + neg neg + neg neg neg neg
Corynebacterium wankanglinii Actinobacteria Rare +
Corynebacterium xerosis Actinobacteria Rare + neg neg d(neg) neg + + d(+) neg neg + neg neg neg
Crassaminicella thermophila Firmicutes Unlikely +
Criibacterium bergeronii Firmicutes Rare vr
Cronobacter condimenti Proteobacteria Unlikely neg + + + + + + + + + +
Cronobacter muytjensii Proteobacteria Rare neg + + + + +
Cronobacter sakazakii Proteobacteria Minor neg + + + + +
Cronobacter turicensis Proteobacteria Rare neg + + + + + +
Cruoricaptor ignavus Bacteroidetes Rare neg neg neg neg
Cryptobacterium curtum Actinobacteria Minor +
Culturomica massiliensis Bacteroidetes Rare neg
Cupriavidus metallidurans Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Curtobacterium flaccumfaciens Actinobacteria Unlikely + neg neg
Cutibacterium acnes Actinobacteria Moderate + neg + vr neg neg
Cutibacterium acnes subsp. defendens Actinobacteria Rare + neg d(+)
Cutibacterium avidum Actinobacteria Rare + neg + + + + neg neg
Cutibacterium granulosum Actinobacteria Minor +
Cytophaga hutchinsonii Bacteroidetes Rare neg
Dakarella massiliensis Proteobacteria Rare neg neg + + +
Dakotella fusiforme Firmicutes Rare +
Dehalobacter restrictus Firmicutes Non neg
Dehalobacterium formicoaceticum Firmicutes Unlikely +
Dehalococcoides mccartyi Chloroflexi Unlikely unk
Deinococcus aquaticus Deinococcus-Thermus Unlikely neg
Deinococcus caeni Deinococcus-Thermus Unlikely neg
Deinococcus geothermalis Deinococcus-Thermus Non +
Deinococcus proteolyticus Deinococcus-Thermus Unlikely + + +
Deinococcus reticulitermitis Deinococcus-Thermus Unlikely neg +
Deinococcus wulumuqiensis Deinococcus-Thermus Unlikely + neg
Delftia acidovorans Proteobacteria Rare neg neg
Delftia lacustris Proteobacteria Unlikely neg
Delftia tsuruhatensis Proteobacteria Rare neg
Dellaglioa algida Firmicutes Rare + + neg + neg + + + neg + neg neg d neg
Denitrobacterium detoxificans Actinobacteria Rare +
Dermabacter hominis Actinobacteria Rare + neg neg + neg neg + + + d neg + neg vr neg
Dermacoccus barathri Actinobacteria Non + neg neg neg neg neg neg neg
Dermacoccus nishinomiyaensis Actinobacteria Rare + neg neg neg
Desemzia incerta Firmicutes Rare + neg + neg + + neg +
Desnuesiella massiliensis Firmicutes Rare + neg + + + + neg
Desulfitobacterium dichloroeliminans Firmicutes Unlikely +
Desulfitobacterium hafniense Firmicutes Minor neg neg neg neg neg neg
Desulfococcus multivorans Proteobacteria Rare neg
Desulfocurvibacter africanus Proteobacteria Unlikely neg
Desulfofarcimen acetoxidans Firmicutes Unlikely neg
Desulfomicrobium baculatum Proteobacteria Unlikely neg
Desulfomicrobium orale Proteobacteria Unlikely neg
Desulforamulus reducens Firmicutes Unlikely +
Desulforudis audaxviator Firmicutes Unlikely +
Desulfoscipio gibsoniae Firmicutes Rare neg
Desulfosporosinus youngiae Firmicutes Rare neg
Desulfotomaculum ruminis Firmicutes Unlikely +
Desulfovibrio desulfuricans Proteobacteria Minor neg
Desulfovibrio diazotrophicus Proteobacteria Rare neg
Desulfovibrio fairfieldensis Proteobacteria Minor neg
Desulfovibrio intestinalis Proteobacteria Rare neg
Desulfovibrio legallii Proteobacteria Rare +
Desulfovibrio longreachensis Proteobacteria Rare neg
Desulfovibrio piger Proteobacteria Moderate neg
Desulfovibrio trichonymphae Proteobacteria Non unk
Desulfovibrio vulgaris Proteobacteria Rare neg
Desulfurispirillum indicum Chrysiogenetes Unlikely neg
Desulfurobacterium thermolithotrophum Aquificae Non neg
Devosia chinhatensis Proteobacteria Rare neg
Devosia limi Proteobacteria Unlikely neg neg
Devosia riboflavina Proteobacteria Unlikely neg + neg neg neg neg
Dialister hominis Firmicutes Rare neg
Dialister invisus Firmicutes Moderate neg neg neg neg neg neg neg neg
Dialister massiliensis Firmicutes Rare neg neg neg
Dialister micraerophilus Firmicutes Rare neg
Dialister pneumosintes Firmicutes Minor neg neg
Dialister propionicifaciens Firmicutes Rare neg
Dialister succinatiphilus Firmicutes Minor neg
Dielma fastidiosa Firmicutes Minor neg neg neg neg neg neg
Dietzia cercidiphylli Actinobacteria Unlikely +
Dietzia cinnamea Actinobacteria Rare + neg neg neg neg neg neg
Dietzia kunjamensis Actinobacteria Unlikely + neg neg neg neg neg neg neg
Dietzia maris Actinobacteria Rare + neg + neg + neg neg neg neg
Dietzia natronolimnaea Actinobacteria Rare + neg neg neg
Dolosigranulum pigrum Firmicutes Unlikely + d + + + + +
Dorea faecis Firmicutes Minor
Dorea formicigenerans Firmicutes Widespread + + + + neg neg neg
Dorea hylemonae Firmicutes Rare
Dorea longicatena Firmicutes Widespread + + neg + neg + + neg w neg neg neg neg + neg
Dorea phocaeensis Firmicutes Rare neg neg neg + neg neg neg neg neg neg neg neg neg neg neg neg
Dorea scindens Firmicutes Rare
Drancourtella massiliensis Firmicutes Rare + +
Dubosiella newyorkensis Firmicutes Rare +
Duncaniella dubosii Bacteroidetes Unlikely neg neg neg neg neg neg
Duncaniella muris Bacteroidetes Rare neg + + + neg +
Duodenibacillus massiliensis Proteobacteria Minor +
Dyadobacter beijingensis Bacteroidetes Unlikely neg neg neg + neg + neg
Dyadobacter fermentans Bacteroidetes Unlikely neg + + + +
Dysgonomonas capnocytophagoides Bacteroidetes Rare neg + + +
Dysgonomonas gadei Bacteroidetes Rare neg + + + + + w(+) +
Dysgonomonas massiliensis Bacteroidetes Rare neg + + + + + + +
Dysgonomonas mossii Bacteroidetes Rare neg + + + + +
Dysosmobacter welbionis Firmicutes Moderate neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Edwardsiella tarda Proteobacteria Minor neg neg neg + + + + neg neg neg neg neg
Eggerthella guodeyinii Actinobacteria Rare +
Eggerthella lenta Actinobacteria Widespread + neg neg neg neg neg neg neg
Eggerthella sinensis Actinobacteria Rare + neg neg neg neg
Eggerthella timonensis Actinobacteria Rare + + + + + + + + + + +
Eggerthia catenaformis Firmicutes Minor + neg + + + + neg neg neg
Eikenella corrodens Proteobacteria Rare neg neg neg neg neg neg neg neg
Eisenbergiella massiliensis Firmicutes Moderate neg
Eisenbergiella tayi Firmicutes Moderate neg neg neg neg neg
Elizabethkingia meningoseptica Bacteroidetes Unlikely neg neg w(+) neg w(+) w(+) neg neg
Elizabethkingia miricola Bacteroidetes Non neg neg + + neg
Ellagibacter isourolithinifaciens Actinobacteria Rare +
Elusimicrobium minutum Elusimicrobia Unlikely neg neg neg + neg neg + + neg neg w neg neg neg neg
Emergencia timonensis Firmicutes Minor +
Empedobacter brevis Bacteroidetes Rare neg neg neg + neg neg
Empedobacter falsenii Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Enhydrobacter aerosaccus Proteobacteria Rare neg +
Enorma massiliensis Actinobacteria Minor +
Enorma phocaeensis Actinobacteria Rare neg
Enorma timonensis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Ensifer adhaerens Proteobacteria Unlikely neg neg
Enterobacter asburiae Proteobacteria Minor neg + + + + + neg +
Enterobacter cancerogenus Proteobacteria Minor neg + + + + neg +
Enterobacter cloacae Proteobacteria Moderate neg + + + +
Enterobacter cloacae subsp. dissolvens Proteobacteria Rare neg
Enterobacter himalayensis Proteobacteria Minor
Enterobacter hormaechei subsp. hormaechei Proteobacteria Minor neg + + d d vr +
Enterobacter hormaechei subsp. steigerwaltii Proteobacteria Rare neg + + + d(+) vr +
Enterobacter hormaechei subsp. xiangfangensis Proteobacteria Rare neg + neg + neg + + + + + + + neg neg +
Enterobacter kobei Proteobacteria Rare neg + neg + neg neg + + + neg + + neg + neg
Enterobacter ludwigii Proteobacteria Rare neg + d neg
Enterobacter massiliensis Proteobacteria Rare neg neg neg neg + + + + w(+) neg neg neg neg
Enterobacter mori Proteobacteria Rare neg
Enterobacter roggenkampii Proteobacteria Rare neg
Enterobacter soli Proteobacteria Rare neg + + +
Enterobacter timonensis Proteobacteria Rare neg
Enterocloster aldenensis Firmicutes Minor + vr + + neg +
Enterocloster asparagiformis Firmicutes Moderate + + neg
Enterocloster bolteae Firmicutes Widespread + + + + + neg +
Enterocloster citroniae Firmicutes Moderate + vr + + + +
Enterocloster clostridioformis Firmicutes Widespread + + + + + + vr vr neg +
Enterocloster lavalensis Firmicutes Minor + w + + + + neg w w
Enterococcus asini Firmicutes Rare + neg neg neg + neg neg + + + neg w neg neg neg + neg
Enterococcus avium Firmicutes Minor + d + + neg neg + + + + d + + + neg vr
Enterococcus burkinafasonensis Firmicutes Rare + + neg + neg neg + + + neg + + neg neg neg neg
Enterococcus caccae Firmicutes Rare + neg + neg + neg neg + + + d(+) + neg d(+) + neg
Enterococcus canintestini Firmicutes Rare + neg neg + neg neg + + + d(neg) neg + neg + neg neg
Enterococcus canis Firmicutes Rare + + d + neg neg + + + neg neg + neg neg d neg
Enterococcus casseliflavus Firmicutes Moderate + neg neg neg + neg neg + + + neg vr + neg d + neg
Enterococcus cecorum Firmicutes Rare + neg neg neg + neg neg + + neg neg neg + neg + neg neg
Enterococcus columbae Firmicutes Rare + + neg + neg neg + + + neg d + neg d + neg
Enterococcus devriesei Firmicutes Moderate + d d + neg neg + + + d d + d d neg neg
Enterococcus diestrammenae Firmicutes Rare + + neg + neg neg + + + neg neg + neg neg + neg
Enterococcus dispar Firmicutes Rare + neg neg neg + neg neg + + + neg + neg neg neg neg
Enterococcus durans Firmicutes Moderate + neg neg neg + neg neg + + + neg vr + neg + neg neg
Enterococcus eurekensis Firmicutes Rare + d + + + + d neg +
Enterococcus faecalis Firmicutes Widespread + vr + neg + neg neg + + + neg vr + neg vr neg neg
Enterococcus faecium Firmicutes Widespread + neg + neg + neg neg + + + neg vr + neg + vr neg
Enterococcus gallinarum Firmicutes Rare + + + neg neg + + + neg neg + neg vr neg neg
Enterococcus gilvus Firmicutes Rare + neg + + neg neg
Enterococcus haemoperoxidus Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg neg neg
Enterococcus hermanniensis Firmicutes Rare + neg d + neg neg neg + + neg d + neg neg neg neg
Enterococcus hirae Firmicutes Minor + neg + neg + neg neg + + + neg vr + neg vr + neg
Enterococcus italicus Firmicutes Rare + neg neg + neg neg + + + neg neg neg neg d neg neg
Enterococcus lactis Firmicutes Rare + + neg + neg neg + + + neg neg + neg + neg neg
Enterococcus malodoratus Firmicutes Rare + neg neg + neg neg + + + neg + + + + vr vr
Enterococcus massiliensis Firmicutes Rare + + + + + neg +
Enterococcus mediterraneensis Firmicutes Rare + + neg + neg neg + + + neg neg + neg neg + neg
Enterococcus moraviensis Firmicutes Rare + + neg + neg neg + + + neg neg + d(neg) + neg neg
Enterococcus mundtii Firmicutes Rare + + neg + neg neg + + + neg d(+) + vr neg + neg
Enterococcus pallens Firmicutes Rare + + neg neg neg + + + neg neg
Enterococcus phoeniculicola Firmicutes Rare + neg vr neg + neg neg neg + + + + w vr + neg
Enterococcus pseudoavium Firmicutes Rare + neg neg neg + + + + neg vr d neg neg
Enterococcus raffinosus Firmicutes Rare + + + + + + + +
Enterococcus saccharolyticus Firmicutes Rare + neg neg + neg neg + + + neg neg + d(neg) neg neg neg
Enterococcus saigonensis Firmicutes Unlikely + neg neg + neg neg + + + neg neg + neg + neg neg
Enterococcus sulfureus Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg neg
Enterococcus thailandicus Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg neg neg
Enterococcus timonensis Firmicutes Rare + neg neg + neg neg + + + neg neg neg neg neg neg neg
Enterococcus villorum Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg d neg
Enteroscipio rubneri Actinobacteria Rare + neg neg neg neg neg
Enterovibrio nigricans Proteobacteria Unlikely neg neg + + + neg neg neg
Ereboglobus luteus Verrucomicrobia Unlikely neg
Erwinia billingiae Proteobacteria Unlikely neg + neg + neg neg + + + neg + + neg neg + neg
Erwinia tasmaniensis Proteobacteria Unlikely neg +
Erwinia teleogrylli Proteobacteria Rare neg + neg + neg neg + + + neg + + + neg + neg
Erysipelatoclostridium ramosum Firmicutes Widespread + neg neg + neg neg + + + d d neg neg neg neg
Erysipelatoclostridium saccharogumia Firmicutes Minor
Erysipelatoclostridium spiroforme Firmicutes Minor
Erysipelothrix larvae Firmicutes Rare +
Escherichia albertii Proteobacteria Minor neg + + neg neg
Escherichia coli Proteobacteria Widespread neg + vr + + neg + + + d(+) + + + neg
Escherichia dysenteriae Proteobacteria Rare
Escherichia fergusonii Proteobacteria Minor neg + + + + + + +
Escherichia marmotae Proteobacteria Unlikely neg + + + + neg + + + neg + neg neg + neg
Escherichia ruysiae Proteobacteria Rare neg + neg
Ethanoligenens harbinense Firmicutes Rare + neg + neg neg + + + neg neg + neg neg
Eubacterium barkeri Firmicutes Rare + neg + neg + neg neg + neg
Eubacterium biforme Firmicutes Moderate + neg neg + + + neg neg neg
Eubacterium brachy Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium callanderi Firmicutes Minor + neg
Eubacterium cellulosolvens Firmicutes Minor + neg neg + + + neg neg neg neg neg
Eubacterium coprostanoligenes Firmicutes Minor + w w w w
Eubacterium dolichum Firmicutes Moderate + neg neg neg neg neg neg
Eubacterium infirmum Firmicutes Rare + neg neg neg neg neg
Eubacterium limosum Firmicutes Moderate + d(+) + d(neg) + neg neg + neg d
Eubacterium maltosivorans Firmicutes Rare + + neg
Eubacterium multiforme Firmicutes Rare + neg neg w(+) d w(+) w(+) neg neg neg
Eubacterium nodatum Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Eubacterium oxidoreducens Firmicutes Rare +
Eubacterium plexicaudatum Firmicutes Rare + + + + + + d(+) neg +
Eubacterium pyruvativorans Firmicutes Rare + neg neg neg
Eubacterium ramulus Firmicutes Moderate + neg neg + + + neg neg neg neg neg
Eubacterium rectale Firmicutes Widespread + w(+) + + d(+) neg neg +
Eubacterium ruminantium Firmicutes Rare + w(+) w(+) + neg neg neg
Eubacterium saphenum Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium siraeum Firmicutes Widespread + neg neg neg neg neg neg
Eubacterium sulci Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Eubacterium tenue Firmicutes Minor + neg neg w(+) neg neg neg
Eubacterium uniforme Firmicutes Rare + + d(neg) + + neg neg neg +
Eubacterium ventriosum Firmicutes Widespread + neg neg + + w + neg d(+) neg neg
Eubacterium xylanophilum Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium yurii Firmicutes Rare + neg neg neg neg
Ewingella americana Proteobacteria Rare neg neg + + neg neg
Exiguobacterium aurantiacum Firmicutes Rare + neg d neg + + neg neg neg neg neg neg
Exiguobacterium marinum Firmicutes Rare vr neg + + + + neg + neg
Exiguobacterium mexicanum Firmicutes Rare + neg neg + neg neg neg + neg neg neg + neg neg + neg
Exiguobacterium undae Firmicutes Rare + neg neg + neg + + + neg neg + neg neg neg neg
Ezakiella coagulans Bacteroidetes Minor neg neg neg neg neg neg neg neg
Ezakiella massiliensis Bacteroidetes Rare +
Ezakiella peruensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Facklamia hominis Firmicutes Rare + neg neg neg neg neg neg neg
Facklamia languida Firmicutes Rare + neg + neg neg
Faecalibacillus faecis Firmicutes Rare + neg w w neg neg
Faecalibacillus intestinalis Firmicutes Rare + neg w neg neg neg
Faecalibacterium prausnitzii Firmicutes Widespread neg neg + + neg neg neg neg
Faecalibaculum rodentium Firmicutes Rare + +
Faecalicatena contorta Firmicutes Minor + + + + + d + neg +
Faecalicatena faecis Firmicutes Moderate
Faecalicatena fissicatena Firmicutes Minor + + + + + + +
Faecalicatena glycyrrhizinilyticum Firmicutes Minor
Faecalicatena gnavus Firmicutes Moderate
Faecalicatena lactaris Firmicutes Moderate
Faecalicatena orotica Firmicutes Minor + + + + + + + vr +
Faecalicatena torques Firmicutes Moderate
Faecalicoccus pleomorphus Firmicutes Minor + neg + neg + d(+) neg
Faecalimonas umbilicata Firmicutes Rare + neg + neg neg +
Faecalitalea cylindroides Firmicutes Widespread + neg + neg + + neg neg neg neg
Fannyhessea vaginae Actinobacteria Minor + neg
Fastidiosipila sanguinis Firmicutes Rare +
Fenollaria massiliensis Firmicutes Minor neg
Fenollaria timonensis Firmicutes Rare neg
Fermentimonas caenicola Bacteroidetes Rare neg neg
Ferrimonas balearica Proteobacteria Rare neg
Fibrobacter succinogenes Fibrobacteres Unlikely neg neg neg neg neg + neg neg neg neg
Fictibacillus arsenicus Firmicutes Unlikely + neg neg neg neg
Filifactor alocis Firmicutes Minor neg neg neg neg neg neg neg neg neg neg
Filifactor villosus Firmicutes Unlikely + neg neg neg neg neg
Finegoldia magna Firmicutes Widespread + neg neg w neg neg neg neg neg
Flaviflexus massiliensis Actinobacteria Rare +
Flavobacterium banpakuense Bacteroidetes Unlikely neg neg
Flavobacterium caeni Bacteroidetes Non neg neg
Flavobacterium cheniae Bacteroidetes Rare neg neg
Flavobacterium daejeonense Bacteroidetes Unlikely neg + + + + + +
Flavobacterium lindanitolerans Bacteroidetes Rare neg neg
Flavobacterium oncorhynchi Bacteroidetes Unlikely neg neg
Flavobacterium sakaeratica Bacteroidetes Rare neg
Flavonifractor plautii Firmicutes Widespread vr neg neg neg neg neg neg neg neg
Flexispira rappini Proteobacteria Rare neg neg
Flintibacter butyricus Firmicutes Rare neg neg neg neg neg neg
Fournierella massiliensis Firmicutes Moderate neg neg neg + neg neg + + + neg neg neg neg neg neg
Francisella tularensis Proteobacteria Non neg +
Franconibacter pulveris Proteobacteria Rare neg + + +
Fredinandcohnia humi Firmicutes Non + neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Fretibacterium fastidiosum Synergistetes Rare neg neg neg neg
Fructilactobacillus florum Firmicutes Unlikely + neg neg + neg neg + neg neg neg neg neg neg
Fructilactobacillus fructivorans Firmicutes Unlikely + neg + neg + d neg d neg
Fructilactobacillus sanfranciscensis Firmicutes Rare + neg neg + + neg neg neg neg neg
Fucophilus fucoidanolyticus Verrucomicrobia Rare neg
Fundidesulfovibrio putealis Proteobacteria Rare neg
Furfurilactobacillus rossiae Firmicutes Unlikely + + neg + neg neg w + w d(+) neg + neg neg + neg
Fusicatenibacter saccharivorans Firmicutes Moderate + + + + + +
Fusobacterium canifelinum Fusobacteria Rare neg w d(w) neg
Fusobacterium gonidiaformans Fusobacteria Minor neg neg
Fusobacterium massiliense Fusobacteria Rare neg + neg neg neg +
Fusobacterium mortiferum Fusobacteria Moderate neg + + neg
Fusobacterium naviforme Fusobacteria Rare neg
Fusobacterium necrogenes Fusobacteria Rare neg
Fusobacterium necrophorum Fusobacteria Minor neg neg
Fusobacterium necrophorum subsp. funduliforme Fusobacteria Rare neg neg w neg w neg neg
Fusobacterium nucleatum Fusobacteria Minor neg neg neg neg neg neg neg neg
Fusobacterium nucleatum subsp. animalis Fusobacteria Rare neg neg w neg neg
Fusobacterium nucleatum subsp. nucleatum Fusobacteria Minor neg neg w neg neg neg neg
Fusobacterium nucleatum subsp. polymorphum Fusobacteria Rare neg neg w neg neg neg neg
Fusobacterium nucleatum subsp. vincentii Fusobacteria Rare neg neg w neg neg neg neg
Fusobacterium perfoetens Fusobacteria Rare neg neg w w + w neg neg neg
Fusobacterium periodonticum Fusobacteria Minor neg neg + + + neg neg neg neg
Fusobacterium pseudoperiodonticum Fusobacteria Unlikely neg d(+)
Fusobacterium russii Fusobacteria Minor neg neg
Fusobacterium ulcerans Fusobacteria Rare neg neg neg + d neg
Fusobacterium varium Fusobacteria Moderate neg neg + + + + neg neg
Gabonia massiliensis Bacteroidetes Rare neg neg neg + + neg neg
Gabonibacter massiliensis Bacteroidetes Minor neg neg neg + neg + +
Gabonibacter timonensis Bacteroidetes Rare +
Gallibacterium anatis Proteobacteria Rare neg neg neg + neg neg + + + neg + neg +
Gardnerella leopoldii Actinobacteria Unlikely neg
Gardnerella vaginalis Actinobacteria Minor neg + + + + + neg + vr
Gemella asaccharolytica Firmicutes Rare vr neg
Gemella haemolysans Firmicutes Minor + neg neg + + neg neg neg
Gemella morbillorum Firmicutes Minor + neg neg neg neg neg neg neg + w vr neg w neg vr neg
Gemella sanguinis Firmicutes Minor + neg neg neg + neg neg neg + neg neg neg neg neg neg neg
Gemmatimonas groenlandica Gemmatimonadetes Non neg
Gemmiger formicilis Firmicutes Moderate neg neg w d(neg) d(w) neg neg neg neg
Gemmiger variabile Firmicutes Moderate
Geobacillus stearothermophilus Firmicutes Unlikely + + d neg + neg neg + + + neg neg neg + neg neg
Geobacillus vulcani Firmicutes Unlikely + neg + + + + neg + +
Geodermatophilus obscurus Actinobacteria Non + + + + + + + +
Georgenia muralis Actinobacteria Rare + neg neg neg
Georgenia satyanarayanai Actinobacteria Unlikely +
Geosporobacter ferrireducens Firmicutes Unlikely neg
Gleimia europaea Actinobacteria Rare + neg + + + d neg d neg
Globicatella sulfidifaciens Firmicutes Rare vr + neg + neg neg neg + + neg neg neg neg + neg
Glutamicibacter arilaitensis Actinobacteria Unlikely + neg neg neg
Glutamicibacter protophormiae Actinobacteria Rare + neg neg
Gorbachella massiliensis Firmicutes Rare neg
Gordonia alkanivorans Actinobacteria Rare + + neg
Gordonia rubripertincta Actinobacteria Unlikely + + neg neg
Gordonia terrae Actinobacteria Rare + neg neg + + + neg
Gordonibacter massiliensis Actinobacteria Rare + + neg + neg neg + + neg neg neg neg neg neg + neg
Gordonibacter pamelaeae Actinobacteria Moderate + neg neg neg neg neg
Gordonibacter urolithinfaciens Actinobacteria Minor + neg neg neg neg neg
Gorillibacterium timonense Firmicutes Rare neg
Gottschalkia acidurici Firmicutes Unlikely +
Gracilibacillus dipsosauri Firmicutes Rare + w
Gracilibacillus massiliensis Firmicutes Rare + neg neg neg neg neg
Gracilibacillus phocaeensis Firmicutes Rare +
Gracilibacillus thailandensis Firmicutes Non + + + + + + + + +
Gracilibacillus timonensis Firmicutes Rare +
Granulicatella adiacens Firmicutes Minor + neg neg + neg + neg
Granulicatella elegans Firmicutes Minor + neg neg + + neg neg neg
Granulicatella para-adiacens Firmicutes Rare + + neg neg
Grimontia hollisae Proteobacteria Rare neg + neg + + + neg
Gulosibacter bifidus Actinobacteria Unlikely + neg neg neg neg
Haemophilus ducreyi Proteobacteria Rare neg neg neg neg w neg neg neg neg neg
Haemophilus haemolyticus Proteobacteria Minor neg neg w + + neg neg + neg d
Haemophilus influenzae Proteobacteria Minor neg neg neg + + neg neg + neg neg d(+)
Haemophilus parahaemolyticus Proteobacteria Minor neg neg + d + neg neg neg neg neg
Haemophilus parainfluenzae Proteobacteria Widespread neg neg + + + neg neg neg neg neg neg
Haemophilus paraphrohaemolyticus Proteobacteria Rare neg neg + d + + neg neg neg d
Haemophilus pittmaniae Proteobacteria Minor neg + + + + neg neg
Haemophilus quentini Proteobacteria Rare neg + + neg +
Haemophilus sputorum Proteobacteria Minor neg + vr + neg neg neg
Hafnia alvei Proteobacteria Minor neg + + + + +
Hafnia paralvei Proteobacteria Rare neg + d(+) + +
Hahella ganghwensis Proteobacteria Rare neg neg
Halanaerobaculum tunisiense Firmicutes Unlikely neg + + +
Halobacillus dabanensis Firmicutes Unlikely + + neg + +
Halobacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Halobacillus karajensis Firmicutes Non + neg + neg + + neg
Halobacillus massiliensis Firmicutes Unlikely +
Halobacillus salinus Firmicutes Rare + neg + w + + neg neg neg
Halobacillus trueperi Firmicutes Unlikely + + + + neg
Halobacteroides halobius Firmicutes Unlikely neg + + +
Haloferax alexandrinus Euryarchaeota Unlikely neg + + neg + neg + + +
Haloferax massiliensis Euryarchaeota Rare neg
Haloimpatiens massiliensis Firmicutes Rare + neg neg + + + + + + + + neg + + neg neg
Halomonas massiliensis Proteobacteria Rare neg
Halomonas muralis Proteobacteria Non neg
Halomonas salina Proteobacteria Non neg neg neg neg neg neg neg
Halomonas utahensis Proteobacteria Unlikely neg
Halopseudomonas bauzanensis Proteobacteria Unlikely neg neg neg neg
Halopseudomonas pelagia Proteobacteria Unlikely neg
Haploplasma axanthum Tenericutes Unlikely neg neg + + neg neg
Harryflintia acetispora Firmicutes Rare neg neg + + + + neg
Hathewaya histolytica Firmicutes Rare +
Hathewaya limosa Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Hathewaya massiliensis Firmicutes Rare + + + + + + + + + + + + + + +
Helcobacillus massiliensis Actinobacteria Rare + + neg + neg neg neg + neg neg neg neg neg neg + neg
Helcococcus sueciensis Firmicutes Rare + neg + w neg neg neg
Helicobacter bilis Proteobacteria Unlikely neg
Helicobacter canadensis Proteobacteria Unlikely neg
Helicobacter canis Proteobacteria Unlikely neg neg
Helicobacter cinaedi Proteobacteria Rare neg vr neg
Helicobacter felis Proteobacteria Non neg neg neg neg neg neg
Helicobacter fennelliae Proteobacteria Rare neg
Helicobacter heilmannii Proteobacteria Non neg
Helicobacter macacae Proteobacteria Unlikely neg
Helicobacter pametensis Proteobacteria Rare neg
Helicobacter pullorum Proteobacteria Minor neg neg
Helicobacter pylori Proteobacteria Non neg neg
Helicobacter rodentium Proteobacteria Rare neg
Helicobacter winghamensis Proteobacteria Rare neg
Heliomicrobium modesticaldum Firmicutes Unlikely neg
Herbaspirillum autotrophicum Proteobacteria Unlikely neg
Herbaspirillum huttiense Proteobacteria Rare neg + + + w neg neg neg + neg
Herbinix hemicellulosilytica Firmicutes Unlikely +
Herbinix luporum Firmicutes Unlikely +
Herminiimonas contaminans Proteobacteria Unlikely neg
Hespellia porcina Firmicutes Rare + +
Hespellia stercorisuis Firmicutes Rare + +
Heyndrickxia oleronia Firmicutes Unlikely neg neg neg + neg neg d + d neg neg d neg + neg neg
Heyndrickxia sporothermodurans Firmicutes Unlikely + neg neg w neg neg neg w d neg neg neg neg d neg neg
Histophilus somni Proteobacteria Rare neg neg neg neg + d neg neg neg
Holdemanella biformis Firmicutes Moderate + + + + neg +
Holdemania filiformis Firmicutes Moderate + neg + + neg neg neg neg
Holdemania massiliensis Firmicutes Minor + + + + + + +
Holophaga foetida Acidobacteria Non neg
Howardella ureilytica Firmicutes Rare +
Hugonella massiliensis Actinobacteria Rare + + neg neg neg neg neg neg + neg neg neg neg neg neg neg
Humisphaera borealis Planctomycetes Unlikely neg
Hungatella effluvii Firmicutes Minor + + + + +
Hungatella hathewayi Firmicutes Widespread + + + + + + + + +
Hungatella saccharolyticum Firmicutes Rare
Hungatella xylanolytica Firmicutes Rare neg + neg + + + +
Hydrogenibacillus schlegelii Firmicutes Unlikely vr neg neg
Hydrogenoanaerobacterium saccharovorans Firmicutes Rare neg vr neg + + neg + neg
Hydrogenophaga pseudoflava Proteobacteria Unlikely neg + + neg + + + neg +
Hydrogenovibrio crunogenus Proteobacteria Unlikely neg
Hymenobacter rigui Bacteroidetes Rare neg neg
Hymenobacter russus Bacteroidetes Unlikely neg neg
Hyphomicrobium facile Proteobacteria Rare neg
Ihubacter massiliensis Firmicutes Rare neg
Ihuprevotella massiliensis Bacteroidetes Rare neg
Ileibacterium valens Firmicutes Rare +
Inediibacterium massiliense Firmicutes Rare + neg + + neg neg neg
Intestinibacillus massiliensis Firmicutes Rare neg
Intestinibacter bartlettii Firmicutes Widespread + + + neg + neg
Intestinibaculum porci Firmicutes Unlikely + neg neg + neg + + neg neg neg neg neg neg neg neg
Intestinimonas butyriciproducens Firmicutes Moderate +
Intestinimonas gabonensis Firmicutes Rare neg
Intestinimonas massiliensis Firmicutes Moderate neg neg + w neg + + neg neg + neg + + + + +
Intestinimonas timonensis Firmicutes Rare neg
Isoptericola variabilis Actinobacteria Rare + + + + + +
Janibacter anophelis Actinobacteria Rare + neg neg neg neg
Janibacter hoylei Actinobacteria Non + neg neg neg neg neg neg neg
Janibacter limosus Actinobacteria Unlikely + neg neg neg + neg neg neg neg
Janibacter terrae Actinobacteria Rare + neg neg neg vr neg neg neg neg
Jeotgalibaca arthritidis Firmicutes Unlikely + neg neg + neg neg + + + neg neg neg neg neg + neg
Jeotgalibaca porci Firmicutes Unlikely + + neg + neg neg + + + neg neg + neg neg + neg
Jeotgalicoccus halotolerans Firmicutes Rare + + neg neg + neg + neg
Johnsonella ignava Firmicutes Rare neg neg neg neg neg neg neg neg
Jonquetella anthropi Synergistetes Rare neg
Kalamiella piersonii Proteobacteria Unlikely neg
Kallipyga gabonensis Firmicutes Rare + neg neg + neg neg
Kallipyga massiliensis Firmicutes Rare + w w neg w
Kandleria vitulina Firmicutes Rare + neg + + + + neg neg neg
Kerstersia gyiorum Proteobacteria Rare neg
Khelaifiella massiliensis Firmicutes Rare +
Kineothrix alysoides Firmicutes Rare neg
Kingella denitrificans Proteobacteria Unlikely neg neg neg + neg neg neg
Kingella kingae Proteobacteria Rare neg neg w + neg neg
Kingella oralis Proteobacteria Unlikely neg neg w neg
Kiritimatiella glycovorans Kiritimatiellaeota Unlikely neg
Klebsiella aerogenes Proteobacteria Moderate neg + + + + + +
Klebsiella grimontii Proteobacteria Minor neg +
Klebsiella michiganensis Proteobacteria Minor neg + + +
Klebsiella oxytoca Proteobacteria Moderate neg + + + +
Klebsiella pneumoniae Proteobacteria Widespread neg + + d + + + + + + d(neg) + neg
Klebsiella pneumoniae subsp. ozaenae Proteobacteria Rare neg +
Klebsiella pneumoniae subsp. rhinoscleromatis Proteobacteria Rare neg +
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria Minor neg + neg + + d(neg) + + + + + d neg + neg
Klebsiella quasivariicola Proteobacteria Minor
Klebsiella variicola Proteobacteria Minor neg + + +
Kluyvera ascorbata Proteobacteria Minor neg + + + + + + +
Kluyvera cryocrescens Proteobacteria Rare neg + + + + + +
Kluyvera georgiana Proteobacteria Rare neg + neg neg + + + neg + + d +
Kluyvera intermedia Proteobacteria Rare neg + + + +
Kocuria carniphila Actinobacteria Unlikely + neg + + neg neg neg
Kocuria marina Actinobacteria Rare + neg neg + neg neg neg neg
Kocuria palustris Actinobacteria Unlikely + neg neg + + + neg neg neg
Kocuria polaris Actinobacteria Unlikely + neg + + + neg + + +
Kocuria rhizophila Actinobacteria Unlikely + neg + neg + + neg neg
Kocuria rosea Actinobacteria Unlikely + neg + neg neg neg neg +
Kocuria salsicia Actinobacteria Unlikely + neg
Kocuria varians Actinobacteria Rare + neg + neg + neg neg +
Kosakonia cowanii Proteobacteria Minor neg + neg + neg neg + + + d + + neg neg + neg
Krasilnikoviella flava Actinobacteria Rare +
Kurthia gibsonii Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Kurthia massiliensis Firmicutes Rare +
Kurthia senegalensis Firmicutes Rare +
Kurthia sp. Dielmo Firmicutes Rare +
Kurthia zopfii Firmicutes Rare + neg neg neg
Kushneria sinocarnis Firmicutes Unlikely neg + + + + + neg + +
Kytococcus schroeteri Actinobacteria Rare + neg neg neg neg neg neg neg neg
Kytococcus sedentarius Actinobacteria Rare + neg neg neg neg neg neg
Labilithrix luteola Proteobacteria Non neg
Lachnoanaerobaculum orale Firmicutes Rare +
Lachnoanaerobaculum saburreum Firmicutes Rare + + + neg +
Lachnoanaerobaculum umeaense Firmicutes Rare + + + + +
Lachnobacterium bovis Firmicutes Rare + + + neg +
Lachnoclostridium bouchesdurhonense Firmicutes Rare neg
Lachnoclostridium edouardi Firmicutes Minor +
Lachnoclostridium massiliosenegalense Firmicutes Rare +
Lachnoclostridium pacaense Firmicutes Rare vr neg neg neg neg neg
Lachnoclostridium phocaeense Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Lachnoclostridium phytofermentans Firmicutes Minor neg
Lachnoclostridium touaregense Firmicutes Rare +
Lachnospira eligens Firmicutes Widespread + neg + d neg d(+) d(neg) neg neg neg
Lachnospira multipara Firmicutes Rare + neg + neg + w
Lachnospira pectinoschiza Firmicutes Minor + + neg
Lachnospira rogosae Firmicutes Moderate
Lacrimispora aerotolerans Firmicutes Rare neg + + + + + + d +
Lacrimispora amygdalina Firmicutes Rare +
Lacrimispora celerecrescens Firmicutes Rare + + + + + + + + w(+) +
Lacrimispora indolis Firmicutes Minor neg neg neg neg neg neg
Lacrimispora saccharolytica Firmicutes Moderate neg
Lacrimispora sphenoides Firmicutes Minor + + + + + d(+)
Lacticaseibacillus casei Firmicutes Rare + neg neg neg + d neg + + + neg neg + neg + neg neg
Lacticaseibacillus paracasei Firmicutes Minor + neg neg neg + neg neg + + + d(neg) neg d(+) d(neg) + neg neg
Lacticaseibacillus paracasei subsp. tolerans Firmicutes Unlikely + neg neg + neg neg + + + neg neg neg neg + neg neg
Lacticaseibacillus paragasseri Firmicutes Unlikely + neg neg neg + neg neg + + + neg neg neg neg + neg neg
Lacticaseibacillus rhamnosus Firmicutes Moderate + neg neg + neg neg + + + d + + d(+) vr neg neg
Lacticaseibacillus saniviri Firmicutes Unlikely + neg neg + neg neg + + + neg neg + neg + neg neg
Lacticaseibacillus sharpeae Firmicutes Unlikely + neg + + + + neg neg
Lacticaseibacillus zeae Firmicutes Unlikely + neg d + d neg + + + neg + + neg d neg neg
Lacticigenium naphtae Firmicutes Non vr + + + + +
Lactiplantibacillus paraplantarum Firmicutes Rare + d neg + neg neg + + + neg d + neg neg neg neg
Lactiplantibacillus pentosus Firmicutes Rare + neg + neg + neg neg + + + neg d(neg) + neg neg + neg
Lactiplantibacillus plantarum Firmicutes Moderate + d(+) neg + neg neg + + + d + neg neg neg neg
Lactiplantibacillus xiangfangensis Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg +
Lactobacillus acidophilus Firmicutes Widespread + neg neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus amylolyticus Firmicutes Unlikely + neg + + + + neg neg neg neg
Lactobacillus amylovorus Firmicutes Minor + neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus crispatus Firmicutes Moderate + neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus delbrueckii subsp. bulgaricus Firmicutes Rare + neg + neg + neg neg neg neg neg
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes Minor + neg neg + neg neg neg + + neg neg neg neg neg neg neg
Lactobacillus delbrueckii subsp. lactis Firmicutes Unlikely + neg d(neg) + neg neg neg neg
Lactobacillus equicursoris Firmicutes Rare + neg + + + + neg neg neg
Lactobacillus gasseri Firmicutes Moderate + neg neg neg + neg neg + + + neg neg neg neg + neg neg
Lactobacillus gigeriorum Firmicutes Unlikely + neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus hamsteri Firmicutes Rare + neg + + + + neg + neg
Lactobacillus helveticus Firmicutes Rare + neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus hominis Firmicutes Unlikely + neg neg + neg neg + + + neg neg neg neg neg neg
Lactobacillus iners Firmicutes Rare + neg neg neg vr neg neg neg + vr neg neg neg neg neg neg neg
Lactobacillus intestinalis Firmicutes Unlikely + neg + + + + neg neg d neg
Lactobacillus jensenii Firmicutes Unlikely + neg neg neg + neg neg neg + + neg neg vr neg neg neg neg
Lactobacillus johnsonii Firmicutes Minor + neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus kalixensis Firmicutes Minor + neg neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactobacillus kefiranofaciens Firmicutes Rare + neg neg + neg neg + + neg neg neg neg neg neg neg neg
Lactobacillus leichmannii Firmicutes Rare + neg + neg + neg neg neg
Lactobacillus pasteurii Firmicutes Unlikely + neg neg + neg neg neg + + neg neg + neg neg neg
Lactobacillus psittaci Firmicutes Unlikely + neg + neg neg neg
Lactobacillus rogosae Firmicutes Rare + neg + neg neg neg neg neg neg neg
Lactobacillus timonensis Firmicutes Unlikely + neg
Lactobacillus ultunensis Firmicutes Minor + neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactococcus cremoris Firmicutes Rare + neg neg neg + neg neg + + + neg neg neg neg neg neg neg
Lactococcus garvieae Firmicutes Minor + neg neg + neg neg + + + neg neg + neg vr neg neg
Lactococcus lactis subsp. lactis Firmicutes Widespread + neg neg neg + neg neg + + + neg neg + neg neg vr neg
Lactococcus petauri Firmicutes Rare + + + + + + + neg
Lactococcus plantarum Firmicutes Rare + neg neg + neg neg neg + + neg neg neg neg neg neg neg
Lactococcus raffinolactis Firmicutes Minor + d neg + neg neg + + + neg neg neg neg neg d(+) neg
Lactonifactor longoviformis Firmicutes Minor neg
Lacunisphaera limnophila Verrucomicrobia Unlikely neg
Lagierella massiliensis Firmicutes Rare + + + + + + + +
Lancefieldella parvula Actinobacteria Minor + neg + + + neg d(neg) d(neg)
Lancefieldella rimae Actinobacteria Minor + d + + + neg d(neg) neg
Lapidilactobacillus dextrinicus Firmicutes Non + neg + + + + neg neg neg neg neg
Laribacter hongkongensis Proteobacteria Rare neg neg
Lascolabacillus massiliensis Bacteroidetes Rare neg
Latilactobacillus curvatus Firmicutes Minor + neg neg neg + neg neg + + d neg neg + neg neg neg neg
Latilactobacillus sakei Firmicutes Minor + vr neg + neg neg + + + neg neg + neg neg neg neg
Latilactobacillus sakei subsp. carnosus Firmicutes Rare + d(neg) + + + + neg + neg
Lautropia mirabilis Proteobacteria Minor neg neg neg + d(neg) + neg neg neg neg
Lawsonella clevelandensis Actinobacteria Rare vr
Lawsonia intracellularis Proteobacteria Unlikely neg
Lawsonibacter asaccharolyticus Firmicutes Moderate + neg w neg neg neg
Leclercia adecarboxylata Proteobacteria Rare neg neg + neg neg + + + neg + + neg neg + neg
Lederbergia galactosidilyticus Firmicutes Rare + d neg + neg neg d + d neg d d neg neg d neg
Lederbergia lentus Firmicutes Unlikely + w neg w d neg w w w w w neg neg w neg
Legionella bozemanae Proteobacteria Non neg
Legionella pneumophila Proteobacteria Non neg
Lelliottia amnigena Proteobacteria Rare neg + + + + + + + + neg +
Lelliottia nimipressuralis Proteobacteria Rare neg + + + +
Leminorella grimontii Proteobacteria Rare neg + neg + neg neg +
Leminorella richardii Proteobacteria Rare neg + neg + neg neg +
Lentibacillus massiliensis Firmicutes Rare +
Lentibacillus timonensis Firmicutes Rare + neg neg neg neg neg + + neg neg neg neg neg neg neg neg
Lentilactobacillus buchneri subsp. buchneri Firmicutes Minor + vr + neg + neg neg + + neg neg neg + neg neg + neg
Lentilactobacillus diolivorans Firmicutes Unlikely + + neg + neg neg + + neg neg neg + neg neg + neg
Lentilactobacillus farraginis Firmicutes Unlikely + + + + + neg neg + neg
Lentilactobacillus hilgardii Firmicutes Rare + + neg + neg neg d + neg neg neg + neg neg + neg
Lentilactobacillus kefiri Firmicutes Non + + neg d(+) neg neg + + neg neg neg + neg neg neg neg
Lentilactobacillus kisonensis Firmicutes Unlikely + + neg neg neg neg neg neg neg neg neg + neg neg + neg
Lentilactobacillus otakiensis Firmicutes Unlikely + + neg + neg neg + + neg neg neg + neg neg neg neg
Lentilactobacillus parabuchneri Firmicutes Rare + neg + neg + neg neg + + neg neg neg + neg neg neg neg
Lentilactobacillus parafarraginis Firmicutes Unlikely + + + + + neg neg + neg
Lentilactobacillus senioris Firmicutes Unlikely + + neg + neg neg neg + d neg neg + neg neg + neg
Leptospira interrogans Spirochaetes Non neg
Leptotrichia amnionii Fusobacteria Rare neg neg
Leptotrichia buccalis Fusobacteria Rare neg neg neg + neg neg neg + + neg neg neg neg neg neg
Leptotrichia hofstadii Fusobacteria Rare neg +
Leptotrichia hongkongensis Fusobacteria Rare vr neg neg neg
Leptotrichia massiliensis Fusobacteria Rare +
Leptotrichia shahii Fusobacteria Rare neg neg
Leptotrichia wadei Fusobacteria Rare neg neg
Leucobacter aridicollis Actinobacteria Unlikely +
Leuconostoc carnosum Firmicutes Unlikely + neg neg + neg + d(+) neg neg d(neg) neg neg
Leuconostoc citreum Firmicutes Minor + + + neg + neg neg d(neg) + + neg neg neg neg neg neg neg
Leuconostoc gelidum Firmicutes Rare + + neg + neg neg neg + + neg neg d neg neg + neg
Leuconostoc gelidum subsp. gasicomitatum Firmicutes Non + + neg + neg neg d + + neg neg + neg neg + neg
Leuconostoc holzapfelii Firmicutes Rare + + neg + neg neg + + + neg neg neg neg neg neg
Leuconostoc inhae Firmicutes Unlikely + + neg + neg neg d + + neg neg + neg neg neg neg
Leuconostoc kimchii Firmicutes Rare + neg + + + + + neg + neg
Leuconostoc lactis Firmicutes Minor + neg d neg d(+) neg neg + + + neg neg neg neg neg neg neg
Leuconostoc mesenteroides subsp. cremoris Firmicutes Rare + + + + + + neg neg d neg
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes Minor + + + neg + neg neg + + + neg neg + neg neg vr neg
Leuconostoc pseudomesenteroides Firmicutes Unlikely + d(+) neg + neg neg d(+) + + neg neg + neg neg + neg
Levilactobacillus brevis Firmicutes Minor + vr + neg + neg neg d(+) + neg neg neg + neg neg + neg
Levilactobacillus brevis subsp. gravesensis Firmicutes Unlikely + + d + neg neg + d
Levilactobacillus namurensis Firmicutes Unlikely + neg neg + neg neg + + neg neg neg + neg neg neg
Levilactobacillus parabrevis Firmicutes Unlikely + + neg + neg neg d + neg neg neg + neg neg + neg
Levyella massiliensis Firmicutes Rare + neg + neg neg neg
Ligilactobacillus acidipiscis Firmicutes Unlikely + d neg + neg neg + + + neg d + neg neg
Ligilactobacillus agilis Firmicutes Rare + neg neg neg + neg neg + + + neg neg + vr neg neg
Ligilactobacillus animalis Firmicutes Minor + neg neg d + neg neg + + + neg neg d neg neg neg neg
Ligilactobacillus ceti Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg + neg neg neg neg
Ligilactobacillus equi Firmicutes Unlikely + d(neg) neg + neg neg + + d neg d d neg neg d(neg) neg
Ligilactobacillus murinus Firmicutes Rare + w neg w neg
Ligilactobacillus pobuzihii Firmicutes Unlikely + + neg + neg neg + + + neg + neg neg
Ligilactobacillus ruminis Firmicutes Widespread + neg neg + neg neg + + + neg neg neg neg neg neg neg
Ligilactobacillus salivarius Firmicutes Widespread + neg neg neg + neg neg + + + neg vr neg neg neg neg neg
Limnobacter thiooxidans Proteobacteria Unlikely neg
Limnochorda pilosa Firmicutes Unlikely neg
Limosilactobacillus antri Firmicutes Rare + + + neg + neg neg + + neg neg neg + neg neg d neg
Limosilactobacillus caccae Firmicutes Rare + + + + + + +
Limosilactobacillus coleohominis Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg + neg neg neg neg
Limosilactobacillus fermentum Firmicutes Widespread + neg vr + neg neg + vr w(+) neg neg + neg neg vr neg
Limosilactobacillus frumenti Firmicutes Non + neg d + + + + neg d +
Limosilactobacillus gastricus Firmicutes Unlikely + neg d neg + neg neg + + + neg neg d neg neg neg neg
Limosilactobacillus ingluviei Firmicutes Non + + neg + neg neg neg d d neg neg + neg neg + neg
Limosilactobacillus mucosae Firmicutes Rare + d vr neg neg neg d + neg neg neg + neg neg + neg
Limosilactobacillus oris Firmicutes Minor + + + neg + neg neg + + d neg neg + neg neg + neg
Limosilactobacillus reuteri Firmicutes Minor + + + neg vr neg neg + + vr neg neg + neg neg neg neg
Limosilactobacillus vaginalis Firmicutes Rare + neg neg neg + neg neg + + + neg neg d(+) neg neg neg neg
Limosilactobacillus walteri Firmicutes Rare + w + + w w
Liquorilactobacillus mali Firmicutes Unlikely + + + neg d d d +
Liquorilactobacillus satsumensis Firmicutes Non + neg + d + + neg neg neg
Liquorilactobacillus vini Firmicutes Unlikely + + neg + neg neg neg + + neg neg + neg neg neg neg
Listeria floridensis Firmicutes Rare + + neg + neg + + + neg + neg neg neg +
Listeria grayi Firmicutes Rare + neg neg + neg neg + + d neg d(neg) + neg neg + neg
Listeria innocua Firmicutes Rare + neg neg d neg neg neg + d neg d neg neg d d neg
Listeria ivanovii Firmicutes Rare + d neg + neg neg neg + + neg neg d neg neg + neg
Listeria marthii Firmicutes Rare + + neg neg neg neg neg
Listeria monocytogenes Firmicutes Rare + neg neg neg + neg neg d(neg) + + neg + neg neg neg neg neg
Listeria seeligeri Firmicutes Rare + neg neg + neg neg neg neg vr
Listeria welshimeri Firmicutes Rare + neg neg + neg neg neg + + neg d neg neg + + neg
Litchfieldia alkalitelluris Firmicutes Rare + neg neg neg neg neg neg neg neg
Loigolactobacillus bifermentans Firmicutes Unlikely + neg + + + + + + neg
Loigolactobacillus coryniformis Firmicutes Minor + neg neg + neg neg + + + neg d neg neg neg neg neg
Loigolactobacillus coryniformis subsp. torquens Firmicutes Unlikely + neg neg neg
Longicatena caecimuris Firmicutes Rare + +
Lutispora thermophila Firmicutes Unlikely neg
Luxibacter massiliensis Firmicutes Rare + + neg + neg + + + + neg + + neg + + neg
Lysinibacillus boronitolerans Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg + neg
Lysinibacillus fusiformis Firmicutes Rare vr neg neg neg neg neg
Lysinibacillus macroides Firmicutes Unlikely vr neg
Lysinibacillus meyeri Firmicutes Unlikely + neg neg + neg neg neg neg neg neg neg neg neg neg neg neg
Lysinibacillus sphaericus Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Lysinibacillus varians Firmicutes Rare +
Lysinibacillus xylanilyticus Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Lysobacter soli Proteobacteria Rare neg + + + neg
Macellibacteroides fermentans Bacteroidetes Rare + + + + + +
Macrococcus caseolyticus Firmicutes Unlikely + neg + + neg
Mageeibacillus indolicus Firmicutes Rare vr neg neg neg
Mahella australiensis Firmicutes Unlikely + + + + + + +
Mailhella massiliensis Proteobacteria Rare neg
Mameliella alba Proteobacteria Unlikely neg neg neg neg
Mammaliicoccus fleurettii Firmicutes Rare + + d + neg neg + + d
Mammaliicoccus lentus Firmicutes Rare + + w + w + + w neg w + neg neg neg
Mammaliicoccus sciuri Firmicutes Rare + vr + + + neg + neg
Mammaliicoccus vitulinus Firmicutes Unlikely + neg neg neg + neg vr neg vr neg neg
Mannheimia granulomatis Proteobacteria Rare neg neg + + neg neg neg d
Mannheimia haemolytica Proteobacteria Rare neg neg + neg neg +
Mannheimia succiniciproducens Proteobacteria Rare neg
Marasmitruncus massiliensis Firmicutes Rare +
Marseilla massiliensis Bacteroidetes Rare neg
Marseillibacter massiliensis Firmicutes Rare neg
Marvinbryantia formatexigens Firmicutes Moderate + +
Massilia aurea Proteobacteria Unlikely neg neg
Massilia brevitalea Proteobacteria Non neg
Massilia haematophila Proteobacteria Rare neg neg
Massilia norwichensis Proteobacteria Unlikely neg
Massilia timonae Proteobacteria Non neg neg + w neg neg neg
Massilia varians Proteobacteria Unlikely neg neg
Massilibacillus massiliensis Firmicutes Rare +
Massilibacterium senegalense Firmicutes Rare neg neg neg neg + neg neg neg neg + neg neg neg neg neg neg neg
Massilicoli timonensis Firmicutes Rare neg + neg + neg neg neg + + neg neg + neg + +
Massiliimalia massiliensis Firmicutes Rare neg neg + + neg + neg neg
Massiliimalia timonensis Firmicutes Minor + neg neg neg neg neg neg neg
Massilimicrobiota timonensis Firmicutes Moderate neg neg neg + + + + + + + neg neg neg + neg +
Massilioclostridium coli Firmicutes Moderate neg neg neg neg neg neg +
Massiliprevotella massiliensis Bacteroidetes Rare neg
Massilistercora timonensis Firmicutes Rare neg d d + neg neg d + d neg d d d neg d d
Mediterranea massiliensis Bacteroidetes Rare neg neg neg + + neg
Mediterraneibacter faecis Firmicutes Minor + neg + neg neg neg
Mediterraneibacter glycyrrhizinilyticus Firmicutes Minor + neg + + neg + +
Mediterraneibacter massiliensis Firmicutes Rare + + + + neg neg + + + neg neg + neg + +
Megalodesulfovibrio gigas Proteobacteria Unlikely neg
Megamonas funiformis Firmicutes Minor neg + + + + neg d +
Megamonas hypermegale Firmicutes Moderate neg + + + + d d +
Megamonas rupellensis Firmicutes Rare neg + + + neg +
Megasphaera cerevisiae Firmicutes Rare neg d + neg neg neg neg
Megasphaera elsdenii Firmicutes Moderate neg neg + neg + neg neg neg
Megasphaera indica Firmicutes Rare neg
Megasphaera massiliensis Firmicutes Rare neg + w + + + + + + + +
Megasphaera micronuciformis Firmicutes Minor neg neg neg neg neg neg neg neg neg
Megasphaera stantonii Firmicutes Rare neg
Meiothermus silvanus Deinococcus-Thermus Unlikely neg
Merdibacter massiliensis Firmicutes Rare neg
Merdimonas faecis Firmicutes Rare + neg neg neg neg
Mesobacillus jeotgali Firmicutes Rare vr neg neg + neg neg neg + neg neg neg neg neg neg neg neg
Mesobacillus subterraneus Firmicutes Rare neg neg neg neg neg
Mesorhizobium australicum Proteobacteria Unlikely neg
Mesorhizobium jarvisii Proteobacteria Unlikely neg + + + + + + + + + neg + neg neg + +
Mesorhizobium loti Proteobacteria Rare neg neg
Mesorhizobium muleiense Proteobacteria Unlikely neg
Mesosutterella multiformis Proteobacteria Rare neg neg
Metabacillus galliciensis Firmicutes Unlikely + neg neg neg neg neg
Metabacillus idriensis Firmicutes Rare + + + + + + +
Metabacillus litoralis Firmicutes Rare vr + + + + + + + +
Metabacillus niabensis Firmicutes Rare + + + +
Metakosakonia massiliensis Proteobacteria Rare neg + +
Metamycoplasma anseris Tenericutes Unlikely unk
Metaprevotella massiliensis Bacteroidetes Rare neg
Methanobrevibacter arboriphilus Euryarchaeota Rare +
Methanobrevibacter millerae Euryarchaeota Rare +
Methanobrevibacter oralis Euryarchaeota Rare +
Methanobrevibacter ruminantium Euryarchaeota Rare +
Methanobrevibacter smithii Euryarchaeota Moderate +
Methanococcus voltae Euryarchaeota Rare neg
Methanomassiliicoccus intestinalis Euryarchaeota Rare +
Methanomassiliicoccus luminyensis Candidatus Thermoplasmatota Rare +
Methanomethylophilus alvus Candidatus Thermoplasmatota Rare
Methanosphaera stadtmanae Euryarchaeota Minor +
Methylibium petroleiphilum Proteobacteria Unlikely neg
Methylobacterium adhaesivum Proteobacteria Unlikely neg + + + + +
Methylobacterium brachiatum Proteobacteria Unlikely neg
Methylobacterium jeotgali Proteobacteria Non neg neg + neg neg neg neg neg neg + neg neg neg neg neg +
Methylobacterium mesophilicum Proteobacteria Non neg + + neg w + + + neg + neg + neg neg + +
Methylobacterium organophilum Proteobacteria Unlikely neg
Methylobacterium oryzae Proteobacteria Unlikely neg
Methylobacterium phyllosphaerae Proteobacteria Unlikely neg neg
Methylobacterium radiotolerans Proteobacteria Non neg + + neg + + + + neg + neg + neg neg + +
Methylomusa anaerophila Firmicutes Unlikely neg neg neg neg neg neg
Methylorubrum aminovorans Proteobacteria Rare neg + + + w neg neg neg neg + neg + neg w w +
Methylorubrum extorquens Proteobacteria Non neg + + neg + neg neg neg neg + neg + neg w + +
Methylorubrum populi Proteobacteria Unlikely neg
Methylorubrum thiocyanatum Proteobacteria Unlikely neg + + neg + w w w neg + neg + neg w + +
Methylorubrum zatmanii Proteobacteria Unlikely neg + + + + neg neg neg neg + neg + neg w w +
Methyloversatilis discipulorum Proteobacteria Rare neg
Methyloversatilis universalis Proteobacteria Rare neg neg
Microbacterium aurum Actinobacteria Rare + neg neg w w w w w neg neg neg neg
Microbacterium chocolatum Actinobacteria Unlikely + neg neg neg + neg neg vr
Microbacterium deminutum Actinobacteria Unlikely +
Microbacterium esteraromaticum Actinobacteria Unlikely +
Microbacterium foliorum Actinobacteria Unlikely + + d + d neg + neg + d d neg neg + neg
Microbacterium ginsengisoli Actinobacteria Non + neg neg + neg neg neg + neg + neg neg neg + neg
Microbacterium gubbeenense Actinobacteria Unlikely + + + + + neg neg neg
Microbacterium hydrocarbonoxydans Actinobacteria Unlikely + neg + +
Microbacterium kitamiense Actinobacteria Unlikely + + + + + + d neg neg +
Microbacterium lacticum Actinobacteria Unlikely + neg neg + neg neg + + + neg neg neg neg neg neg neg
Microbacterium liquefaciens Actinobacteria Unlikely + + +
Microbacterium luteolum Actinobacteria Non + neg neg neg
Microbacterium maritypicum Actinobacteria Unlikely + neg neg + + neg neg neg
Microbacterium mitrae Actinobacteria Unlikely + neg
Microbacterium natoriense Actinobacteria Unlikely + + neg + neg + + + neg neg neg neg + neg
Microbacterium oleivorans Actinobacteria Unlikely + neg neg +
Microbacterium oxydans Actinobacteria Unlikely + d + + + + d
Microbacterium paraoxydans Actinobacteria Rare + neg neg + + + +
Microbacterium phyllosphaerae Actinobacteria Unlikely + d d + d neg + neg + + neg neg neg d neg
Microbacterium saccharophilum Actinobacteria Unlikely + + +
Microbacterium schleiferi Actinobacteria Unlikely + neg neg neg
Microbacterium sediminicola Actinobacteria Unlikely +
Microbacterium testaceum Actinobacteria Non + + neg
Microbispora rosea Actinobacteria Rare +
Micrococcus cohnii Actinobacteria Unlikely + neg neg + neg neg
Micrococcus endophyticus Actinobacteria Unlikely + + + + neg neg + + + + neg + neg neg neg neg
Micrococcus luteus Actinobacteria Minor + neg neg + + neg neg neg + + neg neg neg neg neg neg neg
Micrococcus lylae Actinobacteria Rare + neg neg neg + neg + neg + + + + neg + neg neg neg
Micrococcus terreus Actinobacteria Rare +
Microlunatus phosphovorus Actinobacteria Unlikely +
Micromonospora aurantiaca Actinobacteria Rare + neg neg neg
Micropruina glycogenica Actinobacteria Rare + +
Microvirga aerophila Proteobacteria Unlikely neg neg
Microvirga massiliensis Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Microvirgula aerodenitrificans Proteobacteria Unlikely neg
Millionella massiliensis Bacteroidetes Rare neg
Miniphocaeibacter massiliensis Firmicutes Rare +
Mitsuokella jalaludinii Firmicutes Minor neg + neg + neg neg + + + neg neg + neg neg + neg
Mitsuokella multacida Firmicutes Moderate neg + + neg + neg neg + + + neg d(neg) + neg + neg
Mixta calida Proteobacteria Rare neg + neg + neg neg + + + neg + + neg neg + neg
Mixta intestinalis Proteobacteria Rare neg
Mobilibacterium massiliense Firmicutes Rare neg
Mobilibacterium timonense Firmicutes Rare neg
Mobilicoccus massiliensis Actinobacteria Rare +
Mobiluncus curtisii Actinobacteria Rare vr neg neg w(neg) vr w neg neg neg neg w
Moellerella wisconsensis Proteobacteria Rare neg neg + + + + neg neg
Mogibacterium diversum Firmicutes Rare +
Mogibacterium neglectum Firmicutes Rare +
Mogibacterium pumilum Firmicutes Rare +
Mogibacterium timidum Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Mogibacterium vescum Firmicutes Unlikely +
Monoglobus pectinilyticus Firmicutes Minor + + + +
Moorella glycerini Firmicutes Unlikely +
Moraxella catarrhalis Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Moraxella osloensis Proteobacteria Unlikely neg neg vr
Mordavella massiliensis Firmicutes Rare neg
Morganella morganii Proteobacteria Minor neg neg neg + + + neg neg
Moryella indoligenes Firmicutes Rare + neg neg vr vr neg neg vr neg
Mucispirillum schaedleri Deferribacteres Rare neg
Murdochiella asaccharolytica Firmicutes Rare + neg
Murdochiella massiliensis Firmicutes Rare + + + + + +
Murdochiella vaginalis Firmicutes Rare + neg neg neg neg neg + + + neg neg neg neg neg neg neg
Muribaculum gordoncarteri Bacteroidetes Unlikely neg + + +
Muribaculum intestinale Bacteroidetes Minor neg neg neg neg neg
Murimonas intestini Firmicutes Rare +
Mycobacterium abscessus Actinobacteria Unlikely vr neg neg neg neg neg neg neg neg
Mycobacterium avium Actinobacteria Unlikely vr neg neg neg
Mycobacterium avium subsp. paratuberculosis Actinobacteria Unlikely vr
Mycobacterium colombiense Actinobacteria Rare vr
Mycobacterium florentinum Actinobacteria Rare vr
Mycobacterium fortuitum Actinobacteria Rare vr neg neg + d(+) neg neg neg
Mycobacterium gastri Actinobacteria Rare vr
Mycobacterium gordonae Actinobacteria Rare vr neg + neg + + neg neg
Mycobacterium interjectum Actinobacteria Rare vr
Mycobacterium kansasii Actinobacteria Unlikely vr
Mycobacterium lentiflavum Actinobacteria Rare vr
Mycobacterium simiae Actinobacteria Rare vr
Mycobacterium terrae Actinobacteria Rare vr
Mycobacterium tuberculosis Actinobacteria Non vr
Mycobacterium tuberculosis variant africanum Actinobacteria Non vr
Mycobacterium tuberculosis variant bovis Actinobacteria Unlikely +
Mycobacteroides abscessus subsp. bolletii Actinobacteria Unlikely +
Mycolicibacterium aubagnense Actinobacteria Non + neg neg neg
Mycolicibacterium cosmeticum Actinobacteria Unlikely vr
Mycolicibacterium houstonense Actinobacteria Rare + neg + neg + + neg neg
Mycolicibacterium mageritense Actinobacteria Unlikely +
Mycolicibacterium neoaurum Actinobacteria Rare +
Mycoplasma hominis Tenericutes Rare neg neg neg neg neg
Mycoplasma muris Tenericutes Rare neg neg
Mycoplasma pneumoniae Tenericutes Rare neg
Mycoplasmopsis arginini Tenericutes Unlikely neg
Mycoplasmopsis californica Tenericutes Unlikely neg
Myroides odoratimimus Bacteroidetes Unlikely neg
Myroides odoratus Bacteroidetes Unlikely neg
Nakamurella multipartita Actinobacteria Unlikely +
Nanosynbacter lyticus Candidatus Saccharibacteria Unlikely +
Natronorubrum bangense Euryarchaeota Non neg
Nautilia nitratireducens Proteobacteria Unlikely neg
Ndongobacter massiliensis Firmicutes Unlikely neg
Necropsobacter rosorum Proteobacteria Rare neg + + + neg + + + + + neg + neg
Negativibacillus massiliensis Firmicutes Minor neg + + + + +
Negativicoccus massiliensis Firmicutes Rare neg
Negativicoccus succinicivorans Firmicutes Rare neg
Neglecta timonensis Firmicutes Rare +
Neisseria bacilliformis Proteobacteria Rare neg neg
Neisseria canis Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Neisseria cinerea Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Neisseria elongata Proteobacteria Minor neg neg neg neg neg neg neg d neg neg neg neg neg neg neg neg
Neisseria flava Proteobacteria Rare neg neg neg + neg neg + neg neg neg neg neg neg neg
Neisseria flavescens Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Neisseria gonorrhoeae Proteobacteria Non neg neg neg neg neg neg neg d(+) neg neg neg neg neg neg neg neg
Neisseria lactamica Proteobacteria Rare neg neg neg neg neg neg neg + neg neg neg neg neg neg neg neg
Neisseria macacae Proteobacteria Rare neg neg neg + neg neg + neg neg neg neg neg neg neg
Neisseria meningitidis Proteobacteria Unlikely neg neg neg neg neg neg neg d neg neg neg neg neg neg neg neg
Neisseria mucosa Proteobacteria Rare neg neg neg + neg neg neg + neg neg neg neg neg neg neg
Neisseria oralis Proteobacteria Rare neg neg + + neg neg
Neisseria perflava Proteobacteria Rare neg neg neg + neg neg neg + neg neg neg neg neg neg neg neg
Neisseria polysaccharea Proteobacteria Rare neg neg +
Neisseria shayeganii Proteobacteria Rare neg neg neg + neg neg
Neisseria sicca Proteobacteria Rare neg neg neg + neg neg neg + neg neg neg neg neg neg neg neg
Neisseria subflava Proteobacteria Rare neg neg neg d(+) neg neg neg + neg neg neg neg neg neg neg neg
Neoactinobaculum massilliense Actinobacteria Rare + neg neg + neg + neg + neg neg neg neg neg neg neg neg
Neobacillus bataviensis Firmicutes Rare + neg neg + d neg + + + neg neg w neg neg neg neg
Neobacillus fumarioli Firmicutes Unlikely + neg neg + neg neg d + + neg neg d neg neg neg neg
Neobacillus jeddahensis Firmicutes Rare + + + + neg neg neg + + neg neg neg neg neg + neg
Neobacillus massiliamazoniensis Firmicutes Rare + neg neg w neg neg neg + + neg neg neg neg neg neg neg
Neobacillus niacini Firmicutes Rare + neg neg neg + neg neg + + + neg d(+) d(+) neg + neg
Neobacillus pocheonensis Firmicutes Unlikely + w neg neg
Neobacillus soli Firmicutes Rare + neg neg + neg neg d + + neg w neg neg neg neg
Neobittarella massiliensis Firmicutes Moderate +
Neofamilia massiliensis Firmicutes Rare
Nesterenkonia massiliensis Actinobacteria Rare + neg + neg + + + + neg
Nevskia ramosa Proteobacteria Unlikely neg neg
Niallia nealsonii Firmicutes Rare + + + neg neg + + + + + neg neg + + neg
Niameybacter massiliensis Firmicutes Rare +
Nigerium massiliense Actinobacteria Rare +
Nitriliruptor alkaliphilus Actinobacteria Unlikely +
Nitrosomonas eutropha Proteobacteria Rare neg
Nocardia asteroides Actinobacteria Rare +
Nocardia brevicatena Actinobacteria Rare +
Nocardia cyriacigeorgica Actinobacteria Rare +
Nocardia mangyaensis Actinobacteria Unlikely +
Nocardia otitidiscaviarum Actinobacteria Rare +
Nocardioides jensenii Actinobacteria Unlikely +
Nocardioides kribbensis Actinobacteria Unlikely +
Nocardioides massiliensis Actinobacteria Unlikely + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Nosocomiicoccus massiliensis Firmicutes Rare + neg neg neg neg neg
Noviherbaspirillum massiliense Proteobacteria Rare neg neg
Novosphingobium capsulatum Proteobacteria Unlikely neg + + + + + + + neg +
Numidum massiliense Firmicutes Rare + neg + + + +
Obesumbacterium proteus Proteobacteria Rare neg +
Oceanidesulfovibrio marinus Proteobacteria Unlikely neg
Oceanithermus profundus Deinococcus-Thermus Unlikely neg
Oceanobacillus caeni Firmicutes Rare + + + + neg + +
Oceanobacillus iheyensis Firmicutes Unlikely + neg + + neg
Oceanobacillus jeddahense Firmicutes Rare + neg + neg + + neg
Oceanobacillus manasiensis Firmicutes Rare + neg neg + neg neg neg + + + neg neg neg neg neg
Oceanobacillus massiliensis Firmicutes Rare + neg neg + neg neg neg + + neg neg neg neg neg + neg
Oceanobacillus oncorhynchi Firmicutes Non + neg + + + + neg
Oceanobacillus picturae Firmicutes Unlikely + neg w neg w w w neg
Oceanobacillus senegalensis Firmicutes Unlikely +
Oceanobacillus sojae Firmicutes Rare + neg neg + neg neg neg + + neg + neg + neg neg
Oceanobacillus timonensis Firmicutes Unlikely +
Ochrobactrum anthropi Proteobacteria Unlikely neg neg + neg
Ochrobactrum intermedium Proteobacteria Unlikely neg neg + neg
Odoribacter laneus Bacteroidetes Minor neg neg neg neg neg neg neg neg
Odoribacter massiliensis Bacteroidetes Minor
Odoribacter splanchnicus Bacteroidetes Widespread neg neg
Oenococcus oeni Firmicutes Unlikely + d + d(neg) + d d(neg)
Oerskovia turbata Actinobacteria Rare + + + + + + neg + neg +
Okadaella gastrococcus Firmicutes Rare neg
Olegusella massiliensis Actinobacteria Rare + neg + + neg
Oleidesulfovibrio alaskensis Proteobacteria Rare neg
Oleidesulfovibrio vietnamensis Proteobacteria Rare neg
Oligella urethralis Proteobacteria Rare neg neg neg neg
Olsenella congonensis Actinobacteria Rare +
Olsenella massiliensis Actinobacteria Rare + +
Olsenella phocaeensis Actinobacteria Rare +
Olsenella profusa Actinobacteria Rare + + + + + +
Olsenella timonensis Actinobacteria Rare +
Olsenella uli Actinobacteria Rare + neg + + + neg neg
Olsenella urininfantis Actinobacteria Rare +
Oribacterium asaccharolyticum Firmicutes Rare vr
Oribacterium parvum Firmicutes Rare vr neg + neg neg
Oribacterium sinus Firmicutes Minor vr neg neg + + neg neg neg neg
Ornithinibacillus contaminans Firmicutes Unlikely + + +
Ornithinibacillus massiliensis Firmicutes Rare +
Ornithobacterium rhinotracheale Bacteroidetes Rare neg d(+) neg + d(+) + d neg
Oscillibacter massiliensis Firmicutes Rare neg
Oscillibacter ruminantium Firmicutes Rare neg neg neg neg neg + neg neg + +
Oscillibacter valericigenes Firmicutes Minor neg + neg neg neg + neg neg + neg +
Oscillospira guillermondii Firmicutes Rare +
Ottowia massiliensis Pseudomonadota Rare neg
Oxalobacter formigenes Proteobacteria Moderate neg
Pacaella massiliensis Synergistetes Rare neg
Paenarthrobacter aurescens Actinobacteria Rare +
Paenarthrobacter ilicis Actinobacteria Non + +
Paenibacillus alvei Firmicutes Unlikely + neg neg neg neg neg neg d + neg neg neg + neg neg neg neg
Paenibacillus amylolyticus Firmicutes Rare + + + + + + d(neg) +
Paenibacillus anaericanus Firmicutes Rare neg + neg + neg neg + + + neg + + neg neg + neg
Paenibacillus antibioticophila Firmicutes Rare + + neg + neg neg + + + + + + neg neg + neg
Paenibacillus azoreducens Firmicutes Rare vr neg + + + + neg + neg +
Paenibacillus barcinonensis Firmicutes Unlikely + + + + neg neg + + + neg neg + neg neg + neg
Paenibacillus barengoltzii Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Paenibacillus borealis Firmicutes Unlikely neg + neg + neg neg + + + neg neg neg d(neg) + neg
Paenibacillus bouchesdurhonensis Firmicutes Rare neg + + + neg
Paenibacillus chibensis Firmicutes Unlikely + + + + + neg + neg +
Paenibacillus chitinolyticus Firmicutes Rare vr neg neg + neg
Paenibacillus cineris Firmicutes Rare vr + d(w) + neg neg + + d neg neg + neg neg + neg
Paenibacillus cookii Firmicutes Unlikely vr + neg d d neg + + d neg neg + neg neg + neg
Paenibacillus daejeonensis Firmicutes Rare vr neg neg
Paenibacillus dendritiformis Firmicutes Rare neg neg neg + + neg
Paenibacillus donghaensis Firmicutes Unlikely + + neg + neg + + + neg + + neg neg + neg
Paenibacillus durus Firmicutes Rare + neg + + + neg neg neg
Paenibacillus faecis Firmicutes Rare + + neg + neg + + + + neg + +
Paenibacillus favisporus Firmicutes Rare vr + + + +
Paenibacillus glucanolyticus Firmicutes Rare neg d(+) + + + + +
Paenibacillus graminis Firmicutes Unlikely + + neg + neg d + + + neg neg neg neg neg + neg
Paenibacillus ihuae Firmicutes Rare +
Paenibacillus ihumii Firmicutes Rare neg + neg + neg neg + + + + neg + neg neg +
Paenibacillus illinoisensis Firmicutes Rare + + + + + + neg + neg +
Paenibacillus jamilae Firmicutes Rare vr + neg + neg + + + + neg + neg neg + neg
Paenibacillus kribbensis Firmicutes Rare vr + neg + neg neg + + + neg neg + neg neg + neg
Paenibacillus lactis Firmicutes Rare neg neg + d + d neg d + + neg neg + neg neg + neg
Paenibacillus larvae Firmicutes Rare + neg neg d neg neg d + + neg neg + neg d neg neg
Paenibacillus lautus Firmicutes Rare vr neg + + + + neg + + + neg + neg neg + neg
Paenibacillus macerans Firmicutes Rare + + d + d neg + + + neg + + neg neg + neg
Paenibacillus motobuensis Firmicutes Rare neg
Paenibacillus mucilaginosus Firmicutes Unlikely neg +
Paenibacillus naphthalenovorans Firmicutes Unlikely + neg neg d neg neg + + + neg neg neg d neg neg neg
Paenibacillus odorifer Firmicutes Unlikely + + + +
Paenibacillus pabuli Firmicutes Rare + + + + + + + + +
Paenibacillus pasadenensis Firmicutes Rare + neg neg
Paenibacillus phocaensis Firmicutes Rare neg + neg + + neg + + + neg + neg neg neg neg
Paenibacillus polymyxa Firmicutes Rare neg + neg + neg neg + + + neg + + neg neg + neg
Paenibacillus provencensis Firmicutes Rare neg w neg + neg neg + + + neg neg w neg neg w neg
Paenibacillus pueri Firmicutes Rare + + neg + neg + + + neg neg + neg neg + neg
Paenibacillus rhizosphaerae Firmicutes Unlikely + + + + +
Paenibacillus riograndensis Firmicutes Unlikely vr + + + + + +
Paenibacillus rubinfantis Firmicutes Rare neg + + + neg
Paenibacillus sabinae Firmicutes Rare + neg neg neg
Paenibacillus senegalensis Firmicutes Rare neg + + + + +
Paenibacillus senegalimassiliensis Firmicutes Rare vr + + + neg
Paenibacillus stellifer Firmicutes Unlikely +
Paenibacillus thiaminolyticus Firmicutes Unlikely + d(+) + + + + neg + neg
Paenibacillus timonensis Firmicutes Rare + + neg + neg neg + + + neg neg neg neg neg + neg
Paenibacillus tuaregi Firmicutes Rare vr + + + neg
Paenibacillus typhae Firmicutes Rare + + neg + neg neg + + + neg + neg neg neg + neg
Paenibacillus urinalis Firmicutes Rare neg + neg neg neg neg + + + neg neg + neg neg + neg
Paenibacillus xylanilyticus Firmicutes Rare + + + + + +
Paeniclostridium ghonii Firmicutes Rare +
Paeniclostridium sordellii Firmicutes Minor + neg + neg + neg neg neg
Paenisporosarcina quisquiliarum Firmicutes Unlikely + neg + + + neg neg neg
Paludibacter jiangxiensis Bacteroidetes Rare neg + + + + + +
Paludibacter propionicigenes Bacteroidetes Unlikely neg
Paludibaculum fermentans Acidobacteria Unlikely neg + + + +
Paludicola psychrotolerans Firmicutes Rare +
Pannonibacter phragmitetus Proteobacteria Unlikely neg + + + + neg + +
Pantoea agglomerans Proteobacteria Minor neg + + + + + + + +
Pantoea conspicua Proteobacteria Rare neg + + + + + +
Pantoea eucalypti Proteobacteria Rare neg + + + +
Pantoea rodasii Proteobacteria Unlikely neg + + + + + + + + +
Pantoea septica Proteobacteria Rare neg + + + + + +
Pantoea vagans Proteobacteria Rare neg + + + + + +
Papillibacter cinnamivorans Firmicutes Rare +
Parabacteroides bouchesdurhonensis Bacteroidetes Minor neg + + + + + + + + + + + + + + +
Parabacteroides chinchillae Bacteroidetes Minor neg neg + + neg neg
Parabacteroides distasonis Bacteroidetes Widespread neg neg neg + neg + + + + +
Parabacteroides faecis Bacteroidetes Rare neg neg + + + +
Parabacteroides goldsteinii Bacteroidetes Moderate neg neg + + +
Parabacteroides gordonii Bacteroidetes Minor neg + + + + neg +
Parabacteroides johnsonii Bacteroidetes Moderate neg + + + + d +
Parabacteroides massiliensis Bacteroidetes Rare neg + neg + neg neg + + + neg neg neg neg w w +
Parabacteroides merdae Bacteroidetes Widespread neg neg + + + + d d(neg) +
Parabacteroides pacaensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Parabacteroides pekinense Bacteroidetes Rare neg + + + + +
Parabacteroides provencensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Parabacteroides timonensis Bacteroidetes Minor neg
Paraburkholderia fungorum Proteobacteria Rare neg
Paraburkholderia phytofirmans Proteobacteria Unlikely neg + + +
Paracholeplasma brassicae Tenericutes Unlikely neg +
Paraclostridium benzoelyticum Firmicutes Rare +
Paraclostridium bifermentans Firmicutes Moderate +
Paracoccus aminovorans Proteobacteria Rare neg + + + + + neg
Paracoccus carotinifaciens Proteobacteria Unlikely neg + neg + + + +
Paracoccus denitrificans Proteobacteria Rare neg
Paracoccus haeundaensis Proteobacteria Unlikely neg neg
Paracoccus marcusii Proteobacteria Non neg
Paracoccus marinus Proteobacteria Unlikely neg neg
Paracoccus sphaerophysae Proteobacteria Unlikely neg neg
Paracoccus yeei Proteobacteria Rare neg + +
Paraeggerthella hongkongensis Actinobacteria Rare + neg neg neg neg
Parafannyhessea umbonata Actinobacteria Unlikely + neg + + + neg neg
Paraliobacillus quinghaiensis Firmicutes Non + + neg neg
Paramuribaculum intestinale Bacteroidetes Rare neg
Paraprevotella clara Bacteroidetes Moderate neg + + + neg +
Paraprevotella xylaniphila Bacteroidetes Moderate neg + + + neg w
Pararheinheimera texasensis Proteobacteria Rare neg
Parascardovia denticolens Actinobacteria Rare + d + neg neg + + neg neg + neg
Parasphingorhabdus flavimaris Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Parasporobacterium paucivorans Firmicutes Rare neg
Parasutterella excrementihominis Proteobacteria Moderate neg
Parasutterella secunda Proteobacteria Rare neg
Paratractidigestivibacter faecalis Actinobacteria Rare + neg neg neg + neg neg
Paremcibacter congregatus Proteobacteria Unlikely neg w neg neg + neg neg neg + + neg + w neg neg neg neg
Parolsenella catena Actinobacteria Rare + neg + + neg neg
Parolsenella massiliensis Actinobacteria Rare + neg neg neg neg neg neg
Parvibacter caecicola Actinobacteria Rare + neg
Parvimonas micra Firmicutes Moderate + neg neg + neg neg neg neg
Pasteurella aerogenes Proteobacteria Rare neg d + + + neg + + + neg + neg d neg
Pasteurella dagmatis Proteobacteria Rare neg + + + + neg neg neg
Pasteurella multocida Proteobacteria Rare neg neg d + d neg + + + neg + neg d neg
Paucilactobacillus oligofermentans Firmicutes Non + + neg neg neg neg neg w neg neg neg + neg neg + neg
Paucilactobacillus suebicus Firmicutes Unlikely + + neg + + + +
Paucilactobacillus vaccinostercus Firmicutes Unlikely + + d neg neg d + neg d neg + neg neg + neg
Paucisalibacillus globulus Firmicutes Unlikely + neg neg + neg neg neg + + neg + neg + + neg
Pauljensenia bouchesdurhonensis Actinobacteria Minor +
Pauljensenia cellulosilytica Actinobacteria Rare +
Pauljensenia hongkongensis Actinobacteria Rare + neg neg neg neg
Pauljensenia keddieii Actinobacteria Minor +
Pauljensenia odontolyticus Actinobacteria Rare +
Pauljensenia turicensis Actinobacteria Rare +
Pectobacterium wasabiae Proteobacteria Unlikely neg + + + + neg + neg neg
Pediococcus acidilactici Firmicutes Rare + neg + neg + neg neg + vr vr neg + neg + neg
Pediococcus claussenii Firmicutes Rare
Pediococcus damnosus Firmicutes Unlikely + neg neg + neg neg + + + neg neg neg neg neg neg
Pediococcus pentosaceus Firmicutes Minor + + d neg + neg neg + + + neg + neg d neg
Pedobacter cryoconitis Proteobacteria Non neg
Pedobacter daejeonensis Proteobacteria Unlikely neg neg
Pedobacter panaciterrae Bacteroidetes Unlikely neg neg neg neg
Pedobacter terricola Bacteroidetes Non neg
Pedomicrobium ferrugineum Proteobacteria Rare neg
Pelistega indica Proteobacteria Rare neg neg
Pelobacter propionicus Proteobacteria Rare neg
Pelomonas aquatica Proteobacteria Rare neg
Pelomonas puraquae Proteobacteria Rare neg
Pelomonas saccharophila Proteobacteria Rare neg +
Peptacetobacter hiranonis Firmicutes Minor + neg + neg + + neg neg neg neg
Peptoclostridium acidaminophilum Firmicutes Unlikely +
Peptococcus niger Firmicutes Rare +
Peptoniphilus asaccharolyticus Firmicutes Minor + neg neg neg neg neg neg neg
Peptoniphilus catoniae Firmicutes Rare +
Peptoniphilus colimassiliensis Firmicutes Rare + neg neg + neg neg + + neg neg neg neg w neg neg neg
Peptoniphilus duerdenii Firmicutes Rare + neg
Peptoniphilus gorbachii Firmicutes Rare + neg
Peptoniphilus grossensis Firmicutes Rare + +
Peptoniphilus harei Firmicutes Minor + neg vr neg neg
Peptoniphilus indolicus Firmicutes Rare + neg neg neg neg neg neg neg
Peptoniphilus ivorii Firmicutes Rare + neg neg neg neg
Peptoniphilus koenoeneniae Firmicutes Rare + neg neg neg neg
Peptoniphilus lacrimalis Firmicutes Minor + neg neg neg neg neg neg
Peptoniphilus obesi Firmicutes Rare +
Peptoniphilus pacaensis Firmicutes Rare + neg neg neg neg neg neg + neg + neg
Peptoniphilus phoceensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Peptoniphilus senegalensis Firmicutes Rare + neg
Peptoniphilus timonensis Firmicutes Rare + neg
Peptostreptococcus anaerobius Firmicutes Moderate + neg neg w(+) w(+) neg neg neg
Peptostreptococcus russellii Firmicutes Rare +
Peptostreptococcus stomatis Firmicutes Minor + neg neg w(+) w(+) neg neg neg neg
Peribacillus psychrosaccharolyticus Firmicutes Unlikely vr neg + neg + + neg +
Peribacillus simplex Firmicutes Rare vr neg d(w) neg + neg neg vr w(+) neg neg neg w(+) neg neg neg neg
Petrimonas mucosa Bacteroidetes Unlikely neg
Petrimonas sulfuriphila Bacteroidetes Rare neg + + + + + + + neg
Petrobacter succinatimandens Proteobacteria Rare neg
Petrocella atlantisensis Firmicutes Unlikely +
Phascolarctobacterium faecium Firmicutes Minor neg neg neg neg
Phascolarctobacterium succinatutens Firmicutes Moderate neg neg neg neg neg neg
Phenylobacterium falsum Proteobacteria Unlikely neg
Phenylobacterium haematophilum Proteobacteria Rare neg
Phenylobacterium lituiforme Proteobacteria Unlikely neg
Phocaeicola barnesiae Bacteroidetes Moderate neg neg + + neg +
Phocaeicola coprocola Bacteroidetes Widespread neg neg neg neg + + d +
Phocaeicola coprophilus Bacteroidetes Widespread neg neg + + neg neg
Phocaeicola dorei Bacteroidetes Widespread neg + + + + +
Phocaeicola massiliensis Bacteroidetes Minor neg neg + neg + + + neg neg neg neg
Phocaeicola paurosaccharolyticus Bacteroidetes Rare neg + neg +
Phocaeicola plebeius Bacteroidetes Widespread neg + + + + +
Phocaeicola salanitronis Bacteroidetes Minor neg + + + w +
Phocaeicola sartorii Bacteroidetes Moderate neg + neg + + + +
Phocaeicola vulgatus Bacteroidetes Widespread neg + + + + + + + + d neg +
Phocea massiliensis Firmicutes Minor neg
Phoenicibacter congonensis Actinobacteria Rare + + + + + + + + + + +
Phyllobacterium myrsinacearum Proteobacteria Rare neg neg
Pigmentiphaga kullae Proteobacteria Rare neg neg neg neg neg neg
Planococcus massiliensis Firmicutes Unlikely + neg + + + + +
Planococcus rifietoensis Firmicutes Unlikely +
Planomicrobium chinense Firmicutes Unlikely + neg + neg neg neg
Planomicrobium koreense Firmicutes Unlikely + neg neg neg neg neg neg w neg neg neg neg neg neg neg neg
Planomicrobium okeanokoites Firmicutes Unlikely + neg neg + neg neg neg neg neg neg + neg neg + neg
Plesiomonas shigelloides Proteobacteria Rare neg neg neg neg + neg
Pluralibacter gergoviae Proteobacteria Rare neg + + + + neg +
Pontibacillus litoralis Firmicutes Rare + neg + neg + neg neg neg neg
Porphyromonas asaccharolytica Bacteroidetes Minor neg neg neg neg neg neg
Porphyromonas bennonis Bacteroidetes Rare neg +
Porphyromonas cangingivalis Bacteroidetes Unlikely neg neg neg neg
Porphyromonas canoris Bacteroidetes Rare neg neg neg neg neg
Porphyromonas crevioricanis Bacteroidetes Unlikely neg neg neg neg neg neg
Porphyromonas endodontalis Bacteroidetes Minor neg neg
Porphyromonas gingivalis Bacteroidetes Unlikely neg neg neg neg neg neg
Porphyromonas levii Bacteroidetes Rare neg neg + neg neg neg neg
Porphyromonas macacae Bacteroidetes Rare neg neg + + + neg neg
Porphyromonas somerae Bacteroidetes Minor neg neg w + neg neg
Porphyromonas uenonis Bacteroidetes Minor neg neg
Pragia fontium Proteobacteria Rare neg neg + + neg neg neg d
Prevotella albensis Bacteroidetes Rare neg + + neg + + neg neg neg neg + neg
Prevotella amnii Bacteroidetes Rare neg neg + neg
Prevotella aurantiaca Bacteroidetes Rare neg neg + + neg neg
Prevotella baroniae Bacteroidetes Rare neg neg + + + neg neg neg
Prevotella bergensis Bacteroidetes Moderate neg + + + + + neg +
Prevotella bivia Bacteroidetes Moderate neg neg neg + d(+) + + neg neg
Prevotella brevis Bacteroidetes Minor neg + + + neg + + + neg neg neg neg neg neg
Prevotella bryantii Bacteroidetes Rare neg + + + neg + + + neg w neg neg + neg
Prevotella buccae Bacteroidetes Minor neg + + + + + + vr
Prevotella buccalis Bacteroidetes Minor neg neg + + + neg neg
Prevotella conceptionensis Bacteroidetes Rare neg + +
Prevotella copri Bacteroidetes Widespread neg + + neg + +
Prevotella corporis Bacteroidetes Moderate neg neg neg d(+) + d(+) neg neg neg
Prevotella dentalis Bacteroidetes Minor neg + + + + + + neg neg
Prevotella dentasini Bacteroidetes Rare neg neg + neg neg neg
Prevotella denticola Bacteroidetes Minor neg neg neg neg + + + neg d neg neg
Prevotella disiens Bacteroidetes Minor neg neg neg + neg + neg neg neg
Prevotella enoeca Bacteroidetes Rare neg neg neg + + d(+) neg neg neg
Prevotella falsenii Bacteroidetes Rare
Prevotella fusca Bacteroidetes Unlikely neg neg + + + neg + neg
Prevotella herbatica Bacteroidetes Unlikely neg
Prevotella histicola Bacteroidetes Rare neg neg + + + neg neg neg
Prevotella ihumii Bacteroidetes Rare neg neg neg neg neg neg neg + neg neg neg neg neg neg + neg neg
Prevotella intermedia Bacteroidetes Minor neg neg neg d(+) + d neg neg neg neg
Prevotella jejuni Bacteroidetes Rare neg neg + + neg neg
Prevotella lascolaii Bacteroidetes Minor neg + neg neg + neg neg + + neg
Prevotella loescheii Bacteroidetes Rare neg neg neg + + + neg neg neg neg
Prevotella maculosa Bacteroidetes Rare neg + + + + + +
Prevotella marseillensis Bacteroidetes Rare neg + + + + + + + + + + + + + + +
Prevotella marshii Bacteroidetes Rare neg neg d + d neg neg
Prevotella melaninogenica Bacteroidetes Moderate neg neg neg neg + + + neg neg neg neg
Prevotella merdae Bacteroidetes Rare neg
Prevotella micans Bacteroidetes Rare neg neg + + + neg neg neg
Prevotella multiformis Bacteroidetes Rare neg neg + + neg neg
Prevotella multisaccharivorax Bacteroidetes Minor neg d + + +
Prevotella nanceiensis Bacteroidetes Rare neg neg + neg neg
Prevotella nigrescens Bacteroidetes Minor neg neg neg + neg neg neg neg
Prevotella oralis Bacteroidetes Minor neg d(+) + + + d(+) d(+)
Prevotella oris Bacteroidetes Moderate neg + + +
Prevotella oryzae Bacteroidetes Unlikely neg
Prevotella oulorum Bacteroidetes Rare neg neg neg + + + neg neg
Prevotella pallens Bacteroidetes Rare neg neg neg + neg
Prevotella paludivivens Bacteroidetes Rare neg
Prevotella phocaeensis Bacteroidetes Rare neg + neg neg neg neg neg neg neg + neg + neg + neg +
Prevotella pleuritidis Bacteroidetes Rare neg neg + + neg neg
Prevotella rara Bacteroidetes Rare neg + + neg + +
Prevotella rectalis Bacteroidetes Rare neg neg neg neg neg neg + neg neg neg neg neg neg neg neg neg
Prevotella ruminicola Bacteroidetes Minor neg w(+) w(+) + + + + + +
Prevotella saccharolytica Bacteroidetes Rare neg + + + +
Prevotella salivae Bacteroidetes Rare neg + + + neg +
Prevotella scopos Bacteroidetes Unlikely neg neg + + + neg neg neg
Prevotella seregens Bacteroidetes Rare
Prevotella shahii Bacteroidetes Rare neg neg neg + + neg neg
Prevotella stercorea Bacteroidetes Moderate neg neg neg + + neg neg
Prevotella timonensis Bacteroidetes Minor neg neg neg + neg neg w w neg
Prevotella veroralis Bacteroidetes Minor neg neg neg neg + + + neg neg neg neg
Prevotellamassilia timonensis Bacteroidetes Minor neg
Priestia flexa Firmicutes Rare vr neg neg neg + + + neg neg neg
Priestia koreensis Firmicutes Unlikely + neg + + neg neg + neg
Priestia megaterium Firmicutes Rare + + neg + neg neg + + d neg neg + neg neg + neg
Prochlorococcus marinus Cyanobacteria Rare neg
Prolixibacter bellariivorans Bacteroidetes Unlikely neg + neg + +
Propionibacterium acidifaciens Actinobacteria Rare + neg + + + + +
Propionibacterium freudenreichii Actinobacteria Rare + + neg + + neg neg d neg neg
Propionimicrobium lymphophilum Actinobacteria Rare neg neg + neg + neg neg + neg
Prosthecobacter fluviatilis Verrucomicrobia Rare neg
Proteiniphilum saccharofermentans Bacteroidetes Unlikely neg
Proteus mirabilis Proteobacteria Moderate neg neg neg + neg +
Proteus penneri Proteobacteria Rare neg neg neg neg + + neg neg +
Proteus vulgaris Proteobacteria Rare neg neg neg + neg +
Provencibacterium massiliense Firmicutes Moderate neg
Providencia alcalifaciens Proteobacteria Minor neg neg neg + + neg neg
Providencia heimbachae Proteobacteria Rare neg neg + + + + + neg neg neg
Providencia rettgeri Proteobacteria Minor neg d(neg) neg + + d(+) neg
Providencia rustigianii Proteobacteria Rare neg neg neg neg + + + neg +
Providencia stuartii Proteobacteria Rare neg neg neg + + neg neg
Pseudarthrobacter oxydans Actinobacteria Rare +
Pseudarthrobacter polychromogenes Actinobacteria Unlikely vr
Pseudescherichia vulneris Proteobacteria Rare neg + + + + +
Pseudobutyrivibrio ruminis Firmicutes Rare neg + + + + + +
Pseudobutyrivibrio xylanivorans Firmicutes Unlikely neg
Pseudochrobactrum asaccharolyticum Proteobacteria Rare neg
Pseudochrobactrum saccharolyticum Proteobacteria Rare neg
Pseudocitrobacter anthropi Proteobacteria Rare neg + + + +
Pseudocitrobacter faecalis Proteobacteria Rare neg + + + + +
Pseudoclavibacter alba Actinobacteria Rare + neg neg neg neg neg neg
Pseudoclavibacter helvolus Actinobacteria Unlikely +
Pseudoclavibacter sp. Timone Actinobacteria Rare +
Pseudoclostridium thermosuccinogenes Firmicutes Unlikely neg
Pseudodesulfovibrio aespoeensis Proteobacteria Unlikely neg
Pseudodesulfovibrio indicus Proteobacteria Unlikely neg
Pseudoflavonifractor capillosus Firmicutes Moderate neg neg neg w w w w neg neg +
Pseudoglutamicibacter albus Actinobacteria Rare +
Pseudoglutamicibacter cumminsii Actinobacteria Unlikely + d + neg
Pseudomonas aeruginosa Proteobacteria Rare neg neg neg + neg
Pseudomonas alcaligenes Proteobacteria Non neg
Pseudomonas alcaliphila Proteobacteria Rare neg neg + neg + neg +
Pseudomonas asiatica Proteobacteria Rare neg
Pseudomonas asplenii Proteobacteria Unlikely neg + neg + neg neg d(neg) + + neg neg d(neg) neg neg d(neg) neg
Pseudomonas boreopolis Proteobacteria Non neg w w w w neg
Pseudomonas caricapapayae Proteobacteria Non neg
Pseudomonas chlororaphis Proteobacteria Non neg
Pseudomonas citronellolis Proteobacteria Rare neg neg neg neg neg
Pseudomonas fluorescens Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Pseudomonas fragi Proteobacteria Rare neg
Pseudomonas fulva Proteobacteria Rare neg
Pseudomonas gessardii Proteobacteria Non neg + + +
Pseudomonas japonica Proteobacteria Non neg
Pseudomonas libanensis Proteobacteria Non neg
Pseudomonas lundensis Proteobacteria Non neg + neg + + + vr + neg +
Pseudomonas luteola Proteobacteria Unlikely neg + + + + + + + +
Pseudomonas massiliensis Proteobacteria Non neg + +
Pseudomonas mendocina Proteobacteria Rare neg
Pseudomonas migulae Proteobacteria Non neg
Pseudomonas monteilii Proteobacteria Unlikely neg neg
Pseudomonas mosselii Proteobacteria Non neg
Pseudomonas nitroreducens Proteobacteria Unlikely neg +
Pseudomonas oleovorans Proteobacteria Unlikely neg neg + neg neg neg neg neg
Pseudomonas oryzihabitans Proteobacteria Unlikely neg + + + + + neg +
Pseudomonas parafulva Proteobacteria Unlikely neg
Pseudomonas protegens Proteobacteria Unlikely neg
Pseudomonas putida Biovar A Proteobacteria Rare neg neg neg neg neg
Pseudomonas putida Biovar B Proteobacteria Rare neg neg neg neg neg
Pseudomonas rhodesiae Proteobacteria Non neg
Pseudomonas saudiphocaensis Proteobacteria Rare neg
Pseudomonas straminea Proteobacteria Unlikely neg neg neg neg neg
Pseudomonas stutzeri Proteobacteria Unlikely neg neg neg neg
Pseudomonas taetrolens Proteobacteria Non neg
Pseudomonas tolaasii Proteobacteria Unlikely neg
Pseudomonas veronii Proteobacteria Rare neg
Pseudomonas weihenstephanensis Proteobacteria Unlikely neg
Pseudomonas xanthomarina Proteobacteria Non neg d
Pseudomonas yamanorum Proteobacteria Unlikely neg + + + + + + + + + + + neg neg + neg
Pseudomonas zhaodongensis Proteobacteria Unlikely neg + + + neg + + + + + +
Pseudonocardia dioxanivorans Actinobacteria Unlikely + + + + +
Pseudoprevotella muciniphila Bacteroidetes Rare neg neg
Pseudopropionibacterium massiliense Actinobacteria Rare + neg + + + neg neg + + neg neg + neg neg neg neg
Pseudoramibacter alactolyticus Firmicutes Rare + neg + + neg neg neg neg
Pseudoruegeria marinistellae Proteobacteria Rare neg
Pseudoruminococcus massiliensis Firmicutes Rare neg neg neg
Pseudoxanthomonas broegbernensis Proteobacteria Unlikely neg
Pseudoxanthomonas japonensis Proteobacteria Unlikely neg
Pseudoxanthomonas mexicana Proteobacteria Rare neg neg
Pseudoxanthomonas spadix Proteobacteria Rare neg neg neg neg neg neg
Pseudoxanthomonas suwonensis Proteobacteria Rare neg
Pseudoxanthomonas taiwanensis Proteobacteria Rare neg
Psychrobacter alimentarius Proteobacteria Unlikely + + neg + + + + + +
Psychrobacter arenosus Proteobacteria Unlikely neg + + + +
Psychrobacter cibarius Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Psychrobacter faecalis Proteobacteria Unlikely neg + neg + neg neg +
Psychrobacter fulvigenes Proteobacteria Rare neg neg neg neg neg neg neg
Psychrobacter maritimus Proteobacteria Unlikely neg
Psychrobacter namhaensis Proteobacteria Unlikely neg + neg + + + + + +
Psychrobacter phenylpyruvicus Proteobacteria Rare neg neg neg neg neg neg
Psychrobacter pulmonis Proteobacteria Unlikely neg neg neg neg
Pusillimonas faecalis Firmicutes Rare neg
Pygmaiobacter massiliensis Firmicutes Minor +
Pyramidobacter piscolens Synergistetes Minor neg neg
Rahnella aquatilis Proteobacteria Unlikely neg + + + + + +
Ralstonia mannitolilytica Proteobacteria Rare neg neg + neg + + + neg neg neg
Ralstonia pickettii Biovar Va-1&2 Proteobacteria Rare neg neg + neg + + + neg neg neg +
Raoultella ornithinolytica Proteobacteria Minor neg + neg + + neg + + + neg + + + neg +
Raoultella planticola Proteobacteria Rare neg + + + + + + + + + + + neg
Raoultella terrigena Proteobacteria Rare neg + + + + + + + + + +
Raoultibacter massiliensis Actinobacteria Rare + neg neg + neg neg + + + neg + neg + neg neg
Raoultibacter timonensis Actinobacteria Rare + + neg + neg neg + + + + + neg + neg neg
Rheinheimera perlucida Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Rhizobium metallidurans Proteobacteria Unlikely neg
Rhizorhabdus wittichii Proteobacteria Unlikely neg neg + + + + neg + + neg
Rhodanobacter ginsenosidimutans Proteobacteria Unlikely neg neg
Rhodococcus erythropolis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Rhodococcus hoagii Actinobacteria Rare +
Rhodococcus jostii Actinobacteria Non + + + +
Rhodococcus opacus Actinobacteria Unlikely + neg + + neg
Rhodococcus qingshengii Actinobacteria Unlikely +
Rhodococcus rhodochrous Actinobacteria Rare + neg neg neg neg neg
Rhodoplanes serenus Proteobacteria Unlikely neg
Rhodothermus marinus Bacteroidetes Non neg
Riemerella columbina Bacteroidetes Rare neg d + + d
Rikenella microfusus Bacteroidetes Rare neg neg neg d(+) + + neg neg neg neg
Risungbinella massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Robertmurraya andreesenii Firmicutes Unlikely +
Robertmurraya kyonggiensis Firmicutes Rare + neg + + neg neg + + + neg w + neg neg + neg
Robertmurraya massiliosenegalensis Firmicutes Rare + neg neg + neg neg
Robinsoniella peoriensis Firmicutes Rare + + + neg +
Romboutsia hominis Firmicutes Rare + neg neg + neg neg neg + neg neg neg neg neg neg neg neg
Romboutsia ilealis Firmicutes Rare vr neg w neg + neg w + neg neg neg neg neg neg neg neg
Romboutsia lituseburensis Firmicutes Minor + neg neg + neg neg neg + neg neg neg d neg neg neg neg
Romboutsia maritimum Firmicutes Rare +
Romboutsia timonensis Firmicutes Moderate + + + +
Romboutsia weinsteinii Firmicutes Rare +
Roseburia faecis Firmicutes Widespread vr neg
Roseburia hominis Firmicutes Widespread vr neg
Roseburia intestinalis Firmicutes Widespread vr + neg neg +
Roseburia inulinivorans Firmicutes Widespread vr neg
Roseobacter denitrificans Proteobacteria Non neg
Roseomonas gilardii Proteobacteria Rare neg + neg neg
Roseomonas mucosa Proteobacteria Rare neg neg
Rossellomorea aquimaris Firmicutes Unlikely vr neg neg + neg neg neg + neg neg neg + neg neg neg neg
Rossellomorea marisflavi Firmicutes Rare vr neg neg + neg neg w(+) + + neg neg + neg neg + neg
Rossellomorea vietnamensis Firmicutes Rare + neg neg + neg neg neg + d(neg) neg neg + neg neg neg neg
Rothia aeria Actinobacteria Minor + neg + neg neg neg neg
Rothia dentocariosa Actinobacteria Minor + neg neg + + + neg neg neg
Rothia halotolerans Actinobacteria Unlikely + + neg + neg neg + w + neg neg + neg + neg neg
Rothia koreensis Actinobacteria Rare +
Rothia kristinae Actinobacteria Rare + neg + d + + neg neg neg
Rothia mucilaginosa Actinobacteria Moderate + neg neg + + + d(+) neg neg neg neg
Rothia terrae Actinobacteria Rare + + + + neg neg
Rubeoparvulum massiliense Firmicutes Rare neg neg neg neg neg + neg neg + neg neg neg neg neg neg neg
Rubinisphaera brasiliensis Planctomycetes Non neg
Rubneribacter badeniensis Actinobacteria Minor + neg neg neg neg neg
Rubrobacter xylanophilus Actinobacteria Non +
Rudanella lutea Bacteroidetes Unlikely neg neg
Ruminiclostridium cellobioparum Firmicutes Rare vr
Ruminiclostridium cellulolyticum Firmicutes Unlikely + + + w + w neg w neg +
Ruminiclostridium herbifermentans Firmicutes Unlikely vr + +
Ruminiclostridium josui Firmicutes Rare + neg neg neg
Ruminococcus albus Firmicutes Moderate + neg d(neg) neg d + neg neg
Ruminococcus bicirculans Firmicutes Moderate +
Ruminococcus bovis Firmicutes Unlikely + neg neg + neg neg + + neg neg neg neg neg neg neg neg
Ruminococcus bromii Firmicutes Widespread + neg d(+) neg d(+) w d(w) neg neg neg neg
Ruminococcus callidus Firmicutes Widespread + neg neg neg + neg w
Ruminococcus champanellensis Firmicutes Moderate + neg neg neg neg
Ruminococcus flavefaciens Firmicutes Moderate + neg neg neg d(neg) neg neg neg
Ruminococcus gauvreauii Firmicutes Minor + neg + + + neg neg + neg
Ruminococcus gnavus Firmicutes Widespread + + neg + + neg neg neg +
Ruminococcus lactaris Firmicutes Widespread + neg neg + d + neg neg neg neg neg
Ruminococcus phoceensis Firmicutes Rare +
Ruminococcus torques Firmicutes Widespread + neg + + + vr w neg neg neg neg
Rummeliibacillus pycnus Firmicutes Unlikely + neg neg + neg neg
Rummeliibacillus stabekisii Firmicutes Rare + neg neg neg neg neg neg
Rummeliibacillus suwonensis Firmicutes Rare + neg
Ruoffia tabacinasalis Firmicutes Rare +
Ruthenibacterium lactatiformans Firmicutes Moderate neg neg + w w
Saccharibacillus brassicae Firmicutes Unlikely +
Saccharofermentans acetigenes Firmicutes Non + neg + neg + neg neg neg neg neg
Salimicrobium jeotgali Firmicutes Non + + neg + + + neg
Salinicoccus halodurans Firmicutes Unlikely + neg neg + neg neg neg + + neg neg + neg neg neg neg
Salinisphaera halophila Proteobacteria Non neg + + neg neg neg neg neg neg + + + neg + neg neg
Salinivibrio costicola Proteobacteria Rare neg neg + + neg
Salmonella bongori Proteobacteria Rare neg +
Salmonella enterica Proteobacteria Unlikely neg + + + +
Salmonella enterica subsp. arizonae Proteobacteria Non neg + + + + +
Salmonella enterica subsp. enterica serovar Choleraesuis Proteobacteria Unlikely neg neg + + + +
Salmonella enterica subsp. enterica serovar Enteritidis Proteobacteria Rare neg + + + + + d
Salmonella enterica subsp. enterica serovar Paratyphi A Proteobacteria Rare neg + + + + + neg
Salmonella enterica subsp. enterica serovar Typhi Proteobacteria Rare neg + + + + + d
Salmonella enterica subsp. enterica serovar Typhimurium Proteobacteria Rare neg + + + + +
Sanguibacter massiliensis Actinobacteria Rare +
Sarcina maxima Firmicutes Rare + + d + + + + neg +
Sarcina ventriculi Firmicutes Minor + d neg + + + + neg neg
Scardovia inopinata Actinobacteria Rare + neg neg + neg neg neg + neg neg + neg neg + neg
Scardovia wiggsiae Actinobacteria Minor + + + + + w neg + neg
Schaalia cardiffensis Actinobacteria Rare + neg + neg d neg neg
Schaalia hyovaginalis Actinobacteria Rare + + + + + + + + neg neg + neg
Schaalia meyeri Actinobacteria Rare + d + d + neg neg + neg +
Schaalia odontolytica Actinobacteria Moderate + d neg d d neg neg neg
Schaalia radingae Actinobacteria Rare + vr vr vr + + neg + +
Schaalia turicensis Actinobacteria Rare + d d d + d(+) neg + +
Schleiferilactobacillus harbinensis Firmicutes Unlikely + + + + d neg + + + neg neg neg neg + d neg
Schleiferilactobacillus perolens Firmicutes Unlikely + d d + d neg + + + neg neg neg neg + neg neg
Schleiferilactobacillus shenzhenensis Firmicutes Unlikely
Schlesneria paludicola Planctomycetes Unlikely neg
Schnuerera ultunensis Firmicutes Unlikely +
Sebaldella termitidis Fusobacteria Unlikely neg neg + + + + +
Sediminibacillus massiliensis Firmicutes Rare +
Sediminispirochaeta smaragdinae Spirochaetes Unlikely neg
Selenomonas artemidis Firmicutes Rare neg neg d neg + + neg d neg neg
Selenomonas bovis Firmicutes Rare neg
Selenomonas flueggei Firmicutes Rare neg neg + + + + neg d neg neg
Selenomonas infelix Firmicutes Rare neg neg + + + + neg neg neg neg
Selenomonas noxia Firmicutes Rare neg neg d neg d neg neg neg neg neg
Selenomonas ruminantium Firmicutes Minor neg neg + + neg +
Selenomonas sputigena Firmicutes Rare neg neg + + + neg neg neg neg neg
Selenomonas timonae Firmicutes Unlikely neg
Sellimonas intestinalis Firmicutes Minor + + + +
Senegalia massiliensis Firmicutes Rare + neg neg + + + + + + + + +
Senegalimassilia anaerobia Actinobacteria Minor + neg neg neg neg neg neg neg neg neg neg neg
Senegalimassilia faecalis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Serratia ficaria Proteobacteria Rare neg + + + + + + + + + + + neg neg + neg
Serratia fonticola Proteobacteria Rare neg + + + + + d(+) + neg d(+)
Serratia liquefaciens Proteobacteria Rare neg + + + w neg +
Serratia marcescens Proteobacteria Minor neg neg + + + + + + + neg + neg neg + neg
Serratia odorifera Proteobacteria Rare neg + + + + + +
Serratia quinivorans Proteobacteria Rare neg + + d
Serratia ureilytica Proteobacteria Rare neg neg + + neg +
Sharpea azabuensis Firmicutes Rare + neg + + + + neg neg neg
Shewanella algae Proteobacteria Unlikely neg neg neg neg d(w) neg neg + neg
Shewanella carassii Proteobacteria Rare neg neg neg neg
Shewanella decolorationis Proteobacteria Rare neg +
Shewanella xiamenensis Proteobacteria Rare neg +
Shigella boydii Proteobacteria Rare neg + d
Shigella dysenteriae Proteobacteria Unlikely neg neg + + neg
Shigella flexneri Proteobacteria Minor neg neg + neg neg
Shigella sonnei Proteobacteria Minor neg + + + + neg
Shuttleworthia satelles Firmicutes Rare + + + + +
Silanimonas lenta Proteobacteria Non neg neg + neg + + neg + neg
Skermanella aerolata Proteobacteria Unlikely neg + + neg neg neg + neg neg + neg + neg neg + +
Slackia equolifaciens Actinobacteria Rare + neg neg neg neg neg
Slackia exigua Actinobacteria Rare + neg neg neg neg neg neg
Slackia faecicanis Actinobacteria Rare + neg neg neg
Slackia heliotrinireducens Actinobacteria Rare +
Slackia isoflavoniconvertens Actinobacteria Rare + neg
Slackia piriformis Actinobacteria Minor + neg
Sneathia sanguinegens Fusobacteria Rare neg neg neg + + + neg neg neg neg
Sneathia vaginalis Fusobacteria Rare neg neg + neg
Sodaliphilus pleomorphus Bacteroidetes Rare neg
Soleaferrea massiliensis Firmicutes Rare +
Solibacillus silvestris Firmicutes Unlikely +
Solibaculum mannosilyticum Firmicutes Rare vr neg w + neg neg
Solobacterium moorei Firmicutes Minor + neg neg + + + neg neg + neg neg
Sorangium cellulosum Proteobacteria Rare neg
Sphaerotilus natans Proteobacteria Unlikely neg
Sphingobacterium alimentarium Bacteroidetes Unlikely neg neg neg + neg
Sphingobacterium faecium Bacteroidetes Rare neg + + + + neg + + + neg neg neg neg neg neg
Sphingobacterium mizutaii Bacteroidetes Unlikely neg + + + + + + + +
Sphingobacterium multivorum Bacteroidetes Rare neg + + + + + + + neg neg +
Sphingobacterium nematocida Bacteroidetes Unlikely neg neg + neg + neg neg + + neg neg neg neg neg neg neg
Sphingobacterium siyangense Bacteroidetes Rare neg neg neg +
Sphingobacterium spiritivorum Bacteroidetes Rare neg d(neg) neg + + + + neg neg +
Sphingobacterium thalpophilum Bacteroidetes Unlikely neg + + + + +
Sphingobium xenophagum Proteobacteria Unlikely neg neg neg neg neg neg
Sphingomonas adhaesiva Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Sphingomonas aerolata Proteobacteria Non neg
Sphingomonas aestuarii Proteobacteria Unlikely neg neg
Sphingomonas azotifigens Proteobacteria Rare neg + neg + + + + neg +
Sphingomonas bisphenolicum Proteobacteria Unlikely neg + neg +
Sphingomonas echinoides Proteobacteria Unlikely neg neg neg neg neg neg
Sphingomonas glacialis Proteobacteria Unlikely neg neg neg neg
Sphingomonas hankookensis Proteobacteria Rare neg
Sphingomonas koreensis Proteobacteria Unlikely neg neg neg neg w neg
Sphingomonas melonis Proteobacteria Rare neg + neg + + + + + neg +
Sphingomonas panni Proteobacteria Rare neg neg neg + + neg neg neg
Sphingomonas paucimobilis Proteobacteria Rare neg + + + + vr + neg neg +
Sphingomonas pseudosanguinis Proteobacteria Rare neg neg
Sphingomonas sinipercae Proteobacteria Unlikely neg + neg neg neg neg neg neg + neg + neg
Sphingomonas yabuuchiae Proteobacteria Rare neg neg
Sphingopyxis bauzanensis Proteobacteria Unlikely neg neg neg neg neg neg
Spiribacter roseus Proteobacteria Non neg
Spirochaeta coccoides Spirochaetes Rare neg
Spirochaeta thermophila Spirochaetes Non neg
Spirosoma linguale Bacteroidetes Unlikely neg + + + + + + + +
Sporobacter termitidis Firmicutes Rare +
Sporolactobacillus laevolacticus Firmicutes Unlikely + neg + d + + neg neg
Sporolactobacillus nakayamae subsp. racemicus Firmicutes Rare + neg + + + + d neg neg
Sporomusa termitida Firmicutes Unlikely neg
Sporosarcina aquimarina Firmicutes Non + neg neg + neg neg neg neg neg neg neg + neg + neg neg
Sporosarcina koreensis Firmicutes Unlikely + neg neg neg
Sporosarcina luteola Firmicutes Rare vr neg neg + + neg + + neg neg + neg neg neg neg
Sporosarcina siberiensis Firmicutes Unlikely + neg neg + neg neg + + neg neg neg neg neg neg neg
Stackebrandtia nassauensis Actinobacteria Unlikely + + + + + + + +
Staphylococcus arlettae Firmicutes Rare + + + + d(+) vr w(+) + neg
Staphylococcus aureus subsp. aureus Firmicutes Minor + neg neg + + + neg neg neg
Staphylococcus auricularis Firmicutes Rare + vr neg + neg + neg vr
Staphylococcus capitis subsp. capitis Firmicutes Rare + neg neg + vr + neg neg neg neg
Staphylococcus caprae Firmicutes Rare + neg neg neg + vr d neg neg
Staphylococcus carnosus Firmicutes Rare + neg neg + neg neg d + + neg neg w neg neg neg neg
Staphylococcus cohnii subsp. cohnii Firmicutes Rare + neg neg + neg neg neg neg neg
Staphylococcus condimenti Firmicutes Rare + neg neg + + + + neg
Staphylococcus devriesei Firmicutes Rare + neg + neg neg + + neg neg neg + + neg neg
Staphylococcus epidermidis Firmicutes Widespread + neg neg neg + d(+) + + neg vr neg neg
Staphylococcus equorum subsp. equorum Firmicutes Rare + neg + vr + neg neg
Staphylococcus gallinarum Firmicutes Rare + + + w + neg + +
Staphylococcus haemolyticus Firmicutes Minor + neg neg + d(+) vr neg neg vr neg
Staphylococcus hominis subsp. hominis Firmicutes Minor + neg + vr neg neg neg neg
Staphylococcus hyicus Firmicutes Rare + neg neg + neg + + + neg neg + neg neg
Staphylococcus intermedius Firmicutes Rare + neg neg + + vr + + neg
Staphylococcus kloosii Firmicutes Rare + d d(+) + w(+) vr neg + neg
Staphylococcus lugdunensis Firmicutes Rare + neg neg neg + vr + neg neg neg
Staphylococcus nepalensis Firmicutes Rare + + neg + neg neg + + + neg neg neg neg neg + neg
Staphylococcus pasteuri Firmicutes Minor + neg neg + + neg neg
Staphylococcus petrasii Firmicutes Rare + neg neg + neg neg d(neg) + + neg neg d neg neg neg neg
Staphylococcus pettenkoferi Firmicutes Rare + neg + d neg neg
Staphylococcus pseudintermedius Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg neg neg
Staphylococcus saccharolyticus Firmicutes Rare + neg neg neg + neg + + neg neg neg neg
Staphylococcus saprophyticus subsp. saprophyticus Firmicutes Rare + neg + vr neg neg neg
Staphylococcus schleiferi subsp. schleiferi Firmicutes Rare + neg + vr + neg neg
Staphylococcus simiae Firmicutes Rare + d + + + neg neg d
Staphylococcus simulans Firmicutes Rare + neg neg + neg vr + neg d(+) neg
Staphylococcus succinus subsp. succinus Firmicutes Unlikely + neg
Staphylococcus warneri Firmicutes Minor + neg neg + d(+) vr vr neg d neg
Staphylococcus xylosus Firmicutes Rare + + + + d(+) vr + neg d neg
Starkeya novella Proteobacteria Unlikely neg
Stenotrophomonas acidaminiphila Proteobacteria Unlikely neg
Stenotrophomonas bentonitica Proteobacteria Unlikely neg neg neg + + neg neg
Stenotrophomonas maltophilia Proteobacteria Minor neg neg neg d d neg
Stenotrophomonas rhizophila Proteobacteria Rare neg neg
Stomatobaculum longum Firmicutes Minor vr neg + neg neg neg
Streptobacillus hongkongensis Fusobacteria Rare neg
Streptobacillus moniliformis Fusobacteria Unlikely neg +
Streptococcus acidominimus Firmicutes Unlikely + neg + neg + neg neg neg neg neg
Streptococcus agalactiae Firmicutes Minor + neg neg neg + neg neg + + + neg + neg d neg neg
Streptococcus alactolyticus Firmicutes Rare + neg neg neg + neg neg + + + neg neg neg neg neg + neg
Streptococcus anginosus Firmicutes Widespread + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus anginosus subsp. whileyi Firmicutes Rare + neg + neg neg
Streptococcus australis Firmicutes Minor + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus caballi Firmicutes Rare + neg neg neg neg
Streptococcus canis Firmicutes Unlikely + neg neg + neg neg + + + neg neg + neg neg neg neg
Streptococcus castoreus Firmicutes Rare + neg + neg
Streptococcus constellatus subsp. constellatus Firmicutes Minor + neg neg + + + + neg d(neg) neg d(neg)
Streptococcus cristatus Firmicutes Minor + neg neg d(+) + + neg neg neg vr neg
Streptococcus danieliae Firmicutes Rare + neg + + neg
Streptococcus didelphis Firmicutes Rare + neg + +
Streptococcus downei Firmicutes Rare + neg + + + +
Streptococcus dysgalactiae Firmicutes Rare + neg neg + + + vr
Streptococcus dysgalactiae subsp. equisimilis Firmicutes Unlikely + neg + +
Streptococcus equi subsp. equi Firmicutes Rare + neg neg + + vr neg neg
Streptococcus equinus Firmicutes Moderate + neg neg + neg neg + + + neg neg neg neg neg neg neg
Streptococcus ferus Firmicutes Rare + neg neg + neg neg + + + neg neg neg neg d neg neg
Streptococcus gallolyticus subsp. gallolyticus Firmicutes Minor + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus gordonii Firmicutes Minor + neg neg neg + neg neg + + + neg neg neg d neg neg
Streptococcus gwangjuense Firmicutes Unlikely + +
Streptococcus henryi Firmicutes Rare + neg neg neg neg
Streptococcus hyovaginalis Firmicutes Rare + neg neg + neg neg + + + neg neg d neg neg neg
Streptococcus ilei Firmicutes Unlikely + neg neg + neg neg d + + neg neg d + + neg neg
Streptococcus infantarius Firmicutes Minor + vr neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus infantarius subsp. infantarius Firmicutes Minor + neg + neg neg
Streptococcus infantis Firmicutes Minor + neg neg + + neg + neg
Streptococcus intermedius Firmicutes Moderate + neg neg + + + neg neg neg neg neg
Streptococcus koreensis Firmicutes Unlikely + neg + neg
Streptococcus lactarius Firmicutes Rare + neg neg neg
Streptococcus lutetiensis Firmicutes Minor + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus macedonicus Firmicutes Rare + neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus merionis Firmicutes Rare + neg + neg neg
Streptococcus mitis Firmicutes Moderate + neg neg neg + neg neg + + + neg d(+) neg neg neg neg
Streptococcus mutans Firmicutes Moderate + neg neg neg + neg neg + + + neg neg neg d(+) neg neg
Streptococcus oralis Firmicutes Minor + neg neg neg + neg neg + + + neg vr neg vr neg neg
Streptococcus oralis subsp. tigurinus Firmicutes Rare + neg + + + + neg neg
Streptococcus orisratti Firmicutes Rare + neg neg + + + + neg
Streptococcus ovis Firmicutes Rare + neg + neg d(+)
Streptococcus pantholopis Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg
Streptococcus parasanguinis Firmicutes Widespread + neg neg neg + neg neg + + vr neg neg neg vr neg neg
Streptococcus parasuis Firmicutes Rare + neg + neg neg
Streptococcus parauberis Firmicutes Rare + neg neg neg + neg neg + + + neg neg + neg + neg neg
Streptococcus pasteurianus Firmicutes Minor + neg + neg d(neg)
Streptococcus periodonticum Firmicutes Unlikely + neg + neg
Streptococcus peroris Firmicutes Rare + neg neg neg + neg neg
Streptococcus pluranimalium Firmicutes Unlikely + neg neg + neg neg d + d(+) neg neg d neg neg neg neg
Streptococcus plurextorum Firmicutes Rare + neg neg + neg neg d + neg neg neg neg neg neg d neg
Streptococcus pneumoniae Firmicutes Minor + neg neg + + + neg neg neg neg
Streptococcus porci Firmicutes Rare + + neg + neg neg + + + neg + neg neg neg + neg
Streptococcus pseudopneumoniae Firmicutes Minor + neg neg + neg neg neg
Streptococcus pseudoporcinus Firmicutes Rare + + +
Streptococcus pyogenes Firmicutes Minor + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus rubneri Firmicutes Rare + neg neg + neg neg + + neg neg neg neg neg neg neg
Streptococcus salivarius Firmicutes Widespread + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus sanguinis Firmicutes Moderate + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus sinensis Firmicutes Rare + + + neg neg neg
Streptococcus sobrinus Firmicutes Minor + neg d + + neg neg + neg
Streptococcus suis Firmicutes Rare + neg neg neg + neg neg vr + + neg neg neg neg neg neg
Streptococcus thermophilus Firmicutes Widespread + neg neg + d(+) + + neg d(+) neg neg
Streptococcus thoraltensis Firmicutes Rare + + neg + neg neg + + + neg neg + neg vr neg
Streptococcus timonensis Firmicutes Minor + neg neg + neg neg neg + neg neg neg neg neg neg neg neg
Streptococcus uberis Firmicutes Rare + neg neg neg + neg neg + + + neg + neg d(+) neg neg
Streptococcus vestibularis Firmicutes Moderate + neg neg neg + neg neg + + + neg neg neg neg neg neg
Streptococcus viridans Firmicutes Rare + +
Streptomyces albus Actinobacteria Unlikely + w w w
Streptomyces flavogriseus Actinobacteria Unlikely +
Streptomyces hygroscopicus Actinobacteria Unlikely +
Streptomyces koyangensis Actinobacteria Rare +
Streptomyces lividans Actinobacteria Unlikely +
Streptomyces massiliensis Actinobacteria Unlikely +
Streptomyces misionensis Actinobacteria Rare +
Streptomyces specialis Actinobacteria Unlikely +
Streptomyces thermoviolaceus Actinobacteria Rare + neg neg neg
Streptomyces thermovulgaris Actinobacteria Unlikely +
Streptomyces violaceusniger Actinobacteria Unlikely +
Streptosporangium roseum Actinobacteria Unlikely +
Subdoligranulum formicile Firmicutes Rare neg
Subdoligranulum variabile Firmicutes Moderate neg neg
Succinatimonas hippei Proteobacteria Minor neg w + neg +
Succinivibrio dextrinosolvens Proteobacteria Rare neg + + + + w
Sulfurospirillum deleyianum Proteobacteria Rare neg neg
Sutcliffiella cohnii Firmicutes Unlikely + neg neg neg
Sutterella faecalis Proteobacteria Rare neg neg neg neg neg neg
Sutterella massiliensis Proteobacteria Rare neg
Sutterella megalosphaeroides Proteobacteria Rare neg neg neg
Sutterella parvirubra Proteobacteria Minor neg
Sutterella seckii Proteobacteria Rare neg
Sutterella stercoricanis Proteobacteria Rare neg neg neg
Sutterella timonensis Proteobacteria Rare neg
Sutterella wadsworthensis Proteobacteria Widespread neg neg neg neg neg neg neg neg neg
Symbiobacterium thermophilum Firmicutes Unlikely neg
Symbiobacterium toebii Firmicutes Unlikely neg
Syntrophobotulus glycolicus Firmicutes Unlikely neg
Syntrophococcus sucromutans Firmicutes Rare neg neg
Syntrophomonas zehnderi Firmicutes Rare vr
Tannerella forsythia Bacteroidetes Minor neg neg neg + + + + neg neg +
Tannerella serpentiformis Bacteroidetes Unlikely neg neg
Taonella mepensis Proteobacteria Unlikely neg w
Tatumella ptyseos Proteobacteria Rare neg + + + neg w
Tepidanaerobacter acetatoxydans Firmicutes Rare vr
Tepiditoga spiralis Thermotogae Unlikely neg
Terrahaemophilus aromaticivorans Proteobacteria Rare neg
Terribacillus aidingensis Firmicutes Rare + neg neg + neg neg + + neg neg neg neg neg neg neg neg
Terribacillus halophilus Firmicutes Unlikely + neg neg neg
Terrisporobacter glycolicus Firmicutes Minor + + + +
Terrisporobacter mayombei Firmicutes Rare + + + +
Terrisporobacter othiniensis Firmicutes Rare +
Terrisporobacter petrolearius Firmicutes Rare + +
Tessaracoccus massiliensis Actinobacteria Rare + + + + + + +
Tetragenococcus halophilus Firmicutes Unlikely + + + + + + neg neg + neg +
Tetragenococcus koreensis Firmicutes Rare + + + neg + + + neg neg + neg neg + neg
Tetragenococcus solitarius Firmicutes Rare + neg neg + neg neg + + + neg neg + neg neg + neg
Thalassobacillus devorans Firmicutes Non + + + +
Thauera terpenica Proteobacteria Rare neg
Thermaerobacter marianensis Firmicutes Non vr
Thermoanaerobacterium thermosaccharolyticum Firmicutes Rare neg + + + + + neg +
Thermobacillus composti Firmicutes Unlikely neg neg
Thermobispora bispora Actinobacteria Unlikely +
Thermoclostridium stercorarium Firmicutes Unlikely neg + neg + + + + + neg +
Thermolithobacter ferrireducens Firmicutes Non +
Thermomonas carbonis Proteobacteria Unlikely neg neg
Thermomonospora curvata Actinobacteria Unlikely +
Thermophilibacter immobilis Actinobacteria Unlikely +
Thermophilibacter mediterraneus Actinobacteria Rare +
Thermophilibacter provencensis Actinobacteria Minor +
Thermus scotoductus Deinococcus-Thermus Unlikely neg
Thiomonas islandica Proteobacteria Unlikely neg
Thomasclavelia saccharogumia Firmicutes Rare +
Thomasclavelia spiroformis Firmicutes Moderate + + neg + neg neg
Tidjanibacter inops Bacteroidetes Moderate
Tidjanibacter massiliensis Bacteroidetes Rare neg
Timonella senegalensis Actinobacteria Rare + + + + + neg
Tissierella praeacuta Firmicutes Rare + +
Trabulsiella guamensis Proteobacteria Rare neg + + + + + +
Tractidigestivibacter scatoligenes Actinobacteria Rare + neg + + + neg
Traorella massiliensis Firmicutes Rare neg neg neg neg neg neg neg neg neg neg neg neg + neg + neg neg
Treponema berlinense Spirochaetes Rare neg neg
Treponema brennaborense Spirochaetes Unlikely neg +
Treponema denticola Spirochaetes Rare neg
Treponema medium Spirochaetes Unlikely neg + + + + +
Treponema parvum Spirochaetes Unlikely neg
Treponema pectinovorum Spirochaetes Rare neg neg neg neg neg neg neg neg neg neg
Treponema pedis Spirochaetes Unlikely neg
Treponema peruense Spirochaetes Rare neg + + +
Treponema phagedenis Spirochaetes Unlikely neg
Treponema primitia Spirochaetes Unlikely neg
Treponema ruminis Spirochaetes Unlikely neg
Treponema socranskii Spirochaetes Unlikely neg + + + + d(+) + + +
Treponema succinifaciens Spirochaetes Rare neg + + + + neg neg +
Treponema vincentii Spirochaetes Rare neg
Tropheryma whipplei Actinobacteria Unlikely neg
Trueperella bernardiae Actinobacteria Rare + neg + + neg d(+) neg neg
Trueperella pyogenes Actinobacteria Rare + d neg + + + + neg + +
Tsukamurella pulmonis Actinobacteria Unlikely + neg + + + + neg neg
Tumebacillus avium Firmicutes Unlikely + neg +
Tumebacillus permanentifrigoris Firmicutes Unlikely +
Turicibacter sanguinis Firmicutes Moderate +
Turicimonas muris Proteobacteria Rare neg neg neg neg neg neg neg
Tyzzerella nexilis Firmicutes Widespread + neg neg
Ureaplasma parvum Tenericutes Rare unk neg
Ureaplasma urealyticum Tenericutes Rare unk
Ureibacillus massiliensis Firmicutes Rare neg neg neg neg
Ureibacillus suwonensis Firmicutes Unlikely neg neg neg neg
Ureibacillus thermosphaericus Firmicutes Non neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Urinicoccus timonensis Firmicutes Rare + neg neg neg neg neg + + neg neg neg neg neg neg neg neg
Urmitella timonensis Firmicutes Rare +
Uruburuella suis Proteobacteria Rare neg + +
Vaginimicrobium propionicum Actinobacteria Unlikely + + + neg +
Vagococcus carniphilus Firmicutes Rare + neg neg + + neg neg
Vagococcus fluvialis Firmicutes Rare + neg neg + neg neg neg + + neg neg + neg neg neg neg
Vagococcus lutrae Firmicutes Rare + neg + + neg neg
Vagococcus penaei Firmicutes Rare + neg + + neg
Vagococcus teuberi Firmicutes Rare + neg + + neg
Vampirovibrio chlorellavorus Cyanobacteria Unlikely neg
Varibaculum cambriense Actinobacteria Rare + neg d + neg vr neg d
Varibaculum timonense Actinobacteria Rare + neg neg neg neg neg
Variovorax boronicumulans Proteobacteria Rare neg neg
Variovorax ginsengisoli Proteobacteria Unlikely neg neg
Variovorax paradoxus Proteobacteria Unlikely neg
Veillonella atypica Firmicutes Widespread neg neg neg neg neg
Veillonella denticariosi Firmicutes Rare neg neg neg neg
Veillonella dispar Firmicutes Moderate neg neg neg neg neg neg
Veillonella infantium Firmicutes Rare neg
Veillonella magna Firmicutes Rare neg neg
Veillonella montpellierensis Firmicutes Rare neg neg neg neg neg neg neg neg
Veillonella nakazawae Firmicutes Rare neg
Veillonella parvula Firmicutes Widespread neg neg neg neg neg neg neg neg neg
Veillonella ratti Firmicutes Rare neg neg
Veillonella rodentium Firmicutes Unlikely neg
Veillonella rogosae Firmicutes Minor neg neg
Veillonella tobetsuensis Firmicutes Minor neg
Vescimonas coprocola Firmicutes Rare neg
Vescimonas fastidiosa Firmicutes Rare neg
Vibrio alginolyticus Proteobacteria Rare neg neg neg d(neg) + + neg neg
Vibrio cholerae Proteobacteria Unlikely neg neg d + d(+) neg neg
Vibrio cincinnatiensis Proteobacteria Rare neg + + + + neg d
Vibrio fluvialis Proteobacteria Rare neg + + + + d neg neg
Vibrio furnissii Proteobacteria Rare neg + + + + d d neg
Vibrio metoecus Proteobacteria Rare neg neg +
Vibrio metschnikovii Proteobacteria Rare neg neg d + + neg neg
Vibrio mimicus Proteobacteria Rare neg neg neg + + + neg neg
Vibrio natriegens Proteobacteria Rare neg + + neg + d + d d neg
Vibrio neptunius Proteobacteria Unlikely neg + neg
Vibrio parahaemolyticus Proteobacteria Rare neg d(+) d(+) + + neg neg
Vibrio proteolyticus Proteobacteria Rare neg neg neg + + neg neg
Vibrio rumoiensis Proteobacteria Unlikely neg + + + + +
Vibrio vulnificus Proteobacteria Rare neg neg + + + neg neg
Victivallis vadensis Lentisphaerae Minor neg +
Virgibacillus dakarensis Firmicutes Rare +
Virgibacillus dokdonensis Firmicutes Rare vr neg neg + neg + + + neg + neg
Virgibacillus doumboii Firmicutes Rare + neg neg neg + neg
Virgibacillus halodenitrificans Firmicutes Rare vr neg neg + neg + + + neg + neg
Virgibacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg neg neg neg neg neg
Virgibacillus massiliensis Firmicutes Rare +
Virgibacillus ndiopensis Firmicutes Rare + neg neg + neg neg neg neg neg neg neg neg neg neg neg neg
Virgibacillus pantothenticus Firmicutes Rare + + + d neg + + neg + + neg + neg
Virgibacillus profundi Firmicutes Unlikely vr neg + w w w neg neg
Virgibacillus proomii Firmicutes Rare + neg neg + neg neg + + + neg d + neg + neg neg
Virgibacillus salexigens Firmicutes Unlikely + + + + + neg d
Virgibacillus senegalensis Firmicutes Non + neg neg neg neg neg
Virgibacillus siamensis Firmicutes Unlikely + neg neg neg + neg + + +
Vitreoscilla massiliensis Proteobacteria Rare neg
Vitreoscilla stercoraria Proteobacteria Rare neg
Weeksella virosa Firmicutes Rare neg neg neg neg neg neg
Weissella cibaria Firmicutes Minor + + neg + neg neg neg + + neg neg neg neg neg + neg
Weissella confusa Firmicutes Minor + neg neg neg + neg neg + + + neg + neg neg neg
Weissella paramesenteroides Firmicutes Minor + + neg + neg neg + + + neg + neg neg neg neg
Weissella viridescens Firmicutes Minor + neg neg neg neg
Weizmannia coagulans Firmicutes Rare + d neg + neg neg + + + neg d d neg neg d neg
Winkia neuii Actinobacteria Rare + neg + d d + + + + neg + neg d + neg
Wolinella succinogenes Proteobacteria Rare neg
Xanthomonas massiliensis Proteobacteria Unlikely neg
Xylanimonas cellulosilytica Actinobacteria Rare + + + + + + + + +
Yangia pacifica Proteobacteria Non neg
Yersinia aldovae Proteobacteria Rare neg d(+) neg + + + + + + neg + neg
Yersinia aleksiciae Proteobacteria Rare neg + + + neg
Yersinia alsatica Proteobacteria Rare neg + neg + + neg + + + neg + + + neg + neg
Yersinia artesiana Proteobacteria Rare neg + neg + neg neg + + + neg neg + + neg + neg
Yersinia bercovieri Proteobacteria Rare neg + + + + + + neg neg +
Yersinia enterocolitica subsp. enterocolitica Proteobacteria Unlikely neg + + neg + + + + neg + + d(neg) neg
Yersinia frederiksenii Proteobacteria Rare neg + neg + + + + + + + + neg
Yersinia intermedia Proteobacteria Rare neg + neg + + + + + + + + neg
Yersinia kristensenii subsp. kristensenii Proteobacteria Rare neg + neg + + + + neg + + + neg
Yersinia kristensenii subsp. rochesterensis Proteobacteria Rare neg + + + neg + +
Yersinia massiliensis Proteobacteria Rare neg + neg + +
Yersinia mollaretii Proteobacteria Rare neg + neg + + neg + +
Yersinia occitanica Proteobacteria Rare neg + neg + neg neg + + + neg neg + d(+) neg + neg
Yersinia pestis Proteobacteria Non neg + + + + neg neg +
Yersinia proxima Proteobacteria Rare neg + neg + neg neg + + + neg neg + + neg + neg
Yersinia pseudotuberculosis Proteobacteria Unlikely neg neg + + + + + + + neg neg +
Yersinia rohdei Proteobacteria Rare neg neg vr + neg +
Yersinia vastinensis Proteobacteria Rare neg + neg + + neg + + + neg + + + neg + neg
Yokenella regensburgei Proteobacteria Rare neg + + + + neg + + + + neg neg +
Yonghaparkia alkaliphila Actinobacteria Non +
Zunongwangia profunda Bacteroidetes Non neg + + neg neg

Click on table headings to sort. Table abbreviations: Arab - arabinose; LAra - L-arabinose; DAra - D-arabinose; Fruc - fructose; LFuc - fucose; DFuc - D-fucose; Gal - galactose; Glc - glucose; Man - mannose; DLyx - D-lyxose; Rham - rhamnose; Rib - ribose; Sorb - sorbose; Taga - D-tagatose; DXyl - xylose; LXyl - L-xylose;

Oligosaccharides
Bacteria Phylum Coloniser Gram Cell Gent Lact Malt Melz Melb Raff Sucr Treh Tura
Abiotrophia defectiva Firmicutes Minor + neg neg neg + neg neg + + neg
Absiella argi Firmicutes Rare + + neg neg neg neg neg
Absiella innocuum Firmicutes Moderate
Absiella tortuosum Firmicutes Rare + neg neg neg neg w w + +
Acetanaerobacterium elongatum Firmicutes Rare + + neg + neg + + neg
Acetatifactor muris Firmicutes Rare + neg neg
Acetitomaculum ruminis Firmicutes Rare +
Acetivibrio cellulolyticus Firmicutes Rare neg + neg neg neg neg neg neg neg
Acetivibrio clariflavus Firmicutes Unlikely vr neg
Acetivibrio ethanolgignens Firmicutes Minor neg w + + neg w neg neg
Acetivibrio saccincola Firmicutes Unlikely +
Acetivibrio thermocellus Firmicutes Unlikely neg neg neg
Acetoanaerobium sticklandii Firmicutes Rare + neg w(+) neg
Acetobacter pasteurianus Proteobacteria Unlikely neg
Acetobacterium woodii Firmicutes Rare +
Acetomicrobium hydrogeniformans Synergistetes Unlikely neg
Achromobacter denitrificans Proteobacteria Unlikely neg neg neg neg neg neg
Achromobacter insuavis Proteobacteria Unlikely neg
Achromobacter spanius Proteobacteria Unlikely neg neg
Achromobacter xylosoxidans Proteobacteria Rare neg neg neg neg neg neg
Acidaminococcus fermentans Firmicutes Widespread neg d(w) d(w) neg neg neg neg neg
Acidaminococcus intestini Firmicutes Moderate neg neg neg neg neg
Acidaminococcus massiliensis Firmicutes Rare neg
Acidaminococcus provencensis Firmicutes Rare neg neg neg neg neg neg neg neg neg neg neg
Acidaminococcus timonensis Firmicutes Rare neg
Acidipropionibacterium acidipropionici Actinobacteria Rare + + + + + + neg neg + + +
Acidipropionibacterium jensenii Actinobacteria Rare + vr vr neg + + + + + + +
Acidisarcina polymorpha Acidobacteria Rare neg
Acidovorax facilis Proteobacteria Rare neg neg
Acidovorax sp. strain KKS102 Proteobacteria Rare neg
Acidovorax temperans Proteobacteria Rare neg neg
Acidovorax wautersii Proteobacteria Rare neg +
Acinetobacter baumannii Proteobacteria Unlikely neg neg
Acinetobacter bereziniae Proteobacteria Unlikely neg
Acinetobacter calcoaceticus Proteobacteria Rare neg neg neg neg neg
Acinetobacter guillouiae Proteobacteria Rare neg neg neg neg
Acinetobacter haemolyticus Proteobacteria Unlikely neg
Acinetobacter idrijaensis Proteobacteria Rare
Acinetobacter johnsonii Proteobacteria Rare neg neg neg neg neg
Acinetobacter junii Proteobacteria Rare neg
Acinetobacter lwoffii Proteobacteria Unlikely neg neg
Acinetobacter parvus Proteobacteria Unlikely neg
Acinetobacter pittii Proteobacteria Unlikely neg neg neg neg neg
Acinetobacter radioresistens Proteobacteria Rare neg
Acinetobacter schindleri Proteobacteria Unlikely neg
Acinetobacter septicus Proteobacteria Unlikely neg
Acinetobacter towneri Proteobacteria Unlikely neg neg neg neg neg neg neg
Acinetobacter ursingii Proteobacteria Unlikely neg
Acinetobacter variabilis Proteobacteria Unlikely neg
Actinobacillus capsulatus Proteobacteria Rare neg + d(+) + + neg + + + + neg
Actinobacillus minor Proteobacteria Unlikely neg + + +
Actinobacillus pleuropneumoniae Proteobacteria Rare neg neg d + neg d + neg
Actinobacillus succinogenes Proteobacteria Rare neg + + + neg neg + + neg neg
Actinobacillus ureae Proteobacteria Non neg neg
Actinobaculum massiliense Actinobacteria Minor + neg + w +
Actinomyces bouchesdurhonensis Actinobacteria Unlikely + + + +
Actinomyces canis Actinobacteria Non + + + neg neg d d neg
Actinomyces dentalis Actinobacteria Non + + w + neg + + + +
Actinomyces georgiae Actinobacteria Non + neg + + neg neg + +
Actinomyces gerencseriae Actinobacteria Unlikely + d(+) + + d(+) d(+) + + +
Actinomyces graevenitzii Actinobacteria Minor + neg neg + + vr neg vr + vr
Actinomyces ihuae Actinobacteria Rare + + neg +
Actinomyces israelii Actinobacteria Non + + + + +
Actinomyces johnsonii Actinobacteria Rare + neg + neg d
Actinomyces marseillensis Actinobacteria Rare + neg + +
Actinomyces massiliensis Actinobacteria Rare + neg neg + + + neg neg + + +
Actinomyces mediterranea Actinobacteria Rare +
Actinomyces minihominis Actinobacteria Rare +
Actinomyces naeslundii Actinobacteria Minor + d d + neg neg + d
Actinomyces oris Actinobacteria Rare + neg d + neg neg + d
Actinomyces pacaensis Actinobacteria Rare +
Actinomyces polynesiensis Actinobacteria Rare + + + + + + +
Actinomyces provencensis Actinobacteria Rare +
Actinomyces sp. ph3 Actinobacteria Rare +
Actinomyces timonensis Actinobacteria Rare + neg neg + + + + + + + neg
Actinomyces urogenitalis Actinobacteria Rare + + + + + + + +
Actinomyces viscosus Actinobacteria Minor + vr + neg + + +
Actinosynnema mirum Actinobacteria Non + + + + + + +
Actinotignum schaalii Actinobacteria Rare + neg + neg neg neg d d
Acutalibacter muris Firmicutes Rare +
Acutalibacter timonensis Firmicutes Minor
Adhaeribacter aquaticus Bacteroidetes Unlikely neg
Adlercreutzia caecimuris Actinobacteria Rare +
Adlercreutzia equolifaciens Actinobacteria Moderate +
Adlercreutzia equolifaciens subsp. celatus Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Adlercreutzia hattorii Actinobacteria Rare +
Adlercreutzia mucosicola Actinobacteria Rare +
Adlercreutzia rubneri Actinobacteria Rare + neg
Aeribacillus pallidus Firmicutes Unlikely + + d + +
Aerococcus vaginalis Firmicutes Non + neg neg neg + neg neg neg neg neg neg
Aerococcus viridans Firmicutes Rare + + neg + + neg neg neg + neg neg
Aeromicrobium massiliense Actinobacteria Rare +
Aeromicrobium tamlense Actinobacteria Rare +
Aeromonas allosaccharophila Proteobacteria Rare neg + neg + vr vr + +
Aeromonas bestiarum Proteobacteria Rare neg neg d + neg neg + +
Aeromonas caviae Proteobacteria Unlikely neg vr w + neg + +
Aeromonas dhakensis Proteobacteria Rare neg neg neg neg + neg neg neg + + neg
Aeromonas encheleia Proteobacteria Unlikely neg neg neg + neg neg d(+) +
Aeromonas enteropelogenes Proteobacteria Rare neg + + neg +
Aeromonas eucrenophila Proteobacteria Non neg + neg +
Aeromonas hydrophila Proteobacteria Unlikely neg neg neg + + +
Aeromonas hydrophila subsp. hydrophila Proteobacteria Unlikely neg neg neg +
Aeromonas jandaei Proteobacteria Rare neg neg + neg neg neg +
Aeromonas media Proteobacteria Rare neg + + + +
Aeromonas popoffii Proteobacteria Unlikely neg neg neg + neg neg neg +
Aeromonas salmonicida Proteobacteria Unlikely neg neg + + neg neg neg d +
Aeromonas schubertii Proteobacteria Non neg neg neg + neg neg neg +
Aeromonas sobria Proteobacteria Rare neg d(+) + neg neg +
Aeromonas taiwanensis Proteobacteria Non neg neg neg neg + neg neg + + + neg
Aeromonas tecta Proteobacteria Rare neg neg neg neg neg
Aeromonas trota Proteobacteria Rare neg + neg
Aeromonas veronii Proteobacteria Rare neg d(+) neg + neg + +
Aestuariimicrobium kwangyangense Actinobacteria Rare + + + + + + + + +
Afipia birgiae Proteobacteria Unlikely neg neg neg neg
Afipia broomeae Proteobacteria Rare neg neg neg neg
Afipia lausannensis Proteobacteria Unlikely neg neg neg neg
Africanella massiliensis Firmicutes Rare +
Agathobacter ruminis Firmicutes Rare + + + neg + neg neg neg + d(+) neg
Agathobaculum butyriciproducens Firmicutes Moderate + + + + + neg + +
Agathobaculum desmolans Firmicutes Minor + neg neg neg neg neg neg neg neg
Aggregatibacter actinomycetemcomitans Proteobacteria Rare neg neg + neg neg neg neg neg
Aggregatibacter aphrophilus Proteobacteria Minor neg neg + + neg neg + + +
Aggregatibacter segnis Proteobacteria Minor neg neg neg w neg neg neg + neg
Agrilactobacillus composti Firmicutes Unlikely + neg neg + + + neg + +
Agrobacterium radiobacter Proteobacteria Unlikely neg + + + + +
Agrobacterium rhizogenes Proteobacteria Unlikely neg
Agrobacterium tumefaciens Proteobacteria Unlikely neg
Agrococcus casei Actinobacteria Rare + neg neg neg neg
Agrococcus jejuensis Actinobacteria Rare + neg neg neg
Agrococcus jenensis Actinobacteria Rare + + neg neg neg neg neg
Agrococcus terreus Actinobacteria Unlikely + + vr + + +
Akkermansia glycaniphila Verrucomicrobia Rare neg
Akkermansia muciniphila Verrucomicrobia Widespread neg neg neg neg neg neg neg neg
Alcaligenes faecalis Proteobacteria Rare neg neg neg neg neg
Alcaligenes faecalis subsp. faecalis Proteobacteria Unlikely neg neg neg neg neg
Aliagarivorans marinus Proteobacteria Rare neg + + + + + w w +
Aliarcobacter butzleri Proteobacteria Rare neg neg neg
Aliarcobacter cryaerophilus Proteobacteria Rare neg neg
Aliarcobacter skirrowii Proteobacteria Rare neg
Alicyclobacillus acidocaldarius Firmicutes Rare + + neg + +
Aliiruegeria sabulilitoris Proteobacteria Unlikely neg + + + neg + neg + +
Alistipes communis Bacteroidetes Rare neg w + + w + w +
Alistipes dispar Bacteroidetes Rare neg w + + w + + +
Alistipes finegoldii Bacteroidetes Moderate neg + + + neg neg + +
Alistipes ihumii Bacteroidetes Moderate neg +
Alistipes indistinctus Bacteroidetes Moderate neg + + + + + +
Alistipes inops Bacteroidetes Rare neg
Alistipes marseilloanorexicus Bacteroidetes Rare neg
Alistipes massiliensis Bacteroidetes Rare neg
Alistipes megaguti Bacteroidetes Rare neg + + + + neg + neg neg neg
Alistipes montrealensis Bacteroidetes Rare neg + + +
Alistipes obesi Bacteroidetes Moderate neg neg
Alistipes onderdonkii Bacteroidetes Moderate neg +
Alistipes onderdonkii subsp. vulgaris Bacteroidetes Rare neg w + + w + + +
Alistipes provencensis Bacteroidetes Rare neg neg neg + neg + neg + neg neg neg
Alistipes putredinis Bacteroidetes Widespread neg neg
Alistipes senegalensis Bacteroidetes Moderate neg neg
Alistipes shahii Bacteroidetes Widespread neg vr
Alistipes timonensis Bacteroidetes Moderate neg neg
Alkalibacillus halophilus Firmicutes Unlikely +
Alkalihalobacillus alcalophilus Firmicutes Unlikely +
Alkalihalobacillus gibsonii Firmicutes Rare +
Alkalihalobacillus halodurans Firmicutes Rare + + neg neg + neg neg neg + + neg
Alkalihalobacillus oshimensis Firmicutes Unlikely + neg neg + + + neg +
Alkaliphilus metalliredigens Firmicutes Rare +
Alkaliphilus oremlandii Firmicutes Non +
Alkaliphilus transvaalensis Firmicutes Non +
Alkanindiges illinoisensis Proteobacteria Non vr
Allisonella histaminiformans Firmicutes Minor neg
Allobaculum fili Firmicutes Rare + neg
Allobaculum mucilyticum Firmicutes Rare + neg
Alloprevotella rava Bacteroidetes Rare neg + + neg neg neg neg neg
Alloprevotella tannerae Bacteroidetes Minor neg neg + + neg d d d
Alloscardovia omnicolens Actinobacteria Minor + + + +
Alteracholeplasma palmae Tenericutes Rare unk
Alterileibacterium massiliense Firmicutes Rare neg
Amaricoccus kaplicensis Proteobacteria Unlikely neg neg neg +
Amedibacillus dolichus Firmicutes Minor + neg neg neg neg neg neg neg neg
Amedibacterium intestinale Firmicutes Rare + + neg + neg neg neg +
Aminipila butyrica Firmicutes Rare +
Aminipila terrae Firmicutes Rare + +
Aminomonas paucivorans Synergistetes Rare neg
Ammonifex degensii Firmicutes Non neg
Amycolatopsis alba Actinobacteria Rare + + + + neg + + neg +
Amycolatopsis mediterranei Actinobacteria Rare + + + + + + + +
Amycolatopsis thailandensis Actinobacteria Rare + + + + + + +
Amycolatopsis vancoresmycina Actinobacteria Unlikely +
Anaerobiospirillum succiniciproducens Proteobacteria Rare neg neg + vr vr + + vr
Anaerobiospirillum thomasii Proteobacteria Rare neg neg neg + neg neg neg
Anaerobutyricum hallii Firmicutes Widespread + neg w w neg neg d(neg) neg
Anaerobutyricum soehngenii Firmicutes Rare + + +
Anaerococcus hydrogenalis Firmicutes Rare + neg + neg neg + + neg
Anaerococcus jeddahensis Firmicutes Rare +
Anaerococcus lactolyticus Firmicutes Rare + + neg neg neg
Anaerococcus marasmi Firmicutes Rare + + neg + + neg + + + + +
Anaerococcus mediterraneensis Firmicutes Rare +
Anaerococcus murdochii Firmicutes Rare + neg
Anaerococcus obesiensis Firmicutes Rare +
Anaerococcus octavius Firmicutes Rare + neg neg neg neg neg neg neg
Anaerococcus prevotii Firmicutes Minor + neg neg neg + neg
Anaerococcus provencensis Firmicutes Rare +
Anaerococcus rubeinfantis Firmicutes Rare + neg neg neg + neg neg neg + neg neg
Anaerococcus senegalensis Firmicutes Rare + neg
Anaerococcus tetradius Firmicutes Rare + neg neg neg neg
Anaerococcus vaginalis Firmicutes Minor + neg + neg neg
Anaerocolumna aminovalerica Firmicutes Rare + neg neg neg neg neg
Anaerocolumna cellulosilytica Firmicutes Rare +
Anaerocolumna chitinilytica Firmicutes Rare +
Anaerocolumna sedimenticola Firmicutes Rare + + neg + + + + +
Anaerocolumna xylanovorans Firmicutes Rare +
Anaerofilum pentosovorans Firmicutes Rare +
Anaerofustis stercorihominis Firmicutes Minor + neg neg neg neg neg neg
Anaeroglobus geminatus Firmicutes Minor neg neg neg neg neg neg neg neg neg
Anaeromassilibacillus senegalensis Firmicutes Rare neg
Anaerorhabdus furcosa Firmicutes Rare neg
Anaerosalibacter bizertensis Firmicutes Rare +
Anaerosalibacter massiliensis Firmicutes Rare + neg neg neg
Anaerosphaera massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Anaerospora hongkongensis Firmicutes Rare neg
Anaerostipes butyraticus Firmicutes Rare + + + neg + + +
Anaerostipes caccae Firmicutes Moderate + neg neg neg + neg + w + +
Anaerostipes coli Firmicutes Rare + neg
Anaerostipes hadrus Firmicutes Moderate + d(w) d(+) d(+) neg neg neg w(+) neg
Anaerostipes hominis Firmicutes Rare vr
Anaerostipes rhamnosivorans Firmicutes Rare vr + + + +
Anaerostipes rhamnosus Firmicutes Rare +
Anaerotignum faecicola Firmicutes Rare + neg
Anaerotignum lactatifermentans Firmicutes Moderate neg
Anaerotignum neopropionicum Firmicutes Rare neg
Anaerotignum propionicum Firmicutes Rare + neg neg neg neg neg
Anaerotruncus colihominis Firmicutes Moderate + neg neg neg neg neg neg
Anaerotruncus massiliensis Firmicutes Rare neg neg + neg neg neg neg neg neg + neg
Anaerotruncus rubiinfantis Firmicutes Moderate +
Anaerovorax odorimutans Firmicutes Rare vr
Ancylobacter polymorphus Proteobacteria Rare neg + + + neg + neg neg
Aneurinibacillus aneurinilyticus Firmicutes Rare + neg neg + + + neg + neg
Aneurinibacillus migulanus Firmicutes Rare +
Angelakisella massiliensis Firmicutes Rare neg
Anoxybacillus flavithermus Firmicutes Non +
Anoxybacillus gonensis Firmicutes Unlikely +
Anoxynatronum sibiricum Firmicutes Rare +
Anseongella ginsenosidimutans Bacteroidetes Unlikely neg
Aquabacterium citratiphilum Proteobacteria Rare neg
Aquabacterium commune Proteobacteria Rare neg
Aquabacterium parvum Proteobacteria Rare neg
Aquamicrobium lusatiense Proteobacteria Unlikely neg
Aquincola tertiaricarbonis Proteobacteria Non neg
Arabia massiliensis Actinobacteria Rare neg
Arachnia propionica Actinobacteria Rare +
Arcanobacterium haemolyticum Actinobacteria Rare + + vr neg neg neg neg
Arthrobacter agilis Actinobacteria Non + neg
Arthrobacter castelli Actinobacteria Rare + neg neg neg
Arthrobacter citreus Actinobacteria Unlikely vr
Arthrobacter gandavensis Actinobacteria Unlikely + neg neg neg neg neg neg neg neg neg
Arthrobacter globiformis Actinobacteria Unlikely +
Arthrobacter koreensis Actinobacteria Unlikely +
Arthrobacter luteolus Actinobacteria Unlikely + neg + +
Arthrobacter parietis Actinobacteria Non + d d d
Arthrobacter pigmenti Actinobacteria Non + neg d d
Arthrobacter russicus Actinobacteria Unlikely +
Asaccharospora irregularis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Asticcacaulis biprosthecium Proteobacteria Unlikely neg
Asticcacaulis excentricus Proteobacteria Unlikely neg
Atlantibacter hermannii Proteobacteria Rare neg + d + neg d d +
Atopobium minutum Actinobacteria Minor + neg neg neg neg neg neg neg neg
Atopostipes suicloacalis Firmicutes Unlikely +
Aureimonas altamirensis Proteobacteria Unlikely neg neg w
Aureimonas ureilytica Proteobacteria Unlikely neg
Averyella dalhousiensis Proteobacteria Rare neg + w + neg neg neg +
Azoarcus pumilus Proteobacteria Rare neg
Azospirillum lipoferum Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Azotobacter vinelandii Proteobacteria Non neg
Bacilliculturomica massiliensis Firmicutes Rare +
Bacillus altitudinis Firmicutes Rare +
Bacillus amyloliquefaciens Firmicutes Rare + + + neg + neg d(+) neg + d(+) neg
Bacillus andreraoultii Firmicutes Rare + + neg neg + neg neg neg + + neg
Bacillus aneurinolyticus Firmicutes Rare + neg neg neg neg neg vr vr
Bacillus anthracis Firmicutes Non + neg neg neg + neg neg neg + + neg
Bacillus atrophaeus Firmicutes Rare + + vr neg d(+) neg neg neg + + neg
Bacillus badius DSM 23T Firmicutes Rare + neg neg neg neg neg neg + neg neg
Bacillus badius DSM 5610 Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Bacillus baekryungensis Firmicutes Non + + neg + neg + + + +
Bacillus benzoevorans Firmicutes Rare +
Bacillus caccae Firmicutes Rare +
Bacillus cereus Firmicutes Minor + d(+) neg neg + neg neg neg + + vr
Bacillus circulans Firmicutes Rare + + + + + d(neg) + + + + vr
Bacillus clausii Firmicutes Rare + + + neg + neg neg + + +
Bacillus cytotoxicus Firmicutes Rare + + neg + neg neg neg neg neg neg
Bacillus dakarensis Firmicutes Rare + neg neg neg neg neg + neg neg neg neg
Bacillus endophyticus Firmicutes Unlikely + neg neg + neg + d(+) + neg
Bacillus firmus Firmicutes Rare + vr neg vr + vr neg vr + d(+) vr
Bacillus fordii Firmicutes Rare neg neg neg neg neg neg neg neg neg neg
Bacillus halotolerans Firmicutes Rare + + + neg + neg neg + + + neg
Bacillus idriensis Firmicutes Rare + neg neg neg + neg neg + + neg
Bacillus infantis Firmicutes Rare +
Bacillus kwashiorkori Firmicutes Rare + neg neg + + + + + neg
Bacillus licheniformis Firmicutes Minor + + + + + neg d(+) + + + vr
Bacillus marasmi Firmicutes Rare + + + + + + + + + + +
Bacillus massilioanorexius Firmicutes Rare + w w neg neg neg +
Bacillus massiliogabonensis Firmicutes Unlikely neg neg neg neg neg + neg + neg neg neg
Bacillus massilionigeriensis Firmicutes Rare + neg neg neg
Bacillus mediterraneensis Firmicutes Rare + + neg neg + + neg neg + + neg
Bacillus methanolicus Firmicutes Non + neg d(+) d(+) neg d(+)
Bacillus mojavensis Firmicutes Rare + + neg + neg + +
Bacillus mycoides Firmicutes Rare + w neg neg + neg neg neg neg + neg
Bacillus niameyensis Firmicutes Rare + neg neg neg + neg neg neg neg + neg
Bacillus pakistanensis Firmicutes Rare + + neg neg neg neg neg neg + + neg
Bacillus phocaeensis Firmicutes Rare + + neg + + neg neg neg neg neg neg
Bacillus pseudofirmus Firmicutes Rare +
Bacillus pseudomycoides Firmicutes Unlikely +
Bacillus pumilus Firmicutes Rare + + + neg neg neg d(+) neg + + neg
Bacillus rubiinfantis Firmicutes Rare + neg neg + + neg + neg d + neg
Bacillus sinesaloumensis Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Bacillus siralis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Bacillus smithii Firmicutes Rare + neg neg neg d(+) neg neg neg neg + neg
Bacillus sonorensis Firmicutes Rare +
Bacillus subtilis Firmicutes Minor + + + neg + neg d(+) + + + neg
Bacillus testis Firmicutes Rare + + d + neg
Bacillus thuringiensis Firmicutes Rare + d(+) neg neg + neg neg neg + + neg
Bacillus timonensis Firmicutes Rare neg + + + + +
Bacillus tuaregi Firmicutes Rare + neg neg neg + neg neg neg neg + neg
Bacillus vallismortis Firmicutes Rare + + neg neg + neg neg + + + neg
Bacillus velezensis Variant polyfermenticus Firmicutes Rare + + neg + + neg neg + + + neg
Bacillus wiedmannii Firmicutes Rare + + neg neg + neg neg neg neg + neg
Bacteroides acidifaciens Bacteroidetes Moderate neg
Bacteroides bouchesdurhonensis Bacteroidetes Moderate neg + + + +
Bacteroides caccae Bacteroidetes Widespread neg d(+) + + + d(+) + + + +
Bacteroides caecimuris Bacteroidetes Rare neg + + + + + +
Bacteroides cellulosilyticus Bacteroidetes Moderate neg w w + neg w + neg
Bacteroides clarus Bacteroidetes Moderate neg + + + neg + + neg
Bacteroides congonensis Bacteroidetes Moderate neg + + + + neg + + + neg neg
Bacteroides coprosuis Bacteroidetes Rare neg neg
Bacteroides cutis Bacteroidetes Moderate neg
Bacteroides eggerthii Bacteroidetes Widespread neg d(+) + + neg neg neg neg neg
Bacteroides faecalis Bacteroidetes Rare neg w + + + + + +
Bacteroides faecichinchillae Bacteroidetes Rare neg + + + + + + +
Bacteroides faecis Bacteroidetes Moderate neg + + + neg + + neg
Bacteroides finegoldii Bacteroidetes Widespread neg + + + neg + + neg
Bacteroides fluxus Bacteroidetes Moderate neg + + + neg neg + +
Bacteroides fragilis Bacteroidetes Widespread neg d(+) + + neg w(+) + + neg
Bacteroides galacturonicus Bacteroidetes Rare neg neg neg neg neg neg
Bacteroides gallinarum Bacteroidetes Moderate neg + + + neg + + neg
Bacteroides graminisolvens Bacteroidetes Rare neg neg neg neg
Bacteroides helcogenes Bacteroidetes Rare neg + + + neg + + + neg
Bacteroides heparinolyticus Bacteroidetes Rare neg + + + neg +
Bacteroides ihuae Bacteroidetes Rare neg + + + + neg + + + + +
Bacteroides ilei Bacteroidetes Minor neg neg neg neg neg neg neg neg neg neg neg
Bacteroides intestinalis Bacteroidetes Widespread neg + + + neg + + neg
Bacteroides luhongzhouii Bacteroidetes Rare neg
Bacteroides luti Bacteroidetes Rare neg + w
Bacteroides mediterraneensis Bacteroidetes Moderate neg + neg + + + +
Bacteroides ndongoniae Bacteroidetes Minor neg neg neg neg
Bacteroides neonati Bacteroidetes Minor neg neg neg neg neg neg neg
Bacteroides nordii Bacteroidetes Moderate neg d + + neg + + neg
Bacteroides oleiciplenus Bacteroidetes Moderate neg + + + neg + + +
Bacteroides ovatus Bacteroidetes Widespread neg + + + + + + +
Bacteroides pectinophilus Bacteroidetes Moderate neg neg neg neg neg
Bacteroides propionicifaciens Bacteroidetes Rare neg + w + neg neg neg
Bacteroides pyogenes Bacteroidetes Minor neg d + d d d d
Bacteroides reticulotermitis Bacteroidetes Rare neg + + + neg + + neg
Bacteroides salyersiae Bacteroidetes Moderate neg d + + neg + + neg
Bacteroides sp. Strain D8 Bacteroidetes Rare neg neg + + neg + + neg
Bacteroides stercorirosoris Bacteroidetes Moderate neg + + + neg + + neg
Bacteroides stercoris Bacteroidetes Widespread neg neg + + neg neg + + neg
Bacteroides thetaiotaomicron Bacteroidetes Widespread neg + w + + + + +
Bacteroides timonensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg
Bacteroides togonis Bacteroidetes Minor neg + neg neg + + + neg
Bacteroides uniformis Bacteroidetes Widespread neg + + + w + + w
Bacteroides xylanisolvens Bacteroidetes Widespread neg + + + + + + +
Bacteroides zhangwenhongi Bacteroidetes Rare neg
Bacteroides zoogleoformans Bacteroidetes Rare neg d(+) d(neg) + neg d d(neg) + neg
Bariatricus massiliensis Firmicutes Minor +
Barnesiella intestinihominis Bacteroidetes Moderate neg w + + neg neg neg neg
Barnesiella viscericola Bacteroidetes Rare neg + neg + neg neg + neg
Bartonella vinsonii Proteobacteria Non neg neg neg neg
Bavariicoccus seileri Firmicutes Rare +
Bdellovibrio bacteriovorus Bdellovibrionota Moderate neg
Beduinella massiliensis Firmicutes Rare neg
Beduini massiliensis Firmicutes Rare neg neg neg neg
Beduinibacterium massiliense Firmicutes Rare +
Belnapia soli Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg neg
Berryella intestinalis Actinobacteria Rare +
Bhargavaea beijingensis Firmicutes Rare + neg neg neg neg neg neg neg +
Bhargavaea cecembensis Firmicutes Non + neg neg neg neg neg
Bifidobacterium adolescentis Actinobacteria Widespread + d + + + neg + + + d +
Bifidobacterium aerophilum Actinobacteria Rare + neg neg neg + neg w w + neg +
Bifidobacterium angulatum Actinobacteria Moderate + neg + + + neg + + + +
Bifidobacterium animalis Actinobacteria Moderate + d(+) d + + d + + + d(neg) neg
Bifidobacterium animalis subsp. lactis Actinobacteria Rare + neg + + + neg + + + neg neg
Bifidobacterium asteroides Actinobacteria Rare + + neg d neg + + + neg
Bifidobacterium avesanii Actinobacteria Rare + neg neg neg neg neg neg + + neg neg
Bifidobacterium biavatii Actinobacteria Rare + w + + neg neg + neg + neg neg
Bifidobacterium bifidum Actinobacteria Widespread + neg neg + neg neg neg vr neg neg
Bifidobacterium boum Actinobacteria Rare + neg neg d(neg) + neg + + + neg neg
Bifidobacterium breve Actinobacteria Widespread + vr vr + + neg + + neg +
Bifidobacterium callitrichidarum Actinobacteria Rare + + w + w neg + + + neg neg
Bifidobacterium catenulatum Actinobacteria Moderate + + vr + + neg + + vr vr
Bifidobacterium catenulatum subsp. kashiwanohense Actinobacteria Rare + + + + neg + + + neg
Bifidobacterium choerinum Actinobacteria Rare + neg + + neg + + + neg
Bifidobacterium coryneforme Actinobacteria Rare + + + + d(neg) + d + neg
Bifidobacterium cuniculi Actinobacteria Rare + neg neg + neg + neg + neg
Bifidobacterium dentium Actinobacteria Moderate + + + + + + + + + + +
Bifidobacterium eulemuris Actinobacteria Rare + neg + w neg + + w +
Bifidobacterium faecale Actinobacteria Rare + + + + + neg + + + + +
Bifidobacterium gallicum Actinobacteria Rare + neg neg neg + neg neg neg + neg +
Bifidobacterium imperatoris Actinobacteria Rare + neg + + + + neg +
Bifidobacterium indicum Actinobacteria Rare + + neg d neg + + + neg
Bifidobacterium lemurum Actinobacteria Rare + + + + + + + + + w
Bifidobacterium longum subsp. infantis Actinobacteria Moderate + neg neg + + d + + + d(neg) vr
Bifidobacterium longum subsp. longum Actinobacteria Widespread + neg neg + + d(+) + + + neg vr
Bifidobacterium longum subsp. suis Actinobacteria Rare + neg + + neg + + + neg
Bifidobacterium merycicum Actinobacteria Rare + d + + neg + + + neg
Bifidobacterium minimum Actinobacteria Rare + neg neg neg neg neg neg d neg
Bifidobacterium mongoliense Actinobacteria Unlikely + vr vr + + neg + + + neg +
Bifidobacterium moukalabense Actinobacteria Rare + neg + + + + + neg
Bifidobacterium myosotis Actinobacteria Rare + + neg + + w + + + d
Bifidobacterium pseudocatenulatum Actinobacteria Widespread + d(+) + + + neg + + + vr vr
Bifidobacterium pseudolongum Actinobacteria Minor + neg neg + + neg + + neg +
Bifidobacterium pseudolongum subsp. globosum Actinobacteria Rare + d + + neg + + + neg
Bifidobacterium pullorum subsp. gallinarum Actinobacteria Rare + d(+) + d(neg) + + + d(+)
Bifidobacterium pullorum subsp. saeculare Actinobacteria Rare + neg d +
Bifidobacterium ramosum Actinobacteria Rare + neg + + neg neg neg + neg neg neg
Bifidobacterium reuteri Actinobacteria Rare + w + + + w + + + w w
Bifidobacterium ruminantium Actinobacteria Minor + neg neg vr + neg + + + neg neg
Bifidobacterium saguini Actinobacteria Rare + + + + + neg + + + neg +
Bifidobacterium scardovii Actinobacteria Minor + + + + + vr + + + + +
Bifidobacterium stellenboschense Actinobacteria Rare + neg w + + + + + neg + +
Bifidobacterium subtile Actinobacteria Rare + d neg d(+) d(+) + + + d(neg)
Bifidobacterium thermacidophilum Actinobacteria Rare + vr vr + + + neg
Bifidobacterium thermophilum Actinobacteria Rare + neg neg neg + neg + + neg neg
Bifissio spartinae Bacteroidetes Rare neg
Bilophila wadsworthia Desulfobacterota Widespread neg neg
Bittarella massiliensis Firmicutes Moderate neg
Blastococcus massiliensis Actinobacteria Rare +
Blastomonas natatoria Proteobacteria Unlikely neg + + +
Blautia brookingsii Firmicutes Rare + neg
Blautia caecimuris Firmicutes Rare + + + + + +
Blautia coccoides Firmicutes Minor + + + + + + + + +
Blautia faecicola Firmicutes Rare + neg neg neg neg w neg w w neg neg
Blautia faecis Firmicutes Rare + neg neg neg neg neg neg neg
Blautia glucerasea Firmicutes Rare + + + + +
Blautia hansenii Firmicutes Moderate + neg + + neg w + neg neg
Blautia hominis Firmicutes Rare + + + + + + + + + + +
Blautia hydrogenotrophica Firmicutes Moderate + + neg neg
Blautia intestinalis Firmicutes Rare +
Blautia liquoris Firmicutes Rare +
Blautia luti Firmicutes Minor + + + + + + + +
Blautia marasmi Firmicutes Rare +
Blautia massiliensis Firmicutes Moderate neg + + + + + + + +
Blautia obeum Firmicutes Widespread + + + + + vr neg neg vr
Blautia phocaeensis Firmicutes Rare +
Blautia producta Firmicutes Widespread + + + + neg + + + neg neg
Blautia provencensis Firmicutes Rare +
Blautia pseudococcoides Firmicutes Rare + + + + + + + + +
Blautia schinkii Firmicutes Rare + + + + +
Blautia stercoris Firmicutes Minor + neg neg neg neg neg neg neg neg neg +
Blautia wexlerae Firmicutes Moderate + d d d d d
Bordetella bronchiseptica Proteobacteria Non neg
Bordetella hinzii Proteobacteria Unlikely neg neg neg neg neg
Bordetella trematum Proteobacteria Non neg neg neg neg neg
Bosea massiliensis Proteobacteria Rare neg neg
Brachybacterium conglomeratum Actinobacteria Rare + d(neg) d + neg neg d neg
Brachybacterium faecium Actinobacteria Unlikely + d + d
Brachybacterium ginsengisoli Actinobacteria Unlikely +
Brachybacterium massiliense Actinobacteria Rare + + neg + + neg + + + + +
Brachybacterium muris Actinobacteria Rare + + + neg neg +
Brachybacterium paraconglomeratum Actinobacteria Rare + w w + w w neg + neg
Brachymonas chironomi Proteobacteria Unlikely neg neg neg neg
Brachyspira aalborgi Spirochaetes Rare neg + + +
Brachyspira hyodysenteriae Spirochaetes Rare neg
Brachyspira pilosicoli Spirochaetes Unlikely neg + d(+) neg + +
Bradyrhizobium denitrificans Proteobacteria Rare neg
Bradyrhizobium elkanii Proteobacteria Rare neg
Bradyrhizobium ganzhouense Proteobacteria Unlikely neg
Bradyrhizobium icense Proteobacteria Unlikely neg
Bradyrhizobium japonicum Proteobacteria Rare neg
Bradyrhizobium neotropicale Proteobacteria Rare neg
Brassicibacter mesophilus Firmicutes Rare neg
Brenneria populi Li et al. 2015 Proteobacteria Rare neg d(neg) d d(neg) + neg + + + d(+) neg
Brevibacillus agri Firmicutes Unlikely + neg neg neg w neg neg neg w(neg) neg
Brevibacillus borstelensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Brevibacillus brevis Firmicutes Rare vr + neg + neg + +
Brevibacillus centrosporus Firmicutes Unlikely + + neg neg + neg neg neg + + neg
Brevibacillus choshinensis Firmicutes Rare + neg neg neg d
Brevibacillus formosus Firmicutes Unlikely + neg neg + neg neg neg neg
Brevibacillus laterosporus Firmicutes Rare vr + + neg
Brevibacillus massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Brevibacillus parabrevis Firmicutes Unlikely vr + + +
Brevibacillus thermoruber Firmicutes Non +
Brevibacterium aurantiacum Actinobacteria Unlikely + neg neg neg
Brevibacterium casei Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Brevibacterium celere Actinobacteria Rare + neg neg neg
Brevibacterium epidermidis Actinobacteria Rare + neg neg +
Brevibacterium ihuae Actinobacteria Rare +
Brevibacterium iodinum Actinobacteria Unlikely vr neg neg neg neg neg neg neg neg neg neg
Brevibacterium linens Actinobacteria Unlikely + neg neg neg neg neg neg neg neg neg neg
Brevibacterium luteolum Actinobacteria Rare +
Brevibacterium mcbrellneri Actinobacteria Unlikely +
Brevibacterium otitidis Actinobacteria Non +
Brevibacterium paucivorans Actinobacteria Rare +
Brevibacterium pityocampae Actinobacteria Rare + neg neg neg neg
Brevibacterium ravenspurgense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Brevibacterium samyangense Actinobacteria Rare + w w
Brevibacterium sanguinis Actinobacteria Rare + neg neg neg
Brevibacterium senegalense Actinobacteria Rare + neg neg neg
Brevundimonas aurantiaca Proteobacteria Rare neg
Brevundimonas bacteroides Proteobacteria Rare neg
Brevundimonas bullata Proteobacteria Rare neg neg neg neg neg
Brevundimonas diminuta Proteobacteria Rare neg neg neg neg neg neg
Brevundimonas intermedia Proteobacteria Rare neg
Brevundimonas nasdae Proteobacteria Rare neg +
Brevundimonas terrae Proteobacteria Rare neg neg neg neg neg neg
Brevundimonas vesicularis Proteobacteria Rare neg neg neg neg neg neg
Brochothrix thermosphacta Firmicutes Unlikely + + + + + vr w neg + + neg
Brucella anthropi Proteobacteria Unlikely neg + neg + neg + d(+)
Brucella cytisi Proteobacteria Rare neg
Brucella melitensis Proteobacteria Non neg
Brucella tritici Proteobacteria Unlikely neg neg neg
Buchnera aphidicola Proteobacteria Non neg
Bulleidia extructa Firmicutes Rare +
Burkholderia arboris Proteobacteria Rare neg + + +
Burkholderia cepacia Proteobacteria Rare neg + + + neg neg neg + +
Burkholderia gladioli Proteobacteria Unlikely neg d neg neg neg + neg neg +
Burkholderia mallei Proteobacteria Unlikely neg
Burkholderia multivorans Proteobacteria Rare neg + + + neg neg +
Burkholderia pseudomallei Proteobacteria Unlikely neg
Burkholderia pyrrocinia Proteobacteria Unlikely neg neg neg + neg
Burkholderia vietnamiensis Proteobacteria Rare neg + + + + d(+) +
Buttiauxella agrestis Proteobacteria Rare neg + + + + d d(neg) neg +
Butyribacter intestini Firmicutes Rare + + neg neg + neg + neg + neg +
Butyricicoccus faecihominis Firmicutes Rare + neg neg neg neg neg
Butyricicoccus porcorum Firmicutes Rare + neg + + neg w + neg
Butyricicoccus pullicaecorum Firmicutes Minor + + neg + neg neg + +
Butyricimonas faecalis Bacteroidetes Rare neg neg neg + neg neg neg neg neg neg
Butyricimonas faecihominis Bacteroidetes Rare neg neg neg + neg neg neg neg neg neg
Butyricimonas paravirosa Bacteroidetes Rare neg neg neg + neg neg neg neg neg neg neg
Butyricimonas phoceensis Bacteroidetes Rare neg +
Butyricimonas synergistica Bacteroidetes Minor neg neg neg + neg neg neg neg neg neg neg
Butyricimonas virosa Bacteroidetes Moderate neg neg neg + neg neg neg neg neg neg neg
Butyrivibrio crossotus Firmicutes Widespread neg neg + + neg neg neg neg neg
Butyrivibrio fibrisolvens Firmicutes Minor neg + + + neg + d
Butyrivibrio hungatei Firmicutes Unlikely neg
Butyrivibrio proteoclasticus Firmicutes Rare +
Caballeronia novacaledonica Proteobacteria Rare neg
Caecibacter massiliensis Firmicutes Rare
Caldibacillus thermoamylovorans Firmicutes Unlikely + + + w(+) + w(+) neg neg + + neg
Caldicellulosiruptor diazotrophicus Firmicutes Non +
Caldicoprobacter faecalis Firmicutes Unlikely neg + + + + +
Caloranaerobacter azorensis Firmicutes Non neg neg neg
Campylobacter avium Proteobacteria Non neg
Campylobacter coli Proteobacteria Unlikely neg neg
Campylobacter concisus Proteobacteria Minor neg neg neg
Campylobacter curvus Proteobacteria Rare neg neg
Campylobacter faecalis Proteobacteria Rare neg
Campylobacter fetus subsp. fetus Proteobacteria Rare neg
Campylobacter gracilis Proteobacteria Minor neg neg
Campylobacter hominis Proteobacteria Minor neg
Campylobacter hyointestinalis subsp. hyointestinalis Proteobacteria Unlikely neg
Campylobacter jejuni subsp. doylei Proteobacteria Rare neg
Campylobacter jejuni subsp. jejuni Proteobacteria Unlikely neg
Campylobacter lanienae Proteobacteria Rare neg
Campylobacter lari subsp. concheus Proteobacteria Rare neg
Campylobacter lari subsp. lari Proteobacteria Rare neg neg neg neg
Campylobacter mucosalis Proteobacteria Rare neg
Campylobacter peloridis Proteobacteria Rare neg
Campylobacter rectus Proteobacteria Rare neg neg
Campylobacter showae Proteobacteria Rare neg
Campylobacter sputorum Proteobacteria Non neg
Campylobacter troglodytis Proteobacteria Rare neg
Campylobacter upsaliensis Proteobacteria Rare neg neg
Campylobacter ureolyticus Proteobacteria Minor neg
Candidatus Babela massiliensis Candidatus Dependentiae Unlikely neg
Candidatus Dorea massiliensis Firmicutes Rare +
Candidatus Stoquefichus massiliensis Firmicutes Rare +
Capnocytophaga canimorsus Bacteroidetes Unlikely neg d + + neg neg neg neg
Capnocytophaga gingivalis Bacteroidetes Non neg neg + neg neg + neg
Capnocytophaga granulosa Bacteroidetes Rare neg + + +
Capnocytophaga leadbetteri Bacteroidetes Rare neg neg w(neg) neg neg neg
Capnocytophaga ochracea Bacteroidetes Rare neg neg d(+) + neg neg + + neg
Capnocytophaga sputigena Bacteroidetes Rare neg vr + neg neg + + neg
Capnocytophaga stomatis Bacteroidetes Unlikely neg + + d(+) +
Caproicibacter fermentans Firmicutes Rare neg
Cardiobacterium hominis Proteobacteria Rare neg neg neg + neg neg neg
Cardiobacterium valvarum Proteobacteria Rare neg neg neg neg
Carnobacterium divergens Firmicutes Non + + + neg + d neg neg + + neg
Carnobacterium inhibens Firmicutes Rare + + + w + neg neg neg + + neg
Carnobacterium maltaromaticum Firmicutes Unlikely + + + + + + + neg + + neg
Carnobacterium mobile Firmicutes Non + + d neg + neg neg neg + + neg
Casaltella massiliensis Firmicutes Rare neg
Catenibacillus scindens Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Catenibacterium mitsuokai Firmicutes Moderate + + + + neg neg neg
Catenulispora acidiphila Actinobacteria Unlikely +
Catonella morbi Firmicutes Rare neg d d d neg d(neg) + + d(neg)
Caulobacter vibrioides Proteobacteria Unlikely neg w + + neg neg neg +
Cedecea davisae Proteobacteria Rare neg + d(neg) + neg neg + +
Cedecea lapagei Proteobacteria Rare neg + d(+) + neg neg neg +
Cedecea neteri Proteobacteria Rare neg + w + neg neg + +
Cellulomonas carbonis Actinobacteria Unlikely + + + + neg + + + + +
Cellulomonas composti Actinobacteria Rare + + + w + + +
Cellulomonas denverensis Actinobacteria Rare + + + + neg d neg + +
Cellulomonas fimi Actinobacteria Rare +
Cellulomonas flavigena Actinobacteria Rare +
Cellulomonas hominis Actinobacteria Rare + + + + + neg neg neg +
Cellulomonas massiliensis Actinobacteria Rare +
Cellulomonas parahominis Actinobacteria Rare +
Cellulomonas timonensis Actinobacteria Rare + + neg neg + neg neg neg + + neg
Cellulosilyticum lentocellum Firmicutes Rare neg
Cellulosilyticum ruminicola Firmicutes Rare neg + w + neg neg neg neg neg
Cellulosimicrobium cellulans Actinobacteria Rare + + neg + neg + +
Centipeda periodontii Firmicutes Rare neg neg + + + + + + +
Cerasibacillus quisquiliarum Firmicutes Non + neg neg neg neg + neg neg + neg
Cetobacterium somerae Fusobacteria Rare neg
Chelatococcus asaccharovorans Proteobacteria Unlikely neg
Chitinophaga agri Bacteroidetes Unlikely neg
Chlamydia trachomatis Chlamydiae Non neg
Chloracidobacterium thermophilum Acidobacteria Non neg
Christensenella hongkongensis Firmicutes Minor + neg neg neg neg neg neg neg
Christensenella massiliensis Firmicutes Rare neg
Christensenella minuta Firmicutes Minor neg neg neg neg neg neg neg neg
Christensenella timonensis Firmicutes Minor neg
Chromobacterium violaceum Proteobacteria Unlikely neg neg neg neg neg neg neg d(neg) +
Chromohalobacter japonicus Proteobacteria Unlikely neg + + + neg
Chromohalobacter salexigens Proteobacteria Unlikely neg + + + neg
Chryseobacterium gallinarum Bacteroidetes Unlikely neg neg neg neg neg neg neg
Chryseobacterium gleum Bacteroidetes Unlikely neg neg neg + neg neg + d
Chryseobacterium hominis Bacteroidetes Rare neg neg neg + d neg
Chryseobacterium indologenes Bacteroidetes Rare neg neg neg + neg neg neg neg +
Chryseobacterium oranimense Bacteroidetes Rare neg neg neg neg
Chryseobacterium taklimakanense Bacteroidetes Rare neg neg + + neg neg
Chryseobacterium viscerum Bacteroidetes Non neg
Chryseomicrobium amylolyticum Firmicutes Rare + neg neg neg neg neg neg +
Citrobacter amalonaticus Proteobacteria Rare neg + d + neg neg neg +
Citrobacter braakii Proteobacteria Rare neg d(+) d(+) + + neg neg +
Citrobacter europaeus Proteobacteria Rare neg + + + + neg + + neg + neg
Citrobacter farmeri Proteobacteria Minor neg + neg + neg + + + +
Citrobacter freundii Proteobacteria Minor neg vr + + + vr vr +
Citrobacter gillenii Proteobacteria Rare neg + + neg +
Citrobacter intermedius Proteobacteria Unlikely neg
Citrobacter koseri Proteobacteria Minor neg + d(+) + neg neg d +
Citrobacter murliniae Proteobacteria Rare neg + + + neg d(neg) +
Citrobacter pasteurii Proteobacteria Rare neg + + + neg neg vr +
Citrobacter portucalensis Proteobacteria Rare neg + + + + neg + + + + neg
Citrobacter rodentium Proteobacteria Rare neg + + + neg neg neg +
Citrobacter sedlakii Proteobacteria Rare neg + + + + neg neg +
Citrobacter werkmanii Proteobacteria Rare neg neg d neg neg neg +
Citrobacter youngae Proteobacteria Rare neg d(+) d(neg) + neg neg neg +
Citroniella saccharovorans Firmicutes Rare + + neg
Cloacibacillus evryensis Synergistetes Minor neg
Cloacibacillus porcorum Synergistetes Rare neg
Cloacibacterium normanense Bacteroidetes Rare neg neg neg neg neg neg neg
Clostridioides difficile Firmicutes Widespread + neg neg neg vr neg vr vr
Clostridioides mangenotii Firmicutes Rare + neg
Clostridium acetobutylicum Firmicutes Rare + + + + neg + + vr w
Clostridium amazonense Firmicutes Rare +
Clostridium amazonitimonense Firmicutes Rare + neg neg neg
Clostridium aminobutyricum Firmicutes Rare + + + + w
Clostridium aminophilum Firmicutes Rare +
Clostridium amylolyticum Firmicutes Rare +
Clostridium anorexicamassiliense Firmicutes Rare +
Clostridium argentinense Firmicutes Rare +
Clostridium aurantibutyricum Firmicutes Rare + neg + + d neg + neg
Clostridium autoethanogenum Firmicutes Rare +
Clostridium baratii Firmicutes Minor + + + + neg vr neg + vr
Clostridium beijerinckii Firmicutes Minor + + + +
Clostridium boliviensis Firmicutes Rare +
Clostridium bornimense Firmicutes Rare vr
Clostridium botulinum Gp I Firmicutes Unlikely + neg
Clostridium botulinum Gp II Firmicutes Unlikely +
Clostridium botulinum Gp III Firmicutes Unlikely +
Clostridium botulinum Gp IV Firmicutes Unlikely +
Clostridium budayi Firmicutes Rare + w(+) d(+) w(+) neg neg neg neg neg
Clostridium butyricum Firmicutes Widespread + neg
Clostridium cadaveris Firmicutes Rare +
Clostridium cagae Firmicutes Rare + neg neg neg neg + neg neg neg neg +
Clostridium carboxidivorans Firmicutes Rare +
Clostridium carnis Firmicutes Rare +
Clostridium celatum Firmicutes Minor +
Clostridium cellulosi Firmicutes Unlikely neg + + neg + + + +
Clostridium cellulovorans Firmicutes Rare neg + +
Clostridium chartatabidum Firmicutes Rare + + d neg neg neg + neg
Clostridium chauvoei Firmicutes Rare + + + + + + + +
Clostridium cochlearium Firmicutes Minor +
Clostridium cocleatum Firmicutes Rare + + + neg d d + d
Clostridium colicanis Firmicutes Rare neg + + + neg neg neg + neg
Clostridium colinum Firmicutes Rare + neg neg w neg neg + + +
Clostridium combesii Firmicutes Rare + neg neg w neg neg neg neg neg
Clostridium culturomicium Firmicutes Rare +
Clostridium dakarense Firmicutes Rare + neg + +
Clostridium diolis Firmicutes Rare + + + w + neg +
Clostridium disporicum Firmicutes Minor + + + + + + +
Clostridium drakei Firmicutes Unlikely +
Clostridium estertheticum Firmicutes Unlikely + + +
Clostridium fallax Firmicutes Rare +
Clostridium felsineum Firmicutes Rare +
Clostridium fessum Firmicutes Rare + neg neg neg neg w neg neg
Clostridium gasigenes Firmicutes Unlikely + + neg + neg neg +
Clostridium haemolyticum Firmicutes Rare +
Clostridium herbivorans Firmicutes Rare + + +
Clostridium hylemonae Firmicutes Minor + neg neg vr neg neg + + neg
Clostridium ihumii Firmicutes Rare +
Clostridium innocuum Firmicutes Widespread + neg vr +
Clostridium intestinale Firmicutes Rare + neg +
Clostridium isatidis Firmicutes Unlikely + + neg + neg neg + +
Clostridium jeddahense Firmicutes Rare +
Clostridium jeddahitimonense Firmicutes Rare +
Clostridium kluyveri Firmicutes Unlikely vr
Clostridium leptum Firmicutes Widespread +
Clostridium magnum Firmicutes Rare neg
Clostridium malenominatum Firmicutes Rare +
Clostridium manihotivorum Firmicutes Rare +
Clostridium massiliamazoniense Firmicutes Rare + neg + neg
Clostridium massiliodielmoense Firmicutes Rare + neg + neg
Clostridium mediterraneense Firmicutes Rare +
Clostridium merdae Firmicutes Rare + neg + neg
Clostridium metallolevans Firmicutes Rare + + +
Clostridium methoxybenzovorans Firmicutes Rare +
Clostridium methylpentosum Firmicutes Moderate +
Clostridium minihomine Firmicutes Rare +
Clostridium moniliforme Firmicutes Rare + neg neg d(+) neg neg neg neg neg
Clostridium neonatale Firmicutes Minor +
Clostridium niameyense Firmicutes Rare + neg neg neg
Clostridium nigeriense Firmicutes Rare + + + +
Clostridium nitritogenes Firmicutes Rare + w(+) neg w(+) neg neg neg d(+) d(+)
Clostridium novyi A Firmicutes Rare +
Clostridium oceanicum Firmicutes Rare + neg + neg neg
Clostridium paraputrificum Firmicutes Moderate + + + neg neg neg
Clostridium pasteurianum Firmicutes Rare +
Clostridium perfringens Firmicutes Widespread + neg + + neg neg + +
Clostridium phoceensis Firmicutes Rare neg neg neg neg
Clostridium polyendosporum Firmicutes Rare +
Clostridium polynesiense Firmicutes Rare + + + neg + neg neg neg + + +
Clostridium polysaccharolyticum Firmicutes Rare neg + neg w neg neg neg
Clostridium populeti Firmicutes Rare neg + neg + neg + neg
Clostridium punense Firmicutes Rare +
Clostridium putrefaciens Firmicutes Minor +
Clostridium rectalis Firmicutes Rare + + neg neg neg + + neg + + +
Clostridium roseum Firmicutes Rare + + + neg neg neg neg + neg
Clostridium saccharobutylicum Firmicutes Unlikely +
Clostridium saccharoperbutylacetonicum Firmicutes Rare + + + + + + + + +
Clostridium sardiniense Firmicutes Rare + + + neg +
Clostridium sartagoforme Firmicutes Minor +
Clostridium saudiense Firmicutes Minor +
Clostridium scatologenes Firmicutes Rare +
Clostridium schirmacherense Firmicutes Unlikely +
Clostridium scindens Firmicutes Moderate + neg neg
Clostridium senegalense Firmicutes Rare +
Clostridium septicum Firmicutes Rare + neg neg neg neg neg
Clostridium sporogenes Firmicutes Minor + neg neg + neg neg neg +
Clostridium sporosphaeroides Firmicutes Minor +
Clostridium subterminale Firmicutes Rare + neg neg neg neg neg neg neg
Clostridium sulfidigenes Firmicutes Rare +
Clostridium symbiosum Firmicutes Widespread neg neg d(neg) neg neg neg + neg
Clostridium taeniosporum Firmicutes Unlikely +
Clostridium tertium Firmicutes Moderate + + + + + neg neg + + neg
Clostridium tetani Firmicutes Unlikely + neg neg neg neg neg neg neg
Clostridium thermarum Firmicutes Unlikely + + neg
Clostridium thermobutyricum Firmicutes Rare vr + + neg neg
Clostridium thiosulfatireducens Firmicutes Rare +
Clostridium transplantifaecale Firmicutes Rare + neg + + + + + + + + +
Clostridium tyrobutyricum Firmicutes Rare + neg neg neg neg neg neg neg
Clostridium vincentii Firmicutes Rare +
Clostridium viride Firmicutes Rare +
Colibacter massiliensis Firmicutes Rare + + +
Colidextribacter massiliensis Firmicutes Rare neg
Collinsella aerofaciens Actinobacteria Widespread + d(+) + + neg d(neg) + d(neg)
Collinsella bouchesdurhonensis Actinobacteria Minor + + + + + + neg + + + +
Collinsella ihumii Actinobacteria Rare + + + + + +
Collinsella intestinalis Actinobacteria Moderate + + neg neg neg neg neg neg
Collinsella massiliensis Actinobacteria Rare + neg neg neg neg neg neg + neg neg
Collinsella phocaeensis Actinobacteria Rare neg
Collinsella provencensis Actinobacteria Rare +
Collinsella stercoris Actinobacteria Minor + + + + neg neg
Collinsella tanakaei Actinobacteria Minor + + + + neg d + +
Collinsella vaginalis Actinobacteria Rare +
Comamonas aquatica Proteobacteria Non neg
Comamonas denitrificans Proteobacteria Rare neg
Comamonas kerstersii Proteobacteria Rare neg
Comamonas koreensis Proteobacteria Unlikely neg
Comamonas terrigena Proteobacteria Unlikely neg
Comamonas testosteroni Proteobacteria Rare neg
Comamonas thiooxydans Proteobacteria Rare neg
Companilactobacillus alimentarius Firmicutes Rare + + vr neg + neg neg neg + + neg
Companilactobacillus farciminis Firmicutes Rare + + + + w neg neg neg + w neg
Companilactobacillus mindensis Firmicutes Unlikely + + neg w neg neg neg neg neg
Companilactobacillus versmoldensis Firmicutes Unlikely + neg + + neg + neg neg neg
Conexibacter woesei Actinobacteria Rare +
Congobacterium massiliense Firmicutes Rare +
Coprobacillus cateniformis Firmicutes Moderate + + + + neg neg + +
Coprobacter fastidiosus Bacteroidetes Moderate neg neg + + neg + neg neg
Coprobacter secundus Bacteroidetes Moderate neg + + + neg + + +
Coprobacter secundus subsp. similis Bacteroidetes Rare neg + + + neg + + +
Coprococcus catus Firmicutes Widespread + neg neg w(neg) neg neg neg neg neg
Coprococcus comes Firmicutes Widespread + neg + + neg vr + + neg
Coprococcus eutactus Firmicutes Widespread + + + + + + + + neg
Coprococcus phoceensis Firmicutes Rare vr neg neg neg neg neg neg neg neg neg neg
Coraliomargarita akajimensis Verrucomicrobia Non neg neg neg neg neg neg neg + +
Coriobacterium glomerans Actinobacteria Unlikely + + neg + neg neg +
Corynebacterium accolens Actinobacteria Rare + neg + neg d neg
Corynebacterium afermentans Actinobacteria Rare + neg neg neg neg neg neg
Corynebacterium ammoniagenes Actinobacteria Rare + neg vr +
Corynebacterium amycolatum Actinobacteria Rare + d(neg) neg neg + neg d(neg) neg d d neg
Corynebacterium appendicis Actinobacteria Rare + neg neg d(+) neg neg neg neg neg
Corynebacterium argentoratense Actinobacteria Rare + neg neg neg neg
Corynebacterium aurimucosum Actinobacteria Rare + neg neg + neg neg + neg
Corynebacterium bouchesdurhonense Actinobacteria Rare +
Corynebacterium bovis Actinobacteria Rare + neg + neg neg d
Corynebacterium callunae Actinobacteria Unlikely + neg + neg + +
Corynebacterium casei Actinobacteria Rare + neg neg neg neg neg neg neg neg d(neg) neg
Corynebacterium coyleae Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Corynebacterium cystitidis Actinobacteria Rare + neg + neg neg +
Corynebacterium diphtheriae Actinobacteria Non vr d
Corynebacterium doosanense Actinobacteria Rare + neg
Corynebacterium durum Actinobacteria Minor + neg + + neg
Corynebacterium efficiens Actinobacteria Rare + neg +
Corynebacterium falsenii Actinobacteria Rare + neg neg d d neg neg neg neg + neg
Corynebacterium flavescens Actinobacteria Rare vr neg neg neg neg neg neg
Corynebacterium freneyi Actinobacteria Rare + d(neg) neg neg + neg neg neg + + d(+)
Corynebacterium genitalium Actinobacteria Rare + neg neg
Corynebacterium glaucum Actinobacteria Rare + neg neg neg neg + neg
Corynebacterium glucuronolyticum Actinobacteria Rare + vr d +
Corynebacterium glutamicum Actinobacteria Rare + neg + neg + +
Corynebacterium ihumii Actinobacteria Rare + + neg + + neg + + + + neg
Corynebacterium jeddahense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Corynebacterium jeikeium Actinobacteria Rare + neg neg d neg neg neg neg
Corynebacterium kroppenstedtii Actinobacteria Minor + neg w neg neg +
Corynebacterium lipophiloflavum Actinobacteria Rare + neg neg neg
Corynebacterium lujinxingii Actinobacteria Rare +
Corynebacterium matruchotii Actinobacteria Unlikely + +
Corynebacterium minutissimum Actinobacteria Rare + neg neg + neg neg + neg neg
Corynebacterium mucifaciens Actinobacteria Rare + neg neg neg neg neg neg vr neg neg
Corynebacterium neomassiliense Actinobacteria Rare + neg neg neg neg neg neg neg neg + neg
Corynebacterium otitidis Actinobacteria Rare + neg neg neg
Corynebacterium pacaense Actinobacteria Rare + neg neg neg neg neg neg neg + w neg
Corynebacterium propinquum Actinobacteria Rare + neg neg neg
Corynebacterium provencense Actinobacteria Rare +
Corynebacterium pseudodiphtheriticum Actinobacteria Rare +
Corynebacterium pseudogenitalium Actinobacteria Rare + + d
Corynebacterium pyruviciproducens Actinobacteria Rare + neg + +
Corynebacterium riegelii Actinobacteria Rare + neg neg neg + neg neg neg neg + neg
Corynebacterium sanguinis Actinobacteria Rare + neg neg
Corynebacterium simulans Actinobacteria Rare + neg neg neg neg neg neg neg + neg neg
Corynebacterium singulare Actinobacteria Rare + neg + + neg
Corynebacterium stationis Actinobacteria Rare + neg neg neg neg
Corynebacterium striatum Actinobacteria Rare + neg neg neg neg d vr
Corynebacterium suicordis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Corynebacterium sundsvallense Actinobacteria Rare + neg + neg neg + neg
Corynebacterium tuberculostearicum Actinobacteria Rare + neg vr neg vr d(+) vr
Corynebacterium ulcerans Actinobacteria Rare + neg + neg
Corynebacterium urealyticum Actinobacteria Rare + neg neg neg neg neg
Corynebacterium ureicelerivorans Actinobacteria Rare + neg neg neg neg neg
Corynebacterium urinapleomorphum Actinobacteria Rare +
Corynebacterium variabile Actinobacteria Unlikely + neg neg neg neg neg neg neg
Corynebacterium wankanglinii Actinobacteria Rare +
Corynebacterium xerosis Actinobacteria Rare + neg d(neg) neg + neg neg + + d(+)
Crassaminicella thermophila Firmicutes Unlikely +
Criibacterium bergeronii Firmicutes Rare vr
Cronobacter condimenti Proteobacteria Unlikely neg + + + + neg + + + + neg
Cronobacter muytjensii Proteobacteria Rare neg + + + + + +
Cronobacter sakazakii Proteobacteria Minor neg + + + + + + +
Cronobacter turicensis Proteobacteria Rare neg + + + neg neg +
Cruoricaptor ignavus Bacteroidetes Rare neg neg neg
Cryptobacterium curtum Actinobacteria Minor +
Culturomica massiliensis Bacteroidetes Rare neg
Cupriavidus metallidurans Proteobacteria Unlikely neg neg neg neg neg + neg neg neg
Curtobacterium flaccumfaciens Actinobacteria Unlikely + neg neg
Cutibacterium acnes Actinobacteria Moderate + neg neg neg neg neg neg
Cutibacterium acnes subsp. defendens Actinobacteria Rare + neg neg
Cutibacterium avidum Actinobacteria Rare + neg w + + w + +
Cutibacterium granulosum Actinobacteria Minor +
Cytophaga hutchinsonii Bacteroidetes Rare neg
Dakarella massiliensis Proteobacteria Rare neg + + + + + + +
Dakotella fusiforme Firmicutes Rare +
Dehalobacter restrictus Firmicutes Non neg
Dehalobacterium formicoaceticum Firmicutes Unlikely +
Dehalococcoides mccartyi Chloroflexi Unlikely unk
Deinococcus aquaticus Deinococcus-Thermus Unlikely neg
Deinococcus caeni Deinococcus-Thermus Unlikely neg
Deinococcus geothermalis Deinococcus-Thermus Non +
Deinococcus proteolyticus Deinococcus-Thermus Unlikely +
Deinococcus reticulitermitis Deinococcus-Thermus Unlikely neg
Deinococcus wulumuqiensis Deinococcus-Thermus Unlikely +
Delftia acidovorans Proteobacteria Rare neg
Delftia lacustris Proteobacteria Unlikely neg
Delftia tsuruhatensis Proteobacteria Rare neg
Dellaglioa algida Firmicutes Rare + d d d neg d d(neg) d(neg) + neg
Denitrobacterium detoxificans Actinobacteria Rare +
Dermabacter hominis Actinobacteria Rare + + + + + + + + + + +
Dermacoccus barathri Actinobacteria Non + neg neg neg neg neg neg neg
Dermacoccus nishinomiyaensis Actinobacteria Rare + neg neg
Desemzia incerta Firmicutes Rare + + + neg + + + +
Desnuesiella massiliensis Firmicutes Rare + + + +
Desulfitobacterium dichloroeliminans Firmicutes Unlikely +
Desulfitobacterium hafniense Firmicutes Minor neg neg neg neg neg neg neg neg
Desulfococcus multivorans Proteobacteria Rare neg
Desulfocurvibacter africanus Proteobacteria Unlikely neg
Desulfofarcimen acetoxidans Firmicutes Unlikely neg
Desulfomicrobium baculatum Proteobacteria Unlikely neg
Desulfomicrobium orale Proteobacteria Unlikely neg
Desulforamulus reducens Firmicutes Unlikely +
Desulforudis audaxviator Firmicutes Unlikely +
Desulfoscipio gibsoniae Firmicutes Rare neg
Desulfosporosinus youngiae Firmicutes Rare neg
Desulfotomaculum ruminis Firmicutes Unlikely +
Desulfovibrio desulfuricans Proteobacteria Minor neg
Desulfovibrio diazotrophicus Proteobacteria Rare neg
Desulfovibrio fairfieldensis Proteobacteria Minor neg
Desulfovibrio intestinalis Proteobacteria Rare neg
Desulfovibrio legallii Proteobacteria Rare +
Desulfovibrio longreachensis Proteobacteria Rare neg
Desulfovibrio piger Proteobacteria Moderate neg
Desulfovibrio trichonymphae Proteobacteria Non unk
Desulfovibrio vulgaris Proteobacteria Rare neg
Desulfurispirillum indicum Chrysiogenetes Unlikely neg
Desulfurobacterium thermolithotrophum Aquificae Non neg
Devosia chinhatensis Proteobacteria Rare neg
Devosia limi Proteobacteria Unlikely neg
Devosia riboflavina Proteobacteria Unlikely neg neg neg neg
Dialister hominis Firmicutes Rare neg
Dialister invisus Firmicutes Moderate neg neg neg neg neg neg neg neg
Dialister massiliensis Firmicutes Rare neg neg
Dialister micraerophilus Firmicutes Rare neg
Dialister pneumosintes Firmicutes Minor neg neg
Dialister propionicifaciens Firmicutes Rare neg
Dialister succinatiphilus Firmicutes Minor neg
Dielma fastidiosa Firmicutes Minor neg neg neg neg neg
Dietzia cercidiphylli Actinobacteria Unlikely +
Dietzia cinnamea Actinobacteria Rare + neg neg neg neg neg neg neg
Dietzia kunjamensis Actinobacteria Unlikely + neg neg neg neg +
Dietzia maris Actinobacteria Rare + neg neg neg neg neg
Dietzia natronolimnaea Actinobacteria Rare + neg neg
Dolosigranulum pigrum Firmicutes Unlikely + neg + neg d
Dorea faecis Firmicutes Minor
Dorea formicigenerans Firmicutes Widespread + + + neg neg neg neg neg
Dorea hylemonae Firmicutes Rare
Dorea longicatena Firmicutes Widespread + neg + + + neg w + neg neg
Dorea phocaeensis Firmicutes Rare neg neg neg neg neg neg neg neg neg neg
Dorea scindens Firmicutes Rare
Drancourtella massiliensis Firmicutes Rare + +
Dubosiella newyorkensis Firmicutes Rare +
Duncaniella dubosii Bacteroidetes Unlikely neg neg neg neg neg neg neg neg
Duncaniella muris Bacteroidetes Rare neg + + + neg + + neg
Duodenibacillus massiliensis Proteobacteria Minor +
Dyadobacter beijingensis Bacteroidetes Unlikely neg +
Dyadobacter fermentans Bacteroidetes Unlikely neg + +
Dysgonomonas capnocytophagoides Bacteroidetes Rare neg + + + + + neg
Dysgonomonas gadei Bacteroidetes Rare neg + + + + + + + +
Dysgonomonas massiliensis Bacteroidetes Rare neg + + +
Dysgonomonas mossii Bacteroidetes Rare neg + + + d + +
Dysosmobacter welbionis Firmicutes Moderate neg neg neg neg neg neg neg neg neg neg neg
Edwardsiella tarda Proteobacteria Minor neg neg neg + neg neg neg neg
Eggerthella guodeyinii Actinobacteria Rare +
Eggerthella lenta Actinobacteria Widespread + neg neg neg neg neg neg neg neg
Eggerthella sinensis Actinobacteria Rare + neg neg
Eggerthella timonensis Actinobacteria Rare + + + + + + + + + +
Eggerthia catenaformis Firmicutes Minor + + + + neg neg + d(+) +
Eikenella corrodens Proteobacteria Rare neg neg
Eisenbergiella massiliensis Firmicutes Moderate neg
Eisenbergiella tayi Firmicutes Moderate neg neg neg neg
Elizabethkingia meningoseptica Bacteroidetes Unlikely neg neg w(+) w(+) d neg neg w(+)
Elizabethkingia miricola Bacteroidetes Non neg neg + + neg neg +
Ellagibacter isourolithinifaciens Actinobacteria Rare +
Elusimicrobium minutum Elusimicrobia Unlikely neg neg neg neg neg neg neg neg neg neg w
Emergencia timonensis Firmicutes Minor +
Empedobacter brevis Bacteroidetes Rare neg neg neg + neg neg neg
Empedobacter falsenii Bacteroidetes Rare neg neg neg + neg neg neg neg neg neg
Enhydrobacter aerosaccus Proteobacteria Rare neg
Enorma massiliensis Actinobacteria Minor +
Enorma phocaeensis Actinobacteria Rare neg
Enorma timonensis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Ensifer adhaerens Proteobacteria Unlikely neg
Enterobacter asburiae Proteobacteria Minor neg + + + d(+) d(+) + +
Enterobacter cancerogenus Proteobacteria Minor neg + neg + neg neg neg +
Enterobacter cloacae Proteobacteria Moderate neg vr vr vr vr
Enterobacter cloacae subsp. dissolvens Proteobacteria Rare neg
Enterobacter himalayensis Proteobacteria Minor
Enterobacter hormaechei subsp. hormaechei Proteobacteria Minor neg neg + d + +
Enterobacter hormaechei subsp. steigerwaltii Proteobacteria Rare neg neg + + + +
Enterobacter hormaechei subsp. xiangfangensis Proteobacteria Rare neg + + + + neg + + + + neg
Enterobacter kobei Proteobacteria Rare neg + + + + neg + + + + d
Enterobacter ludwigii Proteobacteria Rare neg +
Enterobacter massiliensis Proteobacteria Rare neg + + + + neg neg neg +
Enterobacter mori Proteobacteria Rare neg
Enterobacter roggenkampii Proteobacteria Rare neg
Enterobacter soli Proteobacteria Rare neg + +
Enterobacter timonensis Proteobacteria Rare neg
Enterocloster aldenensis Firmicutes Minor + neg d(+) + neg + + vr
Enterocloster asparagiformis Firmicutes Moderate +
Enterocloster bolteae Firmicutes Widespread + neg + + neg neg + +
Enterocloster citroniae Firmicutes Moderate + neg neg + neg neg + vr
Enterocloster clostridioformis Firmicutes Widespread + vr neg + d(neg) vr + +
Enterocloster lavalensis Firmicutes Minor + vr + + neg vr vr + +
Enterococcus asini Firmicutes Rare + + + + + neg neg neg neg + neg
Enterococcus avium Firmicutes Minor + + + + + d(+) neg neg d + +
Enterococcus burkinafasonensis Firmicutes Rare + + + neg + neg neg neg neg + neg
Enterococcus caccae Firmicutes Rare + + + neg + neg neg neg + + neg
Enterococcus canintestini Firmicutes Rare + + + d(+) + neg neg neg + + d(+)
Enterococcus canis Firmicutes Rare + + + + + neg neg neg d d neg
Enterococcus casseliflavus Firmicutes Moderate + + + + + + + + + + neg
Enterococcus cecorum Firmicutes Rare + + + + + neg + + vr + vr
Enterococcus columbae Firmicutes Rare + + + d + d + + + + d
Enterococcus devriesei Firmicutes Moderate + + + + + d neg d + + neg
Enterococcus diestrammenae Firmicutes Rare + + + + + neg neg neg neg + neg
Enterococcus dispar Firmicutes Rare + + + + + neg vr neg vr + neg
Enterococcus durans Firmicutes Moderate + + + + + d(+) d neg + + +
Enterococcus eurekensis Firmicutes Rare + + + + neg + + + +
Enterococcus faecalis Firmicutes Widespread + + + + + neg neg d(+) d(+) + neg
Enterococcus faecium Firmicutes Widespread + + + + + neg d(+) vr + + neg
Enterococcus gallinarum Firmicutes Rare + + + + + vr + d(+) + + neg
Enterococcus gilvus Firmicutes Rare + + + + + +
Enterococcus haemoperoxidus Firmicutes Rare + + + + + + neg neg + + d(neg)
Enterococcus hermanniensis Firmicutes Rare + + w neg + neg neg neg neg w neg
Enterococcus hirae Firmicutes Minor + + + + + neg vr neg vr + neg
Enterococcus italicus Firmicutes Rare + w d + + neg neg neg + + neg
Enterococcus lactis Firmicutes Rare + + + + + neg + neg neg + neg
Enterococcus malodoratus Firmicutes Rare + + + + + neg + + + + vr
Enterococcus massiliensis Firmicutes Rare + + +
Enterococcus mediterraneensis Firmicutes Rare + + + neg neg neg neg neg + + neg
Enterococcus moraviensis Firmicutes Rare + + + + + + neg d(neg) + + +
Enterococcus mundtii Firmicutes Rare + + + + + neg + d(+) + + neg
Enterococcus pallens Firmicutes Rare + + + + + +
Enterococcus phoeniculicola Firmicutes Rare + + + w + neg neg neg + + neg
Enterococcus pseudoavium Firmicutes Rare + + + + + + neg neg + +
Enterococcus raffinosus Firmicutes Rare + + + + + + +
Enterococcus saccharolyticus Firmicutes Rare + + + + + + + + + + +
Enterococcus saigonensis Firmicutes Unlikely + + + + + + + + + + neg
Enterococcus sulfureus Firmicutes Rare + + + + + + + + + +
Enterococcus thailandicus Firmicutes Rare + + + + + neg neg neg + + neg
Enterococcus timonensis Firmicutes Rare + + neg + + neg neg neg + + neg
Enterococcus villorum Firmicutes Rare + + + + + neg + neg neg +
Enteroscipio rubneri Actinobacteria Rare + neg neg neg neg neg neg neg
Enterovibrio nigricans Proteobacteria Unlikely neg neg + neg + w neg
Ereboglobus luteus Verrucomicrobia Unlikely neg
Erwinia billingiae Proteobacteria Unlikely neg neg + neg d(+) neg neg neg d(neg) + neg
Erwinia tasmaniensis Proteobacteria Unlikely neg
Erwinia teleogrylli Proteobacteria Rare neg + + neg + neg + neg neg + neg
Erysipelatoclostridium ramosum Firmicutes Widespread + + neg + + neg + + + + neg
Erysipelatoclostridium saccharogumia Firmicutes Minor
Erysipelatoclostridium spiroforme Firmicutes Minor
Erysipelothrix larvae Firmicutes Rare +
Escherichia albertii Proteobacteria Minor neg neg neg vr neg neg neg vr
Escherichia coli Proteobacteria Widespread neg neg v + + neg d(+) d d + neg
Escherichia dysenteriae Proteobacteria Rare
Escherichia fergusonii Proteobacteria Minor neg + w + neg neg neg +
Escherichia marmotae Proteobacteria Unlikely neg neg neg neg + neg neg neg neg + neg
Escherichia ruysiae Proteobacteria Rare neg neg
Ethanoligenens harbinense Firmicutes Rare + + + + neg + + + + +
Eubacterium barkeri Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium biforme Firmicutes Moderate + neg d(+) neg neg neg neg d(+) d(+)
Eubacterium brachy Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium callanderi Firmicutes Minor + neg
Eubacterium cellulosolvens Firmicutes Minor + + d(+) + d neg w(+) w(+) neg
Eubacterium coprostanoligenes Firmicutes Minor + w + w
Eubacterium dolichum Firmicutes Moderate + neg neg neg neg neg neg neg neg
Eubacterium infirmum Firmicutes Rare + neg neg neg neg
Eubacterium limosum Firmicutes Moderate + neg neg neg neg neg neg neg neg
Eubacterium maltosivorans Firmicutes Rare + + + +
Eubacterium multiforme Firmicutes Rare + neg w(+) neg neg neg neg neg neg
Eubacterium nodatum Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium oxidoreducens Firmicutes Rare +
Eubacterium plexicaudatum Firmicutes Rare + + + + neg + + + +
Eubacterium pyruvativorans Firmicutes Rare + neg neg neg neg neg neg
Eubacterium ramulus Firmicutes Moderate + + + w neg w w neg neg
Eubacterium rectale Firmicutes Widespread + w(+) d(+) + + + + + d(+)
Eubacterium ruminantium Firmicutes Rare + + neg + neg neg neg neg neg
Eubacterium saphenum Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium siraeum Firmicutes Widespread + w(+) w(+) w(+) neg neg neg neg neg
Eubacterium sulci Firmicutes Rare + neg neg neg neg neg neg neg neg
Eubacterium tenue Firmicutes Minor + neg neg w(+) neg neg neg neg neg
Eubacterium uniforme Firmicutes Rare + + + + d(neg) neg neg neg
Eubacterium ventriosum Firmicutes Widespread + neg d(+) + neg neg neg d(+) neg
Eubacterium xylanophilum Firmicutes Rare + + neg neg neg neg neg neg
Eubacterium yurii Firmicutes Rare + neg neg neg neg neg neg neg
Ewingella americana Proteobacteria Rare neg + + + neg neg neg +
Exiguobacterium aurantiacum Firmicutes Rare + neg + neg + neg neg neg + + neg
Exiguobacterium marinum Firmicutes Rare vr + neg + neg + w + neg
Exiguobacterium mexicanum Firmicutes Rare + + + neg + neg neg neg + + neg
Exiguobacterium undae Firmicutes Rare + d + neg + neg + d + + neg
Ezakiella coagulans Bacteroidetes Minor neg neg neg neg neg neg neg neg neg
Ezakiella massiliensis Bacteroidetes Rare +
Ezakiella peruensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Facklamia hominis Firmicutes Rare + neg neg neg neg neg neg
Facklamia languida Firmicutes Rare + neg neg neg neg neg neg +
Faecalibacillus faecis Firmicutes Rare + + + w w w + neg
Faecalibacillus intestinalis Firmicutes Rare + + + w neg neg + neg
Faecalibacterium prausnitzii Firmicutes Widespread neg d d d(neg) neg neg d(w) neg
Faecalibaculum rodentium Firmicutes Rare + +
Faecalicatena contorta Firmicutes Minor + + + + neg + + +
Faecalicatena faecis Firmicutes Moderate
Faecalicatena fissicatena Firmicutes Minor + neg neg + neg +
Faecalicatena glycyrrhizinilyticum Firmicutes Minor
Faecalicatena gnavus Firmicutes Moderate
Faecalicatena lactaris Firmicutes Moderate
Faecalicatena orotica Firmicutes Minor + + + + vr vr + + +
Faecalicatena torques Firmicutes Moderate
Faecalicoccus pleomorphus Firmicutes Minor + neg neg neg neg
Faecalimonas umbilicata Firmicutes Rare + neg + + neg + + neg
Faecalitalea cylindroides Firmicutes Widespread + neg neg neg neg neg neg d(+) neg
Fannyhessea vaginae Actinobacteria Minor + neg
Fastidiosipila sanguinis Firmicutes Rare +
Fenollaria massiliensis Firmicutes Minor neg
Fenollaria timonensis Firmicutes Rare neg
Fermentimonas caenicola Bacteroidetes Rare neg neg
Ferrimonas balearica Proteobacteria Rare neg
Fibrobacter succinogenes Fibrobacteres Unlikely neg + neg + neg neg neg neg +
Fictibacillus arsenicus Firmicutes Unlikely + neg neg neg neg neg neg
Filifactor alocis Firmicutes Minor neg neg neg neg neg neg neg neg neg
Filifactor villosus Firmicutes Unlikely + neg neg neg neg
Finegoldia magna Firmicutes Widespread + neg neg neg neg neg neg neg neg
Flaviflexus massiliensis Actinobacteria Rare +
Flavobacterium banpakuense Bacteroidetes Unlikely neg
Flavobacterium caeni Bacteroidetes Non neg w w
Flavobacterium cheniae Bacteroidetes Rare neg
Flavobacterium daejeonense Bacteroidetes Unlikely neg + + + + +
Flavobacterium lindanitolerans Bacteroidetes Rare neg neg neg
Flavobacterium oncorhynchi Bacteroidetes Unlikely neg
Flavobacterium sakaeratica Bacteroidetes Rare neg
Flavonifractor plautii Firmicutes Widespread vr neg neg neg neg neg neg neg
Flexispira rappini Proteobacteria Rare neg
Flintibacter butyricus Firmicutes Rare neg neg neg neg neg neg neg
Fournierella massiliensis Firmicutes Moderate neg neg neg + + + + + + neg +
Francisella tularensis Proteobacteria Non neg neg + neg
Franconibacter pulveris Proteobacteria Rare neg + + + +
Fredinandcohnia humi Firmicutes Non + neg neg w neg neg neg neg neg neg neg
Fretibacterium fastidiosum Synergistetes Rare neg neg neg neg
Fructilactobacillus florum Firmicutes Unlikely + neg neg neg neg neg neg neg
Fructilactobacillus fructivorans Firmicutes Unlikely + neg neg d neg neg neg d neg
Fructilactobacillus sanfranciscensis Firmicutes Rare + neg neg + neg neg neg neg neg
Fucophilus fucoidanolyticus Verrucomicrobia Rare neg
Fundidesulfovibrio putealis Proteobacteria Rare neg
Furfurilactobacillus rossiae Firmicutes Unlikely + neg neg neg + neg neg neg neg neg neg
Fusicatenibacter saccharivorans Firmicutes Moderate + + + + w + + +
Fusobacterium canifelinum Fusobacteria Rare neg neg neg neg neg neg
Fusobacterium gonidiaformans Fusobacteria Minor neg neg
Fusobacterium massiliense Fusobacteria Rare neg + neg neg +
Fusobacterium mortiferum Fusobacteria Moderate neg + + + + + w
Fusobacterium naviforme Fusobacteria Rare neg
Fusobacterium necrogenes Fusobacteria Rare neg
Fusobacterium necrophorum Fusobacteria Minor neg neg
Fusobacterium necrophorum subsp. funduliforme Fusobacteria Rare neg neg neg w neg neg neg neg
Fusobacterium nucleatum Fusobacteria Minor neg neg neg neg neg neg neg neg
Fusobacterium nucleatum subsp. animalis Fusobacteria Rare neg neg neg neg neg neg
Fusobacterium nucleatum subsp. nucleatum Fusobacteria Minor neg neg neg neg neg neg
Fusobacterium nucleatum subsp. polymorphum Fusobacteria Rare neg neg neg neg neg neg
Fusobacterium nucleatum subsp. vincentii Fusobacteria Rare neg neg neg neg neg neg
Fusobacterium perfoetens Fusobacteria Rare neg neg neg neg neg neg + w
Fusobacterium periodonticum Fusobacteria Minor neg neg neg neg neg neg neg neg neg
Fusobacterium pseudoperiodonticum Fusobacteria Unlikely neg
Fusobacterium russii Fusobacteria Minor neg neg
Fusobacterium ulcerans Fusobacteria Rare neg neg neg neg neg
Fusobacterium varium Fusobacteria Moderate neg neg neg neg neg neg neg neg
Gabonia massiliensis Bacteroidetes Rare neg + + + neg + + +
Gabonibacter massiliensis Bacteroidetes Minor neg neg neg neg +
Gabonibacter timonensis Bacteroidetes Rare +
Gallibacterium anatis Proteobacteria Rare neg neg neg d neg neg neg + + + neg
Gardnerella leopoldii Actinobacteria Unlikely neg
Gardnerella vaginalis Actinobacteria Minor neg neg vr + neg vr neg
Gemella asaccharolytica Firmicutes Rare vr neg neg neg neg
Gemella haemolysans Firmicutes Minor + neg + neg neg vr neg
Gemella morbillorum Firmicutes Minor + neg vr neg w neg neg w neg neg
Gemella sanguinis Firmicutes Minor + neg neg neg d(+) neg neg + neg neg
Gemmatimonas groenlandica Gemmatimonadetes Non neg
Gemmiger formicilis Firmicutes Moderate neg d(+) neg + neg d(neg) neg neg neg
Gemmiger variabile Firmicutes Moderate
Geobacillus stearothermophilus Firmicutes Unlikely + neg neg neg + + + + + + +
Geobacillus vulcani Firmicutes Unlikely + + + + d(+) d(+) d(+) + +
Geodermatophilus obscurus Actinobacteria Non +
Georgenia muralis Actinobacteria Rare + neg neg +
Georgenia satyanarayanai Actinobacteria Unlikely +
Geosporobacter ferrireducens Firmicutes Unlikely neg
Gleimia europaea Actinobacteria Rare + neg neg + d neg d d
Globicatella sulfidifaciens Firmicutes Rare vr + neg + neg + + + + neg
Glutamicibacter arilaitensis Actinobacteria Unlikely + neg neg neg
Glutamicibacter protophormiae Actinobacteria Rare + neg neg
Gorbachella massiliensis Firmicutes Rare neg
Gordonia alkanivorans Actinobacteria Rare + +
Gordonia rubripertincta Actinobacteria Unlikely + neg neg
Gordonia terrae Actinobacteria Rare + neg +
Gordonibacter massiliensis Actinobacteria Rare + neg + + + + neg neg + + +
Gordonibacter pamelaeae Actinobacteria Moderate + neg neg neg neg neg neg neg
Gordonibacter urolithinfaciens Actinobacteria Minor + neg neg neg neg neg neg neg
Gorillibacterium timonense Firmicutes Rare neg
Gottschalkia acidurici Firmicutes Unlikely +
Gracilibacillus dipsosauri Firmicutes Rare + w
Gracilibacillus massiliensis Firmicutes Rare + neg neg neg
Gracilibacillus phocaeensis Firmicutes Rare +
Gracilibacillus thailandensis Firmicutes Non + + neg + + + + +
Gracilibacillus timonensis Firmicutes Rare +
Granulicatella adiacens Firmicutes Minor + neg d(+) neg neg neg + neg
Granulicatella elegans Firmicutes Minor + neg + neg neg vr vr neg
Granulicatella para-adiacens Firmicutes Rare + neg + neg
Grimontia hollisae Proteobacteria Rare neg neg neg neg neg neg neg neg
Gulosibacter bifidus Actinobacteria Unlikely +
Haemophilus ducreyi Proteobacteria Rare neg neg neg neg neg neg neg neg
Haemophilus haemolyticus Proteobacteria Minor neg neg neg + neg neg neg neg neg
Haemophilus influenzae Proteobacteria Minor neg neg neg + neg neg neg neg neg
Haemophilus parahaemolyticus Proteobacteria Minor neg neg neg + neg neg neg + neg
Haemophilus parainfluenzae Proteobacteria Widespread neg neg neg + neg neg d + neg
Haemophilus paraphrohaemolyticus Proteobacteria Rare neg neg d + neg neg neg + neg
Haemophilus pittmaniae Proteobacteria Minor neg neg + neg +
Haemophilus quentini Proteobacteria Rare neg neg + neg
Haemophilus sputorum Proteobacteria Minor neg neg + +
Hafnia alvei Proteobacteria Minor neg d + neg neg d +
Hafnia paralvei Proteobacteria Rare neg neg + neg neg +
Hahella ganghwensis Proteobacteria Rare neg
Halanaerobaculum tunisiense Firmicutes Unlikely neg + + +
Halobacillus dabanensis Firmicutes Unlikely + + + +
Halobacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg neg +
Halobacillus karajensis Firmicutes Non + + + neg
Halobacillus massiliensis Firmicutes Unlikely +
Halobacillus salinus Firmicutes Rare + + neg + w w neg + +
Halobacillus trueperi Firmicutes Unlikely + + + +
Halobacteroides halobius Firmicutes Unlikely neg + + +
Haloferax alexandrinus Euryarchaeota Unlikely neg neg + +
Haloferax massiliensis Euryarchaeota Rare neg
Haloimpatiens massiliensis Firmicutes Rare + + + + + + + + + + +
Halomonas massiliensis Proteobacteria Rare neg
Halomonas muralis Proteobacteria Non neg
Halomonas salina Proteobacteria Non neg neg neg neg neg neg d(neg) neg
Halomonas utahensis Proteobacteria Unlikely neg
Halopseudomonas bauzanensis Proteobacteria Unlikely neg neg neg
Halopseudomonas pelagia Proteobacteria Unlikely neg
Haploplasma axanthum Tenericutes Unlikely neg + neg + neg
Harryflintia acetispora Firmicutes Rare neg neg + neg neg +
Hathewaya histolytica Firmicutes Rare +
Hathewaya limosa Firmicutes Rare + neg neg neg neg neg neg neg neg
Hathewaya massiliensis Firmicutes Rare + + + + + + + + + + +
Helcobacillus massiliensis Actinobacteria Rare + neg neg neg + w neg neg + w +
Helcococcus sueciensis Firmicutes Rare + neg + + neg neg neg neg +
Helicobacter bilis Proteobacteria Unlikely neg
Helicobacter canadensis Proteobacteria Unlikely neg
Helicobacter canis Proteobacteria Unlikely neg
Helicobacter cinaedi Proteobacteria Rare neg neg
Helicobacter felis Proteobacteria Non neg neg neg neg neg
Helicobacter fennelliae Proteobacteria Rare neg
Helicobacter heilmannii Proteobacteria Non neg
Helicobacter macacae Proteobacteria Unlikely neg
Helicobacter pametensis Proteobacteria Rare neg
Helicobacter pullorum Proteobacteria Minor neg
Helicobacter pylori Proteobacteria Non neg
Helicobacter rodentium Proteobacteria Rare neg
Helicobacter winghamensis Proteobacteria Rare neg
Heliomicrobium modesticaldum Firmicutes Unlikely neg
Herbaspirillum autotrophicum Proteobacteria Unlikely neg
Herbaspirillum huttiense Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg neg
Herbinix hemicellulosilytica Firmicutes Unlikely +
Herbinix luporum Firmicutes Unlikely + neg
Herminiimonas contaminans Proteobacteria Unlikely neg
Hespellia porcina Firmicutes Rare +
Hespellia stercorisuis Firmicutes Rare +
Heyndrickxia oleronia Firmicutes Unlikely neg + neg neg d neg neg neg neg d neg
Heyndrickxia sporothermodurans Firmicutes Unlikely + d d neg w d neg neg w w d
Histophilus somni Proteobacteria Rare neg neg neg neg neg
Holdemanella biformis Firmicutes Moderate + neg neg neg neg + neg neg
Holdemania filiformis Firmicutes Moderate + neg vr vr neg neg neg + neg
Holdemania massiliensis Firmicutes Minor + + + + + + neg +
Holophaga foetida Acidobacteria Non neg
Howardella ureilytica Firmicutes Rare +
Hugonella massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Humisphaera borealis Planctomycetes Unlikely neg
Hungatella effluvii Firmicutes Minor + + +
Hungatella hathewayi Firmicutes Widespread + + + + + + + + +
Hungatella saccharolyticum Firmicutes Rare
Hungatella xylanolytica Firmicutes Rare neg + + + neg +
Hydrogenibacillus schlegelii Firmicutes Unlikely vr
Hydrogenoanaerobacterium saccharovorans Firmicutes Rare neg neg + + + + +
Hydrogenophaga pseudoflava Proteobacteria Unlikely neg + + + +
Hydrogenovibrio crunogenus Proteobacteria Unlikely neg
Hymenobacter rigui Bacteroidetes Rare neg
Hymenobacter russus Bacteroidetes Unlikely neg
Hyphomicrobium facile Proteobacteria Rare neg
Ihubacter massiliensis Firmicutes Rare neg
Ihuprevotella massiliensis Bacteroidetes Rare neg
Ileibacterium valens Firmicutes Rare +
Inediibacterium massiliense Firmicutes Rare + + + + neg + + +
Intestinibacillus massiliensis Firmicutes Rare neg
Intestinibacter bartlettii Firmicutes Widespread + neg + neg neg +
Intestinibaculum porci Firmicutes Unlikely + + + + + neg + neg + neg neg
Intestinimonas butyriciproducens Firmicutes Moderate +
Intestinimonas gabonensis Firmicutes Rare neg
Intestinimonas massiliensis Firmicutes Moderate neg neg + neg neg + + + neg + neg
Intestinimonas timonensis Firmicutes Rare neg
Isoptericola variabilis Actinobacteria Rare + + neg + + neg
Janibacter anophelis Actinobacteria Rare + neg neg neg neg neg neg neg
Janibacter hoylei Actinobacteria Non + neg neg neg neg neg
Janibacter limosus Actinobacteria Unlikely + neg neg neg neg neg neg
Janibacter terrae Actinobacteria Rare + neg neg neg neg + neg
Jeotgalibaca arthritidis Firmicutes Unlikely + neg neg neg + neg neg neg + neg neg
Jeotgalibaca porci Firmicutes Unlikely + + neg neg + neg neg neg + + neg
Jeotgalicoccus halotolerans Firmicutes Rare + neg neg neg neg neg neg neg
Johnsonella ignava Firmicutes Rare neg neg neg neg neg neg neg neg neg
Jonquetella anthropi Synergistetes Rare neg
Kalamiella piersonii Proteobacteria Unlikely neg
Kallipyga gabonensis Firmicutes Rare + neg neg + + +
Kallipyga massiliensis Firmicutes Rare + neg
Kandleria vitulina Firmicutes Rare + + + + neg + + + neg
Kerstersia gyiorum Proteobacteria Rare neg neg
Khelaifiella massiliensis Firmicutes Rare +
Kineothrix alysoides Firmicutes Rare neg
Kingella denitrificans Proteobacteria Unlikely neg neg neg + neg neg neg
Kingella kingae Proteobacteria Rare neg neg + neg
Kingella oralis Proteobacteria Unlikely neg neg neg neg
Kiritimatiella glycovorans Kiritimatiellaeota Unlikely neg
Klebsiella aerogenes Proteobacteria Moderate neg + + + + + + +
Klebsiella grimontii Proteobacteria Minor neg neg
Klebsiella michiganensis Proteobacteria Minor neg + +
Klebsiella oxytoca Proteobacteria Moderate neg + + + +
Klebsiella pneumoniae Proteobacteria Widespread neg + + + neg + + + +
Klebsiella pneumoniae subsp. ozaenae Proteobacteria Rare neg
Klebsiella pneumoniae subsp. rhinoscleromatis Proteobacteria Rare neg
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria Minor neg + + + + + + + + d(neg)
Klebsiella quasivariicola Proteobacteria Minor
Klebsiella variicola Proteobacteria Minor neg +
Kluyvera ascorbata Proteobacteria Minor neg + + + + + + +
Kluyvera cryocrescens Proteobacteria Rare neg + + + + + + +
Kluyvera georgiana Proteobacteria Rare neg + + + + + + + +
Kluyvera intermedia Proteobacteria Rare neg + + + + + + +
Kocuria carniphila Actinobacteria Unlikely + neg + w neg neg w neg neg
Kocuria marina Actinobacteria Rare + neg neg neg neg neg neg neg
Kocuria palustris Actinobacteria Unlikely + neg neg + neg neg neg + neg neg
Kocuria polaris Actinobacteria Unlikely + + + + +
Kocuria rhizophila Actinobacteria Unlikely + neg neg neg neg + neg neg
Kocuria rosea Actinobacteria Unlikely + neg neg neg neg neg neg neg
Kocuria salsicia Actinobacteria Unlikely +
Kocuria varians Actinobacteria Rare + neg neg neg d
Kosakonia cowanii Proteobacteria Minor neg + + + + neg + + + + neg
Krasilnikoviella flava Actinobacteria Rare +
Kurthia gibsonii Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Kurthia massiliensis Firmicutes Rare +
Kurthia senegalensis Firmicutes Rare +
Kurthia sp. Dielmo Firmicutes Rare +
Kurthia zopfii Firmicutes Rare + neg neg
Kushneria sinocarnis Firmicutes Unlikely neg + + neg neg neg +
Kytococcus schroeteri Actinobacteria Rare + neg neg neg neg neg neg neg neg
Kytococcus sedentarius Actinobacteria Rare + neg neg neg neg neg neg neg
Labilithrix luteola Proteobacteria Non neg
Lachnoanaerobaculum orale Firmicutes Rare +
Lachnoanaerobaculum saburreum Firmicutes Rare + + + neg + +
Lachnoanaerobaculum umeaense Firmicutes Rare + + + + + + +
Lachnobacterium bovis Firmicutes Rare + + + + +
Lachnoclostridium bouchesdurhonense Firmicutes Rare neg
Lachnoclostridium edouardi Firmicutes Minor +
Lachnoclostridium massiliosenegalense Firmicutes Rare +
Lachnoclostridium pacaense Firmicutes Rare vr neg neg neg
Lachnoclostridium phocaeense Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Lachnoclostridium phytofermentans Firmicutes Minor neg
Lachnoclostridium touaregense Firmicutes Rare +
Lachnospira eligens Firmicutes Widespread + + d(+) neg neg neg neg neg neg
Lachnospira multipara Firmicutes Rare + + neg neg + neg
Lachnospira pectinoschiza Firmicutes Minor + + +
Lachnospira rogosae Firmicutes Moderate
Lacrimispora aerotolerans Firmicutes Rare neg + + + + + d
Lacrimispora amygdalina Firmicutes Rare +
Lacrimispora celerecrescens Firmicutes Rare + + w(+) + w(+) w(+) + w(+) +
Lacrimispora indolis Firmicutes Minor neg neg neg neg neg neg neg neg
Lacrimispora saccharolytica Firmicutes Moderate neg
Lacrimispora sphenoides Firmicutes Minor + d(+) + neg +
Lacticaseibacillus casei Firmicutes Rare + + vr + + + neg neg + + neg
Lacticaseibacillus paracasei Firmicutes Minor + + + d(+) + + neg w + vr
Lacticaseibacillus paracasei subsp. tolerans Firmicutes Unlikely + neg neg + neg neg neg neg neg neg neg
Lacticaseibacillus paragasseri Firmicutes Unlikely + + + + + neg neg neg + + vr
Lacticaseibacillus rhamnosus Firmicutes Moderate + + + + + + neg neg w + +
Lacticaseibacillus saniviri Firmicutes Unlikely + + + neg + + + + + + neg
Lacticaseibacillus sharpeae Firmicutes Unlikely + + + + neg neg d(neg) neg
Lacticaseibacillus zeae Firmicutes Unlikely + + + d neg + neg neg + + neg
Lacticigenium naphtae Firmicutes Non vr + + + + +
Lactiplantibacillus paraplantarum Firmicutes Rare + + + + + + + + + + d
Lactiplantibacillus pentosus Firmicutes Rare + + + + + d(neg) + + + + d
Lactiplantibacillus plantarum Firmicutes Moderate + + + + + d(+) d(+) d(+) + d(+) d(neg)
Lactiplantibacillus xiangfangensis Firmicutes Rare + + + neg + neg neg neg + + neg
Lactobacillus acidophilus Firmicutes Widespread + + vr + + neg d(+) d + d neg
Lactobacillus amylolyticus Firmicutes Unlikely + neg neg + neg d d + neg
Lactobacillus amylovorus Firmicutes Minor + d + d(+) + neg d d + neg neg
Lactobacillus crispatus Firmicutes Moderate + + vr + + neg neg neg + neg neg
Lactobacillus delbrueckii subsp. bulgaricus Firmicutes Rare + d + neg neg neg neg neg neg
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes Minor + neg neg neg neg neg + d neg
Lactobacillus delbrueckii subsp. lactis Firmicutes Unlikely + d d(+) + neg neg neg + +
Lactobacillus equicursoris Firmicutes Rare + + + w w neg
Lactobacillus gasseri Firmicutes Moderate + + vr d d(+) neg d(+) d + d vr
Lactobacillus gigeriorum Firmicutes Unlikely + + + neg + neg neg neg + neg neg
Lactobacillus hamsteri Firmicutes Rare + + + + neg + + + d
Lactobacillus helveticus Firmicutes Rare + neg neg + + neg neg neg neg d neg
Lactobacillus hominis Firmicutes Unlikely + + + + + neg neg + + + neg
Lactobacillus iners Firmicutes Rare + neg neg neg d neg neg neg neg neg neg
Lactobacillus intestinalis Firmicutes Unlikely + d d + neg d d + neg
Lactobacillus jensenii Firmicutes Unlikely + + vr neg + neg neg neg + + neg
Lactobacillus johnsonii Firmicutes Minor + + vr d(+) + neg d d + d neg
Lactobacillus kalixensis Firmicutes Minor + + + + + neg + + + + neg
Lactobacillus kefiranofaciens Firmicutes Rare + d + d neg d d d d d
Lactobacillus leichmannii Firmicutes Rare + + d + neg neg neg + d
Lactobacillus pasteurii Firmicutes Unlikely + + + + + neg neg neg + neg w
Lactobacillus psittaci Firmicutes Unlikely + neg neg neg + + neg
Lactobacillus rogosae Firmicutes Rare + vr vr neg neg
Lactobacillus timonensis Firmicutes Unlikely +
Lactobacillus ultunensis Firmicutes Minor + + + + + neg d(+) d + + neg
Lactococcus cremoris Firmicutes Rare + d d(neg) + neg neg neg neg neg d(neg) neg
Lactococcus garvieae Firmicutes Minor + + + neg vr neg neg neg d + neg
Lactococcus lactis subsp. lactis Firmicutes Widespread + d(+) d(+) + + neg neg neg d(neg) + neg
Lactococcus petauri Firmicutes Rare + + + neg + neg neg neg + + neg
Lactococcus plantarum Firmicutes Rare + + d neg + + neg neg + + d
Lactococcus raffinolactis Firmicutes Minor + + d + + d + + + + d
Lactonifactor longoviformis Firmicutes Minor neg
Lacunisphaera limnophila Verrucomicrobia Unlikely neg
Lagierella massiliensis Firmicutes Rare + + + + + +
Lancefieldella parvula Actinobacteria Minor + + + neg neg neg + +
Lancefieldella rimae Actinobacteria Minor + d(+) neg + neg neg neg + +
Lapidilactobacillus dextrinicus Firmicutes Non + + neg d neg neg neg w w
Laribacter hongkongensis Proteobacteria Rare neg
Lascolabacillus massiliensis Bacteroidetes Rare neg
Latilactobacillus curvatus Firmicutes Minor + d(+) vr d(neg) + neg neg neg d(+) d(+) neg
Latilactobacillus sakei Firmicutes Minor + d(+) vr d(neg) d(neg) neg d neg + d(+) neg
Latilactobacillus sakei subsp. carnosus Firmicutes Rare + d w neg d neg + neg + +
Lautropia mirabilis Proteobacteria Minor neg neg + neg neg + neg
Lawsonella clevelandensis Actinobacteria Rare vr
Lawsonia intracellularis Proteobacteria Unlikely neg
Lawsonibacter asaccharolyticus Firmicutes Moderate + neg neg neg neg neg neg neg
Leclercia adecarboxylata Proteobacteria Rare neg + + + + neg + d d + neg
Lederbergia galactosidilyticus Firmicutes Rare + d d d d d d d d d d
Lederbergia lentus Firmicutes Unlikely + w w + w w w w + + d
Legionella bozemanae Proteobacteria Non neg
Legionella pneumophila Proteobacteria Non neg
Lelliottia amnigena Proteobacteria Rare neg + neg + neg + + d +
Lelliottia nimipressuralis Proteobacteria Rare neg + + + + d neg +
Leminorella grimontii Proteobacteria Rare neg neg neg neg neg neg neg neg
Leminorella richardii Proteobacteria Rare neg neg neg neg neg neg neg neg
Lentibacillus massiliensis Firmicutes Rare +
Lentibacillus timonensis Firmicutes Rare + neg neg + neg neg neg neg neg neg neg
Lentilactobacillus buchneri subsp. buchneri Firmicutes Minor + neg neg + + + + neg d(+) neg vr
Lentilactobacillus diolivorans Firmicutes Unlikely + neg neg neg + neg + w neg neg neg
Lentilactobacillus farraginis Firmicutes Unlikely + neg neg + + + + + neg
Lentilactobacillus hilgardii Firmicutes Rare + neg neg neg + d neg neg d neg neg
Lentilactobacillus kefiri Firmicutes Non + neg neg + + neg + neg neg neg neg
Lentilactobacillus kisonensis Firmicutes Unlikely + neg neg neg + neg neg neg + neg d
Lentilactobacillus otakiensis Firmicutes Unlikely + neg d + neg + d + neg neg
Lentilactobacillus parabuchneri Firmicutes Rare + neg neg neg + + + + + neg neg
Lentilactobacillus parafarraginis Firmicutes Unlikely + neg neg + + + + + neg
Lentilactobacillus senioris Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Leptospira interrogans Spirochaetes Non neg
Leptotrichia amnionii Fusobacteria Rare neg neg
Leptotrichia buccalis Fusobacteria Rare neg + vr + neg + vr + +
Leptotrichia hofstadii Fusobacteria Rare neg neg
Leptotrichia hongkongensis Fusobacteria Rare vr neg neg
Leptotrichia massiliensis Fusobacteria Rare +
Leptotrichia shahii Fusobacteria Rare neg neg
Leptotrichia wadei Fusobacteria Rare neg neg
Leucobacter aridicollis Actinobacteria Unlikely +
Leuconostoc carnosum Firmicutes Unlikely + neg neg neg neg neg neg + +
Leuconostoc citreum Firmicutes Minor + d(+) d(+) neg + neg neg neg + + +
Leuconostoc gelidum Firmicutes Rare + + neg neg d neg + + + + +
Leuconostoc gelidum subsp. gasicomitatum Firmicutes Non + + + neg + neg + + + + +
Leuconostoc holzapfelii Firmicutes Rare + neg neg neg + neg + + neg + +
Leuconostoc inhae Firmicutes Unlikely + + neg + neg neg neg + + d
Leuconostoc kimchii Firmicutes Rare + + + + neg neg neg + +
Leuconostoc lactis Firmicutes Minor + neg d + + neg + d(+) + neg d
Leuconostoc mesenteroides subsp. cremoris Firmicutes Rare + d d(neg) + neg + d + +
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes Minor + d(neg) vr d(neg) + neg vr vr + + +
Leuconostoc pseudomesenteroides Firmicutes Unlikely + d(+) d d(+) + neg + + d(+) + d(+)
Levilactobacillus brevis Firmicutes Minor + neg neg neg + neg + d d(neg) neg neg
Levilactobacillus brevis subsp. gravesensis Firmicutes Unlikely + neg + neg + d d neg
Levilactobacillus namurensis Firmicutes Unlikely + neg neg neg + neg + neg neg neg neg
Levilactobacillus parabrevis Firmicutes Unlikely + neg neg d + neg neg neg neg neg neg
Levyella massiliensis Firmicutes Rare + neg neg neg neg neg neg neg
Ligilactobacillus acidipiscis Firmicutes Unlikely + neg d + neg neg neg d d
Ligilactobacillus agilis Firmicutes Rare + + + + + + + + + neg
Ligilactobacillus animalis Firmicutes Minor + + + + + neg + + + neg neg
Ligilactobacillus ceti Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Ligilactobacillus equi Firmicutes Unlikely + neg neg + + neg + + + neg d
Ligilactobacillus murinus Firmicutes Rare + + neg + + +
Ligilactobacillus pobuzihii Firmicutes Unlikely + + + + neg neg neg + neg
Ligilactobacillus ruminis Firmicutes Widespread + + vr + + neg + + + neg neg
Ligilactobacillus salivarius Firmicutes Widespread + neg neg vr + neg vr + + neg
Limnobacter thiooxidans Proteobacteria Unlikely neg
Limnochorda pilosa Firmicutes Unlikely neg
Limosilactobacillus antri Firmicutes Rare + neg neg neg + neg + + + neg w
Limosilactobacillus caccae Firmicutes Rare + neg + + + neg + + + + +
Limosilactobacillus coleohominis Firmicutes Unlikely + neg neg neg neg neg neg neg vr neg neg
Limosilactobacillus fermentum Firmicutes Widespread + vr neg + + neg + + + d(+) neg
Limosilactobacillus frumenti Firmicutes Non + + + + d + + + +
Limosilactobacillus gastricus Firmicutes Unlikely + + + + + neg + + + + +
Limosilactobacillus ingluviei Firmicutes Non + neg neg neg d neg d d + neg neg
Limosilactobacillus mucosae Firmicutes Rare + neg neg d(neg) + neg + + + neg neg
Limosilactobacillus oris Firmicutes Minor + d + + + neg + + + d neg
Limosilactobacillus reuteri Firmicutes Minor + neg neg + + neg + + + neg neg
Limosilactobacillus vaginalis Firmicutes Rare + neg neg + + neg + + + neg neg
Limosilactobacillus walteri Firmicutes Rare + + + + + w
Liquorilactobacillus mali Firmicutes Unlikely + + + d d d d d + neg
Liquorilactobacillus satsumensis Firmicutes Non + neg neg d neg neg + +
Liquorilactobacillus vini Firmicutes Unlikely + + + neg + neg neg neg + + neg
Listeria floridensis Firmicutes Rare + + + + neg neg neg neg neg
Listeria grayi Firmicutes Rare + + d + + + d(+) + neg + +
Listeria innocua Firmicutes Rare + d d + d d neg neg d + +
Listeria ivanovii Firmicutes Rare + + + + d + neg neg + + neg
Listeria marthii Firmicutes Rare +
Listeria monocytogenes Firmicutes Rare + + + + + d neg neg vr + neg
Listeria seeligeri Firmicutes Rare + + + d neg neg + + +
Listeria welshimeri Firmicutes Rare + + + + + + neg neg + + +
Litchfieldia alkalitelluris Firmicutes Rare + neg neg neg neg
Loigolactobacillus bifermentans Firmicutes Unlikely + neg neg + neg neg neg neg neg
Loigolactobacillus coryniformis Firmicutes Minor + neg neg neg + neg d(neg) d(neg) + neg neg
Loigolactobacillus coryniformis subsp. torquens Firmicutes Unlikely + neg neg neg neg +
Longicatena caecimuris Firmicutes Rare +
Lutispora thermophila Firmicutes Unlikely neg
Luxibacter massiliensis Firmicutes Rare + + + + + neg + neg neg + neg
Lysinibacillus boronitolerans Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Lysinibacillus fusiformis Firmicutes Rare vr neg neg neg neg neg
Lysinibacillus macroides Firmicutes Unlikely vr
Lysinibacillus meyeri Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Lysinibacillus sphaericus Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Lysinibacillus varians Firmicutes Rare +
Lysinibacillus xylanilyticus Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Lysobacter soli Proteobacteria Rare neg neg neg w neg neg neg neg w
Macellibacteroides fermentans Bacteroidetes Rare + + + + + + + +
Macrococcus caseolyticus Firmicutes Unlikely + neg + neg neg d + neg
Mageeibacillus indolicus Firmicutes Rare vr neg neg neg neg
Mahella australiensis Firmicutes Unlikely + + +
Mailhella massiliensis Proteobacteria Rare neg
Mameliella alba Proteobacteria Unlikely neg + neg neg +
Mammaliicoccus fleurettii Firmicutes Rare + neg neg + neg neg + + +
Mammaliicoccus lentus Firmicutes Rare + + + + neg d(+) d(+) + + neg
Mammaliicoccus sciuri Firmicutes Rare + + vr + neg + +
Mammaliicoccus vitulinus Firmicutes Unlikely + vr neg neg neg neg + vr neg
Mannheimia granulomatis Proteobacteria Rare neg d + d neg + neg
Mannheimia haemolytica Proteobacteria Rare neg neg neg + neg neg
Mannheimia succiniciproducens Proteobacteria Rare neg
Marasmitruncus massiliensis Firmicutes Rare +
Marseilla massiliensis Bacteroidetes Rare neg
Marseillibacter massiliensis Firmicutes Rare neg
Marvinbryantia formatexigens Firmicutes Moderate +
Massilia aurea Proteobacteria Unlikely neg
Massilia brevitalea Proteobacteria Non neg
Massilia haematophila Proteobacteria Rare neg neg neg
Massilia norwichensis Proteobacteria Unlikely neg
Massilia timonae Proteobacteria Non neg neg neg neg neg
Massilia varians Proteobacteria Unlikely neg neg neg
Massilibacillus massiliensis Firmicutes Rare +
Massilibacterium senegalense Firmicutes Rare neg neg neg neg + neg neg + + neg neg
Massilicoli timonensis Firmicutes Rare neg neg + neg + neg neg neg + neg neg
Massiliimalia massiliensis Firmicutes Rare neg neg +
Massiliimalia timonensis Firmicutes Minor + neg neg
Massilimicrobiota timonensis Firmicutes Moderate neg + + + + + + + + + +
Massilioclostridium coli Firmicutes Moderate neg neg neg
Massiliprevotella massiliensis Bacteroidetes Rare neg
Massilistercora timonensis Firmicutes Rare neg neg d neg neg neg neg neg d d neg
Mediterranea massiliensis Bacteroidetes Rare neg neg neg
Mediterraneibacter faecis Firmicutes Minor + neg + + neg + neg neg
Mediterraneibacter glycyrrhizinilyticus Firmicutes Minor + neg + + neg neg neg neg
Mediterraneibacter massiliensis Firmicutes Rare + + + + + neg + neg + + neg
Megalodesulfovibrio gigas Proteobacteria Unlikely neg
Megamonas funiformis Firmicutes Minor neg neg + + neg neg + + +
Megamonas hypermegale Firmicutes Moderate neg d + + neg + + + +
Megamonas rupellensis Firmicutes Rare neg + + + neg + + +
Megasphaera cerevisiae Firmicutes Rare neg neg neg neg
Megasphaera elsdenii Firmicutes Moderate neg neg neg + neg neg neg neg
Megasphaera indica Firmicutes Rare neg
Megasphaera massiliensis Firmicutes Rare neg + + + + neg neg +
Megasphaera micronuciformis Firmicutes Minor neg neg neg neg neg neg neg neg neg
Megasphaera stantonii Firmicutes Rare neg
Meiothermus silvanus Deinococcus-Thermus Unlikely neg
Merdibacter massiliensis Firmicutes Rare neg
Merdimonas faecis Firmicutes Rare + neg neg
Mesobacillus jeotgali Firmicutes Rare vr d d neg + neg neg neg d + neg
Mesobacillus subterraneus Firmicutes Rare neg neg neg
Mesorhizobium australicum Proteobacteria Unlikely neg
Mesorhizobium jarvisii Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg neg
Mesorhizobium loti Proteobacteria Rare neg
Mesorhizobium muleiense Proteobacteria Unlikely neg
Mesosutterella multiformis Proteobacteria Rare neg neg
Metabacillus galliciensis Firmicutes Unlikely + neg neg neg neg neg neg neg
Metabacillus idriensis Firmicutes Rare + neg + neg + + + + +
Metabacillus litoralis Firmicutes Rare vr + + neg + + + + +
Metabacillus niabensis Firmicutes Rare +
Metakosakonia massiliensis Proteobacteria Rare neg
Metamycoplasma anseris Tenericutes Unlikely unk
Metaprevotella massiliensis Bacteroidetes Rare neg
Methanobrevibacter arboriphilus Euryarchaeota Rare +
Methanobrevibacter millerae Euryarchaeota Rare +
Methanobrevibacter oralis Euryarchaeota Rare +
Methanobrevibacter ruminantium Euryarchaeota Rare +
Methanobrevibacter smithii Euryarchaeota Moderate +
Methanococcus voltae Euryarchaeota Rare neg
Methanomassiliicoccus intestinalis Euryarchaeota Rare +
Methanomassiliicoccus luminyensis Candidatus Thermoplasmatota Rare +
Methanomethylophilus alvus Candidatus Thermoplasmatota Rare
Methanosphaera stadtmanae Euryarchaeota Minor +
Methylibium petroleiphilum Proteobacteria Unlikely neg
Methylobacterium adhaesivum Proteobacteria Unlikely neg +
Methylobacterium brachiatum Proteobacteria Unlikely neg
Methylobacterium jeotgali Proteobacteria Non neg neg neg neg neg neg neg neg neg neg neg
Methylobacterium mesophilicum Proteobacteria Non neg neg neg neg neg neg neg neg neg neg neg
Methylobacterium organophilum Proteobacteria Unlikely neg
Methylobacterium oryzae Proteobacteria Unlikely neg
Methylobacterium phyllosphaerae Proteobacteria Unlikely neg
Methylobacterium radiotolerans Proteobacteria Non neg neg neg neg neg neg neg neg neg neg neg
Methylomusa anaerophila Firmicutes Unlikely neg neg neg neg neg neg neg neg
Methylorubrum aminovorans Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg neg
Methylorubrum extorquens Proteobacteria Non neg neg neg neg neg neg neg neg neg neg neg
Methylorubrum populi Proteobacteria Unlikely neg
Methylorubrum thiocyanatum Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg neg
Methylorubrum zatmanii Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg neg
Methyloversatilis discipulorum Proteobacteria Rare neg
Methyloversatilis universalis Proteobacteria Rare neg
Microbacterium aurum Actinobacteria Rare + w neg w neg neg w w w
Microbacterium chocolatum Actinobacteria Unlikely + neg neg neg neg w neg
Microbacterium deminutum Actinobacteria Unlikely +
Microbacterium esteraromaticum Actinobacteria Unlikely +
Microbacterium foliorum Actinobacteria Unlikely + + d d + d d d + +
Microbacterium ginsengisoli Actinobacteria Non + + neg neg + neg neg neg + + +
Microbacterium gubbeenense Actinobacteria Unlikely + + neg neg + +
Microbacterium hydrocarbonoxydans Actinobacteria Unlikely + +
Microbacterium kitamiense Actinobacteria Unlikely + d neg + neg + + +
Microbacterium lacticum Actinobacteria Unlikely + + neg + + neg neg vr neg neg
Microbacterium liquefaciens Actinobacteria Unlikely +
Microbacterium luteolum Actinobacteria Non + neg neg
Microbacterium maritypicum Actinobacteria Unlikely + neg neg w neg
Microbacterium mitrae Actinobacteria Unlikely +
Microbacterium natoriense Actinobacteria Unlikely + + neg neg + + + + + + +
Microbacterium oleivorans Actinobacteria Unlikely + +
Microbacterium oxydans Actinobacteria Unlikely + d + +
Microbacterium paraoxydans Actinobacteria Rare + + +
Microbacterium phyllosphaerae Actinobacteria Unlikely + + + neg neg d d d + +
Microbacterium saccharophilum Actinobacteria Unlikely +
Microbacterium schleiferi Actinobacteria Unlikely + neg neg
Microbacterium sediminicola Actinobacteria Unlikely +
Microbacterium testaceum Actinobacteria Non + neg neg
Microbispora rosea Actinobacteria Rare +
Micrococcus cohnii Actinobacteria Unlikely + + neg + + +
Micrococcus endophyticus Actinobacteria Unlikely + + neg neg + neg neg + + +
Micrococcus luteus Actinobacteria Minor + neg neg neg + neg neg neg + + neg
Micrococcus lylae Actinobacteria Rare + neg + + + neg + neg + + neg
Micrococcus terreus Actinobacteria Rare + + + + +
Microlunatus phosphovorus Actinobacteria Unlikely +
Micromonospora aurantiaca Actinobacteria Rare + neg neg
Micropruina glycogenica Actinobacteria Rare +
Microvirga aerophila Proteobacteria Unlikely neg
Microvirga massiliensis Proteobacteria Rare neg neg neg neg neg neg neg neg neg + neg
Microvirgula aerodenitrificans Proteobacteria Unlikely neg
Millionella massiliensis Bacteroidetes Rare neg
Miniphocaeibacter massiliensis Firmicutes Rare +
Mitsuokella jalaludinii Firmicutes Minor neg + neg + + neg + + + + +
Mitsuokella multacida Firmicutes Moderate neg + neg + + + + + + +
Mixta calida Proteobacteria Rare neg + + + neg + +
Mixta intestinalis Proteobacteria Rare neg
Mobilibacterium massiliense Firmicutes Rare neg
Mobilibacterium timonense Firmicutes Rare neg
Mobilicoccus massiliensis Actinobacteria Rare +
Mobiluncus curtisii Actinobacteria Rare vr neg neg w neg + neg neg neg
Moellerella wisconsensis Proteobacteria Rare neg neg + neg + + + neg
Mogibacterium diversum Firmicutes Rare +
Mogibacterium neglectum Firmicutes Rare +
Mogibacterium pumilum Firmicutes Rare +
Mogibacterium timidum Firmicutes Rare + neg neg neg neg neg neg neg neg
Mogibacterium vescum Firmicutes Unlikely +
Monoglobus pectinilyticus Firmicutes Minor +
Moorella glycerini Firmicutes Unlikely +
Moraxella catarrhalis Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Moraxella osloensis Proteobacteria Unlikely neg neg neg
Mordavella massiliensis Firmicutes Rare neg
Morganella morganii Proteobacteria Minor neg neg neg neg neg neg neg
Moryella indoligenes Firmicutes Rare + neg neg vr neg neg neg neg neg
Mucispirillum schaedleri Deferribacteres Rare neg
Murdochiella asaccharolytica Firmicutes Rare + neg neg
Murdochiella massiliensis Firmicutes Rare +
Murdochiella vaginalis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Muribaculum gordoncarteri Bacteroidetes Unlikely neg + + + + +
Muribaculum intestinale Bacteroidetes Minor neg neg neg neg neg neg neg neg
Murimonas intestini Firmicutes Rare +
Mycobacterium abscessus Actinobacteria Unlikely vr neg neg neg neg
Mycobacterium avium Actinobacteria Unlikely vr neg neg
Mycobacterium avium subsp. paratuberculosis Actinobacteria Unlikely vr
Mycobacterium colombiense Actinobacteria Rare vr
Mycobacterium florentinum Actinobacteria Rare vr
Mycobacterium fortuitum Actinobacteria Rare vr neg neg neg neg
Mycobacterium gastri Actinobacteria Rare vr
Mycobacterium gordonae Actinobacteria Rare vr neg neg neg neg neg neg
Mycobacterium interjectum Actinobacteria Rare vr
Mycobacterium kansasii Actinobacteria Unlikely vr
Mycobacterium lentiflavum Actinobacteria Rare vr
Mycobacterium simiae Actinobacteria Rare vr
Mycobacterium terrae Actinobacteria Rare vr
Mycobacterium tuberculosis Actinobacteria Non vr
Mycobacterium tuberculosis variant africanum Actinobacteria Non vr
Mycobacterium tuberculosis variant bovis Actinobacteria Unlikely +
Mycobacteroides abscessus subsp. bolletii Actinobacteria Unlikely +
Mycolicibacterium aubagnense Actinobacteria Non + neg neg neg
Mycolicibacterium cosmeticum Actinobacteria Unlikely vr
Mycolicibacterium houstonense Actinobacteria Rare + neg neg neg neg neg neg +
Mycolicibacterium mageritense Actinobacteria Unlikely +
Mycolicibacterium neoaurum Actinobacteria Rare +
Mycoplasma hominis Tenericutes Rare neg neg neg neg neg neg
Mycoplasma muris Tenericutes Rare neg
Mycoplasma pneumoniae Tenericutes Rare neg
Mycoplasmopsis arginini Tenericutes Unlikely neg
Mycoplasmopsis californica Tenericutes Unlikely neg
Myroides odoratimimus Bacteroidetes Unlikely neg
Myroides odoratus Bacteroidetes Unlikely neg
Nakamurella multipartita Actinobacteria Unlikely +
Nanosynbacter lyticus Candidatus Saccharibacteria Unlikely +
Natronorubrum bangense Euryarchaeota Non neg
Nautilia nitratireducens Proteobacteria Unlikely neg
Ndongobacter massiliensis Firmicutes Unlikely neg
Necropsobacter rosorum Proteobacteria Rare neg neg neg w + neg + + + + neg
Negativibacillus massiliensis Firmicutes Minor neg + + +
Negativicoccus massiliensis Firmicutes Rare neg
Negativicoccus succinicivorans Firmicutes Rare neg
Neglecta timonensis Firmicutes Rare +
Neisseria bacilliformis Proteobacteria Rare neg neg neg neg
Neisseria canis Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg neg
Neisseria cinerea Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg neg
Neisseria elongata Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg neg
Neisseria flava Proteobacteria Rare neg neg neg + neg neg neg d neg neg
Neisseria flavescens Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg neg
Neisseria gonorrhoeae Proteobacteria Non neg neg neg neg neg neg neg neg neg neg neg
Neisseria lactamica Proteobacteria Rare neg neg neg d(+) + neg neg neg neg neg neg
Neisseria macacae Proteobacteria Rare neg neg neg + neg neg neg + neg neg
Neisseria meningitidis Proteobacteria Unlikely neg neg neg neg d neg neg neg neg neg neg
Neisseria mucosa Proteobacteria Rare neg neg neg neg + neg neg neg + neg neg
Neisseria oralis Proteobacteria Rare neg d(neg) + neg d
Neisseria perflava Proteobacteria Rare neg neg neg neg + neg neg neg + neg neg
Neisseria polysaccharea Proteobacteria Rare neg neg + d
Neisseria shayeganii Proteobacteria Rare neg neg neg neg neg neg neg neg
Neisseria sicca Proteobacteria Rare neg neg neg neg + neg neg neg + neg neg
Neisseria subflava Proteobacteria Rare neg neg neg neg + neg neg neg d neg neg
Neoactinobaculum massilliense Actinobacteria Rare + neg neg neg + neg neg + + + +
Neobacillus bataviensis Firmicutes Rare + + + + + + d + d + +
Neobacillus fumarioli Firmicutes Unlikely + neg neg d d d d d + w d
Neobacillus jeddahensis Firmicutes Rare + neg neg neg + w neg neg neg + neg
Neobacillus massiliamazoniensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Neobacillus niacini Firmicutes Rare + d(+) d(+) d(+) + d(+) + d(+) + +
Neobacillus pocheonensis Firmicutes Unlikely + neg neg
Neobacillus soli Firmicutes Rare + neg neg neg w neg neg neg d w neg
Neobittarella massiliensis Firmicutes Moderate +
Neofamilia massiliensis Firmicutes Rare
Nesterenkonia massiliensis Actinobacteria Rare + neg neg neg + + +
Nevskia ramosa Proteobacteria Unlikely neg
Niallia nealsonii Firmicutes Rare + + + + + + + + + + +
Niameybacter massiliensis Firmicutes Rare +
Nigerium massiliense Actinobacteria Rare +
Nitriliruptor alkaliphilus Actinobacteria Unlikely +
Nitrosomonas eutropha Proteobacteria Rare neg
Nocardia asteroides Actinobacteria Rare +
Nocardia brevicatena Actinobacteria Rare +
Nocardia cyriacigeorgica Actinobacteria Rare +
Nocardia mangyaensis Actinobacteria Unlikely +
Nocardia otitidiscaviarum Actinobacteria Rare +
Nocardioides jensenii Actinobacteria Unlikely +
Nocardioides kribbensis Actinobacteria Unlikely +
Nocardioides massiliensis Actinobacteria Unlikely + neg neg + neg neg neg neg neg neg neg
Nosocomiicoccus massiliensis Firmicutes Rare + neg neg neg
Noviherbaspirillum massiliense Proteobacteria Rare neg
Novosphingobium capsulatum Proteobacteria Unlikely neg + + + + + + +
Numidum massiliense Firmicutes Rare + + + neg
Obesumbacterium proteus Proteobacteria Rare neg neg + w
Oceanidesulfovibrio marinus Proteobacteria Unlikely neg
Oceanithermus profundus Deinococcus-Thermus Unlikely neg
Oceanobacillus caeni Firmicutes Rare + + w
Oceanobacillus iheyensis Firmicutes Unlikely + + neg neg +
Oceanobacillus jeddahense Firmicutes Rare + neg + +
Oceanobacillus manasiensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Oceanobacillus massiliensis Firmicutes Rare + + neg neg + neg neg neg neg + neg
Oceanobacillus oncorhynchi Firmicutes Non + neg + + + + +
Oceanobacillus picturae Firmicutes Unlikely + w w w
Oceanobacillus senegalensis Firmicutes Unlikely +
Oceanobacillus sojae Firmicutes Rare + + neg neg + + neg neg + + neg
Oceanobacillus timonensis Firmicutes Unlikely +
Ochrobactrum anthropi Proteobacteria Unlikely neg neg neg
Ochrobactrum intermedium Proteobacteria Unlikely neg neg neg
Odoribacter laneus Bacteroidetes Minor neg neg neg neg neg neg neg neg
Odoribacter massiliensis Bacteroidetes Minor
Odoribacter splanchnicus Bacteroidetes Widespread neg neg
Oenococcus oeni Firmicutes Unlikely + d(+) neg neg d(+) neg neg +
Oerskovia turbata Actinobacteria Rare + + neg + d d(neg) + +
Okadaella gastrococcus Firmicutes Rare neg
Olegusella massiliensis Actinobacteria Rare + neg neg +
Oleidesulfovibrio alaskensis Proteobacteria Rare neg
Oleidesulfovibrio vietnamensis Proteobacteria Rare neg
Oligella urethralis Proteobacteria Rare neg neg
Olsenella congonensis Actinobacteria Rare +
Olsenella massiliensis Actinobacteria Rare +
Olsenella phocaeensis Actinobacteria Rare +
Olsenella profusa Actinobacteria Rare + + + + neg + + + +
Olsenella timonensis Actinobacteria Rare +
Olsenella uli Actinobacteria Rare + neg d(neg) + neg neg neg + neg
Olsenella urininfantis Actinobacteria Rare +
Oribacterium asaccharolyticum Firmicutes Rare vr
Oribacterium parvum Firmicutes Rare vr neg + + w neg
Oribacterium sinus Firmicutes Minor vr neg neg neg neg neg + + neg
Ornithinibacillus contaminans Firmicutes Unlikely +
Ornithinibacillus massiliensis Firmicutes Rare +
Ornithobacterium rhinotracheale Bacteroidetes Rare neg + d(+) neg neg
Oscillibacter massiliensis Firmicutes Rare neg
Oscillibacter ruminantium Firmicutes Rare neg neg neg neg neg neg neg neg neg
Oscillibacter valericigenes Firmicutes Minor neg neg neg neg neg neg neg neg neg
Oscillospira guillermondii Firmicutes Rare +
Ottowia massiliensis Pseudomonadota Rare neg
Oxalobacter formigenes Proteobacteria Moderate neg
Pacaella massiliensis Synergistetes Rare neg
Paenarthrobacter aurescens Actinobacteria Rare +
Paenarthrobacter ilicis Actinobacteria Non +
Paenibacillus alvei Firmicutes Unlikely + + d neg + neg neg neg neg d neg
Paenibacillus amylolyticus Firmicutes Rare + + + + + + +
Paenibacillus anaericanus Firmicutes Rare neg + + + + neg + + + + +
Paenibacillus antibioticophila Firmicutes Rare + + + + + + + + + neg
Paenibacillus azoreducens Firmicutes Rare vr + + + + + +
Paenibacillus barcinonensis Firmicutes Unlikely + + + + + neg + + + + +
Paenibacillus barengoltzii Firmicutes Unlikely + neg neg neg neg
Paenibacillus borealis Firmicutes Unlikely neg + + + + + + + + + +
Paenibacillus bouchesdurhonensis Firmicutes Rare neg + + +
Paenibacillus chibensis Firmicutes Unlikely + + neg + + + +
Paenibacillus chitinolyticus Firmicutes Rare vr
Paenibacillus cineris Firmicutes Rare vr + + + + + + + + + +
Paenibacillus cookii Firmicutes Unlikely vr + + + + + + + + + +
Paenibacillus daejeonensis Firmicutes Rare vr + + +
Paenibacillus dendritiformis Firmicutes Rare neg + neg + +
Paenibacillus donghaensis Firmicutes Unlikely + + + + + neg + + + + +
Paenibacillus durus Firmicutes Rare + neg + + + +
Paenibacillus faecis Firmicutes Rare + + + + + neg + + + + +
Paenibacillus favisporus Firmicutes Rare vr + + + + +
Paenibacillus glucanolyticus Firmicutes Rare neg + + + + + +
Paenibacillus graminis Firmicutes Unlikely + + d + + + + + + + +
Paenibacillus ihuae Firmicutes Rare +
Paenibacillus ihumii Firmicutes Rare neg + + + + neg + + + + neg
Paenibacillus illinoisensis Firmicutes Rare + + neg + + + + +
Paenibacillus jamilae Firmicutes Rare vr + + + neg + + + + +
Paenibacillus kribbensis Firmicutes Rare vr + + + + neg + + + + neg
Paenibacillus lactis Firmicutes Rare neg + d + + d + + + + +
Paenibacillus larvae Firmicutes Rare + neg neg neg neg neg neg neg neg + neg
Paenibacillus lautus Firmicutes Rare vr + + + + + + + + +
Paenibacillus macerans Firmicutes Rare + + + + + + + + + + +
Paenibacillus motobuensis Firmicutes Rare neg
Paenibacillus mucilaginosus Firmicutes Unlikely neg +
Paenibacillus naphthalenovorans Firmicutes Unlikely + neg neg neg + neg d neg + + d
Paenibacillus odorifer Firmicutes Unlikely +
Paenibacillus pabuli Firmicutes Rare + + + + + + +
Paenibacillus pasadenensis Firmicutes Rare +
Paenibacillus phocaensis Firmicutes Rare neg + + + + + + + + + neg
Paenibacillus polymyxa Firmicutes Rare neg + + + + neg + + + + +
Paenibacillus provencensis Firmicutes Rare neg + w + + neg + + w neg neg
Paenibacillus pueri Firmicutes Rare + + neg + + + + + + +
Paenibacillus rhizosphaerae Firmicutes Unlikely + + +
Paenibacillus riograndensis Firmicutes Unlikely vr + + + + +
Paenibacillus rubinfantis Firmicutes Rare neg + + +
Paenibacillus sabinae Firmicutes Rare + neg neg neg
Paenibacillus senegalensis Firmicutes Rare neg + + + +
Paenibacillus senegalimassiliensis Firmicutes Rare vr + + +
Paenibacillus stellifer Firmicutes Unlikely +
Paenibacillus thiaminolyticus Firmicutes Unlikely + + + + + + +
Paenibacillus timonensis Firmicutes Rare + + + + + neg + neg neg + neg
Paenibacillus tuaregi Firmicutes Rare vr + + +
Paenibacillus typhae Firmicutes Rare + + + + + + + + + + +
Paenibacillus urinalis Firmicutes Rare neg + w + + neg + + + neg neg
Paenibacillus xylanilyticus Firmicutes Rare + + + +
Paeniclostridium ghonii Firmicutes Rare +
Paeniclostridium sordellii Firmicutes Minor + neg neg + neg neg neg neg
Paenisporosarcina quisquiliarum Firmicutes Unlikely + neg +
Paludibacter jiangxiensis Bacteroidetes Rare neg + + + +
Paludibacter propionicigenes Bacteroidetes Unlikely neg
Paludibaculum fermentans Acidobacteria Unlikely neg + + + + + +
Paludicola psychrotolerans Firmicutes Rare +
Pannonibacter phragmitetus Proteobacteria Unlikely neg neg neg neg
Pantoea agglomerans Proteobacteria Minor neg vr d + d + +
Pantoea conspicua Proteobacteria Rare neg + + + neg +
Pantoea eucalypti Proteobacteria Rare neg + +
Pantoea rodasii Proteobacteria Unlikely neg + + neg + neg + +
Pantoea septica Proteobacteria Rare neg d d + neg +
Pantoea vagans Proteobacteria Rare neg w +
Papillibacter cinnamivorans Firmicutes Rare +
Parabacteroides bouchesdurhonensis Bacteroidetes Minor neg neg + + + + + + + + +
Parabacteroides chinchillae Bacteroidetes Minor neg neg + + neg + + neg
Parabacteroides distasonis Bacteroidetes Widespread neg + + + + + + +
Parabacteroides faecis Bacteroidetes Rare neg + + + + + + +
Parabacteroides goldsteinii Bacteroidetes Moderate neg + + +
Parabacteroides gordonii Bacteroidetes Minor neg neg + + neg + + neg
Parabacteroides johnsonii Bacteroidetes Moderate neg neg + d neg d + d
Parabacteroides massiliensis Bacteroidetes Rare neg + w + + + + w + + +
Parabacteroides merdae Bacteroidetes Widespread neg w + + + + + + +
Parabacteroides pacaensis Bacteroidetes Rare neg neg neg neg neg + neg neg + neg neg
Parabacteroides pekinense Bacteroidetes Rare neg neg + neg neg + neg
Parabacteroides provencensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg
Parabacteroides timonensis Bacteroidetes Minor neg
Paraburkholderia fungorum Proteobacteria Rare neg
Paraburkholderia phytofirmans Proteobacteria Unlikely neg d(neg)
Paracholeplasma brassicae Tenericutes Unlikely neg
Paraclostridium benzoelyticum Firmicutes Rare +
Paraclostridium bifermentans Firmicutes Moderate + vr
Paracoccus aminovorans Proteobacteria Rare neg neg neg neg neg
Paracoccus carotinifaciens Proteobacteria Unlikely neg + + + +
Paracoccus denitrificans Proteobacteria Rare neg
Paracoccus haeundaensis Proteobacteria Unlikely neg
Paracoccus marcusii Proteobacteria Non neg
Paracoccus marinus Proteobacteria Unlikely neg
Paracoccus sphaerophysae Proteobacteria Unlikely neg
Paracoccus yeei Proteobacteria Rare neg d neg neg
Paraeggerthella hongkongensis Actinobacteria Rare + neg neg
Parafannyhessea umbonata Actinobacteria Unlikely + neg neg + neg neg + d
Paraliobacillus quinghaiensis Firmicutes Non + + neg neg
Paramuribaculum intestinale Bacteroidetes Rare neg
Paraprevotella clara Bacteroidetes Moderate neg neg + w neg + neg neg
Paraprevotella xylaniphila Bacteroidetes Moderate neg neg + neg neg + neg neg
Pararheinheimera texasensis Proteobacteria Rare neg
Parascardovia denticolens Actinobacteria Rare + + + neg + + + d
Parasphingorhabdus flavimaris Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Parasporobacterium paucivorans Firmicutes Rare neg
Parasutterella excrementihominis Proteobacteria Moderate neg
Parasutterella secunda Proteobacteria Rare neg
Paratractidigestivibacter faecalis Actinobacteria Rare + neg neg neg neg neg neg neg
Paremcibacter congregatus Proteobacteria Unlikely neg + neg + + neg neg neg neg neg neg
Parolsenella catena Actinobacteria Rare + neg neg + neg neg neg
Parolsenella massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg
Parvibacter caecicola Actinobacteria Rare + neg
Parvimonas micra Firmicutes Moderate + neg neg neg neg neg neg
Pasteurella aerogenes Proteobacteria Rare neg neg neg + neg neg d + neg neg
Pasteurella dagmatis Proteobacteria Rare neg + neg + d(+)
Pasteurella multocida Proteobacteria Rare neg neg neg neg neg neg neg neg + d neg
Paucilactobacillus oligofermentans Firmicutes Non + neg neg w neg neg neg neg neg neg
Paucilactobacillus suebicus Firmicutes Unlikely + d d(neg) + neg + neg d neg
Paucilactobacillus vaccinostercus Firmicutes Unlikely + neg neg neg + neg neg neg neg neg neg
Paucisalibacillus globulus Firmicutes Unlikely + + + neg + neg neg neg + neg +
Pauljensenia bouchesdurhonensis Actinobacteria Minor +
Pauljensenia cellulosilytica Actinobacteria Rare +
Pauljensenia hongkongensis Actinobacteria Rare + neg neg
Pauljensenia keddieii Actinobacteria Minor +
Pauljensenia odontolyticus Actinobacteria Rare +
Pauljensenia turicensis Actinobacteria Rare +
Pectobacterium wasabiae Proteobacteria Unlikely neg + + neg neg neg + +
Pediococcus acidilactici Firmicutes Rare + vr neg neg neg neg neg neg vr neg
Pediococcus claussenii Firmicutes Rare
Pediococcus damnosus Firmicutes Unlikely + + + neg d d neg neg + neg
Pediococcus pentosaceus Firmicutes Minor + + + d + neg neg neg d(neg) d neg
Pedobacter cryoconitis Proteobacteria Non neg
Pedobacter daejeonensis Proteobacteria Unlikely neg
Pedobacter panaciterrae Bacteroidetes Unlikely neg + +
Pedobacter terricola Bacteroidetes Non neg neg neg
Pedomicrobium ferrugineum Proteobacteria Rare neg
Pelistega indica Proteobacteria Rare neg
Pelobacter propionicus Proteobacteria Rare neg
Pelomonas aquatica Proteobacteria Rare neg
Pelomonas puraquae Proteobacteria Rare neg
Pelomonas saccharophila Proteobacteria Rare neg
Peptacetobacter hiranonis Firmicutes Minor + neg neg neg neg neg neg + neg
Peptoclostridium acidaminophilum Firmicutes Unlikely +
Peptococcus niger Firmicutes Rare +
Peptoniphilus asaccharolyticus Firmicutes Minor + neg neg neg neg neg neg
Peptoniphilus catoniae Firmicutes Rare +
Peptoniphilus colimassiliensis Firmicutes Rare + neg w + + + neg neg + + +
Peptoniphilus duerdenii Firmicutes Rare + neg
Peptoniphilus gorbachii Firmicutes Rare +
Peptoniphilus grossensis Firmicutes Rare + neg
Peptoniphilus harei Firmicutes Minor + neg neg neg neg neg neg
Peptoniphilus indolicus Firmicutes Rare + neg neg neg neg
Peptoniphilus ivorii Firmicutes Rare + neg neg neg neg neg neg
Peptoniphilus koenoeneniae Firmicutes Rare + neg neg neg
Peptoniphilus lacrimalis Firmicutes Minor + neg neg neg neg neg neg neg
Peptoniphilus obesi Firmicutes Rare +
Peptoniphilus pacaensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Peptoniphilus phoceensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Peptoniphilus senegalensis Firmicutes Rare + neg
Peptoniphilus timonensis Firmicutes Rare + neg
Peptostreptococcus anaerobius Firmicutes Moderate + neg + neg neg neg neg
Peptostreptococcus russellii Firmicutes Rare + neg
Peptostreptococcus stomatis Firmicutes Minor + neg neg w(+) neg neg neg neg neg
Peribacillus psychrosaccharolyticus Firmicutes Unlikely vr d neg + neg d +
Peribacillus simplex Firmicutes Rare vr neg neg neg d(w) neg neg neg + d(w) neg
Petrimonas mucosa Bacteroidetes Unlikely neg
Petrimonas sulfuriphila Bacteroidetes Rare neg + + + +
Petrobacter succinatimandens Proteobacteria Rare neg
Petrocella atlantisensis Firmicutes Unlikely +
Phascolarctobacterium faecium Firmicutes Minor neg
Phascolarctobacterium succinatutens Firmicutes Moderate neg neg neg neg neg neg neg neg
Phenylobacterium falsum Proteobacteria Unlikely neg
Phenylobacterium haematophilum Proteobacteria Rare neg
Phenylobacterium lituiforme Proteobacteria Unlikely neg
Phocaeicola barnesiae Bacteroidetes Moderate neg + + + neg + + neg
Phocaeicola coprocola Bacteroidetes Widespread neg + + + neg + + neg
Phocaeicola coprophilus Bacteroidetes Widespread neg w + + +
Phocaeicola dorei Bacteroidetes Widespread neg neg + + neg + + neg
Phocaeicola massiliensis Bacteroidetes Minor neg neg + + neg + + + neg
Phocaeicola paurosaccharolyticus Bacteroidetes Rare neg neg neg neg neg
Phocaeicola plebeius Bacteroidetes Widespread neg + + + neg vr + neg
Phocaeicola salanitronis Bacteroidetes Minor neg + + + neg d + neg
Phocaeicola sartorii Bacteroidetes Moderate neg + + + neg + + d neg
Phocaeicola vulgatus Bacteroidetes Widespread neg neg + + neg w + + neg
Phocea massiliensis Firmicutes Minor neg
Phoenicibacter congonensis Actinobacteria Rare + + + + + + + + + +
Phyllobacterium myrsinacearum Proteobacteria Rare neg
Pigmentiphaga kullae Proteobacteria Rare neg neg neg neg neg neg neg neg
Planococcus massiliensis Firmicutes Unlikely + neg neg neg
Planococcus rifietoensis Firmicutes Unlikely +
Planomicrobium chinense Firmicutes Unlikely + neg neg neg neg neg
Planomicrobium koreense Firmicutes Unlikely + + neg + + neg + neg neg neg neg
Planomicrobium okeanokoites Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Plesiomonas shigelloides Proteobacteria Rare neg neg neg + neg +
Pluralibacter gergoviae Proteobacteria Rare neg + d + + + + +
Pontibacillus litoralis Firmicutes Rare + neg + neg neg neg + + +
Porphyromonas asaccharolytica Bacteroidetes Minor neg neg neg neg neg neg neg neg
Porphyromonas bennonis Bacteroidetes Rare neg neg
Porphyromonas cangingivalis Bacteroidetes Unlikely neg neg neg neg neg
Porphyromonas canoris Bacteroidetes Rare neg neg neg neg neg neg
Porphyromonas crevioricanis Bacteroidetes Unlikely neg neg neg neg neg neg neg neg
Porphyromonas endodontalis Bacteroidetes Minor neg neg
Porphyromonas gingivalis Bacteroidetes Unlikely neg neg neg neg neg neg neg neg
Porphyromonas levii Bacteroidetes Rare neg neg + neg neg neg neg neg neg
Porphyromonas macacae Bacteroidetes Rare neg neg neg neg + neg
Porphyromonas somerae Bacteroidetes Minor neg neg w w neg neg neg neg
Porphyromonas uenonis Bacteroidetes Minor neg neg
Pragia fontium Proteobacteria Rare neg neg neg neg neg neg neg
Prevotella albensis Bacteroidetes Rare neg + + + neg neg neg neg
Prevotella amnii Bacteroidetes Rare neg neg + + neg neg neg
Prevotella aurantiaca Bacteroidetes Rare neg neg neg + neg + + neg
Prevotella baroniae Bacteroidetes Rare neg + + + neg + + + neg
Prevotella bergensis Bacteroidetes Moderate neg + + + neg neg neg neg d
Prevotella bivia Bacteroidetes Moderate neg neg + + neg neg vr neg neg
Prevotella brevis Bacteroidetes Minor neg + + + + + + + neg
Prevotella bryantii Bacteroidetes Rare neg + neg + + + + + neg
Prevotella buccae Bacteroidetes Minor neg + + vr neg + + + neg
Prevotella buccalis Bacteroidetes Minor neg + + + neg + neg
Prevotella conceptionensis Bacteroidetes Rare neg + + + + + +
Prevotella copri Bacteroidetes Widespread neg + + + vr vr +
Prevotella corporis Bacteroidetes Moderate neg neg neg + neg neg neg neg neg
Prevotella dentalis Bacteroidetes Minor neg + + + neg w + w
Prevotella dentasini Bacteroidetes Rare neg neg neg + + + neg
Prevotella denticola Bacteroidetes Minor neg neg + + neg neg + + neg
Prevotella disiens Bacteroidetes Minor neg neg neg + neg neg neg neg neg
Prevotella enoeca Bacteroidetes Rare neg neg + + neg neg neg neg neg
Prevotella falsenii Bacteroidetes Rare
Prevotella fusca Bacteroidetes Unlikely neg + + neg + + neg
Prevotella herbatica Bacteroidetes Unlikely neg
Prevotella histicola Bacteroidetes Rare neg neg + + neg neg + + neg
Prevotella ihumii Bacteroidetes Rare neg neg neg neg + neg neg neg neg neg neg
Prevotella intermedia Bacteroidetes Minor neg neg neg + neg neg d + neg
Prevotella jejuni Bacteroidetes Rare neg neg + + neg + + neg
Prevotella lascolaii Bacteroidetes Minor neg neg neg neg + neg +
Prevotella loescheii Bacteroidetes Rare neg + + + d + + neg
Prevotella maculosa Bacteroidetes Rare neg + neg + + +
Prevotella marseillensis Bacteroidetes Rare neg + + + + + + + + + +
Prevotella marshii Bacteroidetes Rare neg neg neg + neg neg neg neg neg
Prevotella melaninogenica Bacteroidetes Moderate neg neg + + neg neg + + neg
Prevotella merdae Bacteroidetes Rare neg
Prevotella micans Bacteroidetes Rare neg + + + neg + + + neg
Prevotella multiformis Bacteroidetes Rare neg + + + neg + + neg
Prevotella multisaccharivorax Bacteroidetes Minor neg + + + + + + +
Prevotella nanceiensis Bacteroidetes Rare neg vr + neg + + neg
Prevotella nigrescens Bacteroidetes Minor neg neg neg + neg neg + + neg
Prevotella oralis Bacteroidetes Minor neg d(+) + + neg d(+) + + neg
Prevotella oris Bacteroidetes Moderate neg + + neg + + neg
Prevotella oryzae Bacteroidetes Unlikely neg
Prevotella oulorum Bacteroidetes Rare neg neg + + neg + + neg
Prevotella pallens Bacteroidetes Rare neg neg neg + + +
Prevotella paludivivens Bacteroidetes Rare neg
Prevotella phocaeensis Bacteroidetes Rare neg neg neg neg neg neg neg + + neg neg
Prevotella pleuritidis Bacteroidetes Rare neg neg + + neg neg neg neg
Prevotella rara Bacteroidetes Rare neg + neg + neg + + neg
Prevotella rectalis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg neg
Prevotella ruminicola Bacteroidetes Minor neg w(+) neg + + + + neg
Prevotella saccharolytica Bacteroidetes Rare neg + + + neg + + neg
Prevotella salivae Bacteroidetes Rare neg + + + neg + + neg
Prevotella scopos Bacteroidetes Unlikely neg neg + + + + + neg
Prevotella seregens Bacteroidetes Rare
Prevotella shahii Bacteroidetes Rare neg neg + + neg + + neg
Prevotella stercorea Bacteroidetes Moderate neg neg + + neg + +
Prevotella timonensis Bacteroidetes Minor neg neg + + neg neg neg neg
Prevotella veroralis Bacteroidetes Minor neg d(+) + + neg neg + + neg
Prevotellamassilia timonensis Bacteroidetes Minor neg
Priestia flexa Firmicutes Rare vr neg + + + + +
Priestia koreensis Firmicutes Unlikely + + + + + + +
Priestia megaterium Firmicutes Rare + + + d(neg) + + + neg + + +
Prochlorococcus marinus Cyanobacteria Rare neg
Prolixibacter bellariivorans Bacteroidetes Unlikely neg + + + + + + + + +
Propionibacterium acidifaciens Actinobacteria Rare + neg + + neg + + +
Propionibacterium freudenreichii Actinobacteria Rare + + + neg neg + neg
Propionimicrobium lymphophilum Actinobacteria Rare neg neg neg + neg neg
Prosthecobacter fluviatilis Verrucomicrobia Rare neg
Proteiniphilum saccharofermentans Bacteroidetes Unlikely neg
Proteus mirabilis Proteobacteria Moderate neg neg neg neg + +
Proteus penneri Proteobacteria Rare neg neg neg + neg neg + w
Proteus vulgaris Proteobacteria Rare neg neg neg + + d(+)
Provencibacterium massiliense Firmicutes Moderate neg
Providencia alcalifaciens Proteobacteria Minor neg neg neg neg neg neg
Providencia heimbachae Proteobacteria Rare neg neg neg w neg neg neg neg neg
Providencia rettgeri Proteobacteria Minor neg neg neg neg neg neg neg neg
Providencia rustigianii Proteobacteria Rare neg neg neg neg neg w neg
Providencia stuartii Proteobacteria Rare neg neg neg d d +
Pseudarthrobacter oxydans Actinobacteria Rare +
Pseudarthrobacter polychromogenes Actinobacteria Unlikely vr
Pseudescherichia vulneris Proteobacteria Rare neg + neg + + + neg +
Pseudobutyrivibrio ruminis Firmicutes Rare neg + + + + +
Pseudobutyrivibrio xylanivorans Firmicutes Unlikely neg
Pseudochrobactrum asaccharolyticum Proteobacteria Rare neg
Pseudochrobactrum saccharolyticum Proteobacteria Rare neg
Pseudocitrobacter anthropi Proteobacteria Rare neg + neg + neg +
Pseudocitrobacter faecalis Proteobacteria Rare neg + + + neg d neg +
Pseudoclavibacter alba Actinobacteria Rare +
Pseudoclavibacter helvolus Actinobacteria Unlikely +
Pseudoclavibacter sp. Timone Actinobacteria Rare +
Pseudoclostridium thermosuccinogenes Firmicutes Unlikely neg
Pseudodesulfovibrio aespoeensis Proteobacteria Unlikely neg
Pseudodesulfovibrio indicus Proteobacteria Unlikely neg
Pseudoflavonifractor capillosus Firmicutes Moderate neg w w w neg neg neg w neg
Pseudoglutamicibacter albus Actinobacteria Rare +
Pseudoglutamicibacter cumminsii Actinobacteria Unlikely + neg neg neg
Pseudomonas aeruginosa Proteobacteria Rare neg neg neg neg neg
Pseudomonas alcaligenes Proteobacteria Non neg
Pseudomonas alcaliphila Proteobacteria Rare neg neg neg neg neg neg neg neg
Pseudomonas asiatica Proteobacteria Rare neg
Pseudomonas asplenii Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg + neg
Pseudomonas boreopolis Proteobacteria Non neg +
Pseudomonas caricapapayae Proteobacteria Non neg
Pseudomonas chlororaphis Proteobacteria Non neg
Pseudomonas citronellolis Proteobacteria Rare neg neg neg neg
Pseudomonas fluorescens Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg
Pseudomonas fragi Proteobacteria Rare neg
Pseudomonas fulva Proteobacteria Rare neg
Pseudomonas gessardii Proteobacteria Non neg neg neg
Pseudomonas japonica Proteobacteria Non neg
Pseudomonas libanensis Proteobacteria Non neg
Pseudomonas lundensis Proteobacteria Non neg + neg + neg + neg neg neg
Pseudomonas luteola Proteobacteria Unlikely neg neg neg + neg neg +
Pseudomonas massiliensis Proteobacteria Non neg + + + +
Pseudomonas mendocina Proteobacteria Rare neg
Pseudomonas migulae Proteobacteria Non neg
Pseudomonas monteilii Proteobacteria Unlikely neg
Pseudomonas mosselii Proteobacteria Non neg
Pseudomonas nitroreducens Proteobacteria Unlikely neg
Pseudomonas oleovorans Proteobacteria Unlikely neg + neg + neg neg
Pseudomonas oryzihabitans Proteobacteria Unlikely neg neg neg + neg +
Pseudomonas parafulva Proteobacteria Unlikely neg
Pseudomonas protegens Proteobacteria Unlikely neg
Pseudomonas putida Biovar A Proteobacteria Rare neg neg neg neg neg
Pseudomonas putida Biovar B Proteobacteria Rare neg neg neg neg neg
Pseudomonas rhodesiae Proteobacteria Non neg
Pseudomonas saudiphocaensis Proteobacteria Rare neg
Pseudomonas straminea Proteobacteria Unlikely neg neg neg neg
Pseudomonas stutzeri Proteobacteria Unlikely neg neg neg neg neg
Pseudomonas taetrolens Proteobacteria Non neg
Pseudomonas tolaasii Proteobacteria Unlikely neg +
Pseudomonas veronii Proteobacteria Rare neg
Pseudomonas weihenstephanensis Proteobacteria Unlikely neg
Pseudomonas xanthomarina Proteobacteria Non neg
Pseudomonas yamanorum Proteobacteria Unlikely neg neg + neg neg neg + neg neg + neg
Pseudomonas zhaodongensis Proteobacteria Unlikely neg +
Pseudonocardia dioxanivorans Actinobacteria Unlikely + + + +
Pseudoprevotella muciniphila Bacteroidetes Rare neg neg
Pseudopropionibacterium massiliense Actinobacteria Rare + neg neg + + + neg + neg neg +
Pseudoramibacter alactolyticus Firmicutes Rare + neg neg neg neg neg neg neg neg
Pseudoruegeria marinistellae Proteobacteria Rare neg
Pseudoruminococcus massiliensis Firmicutes Rare neg neg
Pseudoxanthomonas broegbernensis Proteobacteria Unlikely neg
Pseudoxanthomonas japonensis Proteobacteria Unlikely neg
Pseudoxanthomonas mexicana Proteobacteria Rare neg
Pseudoxanthomonas spadix Proteobacteria Rare neg neg neg neg neg neg neg
Pseudoxanthomonas suwonensis Proteobacteria Rare neg
Pseudoxanthomonas taiwanensis Proteobacteria Rare neg
Psychrobacter alimentarius Proteobacteria Unlikely + + + neg neg + neg neg neg
Psychrobacter arenosus Proteobacteria Unlikely neg + neg neg
Psychrobacter cibarius Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Psychrobacter faecalis Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Psychrobacter fulvigenes Proteobacteria Rare neg neg neg
Psychrobacter maritimus Proteobacteria Unlikely neg neg neg
Psychrobacter namhaensis Proteobacteria Unlikely neg + + neg neg + neg neg neg
Psychrobacter phenylpyruvicus Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Psychrobacter pulmonis Proteobacteria Unlikely neg neg neg
Pusillimonas faecalis Firmicutes Rare neg
Pygmaiobacter massiliensis Firmicutes Minor +
Pyramidobacter piscolens Synergistetes Minor neg neg
Rahnella aquatilis Proteobacteria Unlikely neg + + + + +
Ralstonia mannitolilytica Proteobacteria Rare neg + + neg neg neg neg neg neg
Ralstonia pickettii Biovar Va-1&2 Proteobacteria Rare neg + d d neg neg neg neg neg
Raoultella ornithinolytica Proteobacteria Minor neg + + + + neg + + + +
Raoultella planticola Proteobacteria Rare neg + + + neg + + + +
Raoultella terrigena Proteobacteria Rare neg + + + + + + + +
Raoultibacter massiliensis Actinobacteria Rare + neg + + + + neg + + + neg
Raoultibacter timonensis Actinobacteria Rare + + + + + + neg + + + +
Rheinheimera perlucida Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg neg
Rhizobium metallidurans Proteobacteria Unlikely neg
Rhizorhabdus wittichii Proteobacteria Unlikely neg neg neg + neg neg neg neg neg
Rhodanobacter ginsenosidimutans Proteobacteria Unlikely neg
Rhodococcus erythropolis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Rhodococcus hoagii Actinobacteria Rare +
Rhodococcus jostii Actinobacteria Non + + neg
Rhodococcus opacus Actinobacteria Unlikely + + +
Rhodococcus qingshengii Actinobacteria Unlikely +
Rhodococcus rhodochrous Actinobacteria Rare + neg neg neg
Rhodoplanes serenus Proteobacteria Unlikely neg
Rhodothermus marinus Bacteroidetes Non neg
Riemerella columbina Bacteroidetes Rare neg + neg
Rikenella microfusus Bacteroidetes Rare neg neg + neg neg + neg neg
Risungbinella massiliensis Firmicutes Rare + neg neg + neg neg neg neg neg
Robertmurraya andreesenii Firmicutes Unlikely +
Robertmurraya kyonggiensis Firmicutes Rare + + + w + neg neg neg neg + w
Robertmurraya massiliosenegalensis Firmicutes Rare + + neg + neg +
Robinsoniella peoriensis Firmicutes Rare + + + + +
Romboutsia hominis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Romboutsia ilealis Firmicutes Rare vr neg neg neg neg neg neg + + neg neg
Romboutsia lituseburensis Firmicutes Minor + neg neg neg + neg neg neg + neg neg
Romboutsia maritimum Firmicutes Rare +
Romboutsia timonensis Firmicutes Moderate + + +
Romboutsia weinsteinii Firmicutes Rare +
Roseburia faecis Firmicutes Widespread vr neg
Roseburia hominis Firmicutes Widespread vr vr
Roseburia intestinalis Firmicutes Widespread vr neg + + neg
Roseburia inulinivorans Firmicutes Widespread vr neg
Roseobacter denitrificans Proteobacteria Non neg
Roseomonas gilardii Proteobacteria Rare neg neg neg neg neg
Roseomonas mucosa Proteobacteria Rare neg
Rossellomorea aquimaris Firmicutes Unlikely vr neg neg neg + neg neg neg + + neg
Rossellomorea marisflavi Firmicutes Rare vr + + neg + neg + w(+) + + neg
Rossellomorea vietnamensis Firmicutes Rare + neg neg neg + neg neg neg + + neg
Rothia aeria Actinobacteria Minor + neg + neg neg + +
Rothia dentocariosa Actinobacteria Minor + neg neg + neg neg + + vr
Rothia halotolerans Actinobacteria Unlikely + neg neg neg + + neg neg w neg +
Rothia koreensis Actinobacteria Rare +
Rothia kristinae Actinobacteria Rare + d d(+) neg +
Rothia mucilaginosa Actinobacteria Moderate + neg neg d(+) neg neg neg + d(+) vr
Rothia terrae Actinobacteria Rare + + + + +
Rubeoparvulum massiliense Firmicutes Rare neg + neg + + neg neg neg neg neg neg
Rubinisphaera brasiliensis Planctomycetes Non neg
Rubneribacter badeniensis Actinobacteria Minor + neg neg neg neg neg neg neg
Rubrobacter xylanophilus Actinobacteria Non +
Rudanella lutea Bacteroidetes Unlikely neg
Ruminiclostridium cellobioparum Firmicutes Rare vr
Ruminiclostridium cellulolyticum Firmicutes Unlikely + + neg neg neg neg neg neg
Ruminiclostridium herbifermentans Firmicutes Unlikely vr +
Ruminiclostridium josui Firmicutes Rare + w + w neg
Ruminococcus albus Firmicutes Moderate + + + neg neg + neg
Ruminococcus bicirculans Firmicutes Moderate +
Ruminococcus bovis Firmicutes Unlikely + neg neg neg + neg neg neg neg neg neg
Ruminococcus bromii Firmicutes Widespread + neg neg + neg d(neg) neg neg neg
Ruminococcus callidus Firmicutes Widespread + + + + d(neg) + + vr
Ruminococcus champanellensis Firmicutes Moderate + + neg
Ruminococcus flavefaciens Firmicutes Moderate + + + neg neg neg neg
Ruminococcus gauvreauii Firmicutes Minor + neg neg neg neg neg neg + neg
Ruminococcus gnavus Firmicutes Widespread + neg neg + neg + neg neg
Ruminococcus lactaris Firmicutes Widespread + neg + vr neg neg neg neg neg
Ruminococcus phoceensis Firmicutes Rare +
Ruminococcus torques Firmicutes Widespread + neg + w neg neg neg neg neg
Rummeliibacillus pycnus Firmicutes Unlikely + neg neg
Rummeliibacillus stabekisii Firmicutes Rare + neg neg
Rummeliibacillus suwonensis Firmicutes Rare +
Ruoffia tabacinasalis Firmicutes Rare + neg neg neg
Ruthenibacterium lactatiformans Firmicutes Moderate neg neg + neg neg
Saccharibacillus brassicae Firmicutes Unlikely +
Saccharofermentans acetigenes Firmicutes Non + w w neg w neg + w
Salimicrobium jeotgali Firmicutes Non + + neg
Salinicoccus halodurans Firmicutes Unlikely + + neg + + neg neg neg + + +
Salinisphaera halophila Proteobacteria Non neg neg neg neg neg neg neg neg neg neg neg
Salinivibrio costicola Proteobacteria Rare neg + neg + + +
Salmonella bongori Proteobacteria Rare neg neg
Salmonella enterica Proteobacteria Unlikely neg neg neg + neg neg vr
Salmonella enterica subsp. arizonae Proteobacteria Non neg neg d(neg) + + neg neg +
Salmonella enterica subsp. enterica serovar Choleraesuis Proteobacteria Unlikely neg neg neg + d neg neg +
Salmonella enterica subsp. enterica serovar Enteritidis Proteobacteria Rare neg neg neg + + neg neg +
Salmonella enterica subsp. enterica serovar Paratyphi A Proteobacteria Rare neg neg neg + + neg neg +
Salmonella enterica subsp. enterica serovar Typhi Proteobacteria Rare neg neg neg + + neg neg +
Salmonella enterica subsp. enterica serovar Typhimurium Proteobacteria Rare neg neg neg + + neg neg +
Sanguibacter massiliensis Actinobacteria Rare +
Sarcina maxima Firmicutes Rare + neg vr + neg neg + neg
Sarcina ventriculi Firmicutes Minor + d + + + neg + neg
Scardovia inopinata Actinobacteria Rare + neg + d(+) + d + + + neg +
Scardovia wiggsiae Actinobacteria Minor + neg d + neg d + + neg
Schaalia cardiffensis Actinobacteria Rare + neg neg neg neg neg d neg
Schaalia hyovaginalis Actinobacteria Rare + d neg d + neg neg neg + neg +
Schaalia meyeri Actinobacteria Rare + neg d + neg neg neg + neg
Schaalia odontolytica Actinobacteria Moderate + neg d neg
Schaalia radingae Actinobacteria Rare + vr vr + vr vr vr + vr
Schaalia turicensis Actinobacteria Rare + d d + d d d + d
Schleiferilactobacillus harbinensis Firmicutes Unlikely + + + + + + + + + + +
Schleiferilactobacillus perolens Firmicutes Unlikely + + + d + + + + + + +
Schleiferilactobacillus shenzhenensis Firmicutes Unlikely
Schlesneria paludicola Planctomycetes Unlikely neg
Schnuerera ultunensis Firmicutes Unlikely +
Sebaldella termitidis Fusobacteria Unlikely neg d + neg + +
Sediminibacillus massiliensis Firmicutes Rare +
Sediminispirochaeta smaragdinae Spirochaetes Unlikely neg
Selenomonas artemidis Firmicutes Rare neg neg neg d(+) neg neg neg + neg
Selenomonas bovis Firmicutes Rare neg
Selenomonas flueggei Firmicutes Rare neg neg + d(+) neg + + + neg
Selenomonas infelix Firmicutes Rare neg neg + + neg + + + neg
Selenomonas noxia Firmicutes Rare neg neg neg neg neg neg neg neg neg
Selenomonas ruminantium Firmicutes Minor neg + vr + neg + + neg
Selenomonas sputigena Firmicutes Rare neg neg + + neg + + + neg
Selenomonas timonae Firmicutes Unlikely neg
Sellimonas intestinalis Firmicutes Minor + + + + +
Senegalia massiliensis Firmicutes Rare + + + +
Senegalimassilia anaerobia Actinobacteria Minor + neg neg neg neg neg neg neg neg neg
Senegalimassilia faecalis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Serratia ficaria Proteobacteria Rare neg + + d(neg) + + + + + + +
Serratia fonticola Proteobacteria Rare neg neg + + neg + + vr +
Serratia liquefaciens Proteobacteria Rare neg neg neg vr + + + + +
Serratia marcescens Proteobacteria Minor neg neg vr d(w) + neg neg neg + + neg
Serratia odorifera Proteobacteria Rare neg + w + + d d +
Serratia quinivorans Proteobacteria Rare neg neg
Serratia ureilytica Proteobacteria Rare neg neg + neg +
Sharpea azabuensis Firmicutes Rare + + + neg + d d
Shewanella algae Proteobacteria Unlikely neg neg neg neg
Shewanella carassii Proteobacteria Rare neg neg neg
Shewanella decolorationis Proteobacteria Rare neg
Shewanella xiamenensis Proteobacteria Rare neg
Shigella boydii Proteobacteria Rare neg neg d neg neg
Shigella dysenteriae Proteobacteria Unlikely neg neg neg neg neg neg
Shigella flexneri Proteobacteria Minor neg neg neg neg d d neg neg
Shigella sonnei Proteobacteria Minor neg neg w vr neg w w +
Shuttleworthia satelles Firmicutes Rare + + d + + + + +
Silanimonas lenta Proteobacteria Non neg + neg + neg neg
Skermanella aerolata Proteobacteria Unlikely neg neg neg neg neg neg + neg neg neg neg
Slackia equolifaciens Actinobacteria Rare + neg neg neg neg neg neg neg
Slackia exigua Actinobacteria Rare + neg neg neg neg neg neg
Slackia faecicanis Actinobacteria Rare + neg neg neg neg
Slackia heliotrinireducens Actinobacteria Rare +
Slackia isoflavoniconvertens Actinobacteria Rare + neg
Slackia piriformis Actinobacteria Minor + neg
Sneathia sanguinegens Fusobacteria Rare neg + neg neg neg neg d neg neg
Sneathia vaginalis Fusobacteria Rare neg +
Sodaliphilus pleomorphus Bacteroidetes Rare neg
Soleaferrea massiliensis Firmicutes Rare +
Solibacillus silvestris Firmicutes Unlikely +
Solibaculum mannosilyticum Firmicutes Rare vr neg neg neg neg neg neg neg
Solobacterium moorei Firmicutes Minor + neg neg + neg neg neg neg
Sorangium cellulosum Proteobacteria Rare neg
Sphaerotilus natans Proteobacteria Unlikely neg
Sphingobacterium alimentarium Bacteroidetes Unlikely neg + + w
Sphingobacterium faecium Bacteroidetes Rare neg + + + + + + + + + +
Sphingobacterium mizutaii Bacteroidetes Unlikely neg + + + + + + + +
Sphingobacterium multivorum Bacteroidetes Rare neg + + + + + + + +
Sphingobacterium nematocida Bacteroidetes Unlikely neg + + + + + + + + + +
Sphingobacterium siyangense Bacteroidetes Rare neg neg neg neg neg neg neg +
Sphingobacterium spiritivorum Bacteroidetes Rare neg + + + + + + + + +
Sphingobacterium thalpophilum Bacteroidetes Unlikely neg + + + + + +
Sphingobium xenophagum Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Sphingomonas adhaesiva Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Sphingomonas aerolata Proteobacteria Non neg
Sphingomonas aestuarii Proteobacteria Unlikely neg
Sphingomonas azotifigens Proteobacteria Rare neg + + + neg + + +
Sphingomonas bisphenolicum Proteobacteria Unlikely neg + +
Sphingomonas echinoides Proteobacteria Unlikely neg neg neg neg neg neg neg
Sphingomonas glacialis Proteobacteria Unlikely neg neg neg
Sphingomonas hankookensis Proteobacteria Rare neg
Sphingomonas koreensis Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Sphingomonas melonis Proteobacteria Rare neg + + + + neg neg + +
Sphingomonas panni Proteobacteria Rare neg neg neg neg neg neg neg neg
Sphingomonas paucimobilis Proteobacteria Rare neg + + + + w w + vr
Sphingomonas pseudosanguinis Proteobacteria Rare neg
Sphingomonas sinipercae Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Sphingomonas yabuuchiae Proteobacteria Rare neg
Sphingopyxis bauzanensis Proteobacteria Unlikely neg neg neg neg neg
Spiribacter roseus Proteobacteria Non neg
Spirochaeta coccoides Spirochaetes Rare neg +
Spirochaeta thermophila Spirochaetes Non neg
Spirosoma linguale Bacteroidetes Unlikely neg + + + + + + +
Sporobacter termitidis Firmicutes Rare +
Sporolactobacillus laevolacticus Firmicutes Unlikely + w + + +
Sporolactobacillus nakayamae subsp. racemicus Firmicutes Rare + d d + + + + +
Sporomusa termitida Firmicutes Unlikely neg
Sporosarcina aquimarina Firmicutes Non + neg neg neg neg neg neg neg neg neg neg
Sporosarcina koreensis Firmicutes Unlikely + neg
Sporosarcina luteola Firmicutes Rare vr neg neg neg + neg neg neg neg neg neg
Sporosarcina siberiensis Firmicutes Unlikely + + neg neg + neg neg neg + neg neg
Stackebrandtia nassauensis Actinobacteria Unlikely + + + + neg + + + +
Staphylococcus arlettae Firmicutes Rare + vr + + + + + + neg
Staphylococcus aureus subsp. aureus Firmicutes Minor + neg + + neg neg + + vr
Staphylococcus auricularis Firmicutes Rare + vr neg + neg neg + + vr
Staphylococcus capitis subsp. capitis Firmicutes Rare + neg neg neg neg neg neg neg neg
Staphylococcus caprae Firmicutes Rare + neg + + neg neg neg d neg
Staphylococcus carnosus Firmicutes Rare + neg neg d(neg) neg neg neg neg neg d(+) neg
Staphylococcus cohnii subsp. cohnii Firmicutes Rare + neg neg vr neg neg neg neg neg
Staphylococcus condimenti Firmicutes Rare + neg + neg neg neg w + neg
Staphylococcus devriesei Firmicutes Rare + neg neg + + d(+) neg neg + + +
Staphylococcus epidermidis Firmicutes Widespread + neg + + vr neg + neg vr
Staphylococcus equorum subsp. equorum Firmicutes Rare + neg vr + neg + + neg
Staphylococcus gallinarum Firmicutes Rare + + + d + + + + + + +
Staphylococcus haemolyticus Firmicutes Minor + neg + + neg neg + + vr
Staphylococcus hominis subsp. hominis Firmicutes Minor + neg + + neg + vr vr
Staphylococcus hyicus Firmicutes Rare + neg neg + neg neg neg neg + + neg
Staphylococcus intermedius Firmicutes Rare + neg + + neg neg + + vr
Staphylococcus kloosii Firmicutes Rare + neg vr d w(+) neg neg d neg
Staphylococcus lugdunensis Firmicutes Rare + neg + + neg neg + + vr
Staphylococcus nepalensis Firmicutes Rare + neg neg + + neg neg neg + + d
Staphylococcus pasteuri Firmicutes Minor + neg neg + neg + + d
Staphylococcus petrasii Firmicutes Rare + neg neg d(neg) + neg neg neg + + w
Staphylococcus pettenkoferi Firmicutes Rare + neg neg neg neg d neg neg
Staphylococcus pseudintermedius Firmicutes Rare + neg + + neg neg neg + + w
Staphylococcus saccharolyticus Firmicutes Rare + neg neg neg neg neg neg neg neg
Staphylococcus saprophyticus subsp. saprophyticus Firmicutes Rare + neg + + + + vr
Staphylococcus schleiferi subsp. schleiferi Firmicutes Rare + neg neg neg neg neg neg
Staphylococcus simiae Firmicutes Rare + neg + + + neg neg + + +
Staphylococcus simulans Firmicutes Rare + neg + vr neg neg + + neg
Staphylococcus succinus subsp. succinus Firmicutes Unlikely + neg
Staphylococcus warneri Firmicutes Minor + neg d + d(+) neg + + neg
Staphylococcus xylosus Firmicutes Rare + neg + + neg neg + + neg
Starkeya novella Proteobacteria Unlikely neg
Stenotrophomonas acidaminiphila Proteobacteria Unlikely neg
Stenotrophomonas bentonitica Proteobacteria Unlikely neg neg neg + neg neg
Stenotrophomonas maltophilia Proteobacteria Minor neg neg + neg neg
Stenotrophomonas rhizophila Proteobacteria Rare neg
Stomatobaculum longum Firmicutes Minor vr neg neg + neg neg + neg
Streptobacillus hongkongensis Fusobacteria Rare neg
Streptobacillus moniliformis Fusobacteria Unlikely neg
Streptococcus acidominimus Firmicutes Unlikely + + w + + neg neg
Streptococcus agalactiae Firmicutes Minor + d neg vr + neg neg neg + + neg
Streptococcus alactolyticus Firmicutes Rare + d d neg + d d(+) + + d +
Streptococcus anginosus Firmicutes Widespread + + + + + neg d(+) neg + + neg
Streptococcus anginosus subsp. whileyi Firmicutes Rare + d + + d neg + +
Streptococcus australis Firmicutes Minor + neg neg + + neg neg neg + neg neg
Streptococcus caballi Firmicutes Rare + neg + neg + + + +
Streptococcus canis Firmicutes Unlikely + + neg + + neg neg neg + d(neg) neg
Streptococcus castoreus Firmicutes Rare + neg + neg neg neg + neg
Streptococcus constellatus subsp. constellatus Firmicutes Minor + w neg + neg neg neg + w(+)
Streptococcus cristatus Firmicutes Minor + neg d(+) + neg neg vr + vr neg
Streptococcus danieliae Firmicutes Rare + neg d +
Streptococcus didelphis Firmicutes Rare + neg neg +
Streptococcus downei Firmicutes Rare + neg + + neg neg neg + +
Streptococcus dysgalactiae Firmicutes Rare + vr + neg neg + +
Streptococcus dysgalactiae subsp. equisimilis Firmicutes Unlikely + d + neg + +
Streptococcus equi subsp. equi Firmicutes Rare + neg + neg neg + neg
Streptococcus equinus Firmicutes Moderate + + + d(+) + neg d(+) d(+) + d neg
Streptococcus ferus Firmicutes Rare + + + + + neg d d + + neg
Streptococcus gallolyticus subsp. gallolyticus Firmicutes Minor + + + + + neg neg + + + neg
Streptococcus gordonii Firmicutes Minor + + + + + neg d(neg) d(neg) + + neg
Streptococcus gwangjuense Firmicutes Unlikely + + neg neg
Streptococcus henryi Firmicutes Rare + + neg + neg + +
Streptococcus hyovaginalis Firmicutes Rare + + neg + + neg neg neg + + neg
Streptococcus ilei Firmicutes Unlikely + neg neg + + + d + + neg +
Streptococcus infantarius Firmicutes Minor + + neg + + neg d(+) + + neg neg
Streptococcus infantarius subsp. infantarius Firmicutes Minor + + + neg d(+) + neg
Streptococcus infantis Firmicutes Minor + + + neg neg neg + neg
Streptococcus intermedius Firmicutes Moderate + d(+) + + neg vr vr + d(+)
Streptococcus koreensis Firmicutes Unlikely + + + neg
Streptococcus lactarius Firmicutes Rare + + + neg neg neg + neg
Streptococcus lutetiensis Firmicutes Minor + + + + + neg neg + + vr neg
Streptococcus macedonicus Firmicutes Rare + + neg + + neg d + + neg neg
Streptococcus merionis Firmicutes Rare + + + neg + +
Streptococcus mitis Firmicutes Moderate + d neg + + neg d(+) d(+) + d(neg) neg
Streptococcus mutans Firmicutes Moderate + + + + + neg d(+) + + + neg
Streptococcus oralis Firmicutes Minor + neg vr + + neg + d(+) + d(neg) neg
Streptococcus oralis subsp. tigurinus Firmicutes Rare + + + neg neg + + d(+)
Streptococcus orisratti Firmicutes Rare + + + + neg + + + +
Streptococcus ovis Firmicutes Rare + + + neg neg + + +
Streptococcus pantholopis Firmicutes Rare + + + + + neg neg + + neg
Streptococcus parasanguinis Firmicutes Widespread + d(+) vr + + neg d(+) d(+) + d(+) neg
Streptococcus parasuis Firmicutes Rare + + neg neg + +
Streptococcus parauberis Firmicutes Rare + d(+) d(+) + + vr neg + + +
Streptococcus pasteurianus Firmicutes Minor + + + d d(neg) d + +
Streptococcus periodonticum Firmicutes Unlikely + neg neg +
Streptococcus peroris Firmicutes Rare + + + neg neg neg + neg
Streptococcus pluranimalium Firmicutes Unlikely + d d d d(+) d d(neg) d d(+) + neg
Streptococcus plurextorum Firmicutes Rare + neg neg + + neg neg + + neg
Streptococcus pneumoniae Firmicutes Minor + + + neg w(+) + + +
Streptococcus porci Firmicutes Rare + + neg + + neg + + + + neg
Streptococcus pseudopneumoniae Firmicutes Minor + vr + neg neg + neg
Streptococcus pseudoporcinus Firmicutes Rare + neg + neg + +
Streptococcus pyogenes Firmicutes Minor + vr neg + + neg neg neg + + neg
Streptococcus rubneri Firmicutes Rare + + neg + + neg d + + neg
Streptococcus salivarius Firmicutes Widespread + + vr + + neg neg + + d(+) neg
Streptococcus sanguinis Firmicutes Moderate + d(+) + + + neg d(+) d(+) + + neg
Streptococcus sinensis Firmicutes Rare + + + + neg neg neg + +
Streptococcus sobrinus Firmicutes Minor + w d + neg neg neg + +
Streptococcus suis Firmicutes Rare + neg neg + + neg d(+) d(+) + + neg
Streptococcus thermophilus Firmicutes Widespread + neg + neg d(+) d(+) d + neg
Streptococcus thoraltensis Firmicutes Rare + + + + + d(+) d(+) d(+) + +
Streptococcus timonensis Firmicutes Minor + neg neg neg + neg neg neg + neg neg
Streptococcus uberis Firmicutes Rare + + + + + neg neg neg + + neg
Streptococcus vestibularis Firmicutes Moderate + + + + + neg neg neg + d(+) neg
Streptococcus viridans Firmicutes Rare +
Streptomyces albus Actinobacteria Unlikely +
Streptomyces flavogriseus Actinobacteria Unlikely +
Streptomyces hygroscopicus Actinobacteria Unlikely +
Streptomyces koyangensis Actinobacteria Rare +
Streptomyces lividans Actinobacteria Unlikely +
Streptomyces massiliensis Actinobacteria Unlikely +
Streptomyces misionensis Actinobacteria Rare +
Streptomyces specialis Actinobacteria Unlikely +
Streptomyces thermoviolaceus Actinobacteria Rare + neg neg
Streptomyces thermovulgaris Actinobacteria Unlikely +
Streptomyces violaceusniger Actinobacteria Unlikely +
Streptosporangium roseum Actinobacteria Unlikely +
Subdoligranulum formicile Firmicutes Rare neg
Subdoligranulum variabile Firmicutes Moderate neg neg
Succinatimonas hippei Proteobacteria Minor neg neg neg + neg neg neg neg
Succinivibrio dextrinosolvens Proteobacteria Rare neg neg neg + neg + neg
Sulfurospirillum deleyianum Proteobacteria Rare neg
Sutcliffiella cohnii Firmicutes Unlikely +
Sutterella faecalis Proteobacteria Rare neg neg neg neg neg neg neg neg
Sutterella massiliensis Proteobacteria Rare neg
Sutterella megalosphaeroides Proteobacteria Rare neg neg
Sutterella parvirubra Proteobacteria Minor neg
Sutterella seckii Proteobacteria Rare neg
Sutterella stercoricanis Proteobacteria Rare neg neg neg
Sutterella timonensis Proteobacteria Rare neg
Sutterella wadsworthensis Proteobacteria Widespread neg neg neg neg neg neg neg neg
Symbiobacterium thermophilum Firmicutes Unlikely neg
Symbiobacterium toebii Firmicutes Unlikely neg
Syntrophobotulus glycolicus Firmicutes Unlikely neg
Syntrophococcus sucromutans Firmicutes Rare neg
Syntrophomonas zehnderi Firmicutes Rare vr
Tannerella forsythia Bacteroidetes Minor neg + neg + + neg + +
Tannerella serpentiformis Bacteroidetes Unlikely neg neg
Taonella mepensis Proteobacteria Unlikely neg
Tatumella ptyseos Proteobacteria Rare neg neg neg neg neg w neg + +
Tepidanaerobacter acetatoxydans Firmicutes Rare vr
Tepiditoga spiralis Thermotogae Unlikely neg
Terrahaemophilus aromaticivorans Proteobacteria Rare neg
Terribacillus aidingensis Firmicutes Rare + + + + neg neg + + + + neg
Terribacillus halophilus Firmicutes Unlikely + neg neg
Terrisporobacter glycolicus Firmicutes Minor + +
Terrisporobacter mayombei Firmicutes Rare + + +
Terrisporobacter othiniensis Firmicutes Rare +
Terrisporobacter petrolearius Firmicutes Rare + + +
Tessaracoccus massiliensis Actinobacteria Rare + neg neg +
Tetragenococcus halophilus Firmicutes Unlikely + + neg + neg neg neg + +
Tetragenococcus koreensis Firmicutes Rare + + neg + neg neg neg + + neg
Tetragenococcus solitarius Firmicutes Rare + + + neg + neg neg neg + neg +
Thalassobacillus devorans Firmicutes Non + +
Thauera terpenica Proteobacteria Rare neg
Thermaerobacter marianensis Firmicutes Non vr
Thermoanaerobacterium thermosaccharolyticum Firmicutes Rare neg + + + + +
Thermobacillus composti Firmicutes Unlikely neg
Thermobispora bispora Actinobacteria Unlikely +
Thermoclostridium stercorarium Firmicutes Unlikely neg + + + neg + neg neg neg
Thermolithobacter ferrireducens Firmicutes Non +
Thermomonas carbonis Proteobacteria Unlikely neg
Thermomonospora curvata Actinobacteria Unlikely +
Thermophilibacter immobilis Actinobacteria Unlikely +
Thermophilibacter mediterraneus Actinobacteria Rare +
Thermophilibacter provencensis Actinobacteria Minor +
Thermus scotoductus Deinococcus-Thermus Unlikely neg
Thiomonas islandica Proteobacteria Unlikely neg
Thomasclavelia saccharogumia Firmicutes Rare +
Thomasclavelia spiroformis Firmicutes Moderate + d + neg neg neg + neg
Tidjanibacter inops Bacteroidetes Moderate
Tidjanibacter massiliensis Bacteroidetes Rare neg
Timonella senegalensis Actinobacteria Rare + + + neg neg +
Tissierella praeacuta Firmicutes Rare +
Trabulsiella guamensis Proteobacteria Rare neg + neg + neg neg neg +
Tractidigestivibacter scatoligenes Actinobacteria Rare + + + + neg neg + neg
Traorella massiliensis Firmicutes Rare neg neg neg neg neg neg neg neg neg neg neg
Treponema berlinense Spirochaetes Rare neg neg
Treponema brennaborense Spirochaetes Unlikely neg +
Treponema denticola Spirochaetes Rare neg
Treponema medium Spirochaetes Unlikely neg + + + +
Treponema parvum Spirochaetes Unlikely neg
Treponema pectinovorum Spirochaetes Rare neg neg neg neg neg neg neg
Treponema pedis Spirochaetes Unlikely neg
Treponema peruense Spirochaetes Rare neg + + + +
Treponema phagedenis Spirochaetes Unlikely neg
Treponema primitia Spirochaetes Unlikely neg
Treponema ruminis Spirochaetes Unlikely neg
Treponema socranskii Spirochaetes Unlikely neg neg neg + neg neg d + +
Treponema succinifaciens Spirochaetes Rare neg + + +
Treponema vincentii Spirochaetes Rare neg
Tropheryma whipplei Actinobacteria Unlikely neg
Trueperella bernardiae Actinobacteria Rare + neg + neg neg neg neg
Trueperella pyogenes Actinobacteria Rare + + + + + neg neg d +
Tsukamurella pulmonis Actinobacteria Unlikely + neg neg neg neg neg + +
Tumebacillus avium Firmicutes Unlikely +
Tumebacillus permanentifrigoris Firmicutes Unlikely +
Turicibacter sanguinis Firmicutes Moderate + + neg
Turicimonas muris Proteobacteria Rare neg neg neg neg neg neg neg neg
Tyzzerella nexilis Firmicutes Widespread + neg
Ureaplasma parvum Tenericutes Rare unk
Ureaplasma urealyticum Tenericutes Rare unk
Ureibacillus massiliensis Firmicutes Rare neg neg neg
Ureibacillus suwonensis Firmicutes Unlikely neg
Ureibacillus thermosphaericus Firmicutes Non neg neg neg neg neg neg neg neg neg neg neg
Urinicoccus timonensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Urmitella timonensis Firmicutes Rare +
Uruburuella suis Proteobacteria Rare neg neg neg
Vaginimicrobium propionicum Actinobacteria Unlikely + neg neg + + neg + +
Vagococcus carniphilus Firmicutes Rare + neg + neg neg neg d +
Vagococcus fluvialis Firmicutes Rare + + + neg + neg d + d
Vagococcus lutrae Firmicutes Rare + + neg neg neg + +
Vagococcus penaei Firmicutes Rare + neg + + neg + + +
Vagococcus teuberi Firmicutes Rare + neg + neg neg neg + +
Vampirovibrio chlorellavorus Cyanobacteria Unlikely neg
Varibaculum cambriense Actinobacteria Rare + neg neg vr neg neg neg d(+) vr
Varibaculum timonense Actinobacteria Rare + + + + + neg + neg
Variovorax boronicumulans Proteobacteria Rare neg
Variovorax ginsengisoli Proteobacteria Unlikely neg
Variovorax paradoxus Proteobacteria Unlikely neg
Veillonella atypica Firmicutes Widespread neg neg neg neg neg neg
Veillonella denticariosi Firmicutes Rare neg neg neg neg
Veillonella dispar Firmicutes Moderate neg neg neg neg neg neg neg neg
Veillonella infantium Firmicutes Rare neg
Veillonella magna Firmicutes Rare neg
Veillonella montpellierensis Firmicutes Rare neg neg neg neg neg neg neg neg
Veillonella nakazawae Firmicutes Rare neg
Veillonella parvula Firmicutes Widespread neg neg neg neg neg neg neg neg
Veillonella ratti Firmicutes Rare neg neg
Veillonella rodentium Firmicutes Unlikely neg
Veillonella rogosae Firmicutes Minor neg neg
Veillonella tobetsuensis Firmicutes Minor neg
Vescimonas coprocola Firmicutes Rare neg
Vescimonas fastidiosa Firmicutes Rare neg
Vibrio alginolyticus Proteobacteria Rare neg + neg + neg neg + +
Vibrio cholerae Proteobacteria Unlikely neg neg neg + neg neg + +
Vibrio cincinnatiensis Proteobacteria Rare neg + neg + neg neg + +
Vibrio fluvialis Proteobacteria Rare neg d(neg) neg + neg neg + +
Vibrio furnissii Proteobacteria Rare neg neg neg + neg neg + +
Vibrio metoecus Proteobacteria Rare neg
Vibrio metschnikovii Proteobacteria Rare neg neg d(neg) + neg neg + +
Vibrio mimicus Proteobacteria Rare neg neg d(w) + neg neg neg +
Vibrio natriegens Proteobacteria Rare neg d(+) neg + d d + +
Vibrio neptunius Proteobacteria Unlikely neg neg +
Vibrio parahaemolyticus Proteobacteria Rare neg d neg + neg neg neg +
Vibrio proteolyticus Proteobacteria Rare neg + neg + neg neg neg +
Vibrio rumoiensis Proteobacteria Unlikely neg +
Vibrio vulnificus Proteobacteria Rare neg d d + neg neg d(neg) +
Victivallis vadensis Lentisphaerae Minor neg +
Virgibacillus dakarensis Firmicutes Rare +
Virgibacillus dokdonensis Firmicutes Rare vr + + + neg neg neg + neg neg
Virgibacillus doumboii Firmicutes Rare + neg neg neg +
Virgibacillus halodenitrificans Firmicutes Rare vr neg d + neg neg neg + + neg
Virgibacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg neg +
Virgibacillus massiliensis Firmicutes Rare +
Virgibacillus ndiopensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Virgibacillus pantothenticus Firmicutes Rare + d d d + neg neg + + +
Virgibacillus profundi Firmicutes Unlikely vr neg neg neg w neg
Virgibacillus proomii Firmicutes Rare + d neg neg + neg neg neg d + neg
Virgibacillus salexigens Firmicutes Unlikely + neg d neg neg
Virgibacillus senegalensis Firmicutes Non + neg neg neg
Virgibacillus siamensis Firmicutes Unlikely + + neg + neg neg neg neg
Vitreoscilla massiliensis Proteobacteria Rare neg
Vitreoscilla stercoraria Proteobacteria Rare neg
Weeksella virosa Firmicutes Rare neg neg neg neg neg neg neg
Weissella cibaria Firmicutes Minor + + + neg + neg neg neg + neg neg
Weissella confusa Firmicutes Minor + + neg neg + neg neg neg + neg neg
Weissella paramesenteroides Firmicutes Minor + vr neg neg + neg + d + + +
Weissella viridescens Firmicutes Minor + neg + neg neg d d
Weizmannia coagulans Firmicutes Rare + d d d + neg + d d + d
Winkia neuii Actinobacteria Rare + d d + + + + + + +
Wolinella succinogenes Proteobacteria Rare neg
Xanthomonas massiliensis Proteobacteria Unlikely neg
Xylanimonas cellulosilytica Actinobacteria Rare + + + + + + + + +
Yangia pacifica Proteobacteria Non neg
Yersinia aldovae Proteobacteria Rare neg d neg neg neg neg neg neg +
Yersinia aleksiciae Proteobacteria Rare neg + vr neg +
Yersinia alsatica Proteobacteria Rare neg + + neg + neg neg neg + + neg
Yersinia artesiana Proteobacteria Rare neg + + + + neg neg neg + + neg
Yersinia bercovieri Proteobacteria Rare neg + neg + neg neg + +
Yersinia enterocolitica subsp. enterocolitica Proteobacteria Unlikely neg + neg + neg neg neg + +
Yersinia frederiksenii Proteobacteria Rare neg + neg + neg neg neg + +
Yersinia intermedia Proteobacteria Rare neg + neg + neg + + + +
Yersinia kristensenii subsp. kristensenii Proteobacteria Rare neg + d(w) + neg neg neg neg +
Yersinia kristensenii subsp. rochesterensis Proteobacteria Rare neg + neg + neg neg neg +
Yersinia massiliensis Proteobacteria Rare neg + d + neg d(neg) + +
Yersinia mollaretii Proteobacteria Rare neg + d + neg neg + +
Yersinia occitanica Proteobacteria Rare neg + + d + neg neg neg neg + neg
Yersinia pestis Proteobacteria Non neg neg neg d d neg neg +
Yersinia proxima Proteobacteria Rare neg + + + + neg neg neg + + neg
Yersinia pseudotuberculosis Proteobacteria Unlikely neg neg neg d neg + neg d +
Yersinia rohdei Proteobacteria Rare neg neg neg neg d d + +
Yersinia vastinensis Proteobacteria Rare neg + + + + neg neg neg + + neg
Yokenella regensburgei Proteobacteria Rare neg + + neg + neg + neg neg + neg
Yonghaparkia alkaliphila Actinobacteria Non +
Zunongwangia profunda Bacteroidetes Non neg neg +

Click on table headings to sort. Table abbreviations: Cell - cellubiose; Gent - gentiobiose; Lact - lactose; Malt - maltose; Melz - melezitose; Melb - melibiose; Raff - raffinose; Sucr - sucrose; Treh - trehalose; Tura - D-turanose;

Polysaccharides
Bacteria Phylum Coloniser Gram Amyg Cell Dext Aesc Glyg Inul Star Xyln
Abiotrophia defectiva Firmicutes Minor + neg neg neg neg neg
Absiella argi Firmicutes Rare +
Absiella innocuum Firmicutes Moderate
Absiella tortuosum Firmicutes Rare + neg neg neg neg neg
Acetanaerobacterium elongatum Firmicutes Rare + neg neg + neg
Acetatifactor muris Firmicutes Rare +
Acetitomaculum ruminis Firmicutes Rare +
Acetivibrio cellulolyticus Firmicutes Rare neg neg + neg neg neg
Acetivibrio clariflavus Firmicutes Unlikely vr
Acetivibrio ethanolgignens Firmicutes Minor neg w
Acetivibrio saccincola Firmicutes Unlikely +
Acetivibrio thermocellus Firmicutes Unlikely neg +
Acetoanaerobium sticklandii Firmicutes Rare +
Acetobacter pasteurianus Proteobacteria Unlikely neg
Acetobacterium woodii Firmicutes Rare +
Acetomicrobium hydrogeniformans Synergistetes Unlikely neg
Achromobacter denitrificans Proteobacteria Unlikely neg neg
Achromobacter insuavis Proteobacteria Unlikely neg
Achromobacter spanius Proteobacteria Unlikely neg
Achromobacter xylosoxidans Proteobacteria Rare neg neg
Acidaminococcus fermentans Firmicutes Widespread neg neg neg
Acidaminococcus intestini Firmicutes Moderate neg
Acidaminococcus massiliensis Firmicutes Rare neg
Acidaminococcus provencensis Firmicutes Rare neg neg neg neg neg neg
Acidaminococcus timonensis Firmicutes Rare neg
Acidipropionibacterium acidipropionici Actinobacteria Rare + + + neg +
Acidipropionibacterium jensenii Actinobacteria Rare + d(neg) + neg vr
Acidisarcina polymorpha Acidobacteria Rare neg neg
Acidovorax facilis Proteobacteria Rare neg
Acidovorax sp. strain KKS102 Proteobacteria Rare neg
Acidovorax temperans Proteobacteria Rare neg
Acidovorax wautersii Proteobacteria Rare neg
Acinetobacter baumannii Proteobacteria Unlikely neg neg
Acinetobacter bereziniae Proteobacteria Unlikely neg
Acinetobacter calcoaceticus Proteobacteria Rare neg neg
Acinetobacter guillouiae Proteobacteria Rare neg
Acinetobacter haemolyticus Proteobacteria Unlikely neg
Acinetobacter idrijaensis Proteobacteria Rare
Acinetobacter johnsonii Proteobacteria Rare neg
Acinetobacter junii Proteobacteria Rare neg
Acinetobacter lwoffii Proteobacteria Unlikely neg neg
Acinetobacter parvus Proteobacteria Unlikely neg
Acinetobacter pittii Proteobacteria Unlikely neg
Acinetobacter radioresistens Proteobacteria Rare neg
Acinetobacter schindleri Proteobacteria Unlikely neg
Acinetobacter septicus Proteobacteria Unlikely neg
Acinetobacter towneri Proteobacteria Unlikely neg
Acinetobacter ursingii Proteobacteria Unlikely neg
Acinetobacter variabilis Proteobacteria Unlikely neg
Actinobacillus capsulatus Proteobacteria Rare neg d(+) d(+) neg neg
Actinobacillus minor Proteobacteria Unlikely neg neg neg
Actinobacillus pleuropneumoniae Proteobacteria Rare neg neg neg neg
Actinobacillus succinogenes Proteobacteria Rare neg + + neg neg
Actinobacillus ureae Proteobacteria Non neg neg
Actinobaculum massiliense Actinobacteria Minor + neg neg
Actinomyces bouchesdurhonensis Actinobacteria Unlikely +
Actinomyces canis Actinobacteria Non + neg +
Actinomyces dentalis Actinobacteria Non + neg
Actinomyces georgiae Actinobacteria Non + neg w +
Actinomyces gerencseriae Actinobacteria Unlikely + d(+) d neg d
Actinomyces graevenitzii Actinobacteria Minor + neg vr neg neg
Actinomyces ihuae Actinobacteria Rare +
Actinomyces israelii Actinobacteria Non +
Actinomyces johnsonii Actinobacteria Rare + + d
Actinomyces marseillensis Actinobacteria Rare +
Actinomyces massiliensis Actinobacteria Rare + neg neg neg neg neg
Actinomyces mediterranea Actinobacteria Rare +
Actinomyces minihominis Actinobacteria Rare +
Actinomyces naeslundii Actinobacteria Minor + neg neg neg neg
Actinomyces oris Actinobacteria Rare + vr d
Actinomyces pacaensis Actinobacteria Rare +
Actinomyces polynesiensis Actinobacteria Rare + neg
Actinomyces provencensis Actinobacteria Rare +
Actinomyces sp. ph3 Actinobacteria Rare +
Actinomyces timonensis Actinobacteria Rare + neg + w neg neg
Actinomyces urogenitalis Actinobacteria Rare + neg neg
Actinomyces viscosus Actinobacteria Minor + neg neg + neg
Actinosynnema mirum Actinobacteria Non + + + neg +
Actinotignum schaalii Actinobacteria Rare + neg d
Acutalibacter muris Firmicutes Rare +
Acutalibacter timonensis Firmicutes Minor
Adhaeribacter aquaticus Bacteroidetes Unlikely neg
Adlercreutzia caecimuris Actinobacteria Rare +
Adlercreutzia equolifaciens Actinobacteria Moderate +
Adlercreutzia equolifaciens subsp. celatus Actinobacteria Rare + neg neg neg neg neg
Adlercreutzia hattorii Actinobacteria Rare +
Adlercreutzia mucosicola Actinobacteria Rare +
Adlercreutzia rubneri Actinobacteria Rare +
Aeribacillus pallidus Firmicutes Unlikely + + +
Aerococcus vaginalis Firmicutes Non + neg neg neg neg neg
Aerococcus viridans Firmicutes Rare + neg neg neg neg neg
Aeromicrobium massiliense Actinobacteria Rare +
Aeromicrobium tamlense Actinobacteria Rare +
Aeromonas allosaccharophila Proteobacteria Rare neg +
Aeromonas bestiarum Proteobacteria Rare neg neg
Aeromonas caviae Proteobacteria Unlikely neg neg +
Aeromonas dhakensis Proteobacteria Rare neg neg + neg
Aeromonas encheleia Proteobacteria Unlikely neg neg
Aeromonas enteropelogenes Proteobacteria Rare neg
Aeromonas eucrenophila Proteobacteria Non neg neg
Aeromonas hydrophila Proteobacteria Unlikely neg
Aeromonas hydrophila subsp. hydrophila Proteobacteria Unlikely neg
Aeromonas jandaei Proteobacteria Rare neg neg
Aeromonas media Proteobacteria Rare neg +
Aeromonas popoffii Proteobacteria Unlikely neg
Aeromonas salmonicida Proteobacteria Unlikely neg neg + + + neg +
Aeromonas schubertii Proteobacteria Non neg
Aeromonas sobria Proteobacteria Rare neg
Aeromonas taiwanensis Proteobacteria Non neg + neg
Aeromonas tecta Proteobacteria Rare neg
Aeromonas trota Proteobacteria Rare neg +
Aeromonas veronii Proteobacteria Rare neg
Aestuariimicrobium kwangyangense Actinobacteria Rare +
Afipia birgiae Proteobacteria Unlikely neg
Afipia broomeae Proteobacteria Rare neg
Afipia lausannensis Proteobacteria Unlikely neg
Africanella massiliensis Firmicutes Rare +
Agathobacter ruminis Firmicutes Rare + + + +
Agathobaculum butyriciproducens Firmicutes Moderate +
Agathobaculum desmolans Firmicutes Minor + neg neg neg neg
Aggregatibacter actinomycetemcomitans Proteobacteria Rare neg
Aggregatibacter aphrophilus Proteobacteria Minor neg neg neg neg neg neg
Aggregatibacter segnis Proteobacteria Minor neg neg neg
Agrilactobacillus composti Firmicutes Unlikely + neg
Agrobacterium radiobacter Proteobacteria Unlikely neg
Agrobacterium rhizogenes Proteobacteria Unlikely neg
Agrobacterium tumefaciens Proteobacteria Unlikely neg
Agrococcus casei Actinobacteria Rare +
Agrococcus jejuensis Actinobacteria Rare + neg
Agrococcus jenensis Actinobacteria Rare + w neg
Agrococcus terreus Actinobacteria Unlikely +
Akkermansia glycaniphila Verrucomicrobia Rare neg
Akkermansia muciniphila Verrucomicrobia Widespread neg
Alcaligenes faecalis Proteobacteria Rare neg neg
Alcaligenes faecalis subsp. faecalis Proteobacteria Unlikely neg neg
Aliagarivorans marinus Proteobacteria Rare neg
Aliarcobacter butzleri Proteobacteria Rare neg
Aliarcobacter cryaerophilus Proteobacteria Rare neg
Aliarcobacter skirrowii Proteobacteria Rare neg
Alicyclobacillus acidocaldarius Firmicutes Rare + neg
Aliiruegeria sabulilitoris Proteobacteria Unlikely neg
Alistipes communis Bacteroidetes Rare neg
Alistipes dispar Bacteroidetes Rare neg
Alistipes finegoldii Bacteroidetes Moderate neg
Alistipes ihumii Bacteroidetes Moderate neg
Alistipes indistinctus Bacteroidetes Moderate neg
Alistipes inops Bacteroidetes Rare neg
Alistipes marseilloanorexicus Bacteroidetes Rare neg
Alistipes massiliensis Bacteroidetes Rare neg
Alistipes megaguti Bacteroidetes Rare neg + + neg neg w
Alistipes montrealensis Bacteroidetes Rare neg
Alistipes obesi Bacteroidetes Moderate neg
Alistipes onderdonkii Bacteroidetes Moderate neg
Alistipes onderdonkii subsp. vulgaris Bacteroidetes Rare neg
Alistipes provencensis Bacteroidetes Rare neg neg + neg neg neg
Alistipes putredinis Bacteroidetes Widespread neg
Alistipes senegalensis Bacteroidetes Moderate neg
Alistipes shahii Bacteroidetes Widespread neg
Alistipes timonensis Bacteroidetes Moderate neg
Alkalibacillus halophilus Firmicutes Unlikely +
Alkalihalobacillus alcalophilus Firmicutes Unlikely +
Alkalihalobacillus gibsonii Firmicutes Rare + neg
Alkalihalobacillus halodurans Firmicutes Rare + neg neg neg +
Alkalihalobacillus oshimensis Firmicutes Unlikely +
Alkaliphilus metalliredigens Firmicutes Rare +
Alkaliphilus oremlandii Firmicutes Non +
Alkaliphilus transvaalensis Firmicutes Non +
Alkanindiges illinoisensis Proteobacteria Non vr
Allisonella histaminiformans Firmicutes Minor neg
Allobaculum fili Firmicutes Rare +
Allobaculum mucilyticum Firmicutes Rare +
Alloprevotella rava Bacteroidetes Rare neg
Alloprevotella tannerae Bacteroidetes Minor neg neg d(+) neg + neg +
Alloscardovia omnicolens Actinobacteria Minor +
Alteracholeplasma palmae Tenericutes Rare unk
Alterileibacterium massiliense Firmicutes Rare neg
Amaricoccus kaplicensis Proteobacteria Unlikely neg
Amedibacillus dolichus Firmicutes Minor + neg neg neg neg
Amedibacterium intestinale Firmicutes Rare +
Aminipila butyrica Firmicutes Rare +
Aminipila terrae Firmicutes Rare +
Aminomonas paucivorans Synergistetes Rare neg
Ammonifex degensii Firmicutes Non neg
Amycolatopsis alba Actinobacteria Rare + neg neg neg neg
Amycolatopsis mediterranei Actinobacteria Rare + +
Amycolatopsis thailandensis Actinobacteria Rare +
Amycolatopsis vancoresmycina Actinobacteria Unlikely +
Anaerobiospirillum succiniciproducens Proteobacteria Rare neg neg +
Anaerobiospirillum thomasii Proteobacteria Rare neg neg
Anaerobutyricum hallii Firmicutes Widespread + neg neg neg neg neg
Anaerobutyricum soehngenii Firmicutes Rare +
Anaerococcus hydrogenalis Firmicutes Rare + neg neg
Anaerococcus jeddahensis Firmicutes Rare +
Anaerococcus lactolyticus Firmicutes Rare +
Anaerococcus marasmi Firmicutes Rare + neg neg neg neg neg
Anaerococcus mediterraneensis Firmicutes Rare +
Anaerococcus murdochii Firmicutes Rare +
Anaerococcus obesiensis Firmicutes Rare +
Anaerococcus octavius Firmicutes Rare + neg neg
Anaerococcus prevotii Firmicutes Minor +
Anaerococcus provencensis Firmicutes Rare +
Anaerococcus rubeinfantis Firmicutes Rare + neg neg neg neg
Anaerococcus senegalensis Firmicutes Rare +
Anaerococcus tetradius Firmicutes Rare + neg
Anaerococcus vaginalis Firmicutes Minor +
Anaerocolumna aminovalerica Firmicutes Rare + neg neg neg
Anaerocolumna cellulosilytica Firmicutes Rare +
Anaerocolumna chitinilytica Firmicutes Rare + +
Anaerocolumna sedimenticola Firmicutes Rare +
Anaerocolumna xylanovorans Firmicutes Rare +
Anaerofilum pentosovorans Firmicutes Rare +
Anaerofustis stercorihominis Firmicutes Minor +
Anaeroglobus geminatus Firmicutes Minor neg neg neg
Anaeromassilibacillus senegalensis Firmicutes Rare neg
Anaerorhabdus furcosa Firmicutes Rare neg
Anaerosalibacter bizertensis Firmicutes Rare +
Anaerosalibacter massiliensis Firmicutes Rare + +
Anaerosphaera massiliensis Firmicutes Rare + neg + neg neg
Anaerospora hongkongensis Firmicutes Rare neg
Anaerostipes butyraticus Firmicutes Rare +
Anaerostipes caccae Firmicutes Moderate + neg neg neg +
Anaerostipes coli Firmicutes Rare +
Anaerostipes hadrus Firmicutes Moderate + neg neg neg + neg
Anaerostipes hominis Firmicutes Rare vr
Anaerostipes rhamnosivorans Firmicutes Rare vr
Anaerostipes rhamnosus Firmicutes Rare +
Anaerotignum faecicola Firmicutes Rare + neg
Anaerotignum lactatifermentans Firmicutes Moderate neg
Anaerotignum neopropionicum Firmicutes Rare neg
Anaerotignum propionicum Firmicutes Rare + neg neg neg
Anaerotruncus colihominis Firmicutes Moderate +
Anaerotruncus massiliensis Firmicutes Rare neg neg + + + +
Anaerotruncus rubiinfantis Firmicutes Moderate +
Anaerovorax odorimutans Firmicutes Rare vr
Ancylobacter polymorphus Proteobacteria Rare neg neg + neg
Aneurinibacillus aneurinilyticus Firmicutes Rare +
Aneurinibacillus migulanus Firmicutes Rare +
Angelakisella massiliensis Firmicutes Rare neg
Anoxybacillus flavithermus Firmicutes Non +
Anoxybacillus gonensis Firmicutes Unlikely +
Anoxynatronum sibiricum Firmicutes Rare +
Anseongella ginsenosidimutans Bacteroidetes Unlikely neg
Aquabacterium citratiphilum Proteobacteria Rare neg
Aquabacterium commune Proteobacteria Rare neg
Aquabacterium parvum Proteobacteria Rare neg
Aquamicrobium lusatiense Proteobacteria Unlikely neg
Aquincola tertiaricarbonis Proteobacteria Non neg
Arabia massiliensis Actinobacteria Rare neg
Arachnia propionica Actinobacteria Rare +
Arcanobacterium haemolyticum Actinobacteria Rare + neg neg
Arthrobacter agilis Actinobacteria Non +
Arthrobacter castelli Actinobacteria Rare + neg
Arthrobacter citreus Actinobacteria Unlikely vr
Arthrobacter gandavensis Actinobacteria Unlikely + neg w neg neg
Arthrobacter globiformis Actinobacteria Unlikely +
Arthrobacter koreensis Actinobacteria Unlikely +
Arthrobacter luteolus Actinobacteria Unlikely +
Arthrobacter parietis Actinobacteria Non + neg
Arthrobacter pigmenti Actinobacteria Non + neg
Arthrobacter russicus Actinobacteria Unlikely +
Asaccharospora irregularis Firmicutes Rare + neg neg neg
Asticcacaulis biprosthecium Proteobacteria Unlikely neg
Asticcacaulis excentricus Proteobacteria Unlikely neg
Atlantibacter hermannii Proteobacteria Rare neg +
Atopobium minutum Actinobacteria Minor + neg neg neg neg
Atopostipes suicloacalis Firmicutes Unlikely +
Aureimonas altamirensis Proteobacteria Unlikely neg
Aureimonas ureilytica Proteobacteria Unlikely neg
Averyella dalhousiensis Proteobacteria Rare neg
Azoarcus pumilus Proteobacteria Rare neg
Azospirillum lipoferum Proteobacteria Rare neg neg neg neg neg
Azotobacter vinelandii Proteobacteria Non neg
Bacilliculturomica massiliensis Firmicutes Rare +
Bacillus altitudinis Firmicutes Rare +
Bacillus amyloliquefaciens Firmicutes Rare + neg + neg +
Bacillus andreraoultii Firmicutes Rare + neg + neg +
Bacillus aneurinolyticus Firmicutes Rare + neg
Bacillus anthracis Firmicutes Non + neg + neg +
Bacillus atrophaeus Firmicutes Rare + vr neg neg neg
Bacillus badius DSM 23T Firmicutes Rare + neg neg neg neg
Bacillus badius DSM 5610 Firmicutes Rare + neg neg neg neg
Bacillus baekryungensis Firmicutes Non +
Bacillus benzoevorans Firmicutes Rare + neg neg
Bacillus caccae Firmicutes Rare +
Bacillus cereus Firmicutes Minor + vr neg d neg +
Bacillus circulans Firmicutes Rare + + + + +
Bacillus clausii Firmicutes Rare + + neg neg +
Bacillus cytotoxicus Firmicutes Rare + w + neg neg neg
Bacillus dakarensis Firmicutes Rare + neg + neg neg neg
Bacillus endophyticus Firmicutes Unlikely + neg
Bacillus firmus Firmicutes Rare + neg vr vr +
Bacillus fordii Firmicutes Rare neg neg neg neg neg
Bacillus halotolerans Firmicutes Rare + + + + neg +
Bacillus idriensis Firmicutes Rare + neg vr vr +
Bacillus infantis Firmicutes Rare +
Bacillus kwashiorkori Firmicutes Rare + + neg neg +
Bacillus licheniformis Firmicutes Minor + + + d(+) +
Bacillus marasmi Firmicutes Rare + + + + +
Bacillus massilioanorexius Firmicutes Rare + w
Bacillus massiliogabonensis Firmicutes Unlikely neg + + + + +
Bacillus massilionigeriensis Firmicutes Rare +
Bacillus mediterraneensis Firmicutes Rare + neg neg neg neg
Bacillus methanolicus Firmicutes Non + neg neg neg
Bacillus mojavensis Firmicutes Rare +
Bacillus mycoides Firmicutes Rare + neg + + neg +
Bacillus niameyensis Firmicutes Rare + neg + neg neg +
Bacillus pakistanensis Firmicutes Rare + + + + neg neg
Bacillus phocaeensis Firmicutes Rare + neg neg neg +
Bacillus pseudofirmus Firmicutes Rare +
Bacillus pseudomycoides Firmicutes Unlikely +
Bacillus pumilus Firmicutes Rare + + neg neg neg
Bacillus rubiinfantis Firmicutes Rare + neg + neg neg neg
Bacillus sinesaloumensis Firmicutes Unlikely + neg + neg neg neg
Bacillus siralis Firmicutes Rare + vr neg neg vr
Bacillus smithii Firmicutes Rare + neg d(+) neg neg neg
Bacillus sonorensis Firmicutes Rare +
Bacillus subtilis Firmicutes Minor + + + d(+) +
Bacillus testis Firmicutes Rare + + +
Bacillus thuringiensis Firmicutes Rare + neg + neg +
Bacillus timonensis Firmicutes Rare neg w
Bacillus tuaregi Firmicutes Rare + neg neg neg neg neg
Bacillus vallismortis Firmicutes Rare + neg neg neg neg
Bacillus velezensis Variant polyfermenticus Firmicutes Rare + + + + neg
Bacillus wiedmannii Firmicutes Rare + d(neg) + + neg +
Bacteroides acidifaciens Bacteroidetes Moderate neg
Bacteroides bouchesdurhonensis Bacteroidetes Moderate neg + + +
Bacteroides caccae Bacteroidetes Widespread neg + w(+) + d(+) neg
Bacteroides caecimuris Bacteroidetes Rare neg
Bacteroides cellulosilyticus Bacteroidetes Moderate neg + w + w
Bacteroides clarus Bacteroidetes Moderate neg
Bacteroides congonensis Bacteroidetes Moderate neg + + neg +
Bacteroides coprosuis Bacteroidetes Rare neg
Bacteroides cutis Bacteroidetes Moderate neg
Bacteroides eggerthii Bacteroidetes Widespread neg w + w(neg) neg + +
Bacteroides faecalis Bacteroidetes Rare neg +
Bacteroides faecichinchillae Bacteroidetes Rare neg
Bacteroides faecis Bacteroidetes Moderate neg
Bacteroides finegoldii Bacteroidetes Widespread neg
Bacteroides fluxus Bacteroidetes Moderate neg
Bacteroides fragilis Bacteroidetes Widespread neg + + + neg
Bacteroides galacturonicus Bacteroidetes Rare neg neg neg neg neg
Bacteroides gallinarum Bacteroidetes Moderate neg
Bacteroides graminisolvens Bacteroidetes Rare neg + +
Bacteroides helcogenes Bacteroidetes Rare neg + + neg + +
Bacteroides heparinolyticus Bacteroidetes Rare neg + +
Bacteroides ihuae Bacteroidetes Rare neg + +
Bacteroides ilei Bacteroidetes Minor neg + + + neg neg
Bacteroides intestinalis Bacteroidetes Widespread neg
Bacteroides luhongzhouii Bacteroidetes Rare neg
Bacteroides luti Bacteroidetes Rare neg + +
Bacteroides mediterraneensis Bacteroidetes Moderate neg + + +
Bacteroides ndongoniae Bacteroidetes Minor neg
Bacteroides neonati Bacteroidetes Minor neg
Bacteroides nordii Bacteroidetes Moderate neg neg
Bacteroides oleiciplenus Bacteroidetes Moderate neg
Bacteroides ovatus Bacteroidetes Widespread neg w + + + +
Bacteroides pectinophilus Bacteroidetes Moderate neg neg neg neg neg
Bacteroides propionicifaciens Bacteroidetes Rare neg + w + +
Bacteroides pyogenes Bacteroidetes Minor neg d d d neg
Bacteroides reticulotermitis Bacteroidetes Rare neg + +
Bacteroides salyersiae Bacteroidetes Moderate neg neg
Bacteroides sp. Strain D8 Bacteroidetes Rare neg
Bacteroides stercorirosoris Bacteroidetes Moderate neg
Bacteroides stercoris Bacteroidetes Widespread neg neg + d + + + d
Bacteroides thetaiotaomicron Bacteroidetes Widespread neg + + + + +
Bacteroides timonensis Bacteroidetes Rare neg neg neg neg neg
Bacteroides togonis Bacteroidetes Minor neg + +
Bacteroides uniformis Bacteroidetes Widespread neg + + + +
Bacteroides xylanisolvens Bacteroidetes Widespread neg neg neg + neg +
Bacteroides zhangwenhongi Bacteroidetes Rare neg
Bacteroides zoogleoformans Bacteroidetes Rare neg d + neg d(neg) d(neg) + neg
Bariatricus massiliensis Firmicutes Minor +
Barnesiella intestinihominis Bacteroidetes Moderate neg
Barnesiella viscericola Bacteroidetes Rare neg
Bartonella vinsonii Proteobacteria Non neg
Bavariicoccus seileri Firmicutes Rare +
Bdellovibrio bacteriovorus Bdellovibrionota Moderate neg
Beduinella massiliensis Firmicutes Rare neg
Beduini massiliensis Firmicutes Rare neg +
Beduinibacterium massiliense Firmicutes Rare +
Belnapia soli Proteobacteria Rare neg neg neg neg neg neg
Berryella intestinalis Actinobacteria Rare +
Bhargavaea beijingensis Firmicutes Rare + neg neg
Bhargavaea cecembensis Firmicutes Non +
Bifidobacterium adolescentis Actinobacteria Widespread + + neg d d d(+) d(+)
Bifidobacterium aerophilum Actinobacteria Rare + neg neg neg neg neg
Bifidobacterium angulatum Actinobacteria Moderate + vr neg neg vr +
Bifidobacterium animalis Actinobacteria Moderate + neg + neg neg +
Bifidobacterium animalis subsp. lactis Actinobacteria Rare + + + neg neg neg
Bifidobacterium asteroides Actinobacteria Rare + neg neg d(neg)
Bifidobacterium avesanii Actinobacteria Rare + neg neg neg neg neg
Bifidobacterium biavatii Actinobacteria Rare + w neg + neg +
Bifidobacterium bifidum Actinobacteria Widespread + neg neg neg neg neg
Bifidobacterium boum Actinobacteria Rare + neg + + +
Bifidobacterium breve Actinobacteria Widespread + + neg + neg + neg
Bifidobacterium callitrichidarum Actinobacteria Rare + w + neg neg neg
Bifidobacterium catenulatum Actinobacteria Moderate + + neg neg neg d
Bifidobacterium catenulatum subsp. kashiwanohense Actinobacteria Rare + neg neg
Bifidobacterium choerinum Actinobacteria Rare + neg + neg
Bifidobacterium coryneforme Actinobacteria Rare + vr d(neg) neg neg
Bifidobacterium cuniculi Actinobacteria Rare + neg +
Bifidobacterium dentium Actinobacteria Moderate + + neg neg +
Bifidobacterium eulemuris Actinobacteria Rare + + neg
Bifidobacterium faecale Actinobacteria Rare + + + + + +
Bifidobacterium gallicum Actinobacteria Rare + neg + neg +
Bifidobacterium imperatoris Actinobacteria Rare + + neg neg
Bifidobacterium indicum Actinobacteria Rare + neg neg neg
Bifidobacterium lemurum Actinobacteria Rare + w + + neg neg
Bifidobacterium longum subsp. infantis Actinobacteria Moderate + neg d neg neg d d d(+)
Bifidobacterium longum subsp. longum Actinobacteria Widespread + neg neg neg neg d(neg) neg neg
Bifidobacterium longum subsp. suis Actinobacteria Rare + neg neg neg
Bifidobacterium merycicum Actinobacteria Rare + + neg +
Bifidobacterium minimum Actinobacteria Rare + neg neg + +
Bifidobacterium mongoliense Actinobacteria Unlikely + vr + neg w
Bifidobacterium moukalabense Actinobacteria Rare +
Bifidobacterium myosotis Actinobacteria Rare + d neg neg neg
Bifidobacterium pseudocatenulatum Actinobacteria Widespread + + neg + d(neg) +
Bifidobacterium pseudolongum Actinobacteria Minor + neg + neg +
Bifidobacterium pseudolongum subsp. globosum Actinobacteria Rare + neg neg + +
Bifidobacterium pullorum subsp. gallinarum Actinobacteria Rare + + + neg + neg
Bifidobacterium pullorum subsp. saeculare Actinobacteria Rare + neg +
Bifidobacterium ramosum Actinobacteria Rare + neg neg neg neg neg
Bifidobacterium reuteri Actinobacteria Rare + w + neg +
Bifidobacterium ruminantium Actinobacteria Minor + neg + + neg +
Bifidobacterium saguini Actinobacteria Rare + + neg neg neg neg
Bifidobacterium scardovii Actinobacteria Minor + + neg neg neg +
Bifidobacterium stellenboschense Actinobacteria Rare + + neg neg neg
Bifidobacterium subtile Actinobacteria Rare + neg neg d(+) d d(+) neg
Bifidobacterium thermacidophilum Actinobacteria Rare + neg vr
Bifidobacterium thermophilum Actinobacteria Rare + neg d neg w +
Bifissio spartinae Bacteroidetes Rare neg
Bilophila wadsworthia Desulfobacterota Widespread neg
Bittarella massiliensis Firmicutes Moderate neg
Blastococcus massiliensis Actinobacteria Rare +
Blastomonas natatoria Proteobacteria Unlikely neg
Blautia brookingsii Firmicutes Rare +
Blautia caecimuris Firmicutes Rare +
Blautia coccoides Firmicutes Minor + + neg w neg neg w
Blautia faecicola Firmicutes Rare + + neg neg neg
Blautia faecis Firmicutes Rare + neg + neg neg
Blautia glucerasea Firmicutes Rare + + +
Blautia hansenii Firmicutes Moderate + d(neg) neg
Blautia hominis Firmicutes Rare + + + neg neg +
Blautia hydrogenotrophica Firmicutes Moderate +
Blautia intestinalis Firmicutes Rare +
Blautia liquoris Firmicutes Rare +
Blautia luti Firmicutes Minor + d neg + +
Blautia marasmi Firmicutes Rare +
Blautia massiliensis Firmicutes Moderate neg + + + +
Blautia obeum Firmicutes Widespread + d(neg) d neg
Blautia phocaeensis Firmicutes Rare +
Blautia producta Firmicutes Widespread + neg + neg neg neg
Blautia provencensis Firmicutes Rare +
Blautia pseudococcoides Firmicutes Rare + + neg w neg neg w
Blautia schinkii Firmicutes Rare +
Blautia stercoris Firmicutes Minor + neg + neg
Blautia wexlerae Firmicutes Moderate + +
Bordetella bronchiseptica Proteobacteria Non neg
Bordetella hinzii Proteobacteria Unlikely neg
Bordetella trematum Proteobacteria Non neg
Bosea massiliensis Proteobacteria Rare neg
Brachybacterium conglomeratum Actinobacteria Rare +
Brachybacterium faecium Actinobacteria Unlikely +
Brachybacterium ginsengisoli Actinobacteria Unlikely +
Brachybacterium massiliense Actinobacteria Rare + neg + + + +
Brachybacterium muris Actinobacteria Rare +
Brachybacterium paraconglomeratum Actinobacteria Rare + neg
Brachymonas chironomi Proteobacteria Unlikely neg
Brachyspira aalborgi Spirochaetes Rare neg
Brachyspira hyodysenteriae Spirochaetes Rare neg
Brachyspira pilosicoli Spirochaetes Unlikely neg
Bradyrhizobium denitrificans Proteobacteria Rare neg
Bradyrhizobium elkanii Proteobacteria Rare neg
Bradyrhizobium ganzhouense Proteobacteria Unlikely neg
Bradyrhizobium icense Proteobacteria Unlikely neg
Bradyrhizobium japonicum Proteobacteria Rare neg
Bradyrhizobium neotropicale Proteobacteria Rare neg
Brassicibacter mesophilus Firmicutes Rare neg
Brenneria populi Li et al. 2015 Proteobacteria Rare neg + + neg neg
Brevibacillus agri Firmicutes Unlikely + neg neg neg neg
Brevibacillus borstelensis Firmicutes Rare + neg neg neg neg
Brevibacillus brevis Firmicutes Rare vr +
Brevibacillus centrosporus Firmicutes Unlikely + neg neg neg neg
Brevibacillus choshinensis Firmicutes Rare + neg
Brevibacillus formosus Firmicutes Unlikely +
Brevibacillus laterosporus Firmicutes Rare vr
Brevibacillus massiliensis Firmicutes Rare + neg neg neg neg neg neg
Brevibacillus parabrevis Firmicutes Unlikely vr
Brevibacillus thermoruber Firmicutes Non +
Brevibacterium aurantiacum Actinobacteria Unlikely + neg
Brevibacterium casei Actinobacteria Rare + neg neg neg neg
Brevibacterium celere Actinobacteria Rare +
Brevibacterium epidermidis Actinobacteria Rare + neg
Brevibacterium ihuae Actinobacteria Rare +
Brevibacterium iodinum Actinobacteria Unlikely vr neg neg neg neg
Brevibacterium linens Actinobacteria Unlikely + neg neg neg neg neg
Brevibacterium luteolum Actinobacteria Rare +
Brevibacterium mcbrellneri Actinobacteria Unlikely +
Brevibacterium otitidis Actinobacteria Non +
Brevibacterium paucivorans Actinobacteria Rare +
Brevibacterium pityocampae Actinobacteria Rare + neg neg
Brevibacterium ravenspurgense Actinobacteria Rare + neg neg neg neg
Brevibacterium samyangense Actinobacteria Rare + neg
Brevibacterium sanguinis Actinobacteria Rare +
Brevibacterium senegalense Actinobacteria Rare + neg
Brevundimonas aurantiaca Proteobacteria Rare neg
Brevundimonas bacteroides Proteobacteria Rare neg
Brevundimonas bullata Proteobacteria Rare neg neg
Brevundimonas diminuta Proteobacteria Rare neg neg
Brevundimonas intermedia Proteobacteria Rare neg
Brevundimonas nasdae Proteobacteria Rare neg
Brevundimonas terrae Proteobacteria Rare neg neg
Brevundimonas vesicularis Proteobacteria Rare neg neg
Brochothrix thermosphacta Firmicutes Unlikely + + neg neg vr neg
Brucella anthropi Proteobacteria Unlikely neg
Brucella cytisi Proteobacteria Rare neg
Brucella melitensis Proteobacteria Non neg
Brucella tritici Proteobacteria Unlikely neg neg
Buchnera aphidicola Proteobacteria Non neg
Bulleidia extructa Firmicutes Rare +
Burkholderia arboris Proteobacteria Rare neg
Burkholderia cepacia Proteobacteria Rare neg neg
Burkholderia gladioli Proteobacteria Unlikely neg +
Burkholderia mallei Proteobacteria Unlikely neg
Burkholderia multivorans Proteobacteria Rare neg
Burkholderia pseudomallei Proteobacteria Unlikely neg
Burkholderia pyrrocinia Proteobacteria Unlikely neg neg neg
Burkholderia vietnamiensis Proteobacteria Rare neg
Buttiauxella agrestis Proteobacteria Rare neg
Butyribacter intestini Firmicutes Rare + neg neg neg +
Butyricicoccus faecihominis Firmicutes Rare +
Butyricicoccus porcorum Firmicutes Rare + neg
Butyricicoccus pullicaecorum Firmicutes Minor +
Butyricimonas faecalis Bacteroidetes Rare neg neg neg neg neg
Butyricimonas faecihominis Bacteroidetes Rare neg neg neg neg neg
Butyricimonas paravirosa Bacteroidetes Rare neg neg neg neg neg
Butyricimonas phoceensis Bacteroidetes Rare neg
Butyricimonas synergistica Bacteroidetes Minor neg neg neg neg neg
Butyricimonas virosa Bacteroidetes Moderate neg neg neg neg neg
Butyrivibrio crossotus Firmicutes Widespread neg neg neg w neg w
Butyrivibrio fibrisolvens Firmicutes Minor neg neg d + d d
Butyrivibrio hungatei Firmicutes Unlikely neg
Butyrivibrio proteoclasticus Firmicutes Rare +
Caballeronia novacaledonica Proteobacteria Rare neg
Caecibacter massiliensis Firmicutes Rare
Caldibacillus thermoamylovorans Firmicutes Unlikely + + + neg +
Caldicellulosiruptor diazotrophicus Firmicutes Non +
Caldicoprobacter faecalis Firmicutes Unlikely neg neg neg neg neg
Caloranaerobacter azorensis Firmicutes Non neg neg + +
Campylobacter avium Proteobacteria Non neg
Campylobacter coli Proteobacteria Unlikely neg
Campylobacter concisus Proteobacteria Minor neg
Campylobacter curvus Proteobacteria Rare neg
Campylobacter faecalis Proteobacteria Rare neg
Campylobacter fetus subsp. fetus Proteobacteria Rare neg
Campylobacter gracilis Proteobacteria Minor neg
Campylobacter hominis Proteobacteria Minor neg
Campylobacter hyointestinalis subsp. hyointestinalis Proteobacteria Unlikely neg
Campylobacter jejuni subsp. doylei Proteobacteria Rare neg
Campylobacter jejuni subsp. jejuni Proteobacteria Unlikely neg
Campylobacter lanienae Proteobacteria Rare neg
Campylobacter lari subsp. concheus Proteobacteria Rare neg
Campylobacter lari subsp. lari Proteobacteria Rare neg
Campylobacter mucosalis Proteobacteria Rare neg
Campylobacter peloridis Proteobacteria Rare neg
Campylobacter rectus Proteobacteria Rare neg
Campylobacter showae Proteobacteria Rare neg
Campylobacter sputorum Proteobacteria Non neg
Campylobacter troglodytis Proteobacteria Rare neg
Campylobacter upsaliensis Proteobacteria Rare neg
Campylobacter ureolyticus Proteobacteria Minor neg
Candidatus Babela massiliensis Candidatus Dependentiae Unlikely neg
Candidatus Dorea massiliensis Firmicutes Rare +
Candidatus Stoquefichus massiliensis Firmicutes Rare +
Capnocytophaga canimorsus Bacteroidetes Unlikely neg d(+) d(+) neg d(+)
Capnocytophaga gingivalis Bacteroidetes Non neg neg neg neg
Capnocytophaga granulosa Bacteroidetes Rare neg neg neg neg +
Capnocytophaga leadbetteri Bacteroidetes Rare neg neg neg neg neg
Capnocytophaga ochracea Bacteroidetes Rare neg d(+) neg d(+) d(+) + +
Capnocytophaga sputigena Bacteroidetes Rare neg neg neg + +
Capnocytophaga stomatis Bacteroidetes Unlikely neg +
Caproicibacter fermentans Firmicutes Rare neg
Cardiobacterium hominis Proteobacteria Rare neg neg
Cardiobacterium valvarum Proteobacteria Rare neg
Carnobacterium divergens Firmicutes Non + + neg neg neg
Carnobacterium inhibens Firmicutes Rare + + neg w neg
Carnobacterium maltaromaticum Firmicutes Unlikely + + + neg +
Carnobacterium mobile Firmicutes Non + neg neg + neg
Casaltella massiliensis Firmicutes Rare neg
Catenibacillus scindens Firmicutes Rare + neg neg neg neg neg
Catenibacterium mitsuokai Firmicutes Moderate + neg neg neg neg
Catenulispora acidiphila Actinobacteria Unlikely +
Catonella morbi Firmicutes Rare neg d(neg) d neg d neg neg
Caulobacter vibrioides Proteobacteria Unlikely neg w neg w
Cedecea davisae Proteobacteria Rare neg + vr
Cedecea lapagei Proteobacteria Rare neg
Cedecea neteri Proteobacteria Rare neg
Cellulomonas carbonis Actinobacteria Unlikely +
Cellulomonas composti Actinobacteria Rare + + w +
Cellulomonas denverensis Actinobacteria Rare + neg
Cellulomonas fimi Actinobacteria Rare +
Cellulomonas flavigena Actinobacteria Rare +
Cellulomonas hominis Actinobacteria Rare + neg
Cellulomonas massiliensis Actinobacteria Rare +
Cellulomonas parahominis Actinobacteria Rare +
Cellulomonas timonensis Actinobacteria Rare + neg + + neg +
Cellulosilyticum lentocellum Firmicutes Rare neg
Cellulosilyticum ruminicola Firmicutes Rare neg neg + neg neg +
Cellulosimicrobium cellulans Actinobacteria Rare + +
Centipeda periodontii Firmicutes Rare neg neg neg neg neg neg
Cerasibacillus quisquiliarum Firmicutes Non + neg neg neg
Cetobacterium somerae Fusobacteria Rare neg
Chelatococcus asaccharovorans Proteobacteria Unlikely neg
Chitinophaga agri Bacteroidetes Unlikely neg
Chlamydia trachomatis Chlamydiae Non neg
Chloracidobacterium thermophilum Acidobacteria Non neg
Christensenella hongkongensis Firmicutes Minor +
Christensenella massiliensis Firmicutes Rare neg
Christensenella minuta Firmicutes Minor neg
Christensenella timonensis Firmicutes Minor neg
Chromobacterium violaceum Proteobacteria Unlikely neg + neg d(+)
Chromohalobacter japonicus Proteobacteria Unlikely neg
Chromohalobacter salexigens Proteobacteria Unlikely neg
Chryseobacterium gallinarum Bacteroidetes Unlikely neg
Chryseobacterium gleum Bacteroidetes Unlikely neg
Chryseobacterium hominis Bacteroidetes Rare neg
Chryseobacterium indologenes Bacteroidetes Rare neg + neg
Chryseobacterium oranimense Bacteroidetes Rare neg +
Chryseobacterium taklimakanense Bacteroidetes Rare neg + + +
Chryseobacterium viscerum Bacteroidetes Non neg
Chryseomicrobium amylolyticum Firmicutes Rare + neg
Citrobacter amalonaticus Proteobacteria Rare neg +
Citrobacter braakii Proteobacteria Rare neg neg
Citrobacter europaeus Proteobacteria Rare neg neg neg neg neg neg
Citrobacter farmeri Proteobacteria Minor neg + neg
Citrobacter freundii Proteobacteria Minor neg neg
Citrobacter gillenii Proteobacteria Rare neg +
Citrobacter intermedius Proteobacteria Unlikely neg
Citrobacter koseri Proteobacteria Minor neg + neg
Citrobacter murliniae Proteobacteria Rare neg w
Citrobacter pasteurii Proteobacteria Rare neg neg + +
Citrobacter portucalensis Proteobacteria Rare neg neg neg neg neg neg
Citrobacter rodentium Proteobacteria Rare neg
Citrobacter sedlakii Proteobacteria Rare neg + neg neg
Citrobacter werkmanii Proteobacteria Rare neg neg neg
Citrobacter youngae Proteobacteria Rare neg neg neg neg
Citroniella saccharovorans Firmicutes Rare +
Cloacibacillus evryensis Synergistetes Minor neg
Cloacibacillus porcorum Synergistetes Rare neg
Cloacibacterium normanense Bacteroidetes Rare neg neg
Clostridioides difficile Firmicutes Widespread +
Clostridioides mangenotii Firmicutes Rare +
Clostridium acetobutylicum Firmicutes Rare + vr neg + vr + +
Clostridium amazonense Firmicutes Rare +
Clostridium amazonitimonense Firmicutes Rare +
Clostridium aminobutyricum Firmicutes Rare + w neg w
Clostridium aminophilum Firmicutes Rare +
Clostridium amylolyticum Firmicutes Rare +
Clostridium anorexicamassiliense Firmicutes Rare +
Clostridium argentinense Firmicutes Rare +
Clostridium aurantibutyricum Firmicutes Rare + neg neg +
Clostridium autoethanogenum Firmicutes Rare +
Clostridium baratii Firmicutes Minor + neg neg +
Clostridium beijerinckii Firmicutes Minor +
Clostridium boliviensis Firmicutes Rare + +
Clostridium bornimense Firmicutes Rare vr
Clostridium botulinum Gp I Firmicutes Unlikely +
Clostridium botulinum Gp II Firmicutes Unlikely +
Clostridium botulinum Gp III Firmicutes Unlikely +
Clostridium botulinum Gp IV Firmicutes Unlikely +
Clostridium budayi Firmicutes Rare + neg neg w(+) neg
Clostridium butyricum Firmicutes Widespread +
Clostridium cadaveris Firmicutes Rare +
Clostridium cagae Firmicutes Rare + neg neg neg + neg
Clostridium carboxidivorans Firmicutes Rare +
Clostridium carnis Firmicutes Rare +
Clostridium celatum Firmicutes Minor +
Clostridium cellulosi Firmicutes Unlikely neg + + + + +
Clostridium cellulovorans Firmicutes Rare neg + neg +
Clostridium chartatabidum Firmicutes Rare + neg + neg neg
Clostridium chauvoei Firmicutes Rare +
Clostridium cochlearium Firmicutes Minor +
Clostridium cocleatum Firmicutes Rare + d + neg + neg
Clostridium colicanis Firmicutes Rare neg neg w neg w
Clostridium colinum Firmicutes Rare + neg
Clostridium combesii Firmicutes Rare + neg neg
Clostridium culturomicium Firmicutes Rare + +
Clostridium dakarense Firmicutes Rare +
Clostridium diolis Firmicutes Rare + + w + neg
Clostridium disporicum Firmicutes Minor + + +
Clostridium drakei Firmicutes Unlikely +
Clostridium estertheticum Firmicutes Unlikely + + +
Clostridium fallax Firmicutes Rare +
Clostridium felsineum Firmicutes Rare +
Clostridium fessum Firmicutes Rare +
Clostridium gasigenes Firmicutes Unlikely + neg
Clostridium haemolyticum Firmicutes Rare +
Clostridium herbivorans Firmicutes Rare + neg + + +
Clostridium hylemonae Firmicutes Minor + neg neg neg neg neg
Clostridium ihumii Firmicutes Rare +
Clostridium innocuum Firmicutes Widespread +
Clostridium intestinale Firmicutes Rare + neg
Clostridium isatidis Firmicutes Unlikely + + neg neg +
Clostridium jeddahense Firmicutes Rare +
Clostridium jeddahitimonense Firmicutes Rare + +
Clostridium kluyveri Firmicutes Unlikely vr
Clostridium leptum Firmicutes Widespread +
Clostridium magnum Firmicutes Rare neg
Clostridium malenominatum Firmicutes Rare +
Clostridium manihotivorum Firmicutes Rare + +
Clostridium massiliamazoniense Firmicutes Rare +
Clostridium massiliodielmoense Firmicutes Rare +
Clostridium mediterraneense Firmicutes Rare +
Clostridium merdae Firmicutes Rare +
Clostridium metallolevans Firmicutes Rare + +
Clostridium methoxybenzovorans Firmicutes Rare +
Clostridium methylpentosum Firmicutes Moderate +
Clostridium minihomine Firmicutes Rare +
Clostridium moniliforme Firmicutes Rare + neg neg neg neg neg
Clostridium neonatale Firmicutes Minor +
Clostridium niameyense Firmicutes Rare +
Clostridium nigeriense Firmicutes Rare +
Clostridium nitritogenes Firmicutes Rare + neg neg neg neg
Clostridium novyi A Firmicutes Rare +
Clostridium oceanicum Firmicutes Rare + neg neg neg neg
Clostridium paraputrificum Firmicutes Moderate + neg +
Clostridium pasteurianum Firmicutes Rare +
Clostridium perfringens Firmicutes Widespread +
Clostridium phoceensis Firmicutes Rare neg
Clostridium polyendosporum Firmicutes Rare +
Clostridium polynesiense Firmicutes Rare + + + neg neg
Clostridium polysaccharolyticum Firmicutes Rare neg + neg + +
Clostridium populeti Firmicutes Rare neg + +
Clostridium punense Firmicutes Rare +
Clostridium putrefaciens Firmicutes Minor +
Clostridium rectalis Firmicutes Rare + + neg + neg +
Clostridium roseum Firmicutes Rare + neg neg neg +
Clostridium saccharobutylicum Firmicutes Unlikely +
Clostridium saccharoperbutylacetonicum Firmicutes Rare + + + + + +
Clostridium sardiniense Firmicutes Rare + neg
Clostridium sartagoforme Firmicutes Minor +
Clostridium saudiense Firmicutes Minor +
Clostridium scatologenes Firmicutes Rare +
Clostridium schirmacherense Firmicutes Unlikely +
Clostridium scindens Firmicutes Moderate +
Clostridium senegalense Firmicutes Rare +
Clostridium septicum Firmicutes Rare + neg neg
Clostridium sporogenes Firmicutes Minor +
Clostridium sporosphaeroides Firmicutes Minor +
Clostridium subterminale Firmicutes Rare +
Clostridium sulfidigenes Firmicutes Rare +
Clostridium symbiosum Firmicutes Widespread neg neg neg neg neg neg
Clostridium taeniosporum Firmicutes Unlikely +
Clostridium tertium Firmicutes Moderate + + neg + neg +
Clostridium tetani Firmicutes Unlikely +
Clostridium thermarum Firmicutes Unlikely + +
Clostridium thermobutyricum Firmicutes Rare vr neg
Clostridium thiosulfatireducens Firmicutes Rare +
Clostridium transplantifaecale Firmicutes Rare + + neg + + +
Clostridium tyrobutyricum Firmicutes Rare +
Clostridium vincentii Firmicutes Rare +
Clostridium viride Firmicutes Rare +
Colibacter massiliensis Firmicutes Rare + +
Colidextribacter massiliensis Firmicutes Rare neg
Collinsella aerofaciens Actinobacteria Widespread + d(neg) neg w(neg) neg neg
Collinsella bouchesdurhonensis Actinobacteria Minor + neg neg neg
Collinsella ihumii Actinobacteria Rare +
Collinsella intestinalis Actinobacteria Moderate + neg neg neg neg
Collinsella massiliensis Actinobacteria Rare + neg neg neg neg neg
Collinsella phocaeensis Actinobacteria Rare neg
Collinsella provencensis Actinobacteria Rare +
Collinsella stercoris Actinobacteria Minor + neg neg neg neg
Collinsella tanakaei Actinobacteria Minor +
Collinsella vaginalis Actinobacteria Rare +
Comamonas aquatica Proteobacteria Non neg
Comamonas denitrificans Proteobacteria Rare neg
Comamonas kerstersii Proteobacteria Rare neg
Comamonas koreensis Proteobacteria Unlikely neg
Comamonas terrigena Proteobacteria Unlikely neg
Comamonas testosteroni Proteobacteria Rare neg
Comamonas thiooxydans Proteobacteria Rare neg
Companilactobacillus alimentarius Firmicutes Rare + + neg + neg neg d
Companilactobacillus farciminis Firmicutes Rare + neg + neg neg neg
Companilactobacillus mindensis Firmicutes Unlikely + d +
Companilactobacillus versmoldensis Firmicutes Unlikely + neg neg neg
Conexibacter woesei Actinobacteria Rare +
Congobacterium massiliense Firmicutes Rare +
Coprobacillus cateniformis Firmicutes Moderate + neg neg neg neg
Coprobacter fastidiosus Bacteroidetes Moderate neg neg
Coprobacter secundus Bacteroidetes Moderate neg
Coprobacter secundus subsp. similis Bacteroidetes Rare neg
Coprococcus catus Firmicutes Widespread + neg neg neg neg
Coprococcus comes Firmicutes Widespread + w neg vr
Coprococcus eutactus Firmicutes Widespread + + vr neg +
Coprococcus phoceensis Firmicutes Rare vr neg neg neg neg neg
Coraliomargarita akajimensis Verrucomicrobia Non neg neg neg neg neg
Coriobacterium glomerans Actinobacteria Unlikely + neg neg
Corynebacterium accolens Actinobacteria Rare + neg
Corynebacterium afermentans Actinobacteria Rare + neg neg
Corynebacterium ammoniagenes Actinobacteria Rare + neg neg
Corynebacterium amycolatum Actinobacteria Rare + neg neg neg neg neg
Corynebacterium appendicis Actinobacteria Rare + neg neg
Corynebacterium argentoratense Actinobacteria Rare + neg
Corynebacterium aurimucosum Actinobacteria Rare + neg neg neg neg
Corynebacterium bouchesdurhonense Actinobacteria Rare +
Corynebacterium bovis Actinobacteria Rare + neg
Corynebacterium callunae Actinobacteria Unlikely + neg neg
Corynebacterium casei Actinobacteria Rare + neg neg neg
Corynebacterium coyleae Actinobacteria Rare + neg neg neg neg
Corynebacterium cystitidis Actinobacteria Rare + +
Corynebacterium diphtheriae Actinobacteria Non vr
Corynebacterium doosanense Actinobacteria Rare +
Corynebacterium durum Actinobacteria Minor + neg
Corynebacterium efficiens Actinobacteria Rare + neg neg
Corynebacterium falsenii Actinobacteria Rare + neg neg
Corynebacterium flavescens Actinobacteria Rare vr neg neg
Corynebacterium freneyi Actinobacteria Rare + neg neg neg d d(neg)
Corynebacterium genitalium Actinobacteria Rare +
Corynebacterium glaucum Actinobacteria Rare + neg neg
Corynebacterium glucuronolyticum Actinobacteria Rare + neg
Corynebacterium glutamicum Actinobacteria Rare + neg neg
Corynebacterium ihumii Actinobacteria Rare + + neg + + +
Corynebacterium jeddahense Actinobacteria Rare + neg neg neg neg neg
Corynebacterium jeikeium Actinobacteria Rare + neg neg
Corynebacterium kroppenstedtii Actinobacteria Minor + neg neg
Corynebacterium lipophiloflavum Actinobacteria Rare + neg
Corynebacterium lujinxingii Actinobacteria Rare +
Corynebacterium matruchotii Actinobacteria Unlikely +
Corynebacterium minutissimum Actinobacteria Rare + neg neg neg neg
Corynebacterium mucifaciens Actinobacteria Rare + neg neg
Corynebacterium neomassiliense Actinobacteria Rare + neg neg neg neg neg
Corynebacterium otitidis Actinobacteria Rare + neg
Corynebacterium pacaense Actinobacteria Rare + neg + neg neg neg
Corynebacterium propinquum Actinobacteria Rare + neg
Corynebacterium provencense Actinobacteria Rare +
Corynebacterium pseudodiphtheriticum Actinobacteria Rare +
Corynebacterium pseudogenitalium Actinobacteria Rare +
Corynebacterium pyruviciproducens Actinobacteria Rare + neg
Corynebacterium riegelii Actinobacteria Rare + neg neg neg neg
Corynebacterium sanguinis Actinobacteria Rare + neg
Corynebacterium simulans Actinobacteria Rare + neg neg neg neg neg
Corynebacterium singulare Actinobacteria Rare + neg
Corynebacterium stationis Actinobacteria Rare + neg neg
Corynebacterium striatum Actinobacteria Rare + neg neg neg +
Corynebacterium suicordis Actinobacteria Rare + neg neg neg
Corynebacterium sundsvallense Actinobacteria Rare + neg neg neg
Corynebacterium tuberculostearicum Actinobacteria Rare + neg neg neg neg
Corynebacterium ulcerans Actinobacteria Rare + +
Corynebacterium urealyticum Actinobacteria Rare + neg neg neg
Corynebacterium ureicelerivorans Actinobacteria Rare + neg neg
Corynebacterium urinapleomorphum Actinobacteria Rare +
Corynebacterium variabile Actinobacteria Unlikely + neg
Corynebacterium wankanglinii Actinobacteria Rare +
Corynebacterium xerosis Actinobacteria Rare + d(neg) neg d
Crassaminicella thermophila Firmicutes Unlikely +
Criibacterium bergeronii Firmicutes Rare vr
Cronobacter condimenti Proteobacteria Unlikely neg +
Cronobacter muytjensii Proteobacteria Rare neg
Cronobacter sakazakii Proteobacteria Minor neg +
Cronobacter turicensis Proteobacteria Rare neg
Cruoricaptor ignavus Bacteroidetes Rare neg neg
Cryptobacterium curtum Actinobacteria Minor +
Culturomica massiliensis Bacteroidetes Rare neg
Cupriavidus metallidurans Proteobacteria Unlikely neg neg
Curtobacterium flaccumfaciens Actinobacteria Unlikely + neg
Cutibacterium acnes Actinobacteria Moderate + neg neg
Cutibacterium acnes subsp. defendens Actinobacteria Rare +
Cutibacterium avidum Actinobacteria Rare + neg neg d w +
Cutibacterium granulosum Actinobacteria Minor +
Cytophaga hutchinsonii Bacteroidetes Rare neg
Dakarella massiliensis Proteobacteria Rare neg + + +
Dakotella fusiforme Firmicutes Rare +
Dehalobacter restrictus Firmicutes Non neg
Dehalobacterium formicoaceticum Firmicutes Unlikely +
Dehalococcoides mccartyi Chloroflexi Unlikely unk
Deinococcus aquaticus Deinococcus-Thermus Unlikely neg
Deinococcus caeni Deinococcus-Thermus Unlikely neg
Deinococcus geothermalis Deinococcus-Thermus Non +
Deinococcus proteolyticus Deinococcus-Thermus Unlikely +
Deinococcus reticulitermitis Deinococcus-Thermus Unlikely neg
Deinococcus wulumuqiensis Deinococcus-Thermus Unlikely +
Delftia acidovorans Proteobacteria Rare neg
Delftia lacustris Proteobacteria Unlikely neg
Delftia tsuruhatensis Proteobacteria Rare neg
Dellaglioa algida Firmicutes Rare + d(neg) d(+) neg neg neg
Denitrobacterium detoxificans Actinobacteria Rare +
Dermabacter hominis Actinobacteria Rare + + neg neg neg
Dermacoccus barathri Actinobacteria Non + neg neg
Dermacoccus nishinomiyaensis Actinobacteria Rare + neg
Desemzia incerta Firmicutes Rare +
Desnuesiella massiliensis Firmicutes Rare +
Desulfitobacterium dichloroeliminans Firmicutes Unlikely +
Desulfitobacterium hafniense Firmicutes Minor neg
Desulfococcus multivorans Proteobacteria Rare neg
Desulfocurvibacter africanus Proteobacteria Unlikely neg
Desulfofarcimen acetoxidans Firmicutes Unlikely neg
Desulfomicrobium baculatum Proteobacteria Unlikely neg
Desulfomicrobium orale Proteobacteria Unlikely neg
Desulforamulus reducens Firmicutes Unlikely +
Desulforudis audaxviator Firmicutes Unlikely +
Desulfoscipio gibsoniae Firmicutes Rare neg
Desulfosporosinus youngiae Firmicutes Rare neg
Desulfotomaculum ruminis Firmicutes Unlikely +
Desulfovibrio desulfuricans Proteobacteria Minor neg
Desulfovibrio diazotrophicus Proteobacteria Rare neg
Desulfovibrio fairfieldensis Proteobacteria Minor neg
Desulfovibrio intestinalis Proteobacteria Rare neg
Desulfovibrio legallii Proteobacteria Rare +
Desulfovibrio longreachensis Proteobacteria Rare neg
Desulfovibrio piger Proteobacteria Moderate neg
Desulfovibrio trichonymphae Proteobacteria Non unk
Desulfovibrio vulgaris Proteobacteria Rare neg
Desulfurispirillum indicum Chrysiogenetes Unlikely neg
Desulfurobacterium thermolithotrophum Aquificae Non neg
Devosia chinhatensis Proteobacteria Rare neg
Devosia limi Proteobacteria Unlikely neg
Devosia riboflavina Proteobacteria Unlikely neg
Dialister hominis Firmicutes Rare neg
Dialister invisus Firmicutes Moderate neg
Dialister massiliensis Firmicutes Rare neg
Dialister micraerophilus Firmicutes Rare neg
Dialister pneumosintes Firmicutes Minor neg
Dialister propionicifaciens Firmicutes Rare neg
Dialister succinatiphilus Firmicutes Minor neg
Dielma fastidiosa Firmicutes Minor neg
Dietzia cercidiphylli Actinobacteria Unlikely +
Dietzia cinnamea Actinobacteria Rare + neg
Dietzia kunjamensis Actinobacteria Unlikely +
Dietzia maris Actinobacteria Rare + neg
Dietzia natronolimnaea Actinobacteria Rare + neg
Dolosigranulum pigrum Firmicutes Unlikely +
Dorea faecis Firmicutes Minor
Dorea formicigenerans Firmicutes Widespread + neg neg neg neg neg neg
Dorea hylemonae Firmicutes Rare
Dorea longicatena Firmicutes Widespread + + + neg + neg
Dorea phocaeensis Firmicutes Rare neg neg d neg neg neg
Dorea scindens Firmicutes Rare
Drancourtella massiliensis Firmicutes Rare +
Dubosiella newyorkensis Firmicutes Rare +
Duncaniella dubosii Bacteroidetes Unlikely neg
Duncaniella muris Bacteroidetes Rare neg
Duodenibacillus massiliensis Proteobacteria Minor +
Dyadobacter beijingensis Bacteroidetes Unlikely neg
Dyadobacter fermentans Bacteroidetes Unlikely neg
Dysgonomonas capnocytophagoides Bacteroidetes Rare neg
Dysgonomonas gadei Bacteroidetes Rare neg neg +
Dysgonomonas massiliensis Bacteroidetes Rare neg + + + +
Dysgonomonas mossii Bacteroidetes Rare neg
Dysosmobacter welbionis Firmicutes Moderate neg neg neg neg neg neg
Edwardsiella tarda Proteobacteria Minor neg neg neg neg neg neg
Eggerthella guodeyinii Actinobacteria Rare +
Eggerthella lenta Actinobacteria Widespread + neg neg neg neg
Eggerthella sinensis Actinobacteria Rare +
Eggerthella timonensis Actinobacteria Rare + + + +
Eggerthia catenaformis Firmicutes Minor + + d + d d
Eikenella corrodens Proteobacteria Rare neg
Eisenbergiella massiliensis Firmicutes Moderate neg
Eisenbergiella tayi Firmicutes Moderate neg +
Elizabethkingia meningoseptica Bacteroidetes Unlikely neg
Elizabethkingia miricola Bacteroidetes Non neg
Ellagibacter isourolithinifaciens Actinobacteria Rare +
Elusimicrobium minutum Elusimicrobia Unlikely neg neg neg neg neg
Emergencia timonensis Firmicutes Minor +
Empedobacter brevis Bacteroidetes Rare neg
Empedobacter falsenii Bacteroidetes Rare neg neg + neg +
Enhydrobacter aerosaccus Proteobacteria Rare neg
Enorma massiliensis Actinobacteria Minor +
Enorma phocaeensis Actinobacteria Rare neg
Enorma timonensis Actinobacteria Rare + neg neg neg neg
Ensifer adhaerens Proteobacteria Unlikely neg
Enterobacter asburiae Proteobacteria Minor neg +
Enterobacter cancerogenus Proteobacteria Minor neg +
Enterobacter cloacae Proteobacteria Moderate neg +
Enterobacter cloacae subsp. dissolvens Proteobacteria Rare neg
Enterobacter himalayensis Proteobacteria Minor
Enterobacter hormaechei subsp. hormaechei Proteobacteria Minor neg +
Enterobacter hormaechei subsp. steigerwaltii Proteobacteria Rare neg +
Enterobacter hormaechei subsp. xiangfangensis Proteobacteria Rare neg neg neg neg neg
Enterobacter kobei Proteobacteria Rare neg
Enterobacter ludwigii Proteobacteria Rare neg
Enterobacter massiliensis Proteobacteria Rare neg + neg neg neg
Enterobacter mori Proteobacteria Rare neg
Enterobacter roggenkampii Proteobacteria Rare neg
Enterobacter soli Proteobacteria Rare neg +
Enterobacter timonensis Proteobacteria Rare neg
Enterocloster aldenensis Firmicutes Minor + neg neg
Enterocloster asparagiformis Firmicutes Moderate +
Enterocloster bolteae Firmicutes Widespread + neg
Enterocloster citroniae Firmicutes Moderate + neg neg
Enterocloster clostridioformis Firmicutes Widespread + neg d(neg) neg neg
Enterocloster lavalensis Firmicutes Minor + neg neg neg neg
Enterococcus asini Firmicutes Rare + + neg neg neg d
Enterococcus avium Firmicutes Minor + + neg neg neg neg
Enterococcus burkinafasonensis Firmicutes Rare + neg + neg neg neg
Enterococcus caccae Firmicutes Rare + + neg neg neg d(+)
Enterococcus canintestini Firmicutes Rare + + neg neg neg
Enterococcus canis Firmicutes Rare + + neg neg d
Enterococcus casseliflavus Firmicutes Moderate + + + vr + +
Enterococcus cecorum Firmicutes Rare + + neg neg neg neg
Enterococcus columbae Firmicutes Rare + d + neg + +
Enterococcus devriesei Firmicutes Moderate + + neg neg neg
Enterococcus diestrammenae Firmicutes Rare + + + neg neg neg
Enterococcus dispar Firmicutes Rare + + vr neg neg neg
Enterococcus durans Firmicutes Moderate + + vr neg neg +
Enterococcus eurekensis Firmicutes Rare + neg +
Enterococcus faecalis Firmicutes Widespread + + vr neg neg neg
Enterococcus faecium Firmicutes Widespread + + vr vr neg d(+)
Enterococcus gallinarum Firmicutes Rare + + + neg neg d(+)
Enterococcus gilvus Firmicutes Rare + neg
Enterococcus haemoperoxidus Firmicutes Rare + + d(neg) neg d(+)
Enterococcus hermanniensis Firmicutes Rare + neg neg neg neg
Enterococcus hirae Firmicutes Minor + + + neg neg vr
Enterococcus italicus Firmicutes Rare + neg + neg neg +
Enterococcus lactis Firmicutes Rare + neg neg neg w
Enterococcus malodoratus Firmicutes Rare + + neg neg
Enterococcus massiliensis Firmicutes Rare +
Enterococcus mediterraneensis Firmicutes Rare + + + neg neg neg
Enterococcus moraviensis Firmicutes Rare + + d(neg) neg d
Enterococcus mundtii Firmicutes Rare + + + neg neg
Enterococcus pallens Firmicutes Rare + neg
Enterococcus phoeniculicola Firmicutes Rare + + neg neg neg neg
Enterococcus pseudoavium Firmicutes Rare + + + neg + +
Enterococcus raffinosus Firmicutes Rare + neg neg d
Enterococcus saccharolyticus Firmicutes Rare + + + neg + +
Enterococcus saigonensis Firmicutes Unlikely + + + neg neg +
Enterococcus sulfureus Firmicutes Rare + + neg neg
Enterococcus thailandicus Firmicutes Rare + + neg neg neg
Enterococcus timonensis Firmicutes Rare + neg + neg neg neg
Enterococcus villorum Firmicutes Rare + +
Enteroscipio rubneri Actinobacteria Rare +
Enterovibrio nigricans Proteobacteria Unlikely neg neg
Ereboglobus luteus Verrucomicrobia Unlikely neg
Erwinia billingiae Proteobacteria Unlikely neg neg neg neg neg
Erwinia tasmaniensis Proteobacteria Unlikely neg
Erwinia teleogrylli Proteobacteria Rare neg neg neg neg neg
Erysipelatoclostridium ramosum Firmicutes Widespread + w neg w neg neg neg
Erysipelatoclostridium saccharogumia Firmicutes Minor
Erysipelatoclostridium spiroforme Firmicutes Minor
Erysipelothrix larvae Firmicutes Rare +
Escherichia albertii Proteobacteria Minor neg neg
Escherichia coli Proteobacteria Widespread neg neg neg neg neg
Escherichia dysenteriae Proteobacteria Rare
Escherichia fergusonii Proteobacteria Minor neg +
Escherichia marmotae Proteobacteria Unlikely neg neg neg neg neg neg
Escherichia ruysiae Proteobacteria Rare neg
Ethanoligenens harbinense Firmicutes Rare + neg neg w
Eubacterium barkeri Firmicutes Rare + neg neg neg neg
Eubacterium biforme Firmicutes Moderate + neg neg neg neg
Eubacterium brachy Firmicutes Rare + neg neg neg neg neg neg
Eubacterium callanderi Firmicutes Minor +
Eubacterium cellulosolvens Firmicutes Minor + w + + neg + neg neg
Eubacterium coprostanoligenes Firmicutes Minor + +
Eubacterium dolichum Firmicutes Moderate + neg neg neg neg
Eubacterium infirmum Firmicutes Rare +
Eubacterium limosum Firmicutes Moderate + neg neg neg neg neg neg neg
Eubacterium maltosivorans Firmicutes Rare +
Eubacterium multiforme Firmicutes Rare + neg w neg neg neg neg
Eubacterium nodatum Firmicutes Rare + neg neg neg neg neg neg
Eubacterium oxidoreducens Firmicutes Rare +
Eubacterium plexicaudatum Firmicutes Rare + neg neg neg
Eubacterium pyruvativorans Firmicutes Rare +
Eubacterium ramulus Firmicutes Moderate + neg neg neg neg neg
Eubacterium rectale Firmicutes Widespread + d(+) + neg d(+) w
Eubacterium ruminantium Firmicutes Rare + neg neg neg +
Eubacterium saphenum Firmicutes Rare + neg neg neg neg
Eubacterium siraeum Firmicutes Widespread + neg neg neg w
Eubacterium sulci Firmicutes Rare + neg neg neg neg neg
Eubacterium tenue Firmicutes Minor + neg neg neg neg
Eubacterium uniforme Firmicutes Rare + neg w w neg + +
Eubacterium ventriosum Firmicutes Widespread + d(+) d(+) neg neg d(+)
Eubacterium xylanophilum Firmicutes Rare + neg neg vr neg neg +
Eubacterium yurii Firmicutes Rare + neg neg neg neg
Ewingella americana Proteobacteria Rare neg +
Exiguobacterium aurantiacum Firmicutes Rare + + + neg
Exiguobacterium marinum Firmicutes Rare vr
Exiguobacterium mexicanum Firmicutes Rare + + + + neg
Exiguobacterium undae Firmicutes Rare + d + + +
Ezakiella coagulans Bacteroidetes Minor neg neg neg
Ezakiella massiliensis Bacteroidetes Rare +
Ezakiella peruensis Firmicutes Rare + neg neg neg neg neg
Facklamia hominis Firmicutes Rare + neg neg neg
Facklamia languida Firmicutes Rare + neg
Faecalibacillus faecis Firmicutes Rare +
Faecalibacillus intestinalis Firmicutes Rare +
Faecalibacterium prausnitzii Firmicutes Widespread neg +
Faecalibaculum rodentium Firmicutes Rare +
Faecalicatena contorta Firmicutes Minor + neg d d d(neg) d +
Faecalicatena faecis Firmicutes Moderate
Faecalicatena fissicatena Firmicutes Minor + neg
Faecalicatena glycyrrhizinilyticum Firmicutes Minor
Faecalicatena gnavus Firmicutes Moderate
Faecalicatena lactaris Firmicutes Moderate
Faecalicatena orotica Firmicutes Minor + neg neg + vr
Faecalicatena torques Firmicutes Moderate
Faecalicoccus pleomorphus Firmicutes Minor + neg
Faecalimonas umbilicata Firmicutes Rare +
Faecalitalea cylindroides Firmicutes Widespread + neg neg neg + neg
Fannyhessea vaginae Actinobacteria Minor +
Fastidiosipila sanguinis Firmicutes Rare +
Fenollaria massiliensis Firmicutes Minor neg
Fenollaria timonensis Firmicutes Rare neg
Fermentimonas caenicola Bacteroidetes Rare neg
Ferrimonas balearica Proteobacteria Rare neg
Fibrobacter succinogenes Fibrobacteres Unlikely neg + + neg +
Fictibacillus arsenicus Firmicutes Unlikely +
Filifactor alocis Firmicutes Minor neg neg neg neg neg neg neg
Filifactor villosus Firmicutes Unlikely + neg
Finegoldia magna Firmicutes Widespread + neg neg neg neg
Flaviflexus massiliensis Actinobacteria Rare +
Flavobacterium banpakuense Bacteroidetes Unlikely neg
Flavobacterium caeni Bacteroidetes Non neg + w w
Flavobacterium cheniae Bacteroidetes Rare neg
Flavobacterium daejeonense Bacteroidetes Unlikely neg + +
Flavobacterium lindanitolerans Bacteroidetes Rare neg
Flavobacterium oncorhynchi Bacteroidetes Unlikely neg
Flavobacterium sakaeratica Bacteroidetes Rare neg
Flavonifractor plautii Firmicutes Widespread vr neg neg neg neg neg
Flexispira rappini Proteobacteria Rare neg
Flintibacter butyricus Firmicutes Rare neg
Fournierella massiliensis Firmicutes Moderate neg neg + neg neg neg
Francisella tularensis Proteobacteria Non neg
Franconibacter pulveris Proteobacteria Rare neg
Fredinandcohnia humi Firmicutes Non + neg neg neg
Fretibacterium fastidiosum Synergistetes Rare neg
Fructilactobacillus florum Firmicutes Unlikely + neg neg neg neg neg
Fructilactobacillus fructivorans Firmicutes Unlikely + neg
Fructilactobacillus sanfranciscensis Firmicutes Rare +
Fucophilus fucoidanolyticus Verrucomicrobia Rare neg
Fundidesulfovibrio putealis Proteobacteria Rare neg
Furfurilactobacillus rossiae Firmicutes Unlikely + neg neg neg neg
Fusicatenibacter saccharivorans Firmicutes Moderate + +
Fusobacterium canifelinum Fusobacteria Rare neg
Fusobacterium gonidiaformans Fusobacteria Minor neg
Fusobacterium massiliense Fusobacteria Rare neg +
Fusobacterium mortiferum Fusobacteria Moderate neg
Fusobacterium naviforme Fusobacteria Rare neg
Fusobacterium necrogenes Fusobacteria Rare neg
Fusobacterium necrophorum Fusobacteria Minor neg
Fusobacterium necrophorum subsp. funduliforme Fusobacteria Rare neg neg neg neg neg
Fusobacterium nucleatum Fusobacteria Minor neg neg neg neg
Fusobacterium nucleatum subsp. animalis Fusobacteria Rare neg neg neg
Fusobacterium nucleatum subsp. nucleatum Fusobacteria Minor neg neg neg
Fusobacterium nucleatum subsp. polymorphum Fusobacteria Rare neg neg neg
Fusobacterium nucleatum subsp. vincentii Fusobacteria Rare neg neg neg
Fusobacterium perfoetens Fusobacteria Rare neg neg neg
Fusobacterium periodonticum Fusobacteria Minor neg neg neg neg neg neg
Fusobacterium pseudoperiodonticum Fusobacteria Unlikely neg
Fusobacterium russii Fusobacteria Minor neg
Fusobacterium ulcerans Fusobacteria Rare neg
Fusobacterium varium Fusobacteria Moderate neg neg neg neg neg neg
Gabonia massiliensis Bacteroidetes Rare neg + + +
Gabonibacter massiliensis Bacteroidetes Minor neg
Gabonibacter timonensis Bacteroidetes Rare +
Gallibacterium anatis Proteobacteria Rare neg neg neg neg
Gardnerella leopoldii Actinobacteria Unlikely neg
Gardnerella vaginalis Actinobacteria Minor neg +
Gemella asaccharolytica Firmicutes Rare vr
Gemella haemolysans Firmicutes Minor + neg neg neg neg
Gemella morbillorum Firmicutes Minor + neg neg neg neg
Gemella sanguinis Firmicutes Minor + neg neg neg neg neg
Gemmatimonas groenlandica Gemmatimonadetes Non neg
Gemmiger formicilis Firmicutes Moderate neg neg d(w) neg neg d(neg)
Gemmiger variabile Firmicutes Moderate
Geobacillus stearothermophilus Firmicutes Unlikely + neg + neg +
Geobacillus vulcani Firmicutes Unlikely + d(+) + neg d(+)
Geodermatophilus obscurus Actinobacteria Non +
Georgenia muralis Actinobacteria Rare + neg
Georgenia satyanarayanai Actinobacteria Unlikely +
Geosporobacter ferrireducens Firmicutes Unlikely neg
Gleimia europaea Actinobacteria Rare + neg d d
Globicatella sulfidifaciens Firmicutes Rare vr neg + + +
Glutamicibacter arilaitensis Actinobacteria Unlikely + neg
Glutamicibacter protophormiae Actinobacteria Rare + neg neg
Gorbachella massiliensis Firmicutes Rare neg
Gordonia alkanivorans Actinobacteria Rare +
Gordonia rubripertincta Actinobacteria Unlikely + neg
Gordonia terrae Actinobacteria Rare +
Gordonibacter massiliensis Actinobacteria Rare + neg + neg neg neg
Gordonibacter pamelaeae Actinobacteria Moderate +
Gordonibacter urolithinfaciens Actinobacteria Minor +
Gorillibacterium timonense Firmicutes Rare neg
Gottschalkia acidurici Firmicutes Unlikely +
Gracilibacillus dipsosauri Firmicutes Rare +
Gracilibacillus massiliensis Firmicutes Rare +
Gracilibacillus phocaeensis Firmicutes Rare +
Gracilibacillus thailandensis Firmicutes Non + neg
Gracilibacillus timonensis Firmicutes Rare +
Granulicatella adiacens Firmicutes Minor + neg neg vr neg
Granulicatella elegans Firmicutes Minor + neg neg neg neg
Granulicatella para-adiacens Firmicutes Rare +
Grimontia hollisae Proteobacteria Rare neg neg
Gulosibacter bifidus Actinobacteria Unlikely +
Haemophilus ducreyi Proteobacteria Rare neg neg neg
Haemophilus haemolyticus Proteobacteria Minor neg neg
Haemophilus influenzae Proteobacteria Minor neg neg neg neg neg
Haemophilus parahaemolyticus Proteobacteria Minor neg neg neg
Haemophilus parainfluenzae Proteobacteria Widespread neg neg neg neg neg
Haemophilus paraphrohaemolyticus Proteobacteria Rare neg d neg neg
Haemophilus pittmaniae Proteobacteria Minor neg neg neg neg
Haemophilus quentini Proteobacteria Rare neg
Haemophilus sputorum Proteobacteria Minor neg
Hafnia alvei Proteobacteria Minor neg +
Hafnia paralvei Proteobacteria Rare neg neg
Hahella ganghwensis Proteobacteria Rare neg
Halanaerobaculum tunisiense Firmicutes Unlikely neg +
Halobacillus dabanensis Firmicutes Unlikely +
Halobacillus ihumii Firmicutes Rare + neg neg neg neg
Halobacillus karajensis Firmicutes Non +
Halobacillus massiliensis Firmicutes Unlikely +
Halobacillus salinus Firmicutes Rare +
Halobacillus trueperi Firmicutes Unlikely +
Halobacteroides halobius Firmicutes Unlikely neg
Haloferax alexandrinus Euryarchaeota Unlikely neg
Haloferax massiliensis Euryarchaeota Rare neg
Haloimpatiens massiliensis Firmicutes Rare + + + + + +
Halomonas massiliensis Proteobacteria Rare neg
Halomonas muralis Proteobacteria Non neg
Halomonas salina Proteobacteria Non neg neg
Halomonas utahensis Proteobacteria Unlikely neg
Halopseudomonas bauzanensis Proteobacteria Unlikely neg neg
Halopseudomonas pelagia Proteobacteria Unlikely neg
Haploplasma axanthum Tenericutes Unlikely neg + + +
Harryflintia acetispora Firmicutes Rare neg neg
Hathewaya histolytica Firmicutes Rare +
Hathewaya limosa Firmicutes Rare + neg neg neg neg neg neg
Hathewaya massiliensis Firmicutes Rare + + neg + + +
Helcobacillus massiliensis Actinobacteria Rare + neg neg neg neg neg
Helcococcus sueciensis Firmicutes Rare + neg w
Helicobacter bilis Proteobacteria Unlikely neg
Helicobacter canadensis Proteobacteria Unlikely neg
Helicobacter canis Proteobacteria Unlikely neg
Helicobacter cinaedi Proteobacteria Rare neg
Helicobacter felis Proteobacteria Non neg
Helicobacter fennelliae Proteobacteria Rare neg
Helicobacter heilmannii Proteobacteria Non neg
Helicobacter macacae Proteobacteria Unlikely neg
Helicobacter pametensis Proteobacteria Rare neg
Helicobacter pullorum Proteobacteria Minor neg
Helicobacter pylori Proteobacteria Non neg
Helicobacter rodentium Proteobacteria Rare neg
Helicobacter winghamensis Proteobacteria Rare neg
Heliomicrobium modesticaldum Firmicutes Unlikely neg
Herbaspirillum autotrophicum Proteobacteria Unlikely neg
Herbaspirillum huttiense Proteobacteria Rare neg neg neg neg neg
Herbinix hemicellulosilytica Firmicutes Unlikely +
Herbinix luporum Firmicutes Unlikely +
Herminiimonas contaminans Proteobacteria Unlikely neg
Hespellia porcina Firmicutes Rare +
Hespellia stercorisuis Firmicutes Rare +
Heyndrickxia oleronia Firmicutes Unlikely neg neg neg d
Heyndrickxia sporothermodurans Firmicutes Unlikely + d neg neg d(w)
Histophilus somni Proteobacteria Rare neg neg
Holdemanella biformis Firmicutes Moderate +
Holdemania filiformis Firmicutes Moderate + neg + neg neg
Holdemania massiliensis Firmicutes Minor + + +
Holophaga foetida Acidobacteria Non neg
Howardella ureilytica Firmicutes Rare +
Hugonella massiliensis Actinobacteria Rare + + + neg + neg
Humisphaera borealis Planctomycetes Unlikely neg
Hungatella effluvii Firmicutes Minor +
Hungatella hathewayi Firmicutes Widespread + + neg neg neg +
Hungatella saccharolyticum Firmicutes Rare
Hungatella xylanolytica Firmicutes Rare neg neg +
Hydrogenibacillus schlegelii Firmicutes Unlikely vr
Hydrogenoanaerobacterium saccharovorans Firmicutes Rare neg + + neg
Hydrogenophaga pseudoflava Proteobacteria Unlikely neg
Hydrogenovibrio crunogenus Proteobacteria Unlikely neg
Hymenobacter rigui Bacteroidetes Rare neg +
Hymenobacter russus Bacteroidetes Unlikely neg
Hyphomicrobium facile Proteobacteria Rare neg
Ihubacter massiliensis Firmicutes Rare neg
Ihuprevotella massiliensis Bacteroidetes Rare neg
Ileibacterium valens Firmicutes Rare +
Inediibacterium massiliense Firmicutes Rare +
Intestinibacillus massiliensis Firmicutes Rare neg
Intestinibacter bartlettii Firmicutes Widespread +
Intestinibaculum porci Firmicutes Unlikely + neg neg neg neg
Intestinimonas butyriciproducens Firmicutes Moderate +
Intestinimonas gabonensis Firmicutes Rare neg
Intestinimonas massiliensis Firmicutes Moderate neg + + + + +
Intestinimonas timonensis Firmicutes Rare neg
Isoptericola variabilis Actinobacteria Rare +
Janibacter anophelis Actinobacteria Rare +
Janibacter hoylei Actinobacteria Non +
Janibacter limosus Actinobacteria Unlikely + neg neg neg neg
Janibacter terrae Actinobacteria Rare + neg neg neg neg
Jeotgalibaca arthritidis Firmicutes Unlikely + neg + neg neg neg
Jeotgalibaca porci Firmicutes Unlikely + neg + neg neg neg
Jeotgalicoccus halotolerans Firmicutes Rare +
Johnsonella ignava Firmicutes Rare neg neg neg neg neg
Jonquetella anthropi Synergistetes Rare neg
Kalamiella piersonii Proteobacteria Unlikely neg
Kallipyga gabonensis Firmicutes Rare + +
Kallipyga massiliensis Firmicutes Rare +
Kandleria vitulina Firmicutes Rare + + + vr
Kerstersia gyiorum Proteobacteria Rare neg
Khelaifiella massiliensis Firmicutes Rare +
Kineothrix alysoides Firmicutes Rare neg
Kingella denitrificans Proteobacteria Unlikely neg
Kingella kingae Proteobacteria Rare neg
Kingella oralis Proteobacteria Unlikely neg
Kiritimatiella glycovorans Kiritimatiellaeota Unlikely neg
Klebsiella aerogenes Proteobacteria Moderate neg + neg
Klebsiella grimontii Proteobacteria Minor neg
Klebsiella michiganensis Proteobacteria Minor neg +
Klebsiella oxytoca Proteobacteria Moderate neg +
Klebsiella pneumoniae Proteobacteria Widespread neg + + + neg neg neg
Klebsiella pneumoniae subsp. ozaenae Proteobacteria Rare neg
Klebsiella pneumoniae subsp. rhinoscleromatis Proteobacteria Rare neg
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria Minor neg neg + neg d(neg) d(neg)
Klebsiella quasivariicola Proteobacteria Minor
Klebsiella variicola Proteobacteria Minor neg +
Kluyvera ascorbata Proteobacteria Minor neg +
Kluyvera cryocrescens Proteobacteria Rare neg
Kluyvera georgiana Proteobacteria Rare neg
Kluyvera intermedia Proteobacteria Rare neg +
Kocuria carniphila Actinobacteria Unlikely +
Kocuria marina Actinobacteria Rare + neg
Kocuria palustris Actinobacteria Unlikely + neg neg
Kocuria polaris Actinobacteria Unlikely +
Kocuria rhizophila Actinobacteria Unlikely + neg neg
Kocuria rosea Actinobacteria Unlikely +
Kocuria salsicia Actinobacteria Unlikely +
Kocuria varians Actinobacteria Rare +
Kosakonia cowanii Proteobacteria Minor neg
Krasilnikoviella flava Actinobacteria Rare +
Kurthia gibsonii Firmicutes Rare + neg neg neg neg
Kurthia massiliensis Firmicutes Rare +
Kurthia senegalensis Firmicutes Rare +
Kurthia sp. Dielmo Firmicutes Rare +
Kurthia zopfii Firmicutes Rare + neg
Kushneria sinocarnis Firmicutes Unlikely neg
Kytococcus schroeteri Actinobacteria Rare + neg neg
Kytococcus sedentarius Actinobacteria Rare + neg
Labilithrix luteola Proteobacteria Non neg
Lachnoanaerobaculum orale Firmicutes Rare +
Lachnoanaerobaculum saburreum Firmicutes Rare +
Lachnoanaerobaculum umeaense Firmicutes Rare +
Lachnobacterium bovis Firmicutes Rare + neg neg neg
Lachnoclostridium bouchesdurhonense Firmicutes Rare neg
Lachnoclostridium edouardi Firmicutes Minor +
Lachnoclostridium massiliosenegalense Firmicutes Rare +
Lachnoclostridium pacaense Firmicutes Rare vr
Lachnoclostridium phocaeense Firmicutes Rare + neg neg neg +
Lachnoclostridium phytofermentans Firmicutes Minor neg
Lachnoclostridium touaregense Firmicutes Rare +
Lachnospira eligens Firmicutes Widespread + neg neg neg neg w(+) neg
Lachnospira multipara Firmicutes Rare + neg neg + neg neg
Lachnospira pectinoschiza Firmicutes Minor +
Lachnospira rogosae Firmicutes Moderate
Lacrimispora aerotolerans Firmicutes Rare neg neg w + +
Lacrimispora amygdalina Firmicutes Rare +
Lacrimispora celerecrescens Firmicutes Rare + + + neg neg
Lacrimispora indolis Firmicutes Minor neg
Lacrimispora saccharolytica Firmicutes Moderate neg
Lacrimispora sphenoides Firmicutes Minor + neg neg
Lacticaseibacillus casei Firmicutes Rare + + neg + neg neg neg
Lacticaseibacillus paracasei Firmicutes Minor + + neg neg d(neg) neg
Lacticaseibacillus paracasei subsp. tolerans Firmicutes Unlikely + neg neg neg neg
Lacticaseibacillus paragasseri Firmicutes Unlikely + + + neg neg +
Lacticaseibacillus rhamnosus Firmicutes Moderate + + neg + neg neg neg
Lacticaseibacillus saniviri Firmicutes Unlikely + + neg neg w
Lacticaseibacillus sharpeae Firmicutes Unlikely + +
Lacticaseibacillus zeae Firmicutes Unlikely + + neg neg neg
Lacticigenium naphtae Firmicutes Non vr +
Lactiplantibacillus paraplantarum Firmicutes Rare + + neg neg neg
Lactiplantibacillus pentosus Firmicutes Rare + + + neg neg neg
Lactiplantibacillus plantarum Firmicutes Moderate + + neg neg neg
Lactiplantibacillus xiangfangensis Firmicutes Rare + neg d neg neg neg
Lactobacillus acidophilus Firmicutes Widespread + + neg neg neg neg
Lactobacillus amylolyticus Firmicutes Unlikely + d
Lactobacillus amylovorus Firmicutes Minor + d neg d neg d
Lactobacillus crispatus Firmicutes Moderate + + neg neg +
Lactobacillus delbrueckii subsp. bulgaricus Firmicutes Rare + neg neg
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes Minor + neg neg neg neg neg
Lactobacillus delbrueckii subsp. lactis Firmicutes Unlikely + d d
Lactobacillus equicursoris Firmicutes Rare + w
Lactobacillus gasseri Firmicutes Moderate + + neg neg neg d(+)
Lactobacillus gigeriorum Firmicutes Unlikely + + + neg neg +
Lactobacillus hamsteri Firmicutes Rare + + + + neg
Lactobacillus helveticus Firmicutes Rare + neg neg neg neg neg
Lactobacillus hominis Firmicutes Unlikely + neg + neg neg +
Lactobacillus iners Firmicutes Rare + neg vr neg neg +
Lactobacillus intestinalis Firmicutes Unlikely + neg neg neg
Lactobacillus jensenii Firmicutes Unlikely + + neg + neg neg vr
Lactobacillus johnsonii Firmicutes Minor + + neg + neg neg neg
Lactobacillus kalixensis Firmicutes Minor + + neg neg +
Lactobacillus kefiranofaciens Firmicutes Rare + neg d neg
Lactobacillus leichmannii Firmicutes Rare + + +
Lactobacillus pasteurii Firmicutes Unlikely + + + neg neg +
Lactobacillus psittaci Firmicutes Unlikely + neg
Lactobacillus rogosae Firmicutes Rare + neg neg neg neg
Lactobacillus timonensis Firmicutes Unlikely +
Lactobacillus ultunensis Firmicutes Minor + d(w) neg neg d
Lactococcus cremoris Firmicutes Rare + neg d(+) neg neg neg
Lactococcus garvieae Firmicutes Minor + + vr neg neg neg
Lactococcus lactis subsp. lactis Firmicutes Widespread + d(neg) vr neg neg d
Lactococcus petauri Firmicutes Rare + + + neg
Lactococcus plantarum Firmicutes Rare + + + neg neg neg
Lactococcus raffinolactis Firmicutes Minor + d vr neg d +
Lactonifactor longoviformis Firmicutes Minor neg
Lacunisphaera limnophila Verrucomicrobia Unlikely neg
Lagierella massiliensis Firmicutes Rare + +
Lancefieldella parvula Actinobacteria Minor + neg d(neg) neg d(+)
Lancefieldella rimae Actinobacteria Minor + neg neg d(neg) neg
Lapidilactobacillus dextrinicus Firmicutes Non + + w +
Laribacter hongkongensis Proteobacteria Rare neg
Lascolabacillus massiliensis Bacteroidetes Rare neg
Latilactobacillus curvatus Firmicutes Minor + d(+) neg neg neg neg
Latilactobacillus sakei Firmicutes Minor + neg neg neg neg neg
Latilactobacillus sakei subsp. carnosus Firmicutes Rare + neg
Lautropia mirabilis Proteobacteria Minor neg neg neg neg neg
Lawsonella clevelandensis Actinobacteria Rare vr
Lawsonia intracellularis Proteobacteria Unlikely neg
Lawsonibacter asaccharolyticus Firmicutes Moderate +
Leclercia adecarboxylata Proteobacteria Rare neg neg
Lederbergia galactosidilyticus Firmicutes Rare + d neg d d
Lederbergia lentus Firmicutes Unlikely + w neg w
Legionella bozemanae Proteobacteria Non neg
Legionella pneumophila Proteobacteria Non neg
Lelliottia amnigena Proteobacteria Rare neg neg + d(neg) neg neg
Lelliottia nimipressuralis Proteobacteria Rare neg
Leminorella grimontii Proteobacteria Rare neg
Leminorella richardii Proteobacteria Rare neg
Lentibacillus massiliensis Firmicutes Rare +
Lentibacillus timonensis Firmicutes Rare + neg + neg neg neg
Lentilactobacillus buchneri subsp. buchneri Firmicutes Minor + neg neg neg vr neg
Lentilactobacillus diolivorans Firmicutes Unlikely + neg neg neg neg neg
Lentilactobacillus farraginis Firmicutes Unlikely + neg
Lentilactobacillus hilgardii Firmicutes Rare + neg neg neg neg neg
Lentilactobacillus kefiri Firmicutes Non + neg vr neg neg neg
Lentilactobacillus kisonensis Firmicutes Unlikely + neg neg neg neg
Lentilactobacillus otakiensis Firmicutes Unlikely + neg neg neg neg
Lentilactobacillus parabuchneri Firmicutes Rare + neg neg neg neg neg
Lentilactobacillus parafarraginis Firmicutes Unlikely + neg
Lentilactobacillus senioris Firmicutes Unlikely + neg neg neg neg
Leptospira interrogans Spirochaetes Non neg
Leptotrichia amnionii Fusobacteria Rare neg
Leptotrichia buccalis Fusobacteria Rare neg + neg neg neg neg
Leptotrichia hofstadii Fusobacteria Rare neg
Leptotrichia hongkongensis Fusobacteria Rare vr
Leptotrichia massiliensis Fusobacteria Rare +
Leptotrichia shahii Fusobacteria Rare neg
Leptotrichia wadei Fusobacteria Rare neg
Leucobacter aridicollis Actinobacteria Unlikely +
Leuconostoc carnosum Firmicutes Unlikely + neg
Leuconostoc citreum Firmicutes Minor + d(+) neg + neg neg neg
Leuconostoc gelidum Firmicutes Rare + neg neg neg neg
Leuconostoc gelidum subsp. gasicomitatum Firmicutes Non + neg + neg neg neg
Leuconostoc holzapfelii Firmicutes Rare + neg neg neg neg
Leuconostoc inhae Firmicutes Unlikely + d neg neg
Leuconostoc kimchii Firmicutes Rare + + neg neg
Leuconostoc lactis Firmicutes Minor + neg neg neg neg
Leuconostoc mesenteroides subsp. cremoris Firmicutes Rare + d(neg) d d neg neg
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes Minor + d(neg) neg vr neg neg neg
Leuconostoc pseudomesenteroides Firmicutes Unlikely + d(neg) d neg
Levilactobacillus brevis Firmicutes Minor + neg neg d neg neg neg
Levilactobacillus brevis subsp. gravesensis Firmicutes Unlikely + d
Levilactobacillus namurensis Firmicutes Unlikely + neg + neg neg neg
Levilactobacillus parabrevis Firmicutes Unlikely + neg neg neg neg neg
Levyella massiliensis Firmicutes Rare +
Ligilactobacillus acidipiscis Firmicutes Unlikely + d neg
Ligilactobacillus agilis Firmicutes Rare + + neg neg neg neg
Ligilactobacillus animalis Firmicutes Minor + + neg neg neg neg
Ligilactobacillus ceti Firmicutes Unlikely + neg neg neg
Ligilactobacillus equi Firmicutes Unlikely + neg neg d(neg) neg
Ligilactobacillus murinus Firmicutes Rare + d +
Ligilactobacillus pobuzihii Firmicutes Unlikely + neg neg neg
Ligilactobacillus ruminis Firmicutes Widespread + + neg neg neg
Ligilactobacillus salivarius Firmicutes Widespread + neg neg neg neg neg
Limnobacter thiooxidans Proteobacteria Unlikely neg
Limnochorda pilosa Firmicutes Unlikely neg
Limosilactobacillus antri Firmicutes Rare + neg neg neg neg neg
Limosilactobacillus caccae Firmicutes Rare + neg neg + +
Limosilactobacillus coleohominis Firmicutes Unlikely + neg neg neg neg neg
Limosilactobacillus fermentum Firmicutes Widespread + neg neg neg neg neg neg
Limosilactobacillus frumenti Firmicutes Non + + +
Limosilactobacillus gastricus Firmicutes Unlikely + + neg neg neg neg
Limosilactobacillus ingluviei Firmicutes Non + neg d neg neg neg
Limosilactobacillus mucosae Firmicutes Rare + neg neg + neg neg neg
Limosilactobacillus oris Firmicutes Minor + + neg neg neg
Limosilactobacillus reuteri Firmicutes Minor + neg neg neg neg neg
Limosilactobacillus vaginalis Firmicutes Rare + neg neg neg neg neg
Limosilactobacillus walteri Firmicutes Rare + +
Liquorilactobacillus mali Firmicutes Unlikely + + + neg +
Liquorilactobacillus satsumensis Firmicutes Non + neg
Liquorilactobacillus vini Firmicutes Unlikely + + neg neg neg
Listeria floridensis Firmicutes Rare + + + neg neg
Listeria grayi Firmicutes Rare + d + neg neg neg
Listeria innocua Firmicutes Rare + d + neg neg neg
Listeria ivanovii Firmicutes Rare + + vr neg neg neg
Listeria marthii Firmicutes Rare +
Listeria monocytogenes Firmicutes Rare + + + neg neg neg
Listeria seeligeri Firmicutes Rare + vr neg d
Listeria welshimeri Firmicutes Rare + + vr neg neg +
Litchfieldia alkalitelluris Firmicutes Rare + + neg
Loigolactobacillus bifermentans Firmicutes Unlikely + neg neg neg
Loigolactobacillus coryniformis Firmicutes Minor + neg d(neg) neg neg neg
Loigolactobacillus coryniformis subsp. torquens Firmicutes Unlikely + neg neg
Longicatena caecimuris Firmicutes Rare +
Lutispora thermophila Firmicutes Unlikely neg
Luxibacter massiliensis Firmicutes Rare + + + neg neg +
Lysinibacillus boronitolerans Firmicutes Rare + neg w neg neg
Lysinibacillus fusiformis Firmicutes Rare vr
Lysinibacillus macroides Firmicutes Unlikely vr
Lysinibacillus meyeri Firmicutes Unlikely + neg neg neg neg
Lysinibacillus sphaericus Firmicutes Rare + neg neg neg neg
Lysinibacillus varians Firmicutes Rare +
Lysinibacillus xylanilyticus Firmicutes Rare + neg neg neg neg
Lysobacter soli Proteobacteria Rare neg neg
Macellibacteroides fermentans Bacteroidetes Rare +
Macrococcus caseolyticus Firmicutes Unlikely +
Mageeibacillus indolicus Firmicutes Rare vr
Mahella australiensis Firmicutes Unlikely +
Mailhella massiliensis Proteobacteria Rare neg
Mameliella alba Proteobacteria Unlikely neg neg
Mammaliicoccus fleurettii Firmicutes Rare +
Mammaliicoccus lentus Firmicutes Rare + +
Mammaliicoccus sciuri Firmicutes Rare + neg
Mammaliicoccus vitulinus Firmicutes Unlikely + neg neg
Mannheimia granulomatis Proteobacteria Rare neg d d
Mannheimia haemolytica Proteobacteria Rare neg neg neg
Mannheimia succiniciproducens Proteobacteria Rare neg
Marasmitruncus massiliensis Firmicutes Rare +
Marseilla massiliensis Bacteroidetes Rare neg
Marseillibacter massiliensis Firmicutes Rare neg
Marvinbryantia formatexigens Firmicutes Moderate +
Massilia aurea Proteobacteria Unlikely neg
Massilia brevitalea Proteobacteria Non neg
Massilia haematophila Proteobacteria Rare neg
Massilia norwichensis Proteobacteria Unlikely neg
Massilia timonae Proteobacteria Non neg neg
Massilia varians Proteobacteria Unlikely neg
Massilibacillus massiliensis Firmicutes Rare +
Massilibacterium senegalense Firmicutes Rare neg + neg neg + neg
Massilicoli timonensis Firmicutes Rare neg + neg + + neg
Massiliimalia massiliensis Firmicutes Rare neg
Massiliimalia timonensis Firmicutes Minor +
Massilimicrobiota timonensis Firmicutes Moderate neg + + + + +
Massilioclostridium coli Firmicutes Moderate neg neg
Massiliprevotella massiliensis Bacteroidetes Rare neg
Massilistercora timonensis Firmicutes Rare neg neg d neg d
Mediterranea massiliensis Bacteroidetes Rare neg +
Mediterraneibacter faecis Firmicutes Minor +
Mediterraneibacter glycyrrhizinilyticus Firmicutes Minor +
Mediterraneibacter massiliensis Firmicutes Rare + neg + neg neg neg
Megalodesulfovibrio gigas Proteobacteria Unlikely neg
Megamonas funiformis Firmicutes Minor neg neg neg neg d neg
Megamonas hypermegale Firmicutes Moderate neg d neg neg d neg
Megamonas rupellensis Firmicutes Rare neg
Megasphaera cerevisiae Firmicutes Rare neg
Megasphaera elsdenii Firmicutes Moderate neg neg neg
Megasphaera indica Firmicutes Rare neg
Megasphaera massiliensis Firmicutes Rare neg w +
Megasphaera micronuciformis Firmicutes Minor neg neg neg
Megasphaera stantonii Firmicutes Rare neg
Meiothermus silvanus Deinococcus-Thermus Unlikely neg
Merdibacter massiliensis Firmicutes Rare neg
Merdimonas faecis Firmicutes Rare +
Mesobacillus jeotgali Firmicutes Rare vr neg + + neg +
Mesobacillus subterraneus Firmicutes Rare neg
Mesorhizobium australicum Proteobacteria Unlikely neg
Mesorhizobium jarvisii Proteobacteria Unlikely neg neg neg neg
Mesorhizobium loti Proteobacteria Rare neg
Mesorhizobium muleiense Proteobacteria Unlikely neg
Mesosutterella multiformis Proteobacteria Rare neg
Metabacillus galliciensis Firmicutes Unlikely +
Metabacillus idriensis Firmicutes Rare + + + + neg +
Metabacillus litoralis Firmicutes Rare vr
Metabacillus niabensis Firmicutes Rare +
Metakosakonia massiliensis Proteobacteria Rare neg
Metamycoplasma anseris Tenericutes Unlikely unk
Metaprevotella massiliensis Bacteroidetes Rare neg
Methanobrevibacter arboriphilus Euryarchaeota Rare +
Methanobrevibacter millerae Euryarchaeota Rare +
Methanobrevibacter oralis Euryarchaeota Rare +
Methanobrevibacter ruminantium Euryarchaeota Rare +
Methanobrevibacter smithii Euryarchaeota Moderate +
Methanococcus voltae Euryarchaeota Rare neg
Methanomassiliicoccus intestinalis Euryarchaeota Rare +
Methanomassiliicoccus luminyensis Candidatus Thermoplasmatota Rare +
Methanomethylophilus alvus Candidatus Thermoplasmatota Rare
Methanosphaera stadtmanae Euryarchaeota Minor +
Methylibium petroleiphilum Proteobacteria Unlikely neg
Methylobacterium adhaesivum Proteobacteria Unlikely neg
Methylobacterium brachiatum Proteobacteria Unlikely neg
Methylobacterium jeotgali Proteobacteria Non neg neg neg neg neg
Methylobacterium mesophilicum Proteobacteria Non neg neg neg neg neg neg
Methylobacterium organophilum Proteobacteria Unlikely neg
Methylobacterium oryzae Proteobacteria Unlikely neg
Methylobacterium phyllosphaerae Proteobacteria Unlikely neg
Methylobacterium radiotolerans Proteobacteria Non neg neg neg neg neg neg
Methylomusa anaerophila Firmicutes Unlikely neg
Methylorubrum aminovorans Proteobacteria Rare neg neg neg neg neg neg
Methylorubrum extorquens Proteobacteria Non neg neg neg neg neg neg
Methylorubrum populi Proteobacteria Unlikely neg
Methylorubrum thiocyanatum Proteobacteria Unlikely neg neg neg neg neg neg
Methylorubrum zatmanii Proteobacteria Unlikely neg neg neg neg neg neg
Methyloversatilis discipulorum Proteobacteria Rare neg
Methyloversatilis universalis Proteobacteria Rare neg
Microbacterium aurum Actinobacteria Rare + neg neg w w
Microbacterium chocolatum Actinobacteria Unlikely + neg neg
Microbacterium deminutum Actinobacteria Unlikely +
Microbacterium esteraromaticum Actinobacteria Unlikely +
Microbacterium foliorum Actinobacteria Unlikely + + d d d
Microbacterium ginsengisoli Actinobacteria Non + neg + neg neg neg
Microbacterium gubbeenense Actinobacteria Unlikely + neg
Microbacterium hydrocarbonoxydans Actinobacteria Unlikely +
Microbacterium kitamiense Actinobacteria Unlikely +
Microbacterium lacticum Actinobacteria Unlikely + neg neg vr neg +
Microbacterium liquefaciens Actinobacteria Unlikely +
Microbacterium luteolum Actinobacteria Non + neg
Microbacterium maritypicum Actinobacteria Unlikely + neg
Microbacterium mitrae Actinobacteria Unlikely +
Microbacterium natoriense Actinobacteria Unlikely + + + + + +
Microbacterium oleivorans Actinobacteria Unlikely +
Microbacterium oxydans Actinobacteria Unlikely + neg
Microbacterium paraoxydans Actinobacteria Rare +
Microbacterium phyllosphaerae Actinobacteria Unlikely + + d d d
Microbacterium saccharophilum Actinobacteria Unlikely +
Microbacterium schleiferi Actinobacteria Unlikely + neg
Microbacterium sediminicola Actinobacteria Unlikely +
Microbacterium testaceum Actinobacteria Non + neg
Microbispora rosea Actinobacteria Rare +
Micrococcus cohnii Actinobacteria Unlikely +
Micrococcus endophyticus Actinobacteria Unlikely + neg + neg neg neg
Micrococcus luteus Actinobacteria Minor + neg neg neg neg neg neg
Micrococcus lylae Actinobacteria Rare + neg + + +
Micrococcus terreus Actinobacteria Rare +
Microlunatus phosphovorus Actinobacteria Unlikely +
Micromonospora aurantiaca Actinobacteria Rare + neg
Micropruina glycogenica Actinobacteria Rare +
Microvirga aerophila Proteobacteria Unlikely neg
Microvirga massiliensis Proteobacteria Rare neg neg neg neg neg
Microvirgula aerodenitrificans Proteobacteria Unlikely neg
Millionella massiliensis Bacteroidetes Rare neg
Miniphocaeibacter massiliensis Firmicutes Rare +
Mitsuokella jalaludinii Firmicutes Minor neg neg + neg neg +
Mitsuokella multacida Firmicutes Moderate neg neg + + d(neg) neg +
Mixta calida Proteobacteria Rare neg neg neg neg neg
Mixta intestinalis Proteobacteria Rare neg
Mobilibacterium massiliense Firmicutes Rare neg
Mobilibacterium timonense Firmicutes Rare neg
Mobilicoccus massiliensis Actinobacteria Rare +
Mobiluncus curtisii Actinobacteria Rare vr neg neg neg w neg neg
Moellerella wisconsensis Proteobacteria Rare neg
Mogibacterium diversum Firmicutes Rare +
Mogibacterium neglectum Firmicutes Rare +
Mogibacterium pumilum Firmicutes Rare +
Mogibacterium timidum Firmicutes Rare + neg neg neg neg neg neg
Mogibacterium vescum Firmicutes Unlikely +
Monoglobus pectinilyticus Firmicutes Minor +
Moorella glycerini Firmicutes Unlikely +
Moraxella catarrhalis Proteobacteria Unlikely neg neg neg
Moraxella osloensis Proteobacteria Unlikely neg
Mordavella massiliensis Firmicutes Rare neg
Morganella morganii Proteobacteria Minor neg neg
Moryella indoligenes Firmicutes Rare + neg neg
Mucispirillum schaedleri Deferribacteres Rare neg
Murdochiella asaccharolytica Firmicutes Rare +
Murdochiella massiliensis Firmicutes Rare +
Murdochiella vaginalis Firmicutes Rare + neg neg neg neg neg
Muribaculum gordoncarteri Bacteroidetes Unlikely neg
Muribaculum intestinale Bacteroidetes Minor neg
Murimonas intestini Firmicutes Rare +
Mycobacterium abscessus Actinobacteria Unlikely vr neg
Mycobacterium avium Actinobacteria Unlikely vr neg
Mycobacterium avium subsp. paratuberculosis Actinobacteria Unlikely vr
Mycobacterium colombiense Actinobacteria Rare vr
Mycobacterium florentinum Actinobacteria Rare vr
Mycobacterium fortuitum Actinobacteria Rare vr neg
Mycobacterium gastri Actinobacteria Rare vr
Mycobacterium gordonae Actinobacteria Rare vr
Mycobacterium interjectum Actinobacteria Rare vr
Mycobacterium kansasii Actinobacteria Unlikely vr
Mycobacterium lentiflavum Actinobacteria Rare vr
Mycobacterium simiae Actinobacteria Rare vr
Mycobacterium terrae Actinobacteria Rare vr
Mycobacterium tuberculosis Actinobacteria Non vr
Mycobacterium tuberculosis variant africanum Actinobacteria Non vr
Mycobacterium tuberculosis variant bovis Actinobacteria Unlikely +
Mycobacteroides abscessus subsp. bolletii Actinobacteria Unlikely +
Mycolicibacterium aubagnense Actinobacteria Non + neg
Mycolicibacterium cosmeticum Actinobacteria Unlikely vr
Mycolicibacterium houstonense Actinobacteria Rare + neg
Mycolicibacterium mageritense Actinobacteria Unlikely +
Mycolicibacterium neoaurum Actinobacteria Rare +
Mycoplasma hominis Tenericutes Rare neg neg neg
Mycoplasma muris Tenericutes Rare neg
Mycoplasma pneumoniae Tenericutes Rare neg
Mycoplasmopsis arginini Tenericutes Unlikely neg
Mycoplasmopsis californica Tenericutes Unlikely neg
Myroides odoratimimus Bacteroidetes Unlikely neg
Myroides odoratus Bacteroidetes Unlikely neg
Nakamurella multipartita Actinobacteria Unlikely +
Nanosynbacter lyticus Candidatus Saccharibacteria Unlikely +
Natronorubrum bangense Euryarchaeota Non neg
Nautilia nitratireducens Proteobacteria Unlikely neg
Ndongobacter massiliensis Firmicutes Unlikely neg
Necropsobacter rosorum Proteobacteria Rare neg neg neg neg neg
Negativibacillus massiliensis Firmicutes Minor neg
Negativicoccus massiliensis Firmicutes Rare neg
Negativicoccus succinicivorans Firmicutes Rare neg
Neglecta timonensis Firmicutes Rare +
Neisseria bacilliformis Proteobacteria Rare neg
Neisseria canis Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria cinerea Proteobacteria Minor neg neg neg neg neg neg neg
Neisseria elongata Proteobacteria Minor neg neg neg neg neg neg neg
Neisseria flava Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria flavescens Proteobacteria Minor neg neg neg neg neg neg neg
Neisseria gonorrhoeae Proteobacteria Non neg neg neg neg neg neg neg
Neisseria lactamica Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria macacae Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria meningitidis Proteobacteria Unlikely neg neg neg neg neg neg neg
Neisseria mucosa Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria oralis Proteobacteria Rare neg
Neisseria perflava Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria polysaccharea Proteobacteria Rare neg
Neisseria shayeganii Proteobacteria Rare neg neg
Neisseria sicca Proteobacteria Rare neg neg neg neg neg neg neg
Neisseria subflava Proteobacteria Rare neg neg neg neg neg neg neg
Neoactinobaculum massilliense Actinobacteria Rare + neg neg neg neg neg
Neobacillus bataviensis Firmicutes Rare + d neg d d
Neobacillus fumarioli Firmicutes Unlikely + neg neg neg neg
Neobacillus jeddahensis Firmicutes Rare + neg + neg neg neg
Neobacillus massiliamazoniensis Firmicutes Rare + neg neg + neg +
Neobacillus niacini Firmicutes Rare + + d(+) d(+) +
Neobacillus pocheonensis Firmicutes Unlikely + neg
Neobacillus soli Firmicutes Rare + neg + neg +
Neobittarella massiliensis Firmicutes Moderate +
Neofamilia massiliensis Firmicutes Rare
Nesterenkonia massiliensis Actinobacteria Rare + neg
Nevskia ramosa Proteobacteria Unlikely neg
Niallia nealsonii Firmicutes Rare + + + neg neg +
Niameybacter massiliensis Firmicutes Rare +
Nigerium massiliense Actinobacteria Rare +
Nitriliruptor alkaliphilus Actinobacteria Unlikely +
Nitrosomonas eutropha Proteobacteria Rare neg
Nocardia asteroides Actinobacteria Rare +
Nocardia brevicatena Actinobacteria Rare + neg
Nocardia cyriacigeorgica Actinobacteria Rare +
Nocardia mangyaensis Actinobacteria Unlikely +
Nocardia otitidiscaviarum Actinobacteria Rare +
Nocardioides jensenii Actinobacteria Unlikely +
Nocardioides kribbensis Actinobacteria Unlikely +
Nocardioides massiliensis Actinobacteria Unlikely + neg neg neg neg
Nosocomiicoccus massiliensis Firmicutes Rare +
Noviherbaspirillum massiliense Proteobacteria Rare neg
Novosphingobium capsulatum Proteobacteria Unlikely neg neg
Numidum massiliense Firmicutes Rare +
Obesumbacterium proteus Proteobacteria Rare neg
Oceanidesulfovibrio marinus Proteobacteria Unlikely neg
Oceanithermus profundus Deinococcus-Thermus Unlikely neg
Oceanobacillus caeni Firmicutes Rare +
Oceanobacillus iheyensis Firmicutes Unlikely +
Oceanobacillus jeddahense Firmicutes Rare +
Oceanobacillus manasiensis Firmicutes Rare + neg neg neg neg
Oceanobacillus massiliensis Firmicutes Rare + neg + neg neg neg
Oceanobacillus oncorhynchi Firmicutes Non +
Oceanobacillus picturae Firmicutes Unlikely + neg w
Oceanobacillus senegalensis Firmicutes Unlikely +
Oceanobacillus sojae Firmicutes Rare + neg + neg
Oceanobacillus timonensis Firmicutes Unlikely +
Ochrobactrum anthropi Proteobacteria Unlikely neg
Ochrobactrum intermedium Proteobacteria Unlikely neg
Odoribacter laneus Bacteroidetes Minor neg
Odoribacter massiliensis Bacteroidetes Minor
Odoribacter splanchnicus Bacteroidetes Widespread neg
Oenococcus oeni Firmicutes Unlikely + neg +
Oerskovia turbata Actinobacteria Rare + d
Okadaella gastrococcus Firmicutes Rare neg
Olegusella massiliensis Actinobacteria Rare +
Oleidesulfovibrio alaskensis Proteobacteria Rare neg
Oleidesulfovibrio vietnamensis Proteobacteria Rare neg
Oligella urethralis Proteobacteria Rare neg
Olsenella congonensis Actinobacteria Rare +
Olsenella massiliensis Actinobacteria Rare +
Olsenella phocaeensis Actinobacteria Rare +
Olsenella profusa Actinobacteria Rare +
Olsenella timonensis Actinobacteria Rare +
Olsenella uli Actinobacteria Rare + neg neg + neg +
Olsenella urininfantis Actinobacteria Rare +
Oribacterium asaccharolyticum Firmicutes Rare vr
Oribacterium parvum Firmicutes Rare vr neg
Oribacterium sinus Firmicutes Minor vr neg neg
Ornithinibacillus contaminans Firmicutes Unlikely +
Ornithinibacillus massiliensis Firmicutes Rare +
Ornithobacterium rhinotracheale Bacteroidetes Rare neg d(+)
Oscillibacter massiliensis Firmicutes Rare neg
Oscillibacter ruminantium Firmicutes Rare neg neg
Oscillibacter valericigenes Firmicutes Minor neg neg
Oscillospira guillermondii Firmicutes Rare +
Ottowia massiliensis Pseudomonadota Rare neg
Oxalobacter formigenes Proteobacteria Moderate neg
Pacaella massiliensis Synergistetes Rare neg
Paenarthrobacter aurescens Actinobacteria Rare +
Paenarthrobacter ilicis Actinobacteria Non +
Paenibacillus alvei Firmicutes Unlikely + d + neg neg d(+)
Paenibacillus amylolyticus Firmicutes Rare +
Paenibacillus anaericanus Firmicutes Rare neg + + + + +
Paenibacillus antibioticophila Firmicutes Rare + + + + +
Paenibacillus azoreducens Firmicutes Rare vr + +
Paenibacillus barcinonensis Firmicutes Unlikely + + + neg neg neg +
Paenibacillus barengoltzii Firmicutes Unlikely + neg neg
Paenibacillus borealis Firmicutes Unlikely neg + + + + +
Paenibacillus bouchesdurhonensis Firmicutes Rare neg
Paenibacillus chibensis Firmicutes Unlikely + +
Paenibacillus chitinolyticus Firmicutes Rare vr
Paenibacillus cineris Firmicutes Rare vr + d d +
Paenibacillus cookii Firmicutes Unlikely vr + + neg +
Paenibacillus daejeonensis Firmicutes Rare vr + + +
Paenibacillus dendritiformis Firmicutes Rare neg
Paenibacillus donghaensis Firmicutes Unlikely + + + + neg + +
Paenibacillus durus Firmicutes Rare + neg
Paenibacillus faecis Firmicutes Rare + + + + neg +
Paenibacillus favisporus Firmicutes Rare vr
Paenibacillus glucanolyticus Firmicutes Rare neg
Paenibacillus graminis Firmicutes Unlikely + + + d +
Paenibacillus ihuae Firmicutes Rare +
Paenibacillus ihumii Firmicutes Rare neg + + + neg +
Paenibacillus illinoisensis Firmicutes Rare + + +
Paenibacillus jamilae Firmicutes Rare vr + + +
Paenibacillus kribbensis Firmicutes Rare vr + + + + +
Paenibacillus lactis Firmicutes Rare neg + + neg +
Paenibacillus larvae Firmicutes Rare + neg neg neg neg
Paenibacillus lautus Firmicutes Rare vr + + + +
Paenibacillus macerans Firmicutes Rare + + d + d +
Paenibacillus motobuensis Firmicutes Rare neg
Paenibacillus mucilaginosus Firmicutes Unlikely neg
Paenibacillus naphthalenovorans Firmicutes Unlikely + neg neg neg
Paenibacillus odorifer Firmicutes Unlikely +
Paenibacillus pabuli Firmicutes Rare +
Paenibacillus pasadenensis Firmicutes Rare +
Paenibacillus phocaensis Firmicutes Rare neg + + + +
Paenibacillus polymyxa Firmicutes Rare neg + + + + + +
Paenibacillus provencensis Firmicutes Rare neg + + + neg +
Paenibacillus pueri Firmicutes Rare + neg + neg neg neg
Paenibacillus rhizosphaerae Firmicutes Unlikely + +
Paenibacillus riograndensis Firmicutes Unlikely vr
Paenibacillus rubinfantis Firmicutes Rare neg
Paenibacillus sabinae Firmicutes Rare +
Paenibacillus senegalensis Firmicutes Rare neg + +
Paenibacillus senegalimassiliensis Firmicutes Rare vr
Paenibacillus stellifer Firmicutes Unlikely +
Paenibacillus thiaminolyticus Firmicutes Unlikely +
Paenibacillus timonensis Firmicutes Rare + + + + neg +
Paenibacillus tuaregi Firmicutes Rare vr
Paenibacillus typhae Firmicutes Rare + + + + + +
Paenibacillus urinalis Firmicutes Rare neg + + neg neg +
Paenibacillus xylanilyticus Firmicutes Rare +
Paeniclostridium ghonii Firmicutes Rare +
Paeniclostridium sordellii Firmicutes Minor + neg
Paenisporosarcina quisquiliarum Firmicutes Unlikely +
Paludibacter jiangxiensis Bacteroidetes Rare neg +
Paludibacter propionicigenes Bacteroidetes Unlikely neg
Paludibaculum fermentans Acidobacteria Unlikely neg
Paludicola psychrotolerans Firmicutes Rare +
Pannonibacter phragmitetus Proteobacteria Unlikely neg +
Pantoea agglomerans Proteobacteria Minor neg +
Pantoea conspicua Proteobacteria Rare neg
Pantoea eucalypti Proteobacteria Rare neg
Pantoea rodasii Proteobacteria Unlikely neg +
Pantoea septica Proteobacteria Rare neg
Pantoea vagans Proteobacteria Rare neg
Papillibacter cinnamivorans Firmicutes Rare +
Parabacteroides bouchesdurhonensis Bacteroidetes Minor neg + neg + +
Parabacteroides chinchillae Bacteroidetes Minor neg neg
Parabacteroides distasonis Bacteroidetes Widespread neg + d neg + d
Parabacteroides faecis Bacteroidetes Rare neg
Parabacteroides goldsteinii Bacteroidetes Moderate neg neg
Parabacteroides gordonii Bacteroidetes Minor neg
Parabacteroides johnsonii Bacteroidetes Moderate neg
Parabacteroides massiliensis Bacteroidetes Rare neg + neg neg w
Parabacteroides merdae Bacteroidetes Widespread neg neg d(w) neg d(w) + neg
Parabacteroides pacaensis Bacteroidetes Rare neg neg + + neg +
Parabacteroides pekinense Bacteroidetes Rare neg +
Parabacteroides provencensis Bacteroidetes Rare neg neg + neg neg neg
Parabacteroides timonensis Bacteroidetes Minor neg
Paraburkholderia fungorum Proteobacteria Rare neg
Paraburkholderia phytofirmans Proteobacteria Unlikely neg
Paracholeplasma brassicae Tenericutes Unlikely neg
Paraclostridium benzoelyticum Firmicutes Rare +
Paraclostridium bifermentans Firmicutes Moderate +
Paracoccus aminovorans Proteobacteria Rare neg neg
Paracoccus carotinifaciens Proteobacteria Unlikely neg
Paracoccus denitrificans Proteobacteria Rare neg
Paracoccus haeundaensis Proteobacteria Unlikely neg
Paracoccus marcusii Proteobacteria Non neg
Paracoccus marinus Proteobacteria Unlikely neg
Paracoccus sphaerophysae Proteobacteria Unlikely neg
Paracoccus yeei Proteobacteria Rare neg
Paraeggerthella hongkongensis Actinobacteria Rare +
Parafannyhessea umbonata Actinobacteria Unlikely +
Paraliobacillus quinghaiensis Firmicutes Non + neg
Paramuribaculum intestinale Bacteroidetes Rare neg
Paraprevotella clara Bacteroidetes Moderate neg
Paraprevotella xylaniphila Bacteroidetes Moderate neg
Pararheinheimera texasensis Proteobacteria Rare neg
Parascardovia denticolens Actinobacteria Rare + + + + neg
Parasphingorhabdus flavimaris Proteobacteria Unlikely neg
Parasporobacterium paucivorans Firmicutes Rare neg
Parasutterella excrementihominis Proteobacteria Moderate neg
Parasutterella secunda Proteobacteria Rare neg
Paratractidigestivibacter faecalis Actinobacteria Rare +
Paremcibacter congregatus Proteobacteria Unlikely neg neg neg neg neg w
Parolsenella catena Actinobacteria Rare +
Parolsenella massiliensis Actinobacteria Rare +
Parvibacter caecicola Actinobacteria Rare +
Parvimonas micra Firmicutes Moderate + neg neg
Pasteurella aerogenes Proteobacteria Rare neg +
Pasteurella dagmatis Proteobacteria Rare neg
Pasteurella multocida Proteobacteria Rare neg neg neg neg neg
Paucilactobacillus oligofermentans Firmicutes Non + neg neg neg neg
Paucilactobacillus suebicus Firmicutes Unlikely + neg
Paucilactobacillus vaccinostercus Firmicutes Unlikely + neg neg neg d neg
Paucisalibacillus globulus Firmicutes Unlikely + + + +
Pauljensenia bouchesdurhonensis Actinobacteria Minor +
Pauljensenia cellulosilytica Actinobacteria Rare +
Pauljensenia hongkongensis Actinobacteria Rare +
Pauljensenia keddieii Actinobacteria Minor +
Pauljensenia odontolyticus Actinobacteria Rare +
Pauljensenia turicensis Actinobacteria Rare +
Pectobacterium wasabiae Proteobacteria Unlikely neg neg neg
Pediococcus acidilactici Firmicutes Rare + vr neg neg neg neg
Pediococcus claussenii Firmicutes Rare
Pediococcus damnosus Firmicutes Unlikely + + neg neg neg
Pediococcus pentosaceus Firmicutes Minor + + neg neg neg neg
Pedobacter cryoconitis Proteobacteria Non neg
Pedobacter daejeonensis Proteobacteria Unlikely neg
Pedobacter panaciterrae Bacteroidetes Unlikely neg neg
Pedobacter terricola Bacteroidetes Non neg neg
Pedomicrobium ferrugineum Proteobacteria Rare neg
Pelistega indica Proteobacteria Rare neg
Pelobacter propionicus Proteobacteria Rare neg
Pelomonas aquatica Proteobacteria Rare neg
Pelomonas puraquae Proteobacteria Rare neg
Pelomonas saccharophila Proteobacteria Rare neg
Peptacetobacter hiranonis Firmicutes Minor + neg neg neg neg neg
Peptoclostridium acidaminophilum Firmicutes Unlikely +
Peptococcus niger Firmicutes Rare +
Peptoniphilus asaccharolyticus Firmicutes Minor + neg neg
Peptoniphilus catoniae Firmicutes Rare +
Peptoniphilus colimassiliensis Firmicutes Rare + neg + neg neg neg
Peptoniphilus duerdenii Firmicutes Rare +
Peptoniphilus gorbachii Firmicutes Rare +
Peptoniphilus grossensis Firmicutes Rare +
Peptoniphilus harei Firmicutes Minor +
Peptoniphilus indolicus Firmicutes Rare +
Peptoniphilus ivorii Firmicutes Rare +
Peptoniphilus koenoeneniae Firmicutes Rare +
Peptoniphilus lacrimalis Firmicutes Minor + neg neg
Peptoniphilus obesi Firmicutes Rare +
Peptoniphilus pacaensis Firmicutes Rare + neg neg neg neg
Peptoniphilus phoceensis Firmicutes Rare + neg + neg neg neg
Peptoniphilus senegalensis Firmicutes Rare +
Peptoniphilus timonensis Firmicutes Rare +
Peptostreptococcus anaerobius Firmicutes Moderate + neg neg
Peptostreptococcus russellii Firmicutes Rare +
Peptostreptococcus stomatis Firmicutes Minor + neg neg
Peribacillus psychrosaccharolyticus Firmicutes Unlikely vr
Peribacillus simplex Firmicutes Rare vr neg neg w neg
Petrimonas mucosa Bacteroidetes Unlikely neg
Petrimonas sulfuriphila Bacteroidetes Rare neg
Petrobacter succinatimandens Proteobacteria Rare neg
Petrocella atlantisensis Firmicutes Unlikely +
Phascolarctobacterium faecium Firmicutes Minor neg
Phascolarctobacterium succinatutens Firmicutes Moderate neg
Phenylobacterium falsum Proteobacteria Unlikely neg
Phenylobacterium haematophilum Proteobacteria Rare neg
Phenylobacterium lituiforme Proteobacteria Unlikely neg
Phocaeicola barnesiae Bacteroidetes Moderate neg
Phocaeicola coprocola Bacteroidetes Widespread neg
Phocaeicola coprophilus Bacteroidetes Widespread neg
Phocaeicola dorei Bacteroidetes Widespread neg
Phocaeicola massiliensis Bacteroidetes Minor neg neg + neg neg +
Phocaeicola paurosaccharolyticus Bacteroidetes Rare neg
Phocaeicola plebeius Bacteroidetes Widespread neg
Phocaeicola salanitronis Bacteroidetes Minor neg
Phocaeicola sartorii Bacteroidetes Moderate neg
Phocaeicola vulgatus Bacteroidetes Widespread neg neg + d + + + d
Phocea massiliensis Firmicutes Minor neg
Phoenicibacter congonensis Actinobacteria Rare + + +
Phyllobacterium myrsinacearum Proteobacteria Rare neg
Pigmentiphaga kullae Proteobacteria Rare neg
Planococcus massiliensis Firmicutes Unlikely +
Planococcus rifietoensis Firmicutes Unlikely +
Planomicrobium chinense Firmicutes Unlikely +
Planomicrobium koreense Firmicutes Unlikely + neg + neg neg neg
Planomicrobium okeanokoites Firmicutes Unlikely + neg neg neg neg neg
Plesiomonas shigelloides Proteobacteria Rare neg neg
Pluralibacter gergoviae Proteobacteria Rare neg
Pontibacillus litoralis Firmicutes Rare +
Porphyromonas asaccharolytica Bacteroidetes Minor neg
Porphyromonas bennonis Bacteroidetes Rare neg
Porphyromonas cangingivalis Bacteroidetes Unlikely neg neg neg
Porphyromonas canoris Bacteroidetes Rare neg neg neg
Porphyromonas crevioricanis Bacteroidetes Unlikely neg
Porphyromonas endodontalis Bacteroidetes Minor neg
Porphyromonas gingivalis Bacteroidetes Unlikely neg
Porphyromonas levii Bacteroidetes Rare neg neg neg neg
Porphyromonas macacae Bacteroidetes Rare neg neg neg
Porphyromonas somerae Bacteroidetes Minor neg
Porphyromonas uenonis Bacteroidetes Minor neg
Pragia fontium Proteobacteria Rare neg neg neg
Prevotella albensis Bacteroidetes Rare neg + neg
Prevotella amnii Bacteroidetes Rare neg
Prevotella aurantiaca Bacteroidetes Rare neg
Prevotella baroniae Bacteroidetes Rare neg
Prevotella bergensis Bacteroidetes Moderate neg
Prevotella bivia Bacteroidetes Moderate neg neg neg + +
Prevotella brevis Bacteroidetes Minor neg + w
Prevotella bryantii Bacteroidetes Rare neg + + +
Prevotella buccae Bacteroidetes Minor neg + +
Prevotella buccalis Bacteroidetes Minor neg
Prevotella conceptionensis Bacteroidetes Rare neg +
Prevotella copri Bacteroidetes Widespread neg
Prevotella corporis Bacteroidetes Moderate neg neg neg + neg + neg
Prevotella dentalis Bacteroidetes Minor neg
Prevotella dentasini Bacteroidetes Rare neg
Prevotella denticola Bacteroidetes Minor neg neg d + + + neg
Prevotella disiens Bacteroidetes Minor neg neg neg + +
Prevotella enoeca Bacteroidetes Rare neg neg + neg + neg +
Prevotella falsenii Bacteroidetes Rare
Prevotella fusca Bacteroidetes Unlikely neg
Prevotella herbatica Bacteroidetes Unlikely neg +
Prevotella histicola Bacteroidetes Rare neg
Prevotella ihumii Bacteroidetes Rare neg neg neg neg neg neg
Prevotella intermedia Bacteroidetes Minor neg neg neg + d(+) + neg
Prevotella jejuni Bacteroidetes Rare neg
Prevotella lascolaii Bacteroidetes Minor neg + neg
Prevotella loescheii Bacteroidetes Rare neg neg d + + + neg
Prevotella maculosa Bacteroidetes Rare neg
Prevotella marseillensis Bacteroidetes Rare neg + + + + +
Prevotella marshii Bacteroidetes Rare neg
Prevotella melaninogenica Bacteroidetes Moderate neg neg neg + d(+) + neg
Prevotella merdae Bacteroidetes Rare neg
Prevotella micans Bacteroidetes Rare neg
Prevotella multiformis Bacteroidetes Rare neg
Prevotella multisaccharivorax Bacteroidetes Minor neg
Prevotella nanceiensis Bacteroidetes Rare neg neg
Prevotella nigrescens Bacteroidetes Minor neg neg neg + d + neg
Prevotella oralis Bacteroidetes Minor neg d(+)
Prevotella oris Bacteroidetes Moderate neg +
Prevotella oryzae Bacteroidetes Unlikely neg
Prevotella oulorum Bacteroidetes Rare neg + + + neg
Prevotella pallens Bacteroidetes Rare neg neg
Prevotella paludivivens Bacteroidetes Rare neg
Prevotella phocaeensis Bacteroidetes Rare neg neg + neg neg neg
Prevotella pleuritidis Bacteroidetes Rare neg
Prevotella rara Bacteroidetes Rare neg
Prevotella rectalis Bacteroidetes Rare neg neg neg neg neg neg
Prevotella ruminicola Bacteroidetes Minor neg neg + + +
Prevotella saccharolytica Bacteroidetes Rare neg
Prevotella salivae Bacteroidetes Rare neg
Prevotella scopos Bacteroidetes Unlikely neg
Prevotella seregens Bacteroidetes Rare
Prevotella shahii Bacteroidetes Rare neg
Prevotella stercorea Bacteroidetes Moderate neg
Prevotella timonensis Bacteroidetes Minor neg w
Prevotella veroralis Bacteroidetes Minor neg neg d(neg) + + + d(neg)
Prevotellamassilia timonensis Bacteroidetes Minor neg
Priestia flexa Firmicutes Rare vr
Priestia koreensis Firmicutes Unlikely +
Priestia megaterium Firmicutes Rare + d(w) + + +
Prochlorococcus marinus Cyanobacteria Rare neg
Prolixibacter bellariivorans Bacteroidetes Unlikely neg + +
Propionibacterium acidifaciens Actinobacteria Rare +
Propionibacterium freudenreichii Actinobacteria Rare + neg neg neg neg
Propionimicrobium lymphophilum Actinobacteria Rare neg neg neg neg +
Prosthecobacter fluviatilis Verrucomicrobia Rare neg
Proteiniphilum saccharofermentans Bacteroidetes Unlikely neg
Proteus mirabilis Proteobacteria Moderate neg neg
Proteus penneri Proteobacteria Rare neg neg
Proteus vulgaris Proteobacteria Rare neg +
Provencibacterium massiliense Firmicutes Moderate neg
Providencia alcalifaciens Proteobacteria Minor neg neg neg
Providencia heimbachae Proteobacteria Rare neg neg neg neg
Providencia rettgeri Proteobacteria Minor neg +
Providencia rustigianii Proteobacteria Rare neg neg
Providencia stuartii Proteobacteria Rare neg neg neg
Pseudarthrobacter oxydans Actinobacteria Rare +
Pseudarthrobacter polychromogenes Actinobacteria Unlikely vr
Pseudescherichia vulneris Proteobacteria Rare neg
Pseudobutyrivibrio ruminis Firmicutes Rare neg neg
Pseudobutyrivibrio xylanivorans Firmicutes Unlikely neg +
Pseudochrobactrum asaccharolyticum Proteobacteria Rare neg
Pseudochrobactrum saccharolyticum Proteobacteria Rare neg
Pseudocitrobacter anthropi Proteobacteria Rare neg
Pseudocitrobacter faecalis Proteobacteria Rare neg
Pseudoclavibacter alba Actinobacteria Rare +
Pseudoclavibacter helvolus Actinobacteria Unlikely +
Pseudoclavibacter sp. Timone Actinobacteria Rare +
Pseudoclostridium thermosuccinogenes Firmicutes Unlikely neg
Pseudodesulfovibrio aespoeensis Proteobacteria Unlikely neg
Pseudodesulfovibrio indicus Proteobacteria Unlikely neg
Pseudoflavonifractor capillosus Firmicutes Moderate neg neg w neg
Pseudoglutamicibacter albus Actinobacteria Rare +
Pseudoglutamicibacter cumminsii Actinobacteria Unlikely + neg
Pseudomonas aeruginosa Proteobacteria Rare neg neg
Pseudomonas alcaligenes Proteobacteria Non neg
Pseudomonas alcaliphila Proteobacteria Rare neg
Pseudomonas asiatica Proteobacteria Rare neg
Pseudomonas asplenii Proteobacteria Unlikely neg neg neg neg neg neg
Pseudomonas boreopolis Proteobacteria Non neg
Pseudomonas caricapapayae Proteobacteria Non neg
Pseudomonas chlororaphis Proteobacteria Non neg
Pseudomonas citronellolis Proteobacteria Rare neg neg
Pseudomonas fluorescens Proteobacteria Unlikely neg neg neg neg neg
Pseudomonas fragi Proteobacteria Rare neg
Pseudomonas fulva Proteobacteria Rare neg
Pseudomonas gessardii Proteobacteria Non neg
Pseudomonas japonica Proteobacteria Non neg
Pseudomonas libanensis Proteobacteria Non neg
Pseudomonas lundensis Proteobacteria Non neg neg neg neg neg
Pseudomonas luteola Proteobacteria Unlikely neg neg
Pseudomonas massiliensis Proteobacteria Non neg +
Pseudomonas mendocina Proteobacteria Rare neg
Pseudomonas migulae Proteobacteria Non neg
Pseudomonas monteilii Proteobacteria Unlikely neg
Pseudomonas mosselii Proteobacteria Non neg
Pseudomonas nitroreducens Proteobacteria Unlikely neg
Pseudomonas oleovorans Proteobacteria Unlikely neg
Pseudomonas oryzihabitans Proteobacteria Unlikely neg neg
Pseudomonas parafulva Proteobacteria Unlikely neg
Pseudomonas protegens Proteobacteria Unlikely neg
Pseudomonas putida Biovar A Proteobacteria Rare neg neg
Pseudomonas putida Biovar B Proteobacteria Rare neg neg
Pseudomonas rhodesiae Proteobacteria Non neg
Pseudomonas saudiphocaensis Proteobacteria Rare neg
Pseudomonas straminea Proteobacteria Unlikely neg neg
Pseudomonas stutzeri Proteobacteria Unlikely neg
Pseudomonas taetrolens Proteobacteria Non neg
Pseudomonas tolaasii Proteobacteria Unlikely neg
Pseudomonas veronii Proteobacteria Rare neg
Pseudomonas weihenstephanensis Proteobacteria Unlikely neg
Pseudomonas xanthomarina Proteobacteria Non neg
Pseudomonas yamanorum Proteobacteria Unlikely neg neg neg neg neg neg
Pseudomonas zhaodongensis Proteobacteria Unlikely neg +
Pseudonocardia dioxanivorans Actinobacteria Unlikely +
Pseudoprevotella muciniphila Bacteroidetes Rare neg
Pseudopropionibacterium massiliense Actinobacteria Rare + neg neg neg neg +
Pseudoramibacter alactolyticus Firmicutes Rare + neg w neg neg
Pseudoruegeria marinistellae Proteobacteria Rare neg
Pseudoruminococcus massiliensis Firmicutes Rare neg
Pseudoxanthomonas broegbernensis Proteobacteria Unlikely neg
Pseudoxanthomonas japonensis Proteobacteria Unlikely neg
Pseudoxanthomonas mexicana Proteobacteria Rare neg
Pseudoxanthomonas spadix Proteobacteria Rare neg neg neg neg
Pseudoxanthomonas suwonensis Proteobacteria Rare neg
Pseudoxanthomonas taiwanensis Proteobacteria Rare neg
Psychrobacter alimentarius Proteobacteria Unlikely +
Psychrobacter arenosus Proteobacteria Unlikely neg
Psychrobacter cibarius Proteobacteria Unlikely neg
Psychrobacter faecalis Proteobacteria Unlikely neg
Psychrobacter fulvigenes Proteobacteria Rare neg
Psychrobacter maritimus Proteobacteria Unlikely neg
Psychrobacter namhaensis Proteobacteria Unlikely neg
Psychrobacter phenylpyruvicus Proteobacteria Rare neg
Psychrobacter pulmonis Proteobacteria Unlikely neg neg
Pusillimonas faecalis Firmicutes Rare neg
Pygmaiobacter massiliensis Firmicutes Minor +
Pyramidobacter piscolens Synergistetes Minor neg
Rahnella aquatilis Proteobacteria Unlikely neg
Ralstonia mannitolilytica Proteobacteria Rare neg neg
Ralstonia pickettii Biovar Va-1&2 Proteobacteria Rare neg neg
Raoultella ornithinolytica Proteobacteria Minor neg +
Raoultella planticola Proteobacteria Rare neg + + neg neg neg
Raoultella terrigena Proteobacteria Rare neg + + neg w neg
Raoultibacter massiliensis Actinobacteria Rare + + + neg +
Raoultibacter timonensis Actinobacteria Rare + + + neg
Rheinheimera perlucida Proteobacteria Unlikely neg neg neg + neg +
Rhizobium metallidurans Proteobacteria Unlikely neg
Rhizorhabdus wittichii Proteobacteria Unlikely neg neg
Rhodanobacter ginsenosidimutans Proteobacteria Unlikely neg
Rhodococcus erythropolis Actinobacteria Rare + neg neg neg
Rhodococcus hoagii Actinobacteria Rare +
Rhodococcus jostii Actinobacteria Non +
Rhodococcus opacus Actinobacteria Unlikely +
Rhodococcus qingshengii Actinobacteria Unlikely +
Rhodococcus rhodochrous Actinobacteria Rare + neg neg
Rhodoplanes serenus Proteobacteria Unlikely neg
Rhodothermus marinus Bacteroidetes Non neg
Riemerella columbina Bacteroidetes Rare neg
Rikenella microfusus Bacteroidetes Rare neg neg neg neg neg neg
Risungbinella massiliensis Firmicutes Rare + neg neg neg neg
Robertmurraya andreesenii Firmicutes Unlikely +
Robertmurraya kyonggiensis Firmicutes Rare + + + neg neg +
Robertmurraya massiliosenegalensis Firmicutes Rare + +
Robinsoniella peoriensis Firmicutes Rare + +
Romboutsia hominis Firmicutes Rare + neg neg neg
Romboutsia ilealis Firmicutes Rare vr neg neg neg w neg
Romboutsia lituseburensis Firmicutes Minor + neg neg neg neg
Romboutsia maritimum Firmicutes Rare +
Romboutsia timonensis Firmicutes Moderate +
Romboutsia weinsteinii Firmicutes Rare +
Roseburia faecis Firmicutes Widespread vr
Roseburia hominis Firmicutes Widespread vr
Roseburia intestinalis Firmicutes Widespread vr neg + +
Roseburia inulinivorans Firmicutes Widespread vr
Roseobacter denitrificans Proteobacteria Non neg
Roseomonas gilardii Proteobacteria Rare neg
Roseomonas mucosa Proteobacteria Rare neg
Rossellomorea aquimaris Firmicutes Unlikely vr neg neg + neg +
Rossellomorea marisflavi Firmicutes Rare vr neg + neg neg neg
Rossellomorea vietnamensis Firmicutes Rare + neg + + + +
Rothia aeria Actinobacteria Minor + neg neg
Rothia dentocariosa Actinobacteria Minor + neg neg neg neg
Rothia halotolerans Actinobacteria Unlikely + + + neg neg neg
Rothia koreensis Actinobacteria Rare +
Rothia kristinae Actinobacteria Rare +
Rothia mucilaginosa Actinobacteria Moderate + neg neg neg neg
Rothia terrae Actinobacteria Rare + neg
Rubeoparvulum massiliense Firmicutes Rare neg neg neg neg neg neg
Rubinisphaera brasiliensis Planctomycetes Non neg
Rubneribacter badeniensis Actinobacteria Minor +
Rubrobacter xylanophilus Actinobacteria Non +
Rudanella lutea Bacteroidetes Unlikely neg
Ruminiclostridium cellobioparum Firmicutes Rare vr
Ruminiclostridium cellulolyticum Firmicutes Unlikely + neg + neg neg +
Ruminiclostridium herbifermentans Firmicutes Unlikely vr + +
Ruminiclostridium josui Firmicutes Rare + +
Ruminococcus albus Firmicutes Moderate + + neg neg neg +
Ruminococcus bicirculans Firmicutes Moderate +
Ruminococcus bovis Firmicutes Unlikely + neg + + +
Ruminococcus bromii Firmicutes Widespread + neg neg d(+) neg d(+) neg
Ruminococcus callidus Firmicutes Widespread + vr neg neg d(neg) + +
Ruminococcus champanellensis Firmicutes Moderate + + neg +
Ruminococcus flavefaciens Firmicutes Moderate + + d(neg) neg neg +
Ruminococcus gauvreauii Firmicutes Minor + neg neg neg neg
Ruminococcus gnavus Firmicutes Widespread + neg neg
Ruminococcus lactaris Firmicutes Widespread + neg neg neg neg
Ruminococcus phoceensis Firmicutes Rare +
Ruminococcus torques Firmicutes Widespread + neg neg neg neg
Rummeliibacillus pycnus Firmicutes Unlikely +
Rummeliibacillus stabekisii Firmicutes Rare +
Rummeliibacillus suwonensis Firmicutes Rare +
Ruoffia tabacinasalis Firmicutes Rare +
Ruthenibacterium lactatiformans Firmicutes Moderate neg
Saccharibacillus brassicae Firmicutes Unlikely +
Saccharofermentans acetigenes Firmicutes Non + w + neg neg +
Salimicrobium jeotgali Firmicutes Non +
Salinicoccus halodurans Firmicutes Unlikely + neg neg neg
Salinisphaera halophila Proteobacteria Non neg neg neg neg neg neg
Salinivibrio costicola Proteobacteria Rare neg
Salmonella bongori Proteobacteria Rare neg
Salmonella enterica Proteobacteria Unlikely neg neg
Salmonella enterica subsp. arizonae Proteobacteria Non neg
Salmonella enterica subsp. enterica serovar Choleraesuis Proteobacteria Unlikely neg
Salmonella enterica subsp. enterica serovar Enteritidis Proteobacteria Rare neg
Salmonella enterica subsp. enterica serovar Paratyphi A Proteobacteria Rare neg
Salmonella enterica subsp. enterica serovar Typhi Proteobacteria Rare neg
Salmonella enterica subsp. enterica serovar Typhimurium Proteobacteria Rare neg
Sanguibacter massiliensis Actinobacteria Rare +
Sarcina maxima Firmicutes Rare + neg neg
Sarcina ventriculi Firmicutes Minor + neg neg
Scardovia inopinata Actinobacteria Rare + + + d(neg) + neg
Scardovia wiggsiae Actinobacteria Minor +
Schaalia cardiffensis Actinobacteria Rare + neg neg
Schaalia hyovaginalis Actinobacteria Rare + neg
Schaalia meyeri Actinobacteria Rare + d neg d neg +
Schaalia odontolytica Actinobacteria Moderate + neg neg neg
Schaalia radingae Actinobacteria Rare + neg
Schaalia turicensis Actinobacteria Rare + neg neg
Schleiferilactobacillus harbinensis Firmicutes Unlikely + + + neg neg d
Schleiferilactobacillus perolens Firmicutes Unlikely + + + neg d d
Schleiferilactobacillus shenzhenensis Firmicutes Unlikely
Schlesneria paludicola Planctomycetes Unlikely neg
Schnuerera ultunensis Firmicutes Unlikely +
Sebaldella termitidis Fusobacteria Unlikely neg neg
Sediminibacillus massiliensis Firmicutes Rare +
Sediminispirochaeta smaragdinae Spirochaetes Unlikely neg
Selenomonas artemidis Firmicutes Rare neg neg neg neg neg neg
Selenomonas bovis Firmicutes Rare neg
Selenomonas flueggei Firmicutes Rare neg neg neg neg neg neg neg
Selenomonas infelix Firmicutes Rare neg neg neg neg neg neg neg
Selenomonas noxia Firmicutes Rare neg neg neg neg neg neg neg
Selenomonas ruminantium Firmicutes Minor neg +
Selenomonas sputigena Firmicutes Rare neg neg neg neg neg neg neg
Selenomonas timonae Firmicutes Unlikely neg
Sellimonas intestinalis Firmicutes Minor +
Senegalia massiliensis Firmicutes Rare + + neg neg +
Senegalimassilia anaerobia Actinobacteria Minor + neg neg neg neg
Senegalimassilia faecalis Actinobacteria Rare + neg neg neg neg
Serratia ficaria Proteobacteria Rare neg + neg neg neg
Serratia fonticola Proteobacteria Rare neg + neg neg
Serratia liquefaciens Proteobacteria Rare neg + neg
Serratia marcescens Proteobacteria Minor neg neg neg neg neg
Serratia odorifera Proteobacteria Rare neg neg
Serratia quinivorans Proteobacteria Rare neg neg
Serratia ureilytica Proteobacteria Rare neg neg
Sharpea azabuensis Firmicutes Rare + +
Shewanella algae Proteobacteria Unlikely neg
Shewanella carassii Proteobacteria Rare neg neg
Shewanella decolorationis Proteobacteria Rare neg
Shewanella xiamenensis Proteobacteria Rare neg
Shigella boydii Proteobacteria Rare neg
Shigella dysenteriae Proteobacteria Unlikely neg neg
Shigella flexneri Proteobacteria Minor neg neg
Shigella sonnei Proteobacteria Minor neg neg
Shuttleworthia satelles Firmicutes Rare +
Silanimonas lenta Proteobacteria Non neg +
Skermanella aerolata Proteobacteria Unlikely neg neg neg neg neg neg
Slackia equolifaciens Actinobacteria Rare +
Slackia exigua Actinobacteria Rare + neg neg
Slackia faecicanis Actinobacteria Rare + neg
Slackia heliotrinireducens Actinobacteria Rare +
Slackia isoflavoniconvertens Actinobacteria Rare +
Slackia piriformis Actinobacteria Minor +
Sneathia sanguinegens Fusobacteria Rare neg neg neg neg
Sneathia vaginalis Fusobacteria Rare neg +
Sodaliphilus pleomorphus Bacteroidetes Rare neg
Soleaferrea massiliensis Firmicutes Rare +
Solibacillus silvestris Firmicutes Unlikely +
Solibaculum mannosilyticum Firmicutes Rare vr
Solobacterium moorei Firmicutes Minor + neg neg neg neg neg
Sorangium cellulosum Proteobacteria Rare neg
Sphaerotilus natans Proteobacteria Unlikely neg
Sphingobacterium alimentarium Bacteroidetes Unlikely neg +
Sphingobacterium faecium Bacteroidetes Rare neg + d + +
Sphingobacterium mizutaii Bacteroidetes Unlikely neg neg neg
Sphingobacterium multivorum Bacteroidetes Rare neg + + +
Sphingobacterium nematocida Bacteroidetes Unlikely neg + + + neg +
Sphingobacterium siyangense Bacteroidetes Rare neg
Sphingobacterium spiritivorum Bacteroidetes Rare neg + + d d
Sphingobacterium thalpophilum Bacteroidetes Unlikely neg
Sphingobium xenophagum Proteobacteria Unlikely neg
Sphingomonas adhaesiva Proteobacteria Unlikely neg neg
Sphingomonas aerolata Proteobacteria Non neg
Sphingomonas aestuarii Proteobacteria Unlikely neg
Sphingomonas azotifigens Proteobacteria Rare neg neg
Sphingomonas bisphenolicum Proteobacteria Unlikely neg
Sphingomonas echinoides Proteobacteria Unlikely neg
Sphingomonas glacialis Proteobacteria Unlikely neg neg
Sphingomonas hankookensis Proteobacteria Rare neg
Sphingomonas koreensis Proteobacteria Unlikely neg
Sphingomonas melonis Proteobacteria Rare neg neg
Sphingomonas panni Proteobacteria Rare neg
Sphingomonas paucimobilis Proteobacteria Rare neg neg
Sphingomonas pseudosanguinis Proteobacteria Rare neg
Sphingomonas sinipercae Proteobacteria Unlikely neg neg + neg
Sphingomonas yabuuchiae Proteobacteria Rare neg
Sphingopyxis bauzanensis Proteobacteria Unlikely neg neg neg
Spiribacter roseus Proteobacteria Non neg
Spirochaeta coccoides Spirochaetes Rare neg
Spirochaeta thermophila Spirochaetes Non neg
Spirosoma linguale Bacteroidetes Unlikely neg +
Sporobacter termitidis Firmicutes Rare +
Sporolactobacillus laevolacticus Firmicutes Unlikely + + w
Sporolactobacillus nakayamae subsp. racemicus Firmicutes Rare + + d
Sporomusa termitida Firmicutes Unlikely neg
Sporosarcina aquimarina Firmicutes Non + neg + neg neg neg
Sporosarcina koreensis Firmicutes Unlikely +
Sporosarcina luteola Firmicutes Rare vr neg neg neg neg neg
Sporosarcina siberiensis Firmicutes Unlikely + + + + neg
Stackebrandtia nassauensis Actinobacteria Unlikely + +
Staphylococcus arlettae Firmicutes Rare + neg
Staphylococcus aureus subsp. aureus Firmicutes Minor + neg neg
Staphylococcus auricularis Firmicutes Rare +
Staphylococcus capitis subsp. capitis Firmicutes Rare + neg neg
Staphylococcus caprae Firmicutes Rare + neg
Staphylococcus carnosus Firmicutes Rare + neg neg neg neg
Staphylococcus cohnii subsp. cohnii Firmicutes Rare + neg neg
Staphylococcus condimenti Firmicutes Rare +
Staphylococcus devriesei Firmicutes Rare + neg
Staphylococcus epidermidis Firmicutes Widespread + neg neg
Staphylococcus equorum subsp. equorum Firmicutes Rare + neg
Staphylococcus gallinarum Firmicutes Rare + +
Staphylococcus haemolyticus Firmicutes Minor + neg
Staphylococcus hominis subsp. hominis Firmicutes Minor + neg
Staphylococcus hyicus Firmicutes Rare +
Staphylococcus intermedius Firmicutes Rare + neg
Staphylococcus kloosii Firmicutes Rare + neg
Staphylococcus lugdunensis Firmicutes Rare + neg neg
Staphylococcus nepalensis Firmicutes Rare + neg neg neg neg
Staphylococcus pasteuri Firmicutes Minor +
Staphylococcus petrasii Firmicutes Rare + neg neg neg neg
Staphylococcus pettenkoferi Firmicutes Rare + neg
Staphylococcus pseudintermedius Firmicutes Rare + neg neg neg neg neg
Staphylococcus saccharolyticus Firmicutes Rare + neg neg neg
Staphylococcus saprophyticus subsp. saprophyticus Firmicutes Rare + neg
Staphylococcus schleiferi subsp. schleiferi Firmicutes Rare + neg
Staphylococcus simiae Firmicutes Rare +
Staphylococcus simulans Firmicutes Rare + neg
Staphylococcus succinus subsp. succinus Firmicutes Unlikely +
Staphylococcus warneri Firmicutes Minor + neg
Staphylococcus xylosus Firmicutes Rare + neg
Starkeya novella Proteobacteria Unlikely neg
Stenotrophomonas acidaminiphila Proteobacteria Unlikely neg
Stenotrophomonas bentonitica Proteobacteria Unlikely neg
Stenotrophomonas maltophilia Proteobacteria Minor neg neg
Stenotrophomonas rhizophila Proteobacteria Rare neg
Stomatobaculum longum Firmicutes Minor vr
Streptobacillus hongkongensis Fusobacteria Rare neg
Streptobacillus moniliformis Fusobacteria Unlikely neg
Streptococcus acidominimus Firmicutes Unlikely + neg + neg
Streptococcus agalactiae Firmicutes Minor + d(neg) neg neg neg neg neg
Streptococcus alactolyticus Firmicutes Rare + d neg neg neg d(neg)
Streptococcus anginosus Firmicutes Widespread + + neg neg neg neg
Streptococcus anginosus subsp. whileyi Firmicutes Rare + d neg neg
Streptococcus australis Firmicutes Minor + neg neg neg neg neg
Streptococcus caballi Firmicutes Rare + + + +
Streptococcus canis Firmicutes Unlikely + neg d(neg) neg +
Streptococcus castoreus Firmicutes Rare + neg neg +
Streptococcus constellatus subsp. constellatus Firmicutes Minor + d(neg) d(neg) neg neg w(+)
Streptococcus cristatus Firmicutes Minor + neg neg neg neg neg
Streptococcus danieliae Firmicutes Rare + neg neg +
Streptococcus didelphis Firmicutes Rare + neg neg d
Streptococcus downei Firmicutes Rare + neg + neg
Streptococcus dysgalactiae Firmicutes Rare + vr vr neg +
Streptococcus dysgalactiae subsp. equisimilis Firmicutes Unlikely + d neg +
Streptococcus equi subsp. equi Firmicutes Rare + + + neg +
Streptococcus equinus Firmicutes Moderate + + neg + d(+) + +
Streptococcus ferus Firmicutes Rare + + + + d +
Streptococcus gallolyticus subsp. gallolyticus Firmicutes Minor + + vr + + +
Streptococcus gordonii Firmicutes Minor + + neg + neg d(+) vr
Streptococcus gwangjuense Firmicutes Unlikely +
Streptococcus henryi Firmicutes Rare + + + +
Streptococcus hyovaginalis Firmicutes Rare + neg neg neg neg
Streptococcus ilei Firmicutes Unlikely + neg + + neg +
Streptococcus infantarius Firmicutes Minor + neg neg + neg +
Streptococcus infantarius subsp. infantarius Firmicutes Minor + + neg +
Streptococcus infantis Firmicutes Minor + neg neg neg neg vr
Streptococcus intermedius Firmicutes Moderate + d(neg) d(neg) neg neg vr
Streptococcus koreensis Firmicutes Unlikely + neg neg neg
Streptococcus lactarius Firmicutes Rare + neg
Streptococcus lutetiensis Firmicutes Minor + + neg neg neg d(+)
Streptococcus macedonicus Firmicutes Rare + neg neg neg neg
Streptococcus merionis Firmicutes Rare + neg neg + +
Streptococcus mitis Firmicutes Moderate + neg neg neg neg neg neg
Streptococcus mutans Firmicutes Moderate + vr neg + neg + neg
Streptococcus oralis Firmicutes Minor + vr neg neg neg neg neg
Streptococcus oralis subsp. tigurinus Firmicutes Rare + neg neg +
Streptococcus orisratti Firmicutes Rare + + + + +
Streptococcus ovis Firmicutes Rare + +
Streptococcus pantholopis Firmicutes Rare + + neg neg neg
Streptococcus parasanguinis Firmicutes Widespread + vr neg neg neg vr
Streptococcus parasuis Firmicutes Rare + +
Streptococcus parauberis Firmicutes Rare + d(+) neg neg d(+) d(+)
Streptococcus pasteurianus Firmicutes Minor + neg neg neg
Streptococcus periodonticum Firmicutes Unlikely + neg neg neg
Streptococcus peroris Firmicutes Rare + neg neg neg neg
Streptococcus pluranimalium Firmicutes Unlikely + d neg neg neg
Streptococcus plurextorum Firmicutes Rare + neg neg neg neg neg
Streptococcus pneumoniae Firmicutes Minor + neg neg vr + d(+)
Streptococcus porci Firmicutes Rare + neg neg + neg +
Streptococcus pseudopneumoniae Firmicutes Minor + neg neg neg vr
Streptococcus pseudoporcinus Firmicutes Rare +
Streptococcus pyogenes Firmicutes Minor + neg vr d(+) neg neg
Streptococcus rubneri Firmicutes Rare + neg neg neg neg neg
Streptococcus salivarius Firmicutes Widespread + + neg + neg d neg
Streptococcus sanguinis Firmicutes Moderate + d neg d(+) neg d(+) d
Streptococcus sinensis Firmicutes Rare + neg neg +
Streptococcus sobrinus Firmicutes Minor + neg neg neg neg
Streptococcus suis Firmicutes Rare + neg neg + +
Streptococcus thermophilus Firmicutes Widespread + neg neg neg
Streptococcus thoraltensis Firmicutes Rare + d(+) neg neg + +
Streptococcus timonensis Firmicutes Minor + neg neg neg neg w
Streptococcus uberis Firmicutes Rare + + neg d(neg) + vr
Streptococcus vestibularis Firmicutes Moderate + + neg neg neg neg
Streptococcus viridans Firmicutes Rare + neg
Streptomyces albus Actinobacteria Unlikely +
Streptomyces flavogriseus Actinobacteria Unlikely +
Streptomyces hygroscopicus Actinobacteria Unlikely +
Streptomyces koyangensis Actinobacteria Rare +
Streptomyces lividans Actinobacteria Unlikely +
Streptomyces massiliensis Actinobacteria Unlikely +
Streptomyces misionensis Actinobacteria Rare +
Streptomyces specialis Actinobacteria Unlikely +
Streptomyces thermoviolaceus Actinobacteria Rare + neg
Streptomyces thermovulgaris Actinobacteria Unlikely +
Streptomyces violaceusniger Actinobacteria Unlikely +
Streptosporangium roseum Actinobacteria Unlikely +
Subdoligranulum formicile Firmicutes Rare neg
Subdoligranulum variabile Firmicutes Moderate neg
Succinatimonas hippei Proteobacteria Minor neg
Succinivibrio dextrinosolvens Proteobacteria Rare neg neg neg neg w neg
Sulfurospirillum deleyianum Proteobacteria Rare neg
Sutcliffiella cohnii Firmicutes Unlikely + neg neg
Sutterella faecalis Proteobacteria Rare neg
Sutterella massiliensis Proteobacteria Rare neg
Sutterella megalosphaeroides Proteobacteria Rare neg
Sutterella parvirubra Proteobacteria Minor neg
Sutterella seckii Proteobacteria Rare neg
Sutterella stercoricanis Proteobacteria Rare neg
Sutterella timonensis Proteobacteria Rare neg
Sutterella wadsworthensis Proteobacteria Widespread neg neg neg
Symbiobacterium thermophilum Firmicutes Unlikely neg
Symbiobacterium toebii Firmicutes Unlikely neg
Syntrophobotulus glycolicus Firmicutes Unlikely neg
Syntrophococcus sucromutans Firmicutes Rare neg
Syntrophomonas zehnderi Firmicutes Rare vr
Tannerella forsythia Bacteroidetes Minor neg + neg
Tannerella serpentiformis Bacteroidetes Unlikely neg
Taonella mepensis Proteobacteria Unlikely neg
Tatumella ptyseos Proteobacteria Rare neg neg neg neg
Tepidanaerobacter acetatoxydans Firmicutes Rare vr
Tepiditoga spiralis Thermotogae Unlikely neg
Terrahaemophilus aromaticivorans Proteobacteria Rare neg
Terribacillus aidingensis Firmicutes Rare + + + neg neg neg
Terribacillus halophilus Firmicutes Unlikely + neg
Terrisporobacter glycolicus Firmicutes Minor +
Terrisporobacter mayombei Firmicutes Rare + + + +
Terrisporobacter othiniensis Firmicutes Rare +
Terrisporobacter petrolearius Firmicutes Rare +
Tessaracoccus massiliensis Actinobacteria Rare +
Tetragenococcus halophilus Firmicutes Unlikely + + neg neg
Tetragenococcus koreensis Firmicutes Rare + + neg neg neg
Tetragenococcus solitarius Firmicutes Rare + + neg neg
Thalassobacillus devorans Firmicutes Non +
Thauera terpenica Proteobacteria Rare neg
Thermaerobacter marianensis Firmicutes Non vr
Thermoanaerobacterium thermosaccharolyticum Firmicutes Rare neg + + neg + +
Thermobacillus composti Firmicutes Unlikely neg
Thermobispora bispora Actinobacteria Unlikely +
Thermoclostridium stercorarium Firmicutes Unlikely neg neg + + + neg +
Thermolithobacter ferrireducens Firmicutes Non +
Thermomonas carbonis Proteobacteria Unlikely neg
Thermomonospora curvata Actinobacteria Unlikely +
Thermophilibacter immobilis Actinobacteria Unlikely +
Thermophilibacter mediterraneus Actinobacteria Rare +
Thermophilibacter provencensis Actinobacteria Minor +
Thermus scotoductus Deinococcus-Thermus Unlikely neg
Thiomonas islandica Proteobacteria Unlikely neg
Thomasclavelia saccharogumia Firmicutes Rare +
Thomasclavelia spiroformis Firmicutes Moderate + d w(neg) neg + neg
Tidjanibacter inops Bacteroidetes Moderate
Tidjanibacter massiliensis Bacteroidetes Rare neg
Timonella senegalensis Actinobacteria Rare + +
Tissierella praeacuta Firmicutes Rare +
Trabulsiella guamensis Proteobacteria Rare neg +
Tractidigestivibacter scatoligenes Actinobacteria Rare +
Traorella massiliensis Firmicutes Rare neg neg neg neg neg
Treponema berlinense Spirochaetes Rare neg
Treponema brennaborense Spirochaetes Unlikely neg
Treponema denticola Spirochaetes Rare neg
Treponema medium Spirochaetes Unlikely neg +
Treponema parvum Spirochaetes Unlikely neg
Treponema pectinovorum Spirochaetes Rare neg neg neg neg neg
Treponema pedis Spirochaetes Unlikely neg
Treponema peruense Spirochaetes Rare neg
Treponema phagedenis Spirochaetes Unlikely neg
Treponema primitia Spirochaetes Unlikely neg
Treponema ruminis Spirochaetes Unlikely neg
Treponema socranskii Spirochaetes Unlikely neg neg + + neg +
Treponema succinifaciens Spirochaetes Rare neg neg neg +
Treponema vincentii Spirochaetes Rare neg
Tropheryma whipplei Actinobacteria Unlikely neg
Trueperella bernardiae Actinobacteria Rare + neg neg d(+) +
Trueperella pyogenes Actinobacteria Rare + neg + neg + +
Tsukamurella pulmonis Actinobacteria Unlikely + neg
Tumebacillus avium Firmicutes Unlikely + +
Tumebacillus permanentifrigoris Firmicutes Unlikely +
Turicibacter sanguinis Firmicutes Moderate +
Turicimonas muris Proteobacteria Rare neg
Tyzzerella nexilis Firmicutes Widespread +
Ureaplasma parvum Tenericutes Rare unk
Ureaplasma urealyticum Tenericutes Rare unk
Ureibacillus massiliensis Firmicutes Rare neg neg
Ureibacillus suwonensis Firmicutes Unlikely neg
Ureibacillus thermosphaericus Firmicutes Non neg neg neg neg neg
Urinicoccus timonensis Firmicutes Rare + neg neg neg neg neg
Urmitella timonensis Firmicutes Rare +
Uruburuella suis Proteobacteria Rare neg
Vaginimicrobium propionicum Actinobacteria Unlikely +
Vagococcus carniphilus Firmicutes Rare + neg neg
Vagococcus fluvialis Firmicutes Rare + + neg neg neg
Vagococcus lutrae Firmicutes Rare + neg
Vagococcus penaei Firmicutes Rare + neg
Vagococcus teuberi Firmicutes Rare + neg
Vampirovibrio chlorellavorus Cyanobacteria Unlikely neg
Varibaculum cambriense Actinobacteria Rare + neg neg neg
Varibaculum timonense Actinobacteria Rare +
Variovorax boronicumulans Proteobacteria Rare neg
Variovorax ginsengisoli Proteobacteria Unlikely neg
Variovorax paradoxus Proteobacteria Unlikely neg
Veillonella atypica Firmicutes Widespread neg neg neg
Veillonella denticariosi Firmicutes Rare neg
Veillonella dispar Firmicutes Moderate neg
Veillonella infantium Firmicutes Rare neg
Veillonella magna Firmicutes Rare neg
Veillonella montpellierensis Firmicutes Rare neg neg neg
Veillonella nakazawae Firmicutes Rare neg
Veillonella parvula Firmicutes Widespread neg neg neg
Veillonella ratti Firmicutes Rare neg
Veillonella rodentium Firmicutes Unlikely neg
Veillonella rogosae Firmicutes Minor neg
Veillonella tobetsuensis Firmicutes Minor neg
Vescimonas coprocola Firmicutes Rare neg
Vescimonas fastidiosa Firmicutes Rare neg
Vibrio alginolyticus Proteobacteria Rare neg
Vibrio cholerae Proteobacteria Unlikely neg
Vibrio cincinnatiensis Proteobacteria Rare neg
Vibrio fluvialis Proteobacteria Rare neg +
Vibrio furnissii Proteobacteria Rare neg neg
Vibrio metoecus Proteobacteria Rare neg
Vibrio metschnikovii Proteobacteria Rare neg
Vibrio mimicus Proteobacteria Rare neg neg
Vibrio natriegens Proteobacteria Rare neg
Vibrio neptunius Proteobacteria Unlikely neg neg
Vibrio parahaemolyticus Proteobacteria Rare neg
Vibrio proteolyticus Proteobacteria Rare neg
Vibrio rumoiensis Proteobacteria Unlikely neg
Vibrio vulnificus Proteobacteria Rare neg
Victivallis vadensis Lentisphaerae Minor neg
Virgibacillus dakarensis Firmicutes Rare +
Virgibacillus dokdonensis Firmicutes Rare vr neg neg
Virgibacillus doumboii Firmicutes Rare + neg
Virgibacillus halodenitrificans Firmicutes Rare vr + neg
Virgibacillus ihumii Firmicutes Rare + neg + neg neg neg
Virgibacillus massiliensis Firmicutes Rare +
Virgibacillus ndiopensis Firmicutes Rare + neg + neg neg
Virgibacillus pantothenticus Firmicutes Rare + + neg
Virgibacillus profundi Firmicutes Unlikely vr neg
Virgibacillus proomii Firmicutes Rare + d d neg d
Virgibacillus salexigens Firmicutes Unlikely + neg
Virgibacillus senegalensis Firmicutes Non +
Virgibacillus siamensis Firmicutes Unlikely +
Vitreoscilla massiliensis Proteobacteria Rare neg
Vitreoscilla stercoraria Proteobacteria Rare neg
Weeksella virosa Firmicutes Rare neg
Weissella cibaria Firmicutes Minor + + neg + neg neg neg
Weissella confusa Firmicutes Minor + + neg neg neg neg
Weissella paramesenteroides Firmicutes Minor + neg neg neg neg
Weissella viridescens Firmicutes Minor +
Weizmannia coagulans Firmicutes Rare + d neg neg +
Winkia neuii Actinobacteria Rare + d d
Wolinella succinogenes Proteobacteria Rare neg
Xanthomonas massiliensis Proteobacteria Unlikely neg
Xylanimonas cellulosilytica Actinobacteria Rare + +
Yangia pacifica Proteobacteria Non neg
Yersinia aldovae Proteobacteria Rare neg neg +
Yersinia aleksiciae Proteobacteria Rare neg +
Yersinia alsatica Proteobacteria Rare neg neg + neg neg neg
Yersinia artesiana Proteobacteria Rare neg neg + neg neg neg
Yersinia bercovieri Proteobacteria Rare neg +
Yersinia enterocolitica subsp. enterocolitica Proteobacteria Unlikely neg d(w) neg neg w
Yersinia frederiksenii Proteobacteria Rare neg + + neg neg w
Yersinia intermedia Proteobacteria Rare neg + + neg neg neg
Yersinia kristensenii subsp. kristensenii Proteobacteria Rare neg neg neg neg neg w
Yersinia kristensenii subsp. rochesterensis Proteobacteria Rare neg +
Yersinia massiliensis Proteobacteria Rare neg
Yersinia mollaretii Proteobacteria Rare neg
Yersinia occitanica Proteobacteria Rare neg neg neg neg neg neg
Yersinia pestis Proteobacteria Non neg
Yersinia proxima Proteobacteria Rare neg neg + neg neg neg
Yersinia pseudotuberculosis Proteobacteria Unlikely neg neg neg
Yersinia rohdei Proteobacteria Rare neg neg
Yersinia vastinensis Proteobacteria Rare neg neg + neg neg neg
Yokenella regensburgei Proteobacteria Rare neg neg
Yonghaparkia alkaliphila Actinobacteria Non +
Zunongwangia profunda Bacteroidetes Non neg neg

Click on table headings to sort. Table abbreviations: Amyg - amygdalin; Cell - cellulose; Dext - dextrin; Aesc - aesculin; Glyg - glycogen; Inul - inulin; Star - starch; Xyln - xylan;

Polyols
Bacteria Phylum Coloniser Gram Adon Dulc Eryt Glyc Inos Mann Srbt Xyll
Abiotrophia defectiva Firmicutes Minor + neg neg neg neg neg neg neg neg
Absiella argi Firmicutes Rare + neg neg neg
Absiella innocuum Firmicutes Moderate
Absiella tortuosum Firmicutes Rare + neg neg neg neg neg
Acetanaerobacterium elongatum Firmicutes Rare + neg neg neg neg neg neg
Acetatifactor muris Firmicutes Rare +
Acetitomaculum ruminis Firmicutes Rare +
Acetivibrio cellulolyticus Firmicutes Rare neg neg neg neg neg neg neg
Acetivibrio clariflavus Firmicutes Unlikely vr
Acetivibrio ethanolgignens Firmicutes Minor neg neg neg + neg
Acetivibrio saccincola Firmicutes Unlikely + neg
Acetivibrio thermocellus Firmicutes Unlikely neg
Acetoanaerobium sticklandii Firmicutes Rare + neg
Acetobacter pasteurianus Proteobacteria Unlikely neg +
Acetobacterium woodii Firmicutes Rare +
Acetomicrobium hydrogeniformans Synergistetes Unlikely neg
Achromobacter denitrificans Proteobacteria Unlikely neg neg neg neg neg neg
Achromobacter insuavis Proteobacteria Unlikely neg
Achromobacter spanius Proteobacteria Unlikely neg neg
Achromobacter xylosoxidans Proteobacteria Rare neg neg neg neg neg
Acidaminococcus fermentans Firmicutes Widespread neg neg neg neg neg neg neg vr
Acidaminococcus intestini Firmicutes Moderate neg
Acidaminococcus massiliensis Firmicutes Rare neg
Acidaminococcus provencensis Firmicutes Rare neg neg neg neg neg neg neg neg neg
Acidaminococcus timonensis Firmicutes Rare neg
Acidipropionibacterium acidipropionici Actinobacteria Rare + + + + + + + +
Acidipropionibacterium jensenii Actinobacteria Rare + + + + + + neg vr
Acidisarcina polymorpha Acidobacteria Rare neg
Acidovorax facilis Proteobacteria Rare neg neg
Acidovorax sp. strain KKS102 Proteobacteria Rare neg
Acidovorax temperans Proteobacteria Rare neg neg
Acidovorax wautersii Proteobacteria Rare neg +
Acinetobacter baumannii Proteobacteria Unlikely neg neg neg neg
Acinetobacter bereziniae Proteobacteria Unlikely neg
Acinetobacter calcoaceticus Proteobacteria Rare neg neg neg neg neg
Acinetobacter guillouiae Proteobacteria Rare neg
Acinetobacter haemolyticus Proteobacteria Unlikely neg
Acinetobacter idrijaensis Proteobacteria Rare
Acinetobacter johnsonii Proteobacteria Rare neg neg neg neg neg
Acinetobacter junii Proteobacteria Rare neg
Acinetobacter lwoffii Proteobacteria Unlikely neg neg neg neg
Acinetobacter parvus Proteobacteria Unlikely neg
Acinetobacter pittii Proteobacteria Unlikely neg neg neg neg neg
Acinetobacter radioresistens Proteobacteria Rare neg
Acinetobacter schindleri Proteobacteria Unlikely neg
Acinetobacter septicus Proteobacteria Unlikely neg
Acinetobacter towneri Proteobacteria Unlikely neg neg neg neg
Acinetobacter ursingii Proteobacteria Unlikely neg
Acinetobacter variabilis Proteobacteria Unlikely neg
Actinobacillus capsulatus Proteobacteria Rare neg neg neg neg neg + d neg
Actinobacillus minor Proteobacteria Unlikely neg neg neg neg
Actinobacillus pleuropneumoniae Proteobacteria Rare neg neg neg neg neg + neg
Actinobacillus succinogenes Proteobacteria Rare neg neg neg neg neg neg + + neg
Actinobacillus ureae Proteobacteria Non neg neg neg + +
Actinobaculum massiliense Actinobacteria Minor + neg neg
Actinomyces bouchesdurhonensis Actinobacteria Unlikely + neg
Actinomyces canis Actinobacteria Non + neg neg neg
Actinomyces dentalis Actinobacteria Non + neg neg
Actinomyces georgiae Actinobacteria Non + neg d(neg) d(neg) neg
Actinomyces gerencseriae Actinobacteria Unlikely + d(+) d(+) neg
Actinomyces graevenitzii Actinobacteria Minor + neg + + neg vr neg
Actinomyces ihuae Actinobacteria Rare + neg
Actinomyces israelii Actinobacteria Non + vr
Actinomyces johnsonii Actinobacteria Rare + d neg
Actinomyces marseillensis Actinobacteria Rare + neg
Actinomyces massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Actinomyces mediterranea Actinobacteria Rare +
Actinomyces minihominis Actinobacteria Rare +
Actinomyces naeslundii Actinobacteria Minor + + neg neg
Actinomyces oris Actinobacteria Rare + + neg neg
Actinomyces pacaensis Actinobacteria Rare +
Actinomyces polynesiensis Actinobacteria Rare + neg neg + + +
Actinomyces provencensis Actinobacteria Rare +
Actinomyces sp. ph3 Actinobacteria Rare +
Actinomyces timonensis Actinobacteria Rare + neg neg neg w + + neg neg
Actinomyces urogenitalis Actinobacteria Rare + neg neg
Actinomyces viscosus Actinobacteria Minor + neg neg
Actinosynnema mirum Actinobacteria Non + + neg neg neg neg + neg
Actinotignum schaalii Actinobacteria Rare + neg neg
Acutalibacter muris Firmicutes Rare +
Acutalibacter timonensis Firmicutes Minor
Adhaeribacter aquaticus Bacteroidetes Unlikely neg
Adlercreutzia caecimuris Actinobacteria Rare +
Adlercreutzia equolifaciens Actinobacteria Moderate +
Adlercreutzia equolifaciens subsp. celatus Actinobacteria Rare + neg neg neg neg neg neg neg neg
Adlercreutzia hattorii Actinobacteria Rare +
Adlercreutzia mucosicola Actinobacteria Rare +
Adlercreutzia rubneri Actinobacteria Rare +
Aeribacillus pallidus Firmicutes Unlikely + + + + +
Aerococcus vaginalis Firmicutes Non + neg neg neg neg neg neg neg neg
Aerococcus viridans Firmicutes Rare + neg neg neg + neg + d(+) neg
Aeromicrobium massiliense Actinobacteria Rare +
Aeromicrobium tamlense Actinobacteria Rare +
Aeromonas allosaccharophila Proteobacteria Rare neg neg neg neg + neg + neg
Aeromonas bestiarum Proteobacteria Rare neg neg neg + neg + neg
Aeromonas caviae Proteobacteria Unlikely neg neg neg + neg + neg
Aeromonas dhakensis Proteobacteria Rare neg neg neg neg + neg + neg neg
Aeromonas encheleia Proteobacteria Unlikely neg neg neg d(neg) neg + neg
Aeromonas enteropelogenes Proteobacteria Rare neg neg neg + neg
Aeromonas eucrenophila Proteobacteria Non neg neg neg neg
Aeromonas hydrophila Proteobacteria Unlikely neg neg neg + neg
Aeromonas hydrophila subsp. hydrophila Proteobacteria Unlikely neg + neg
Aeromonas jandaei Proteobacteria Rare neg neg neg + neg + neg neg
Aeromonas media Proteobacteria Rare neg neg neg + neg
Aeromonas popoffii Proteobacteria Unlikely neg neg neg neg + neg + neg
Aeromonas salmonicida Proteobacteria Unlikely neg neg neg neg + neg + +
Aeromonas schubertii Proteobacteria Non neg neg neg neg neg neg neg neg
Aeromonas sobria Proteobacteria Rare neg neg neg neg + neg + neg
Aeromonas taiwanensis Proteobacteria Non neg neg neg neg + neg + neg neg
Aeromonas tecta Proteobacteria Rare neg + neg
Aeromonas trota Proteobacteria Rare neg neg d(+) neg
Aeromonas veronii Proteobacteria Rare neg neg neg neg + neg
Aestuariimicrobium kwangyangense Actinobacteria Rare + neg neg +
Afipia birgiae Proteobacteria Unlikely neg
Afipia broomeae Proteobacteria Rare neg neg
Afipia lausannensis Proteobacteria Unlikely neg
Africanella massiliensis Firmicutes Rare +
Agathobacter ruminis Firmicutes Rare + neg neg neg neg neg neg neg
Agathobaculum butyriciproducens Firmicutes Moderate + neg + neg
Agathobaculum desmolans Firmicutes Minor + neg neg
Aggregatibacter actinomycetemcomitans Proteobacteria Rare neg d neg
Aggregatibacter aphrophilus Proteobacteria Minor neg neg neg neg d d neg neg neg
Aggregatibacter segnis Proteobacteria Minor neg neg neg neg neg neg neg neg
Agrilactobacillus composti Firmicutes Unlikely + + +
Agrobacterium radiobacter Proteobacteria Unlikely neg + +
Agrobacterium rhizogenes Proteobacteria Unlikely neg +
Agrobacterium tumefaciens Proteobacteria Unlikely neg +
Agrococcus casei Actinobacteria Rare + neg
Agrococcus jejuensis Actinobacteria Rare + neg neg neg neg neg neg
Agrococcus jenensis Actinobacteria Rare + w +
Agrococcus terreus Actinobacteria Unlikely + + +
Akkermansia glycaniphila Verrucomicrobia Rare neg
Akkermansia muciniphila Verrucomicrobia Widespread neg neg neg neg
Alcaligenes faecalis Proteobacteria Rare neg neg neg neg vr
Alcaligenes faecalis subsp. faecalis Proteobacteria Unlikely neg neg neg vr
Aliagarivorans marinus Proteobacteria Rare neg + w + w
Aliarcobacter butzleri Proteobacteria Rare neg
Aliarcobacter cryaerophilus Proteobacteria Rare neg
Aliarcobacter skirrowii Proteobacteria Rare neg
Alicyclobacillus acidocaldarius Firmicutes Rare + neg + d
Aliiruegeria sabulilitoris Proteobacteria Unlikely neg neg + +
Alistipes communis Bacteroidetes Rare neg + w w
Alistipes dispar Bacteroidetes Rare neg w w w
Alistipes finegoldii Bacteroidetes Moderate neg neg neg neg
Alistipes ihumii Bacteroidetes Moderate neg
Alistipes indistinctus Bacteroidetes Moderate neg w w w
Alistipes inops Bacteroidetes Rare neg
Alistipes marseilloanorexicus Bacteroidetes Rare neg
Alistipes massiliensis Bacteroidetes Rare neg
Alistipes megaguti Bacteroidetes Rare neg w w neg + w + neg neg
Alistipes montrealensis Bacteroidetes Rare neg + neg
Alistipes obesi Bacteroidetes Moderate neg
Alistipes onderdonkii Bacteroidetes Moderate neg
Alistipes onderdonkii subsp. vulgaris Bacteroidetes Rare neg + w w
Alistipes provencensis Bacteroidetes Rare neg neg neg neg neg w neg neg
Alistipes putredinis Bacteroidetes Widespread neg
Alistipes senegalensis Bacteroidetes Moderate neg
Alistipes shahii Bacteroidetes Widespread neg
Alistipes timonensis Bacteroidetes Moderate neg
Alkalibacillus halophilus Firmicutes Unlikely +
Alkalihalobacillus alcalophilus Firmicutes Unlikely +
Alkalihalobacillus gibsonii Firmicutes Rare +
Alkalihalobacillus halodurans Firmicutes Rare + neg neg neg + neg + neg neg
Alkalihalobacillus oshimensis Firmicutes Unlikely + neg neg + neg + neg +
Alkaliphilus metalliredigens Firmicutes Rare +
Alkaliphilus oremlandii Firmicutes Non + +
Alkaliphilus transvaalensis Firmicutes Non +
Alkanindiges illinoisensis Proteobacteria Non vr
Allisonella histaminiformans Firmicutes Minor neg
Allobaculum fili Firmicutes Rare +
Allobaculum mucilyticum Firmicutes Rare +
Alloprevotella rava Bacteroidetes Rare neg neg neg
Alloprevotella tannerae Bacteroidetes Minor neg neg neg neg
Alloscardovia omnicolens Actinobacteria Minor + neg d(neg) d(neg)
Alteracholeplasma palmae Tenericutes Rare unk
Alterileibacterium massiliense Firmicutes Rare neg
Amaricoccus kaplicensis Proteobacteria Unlikely neg + +
Amedibacillus dolichus Firmicutes Minor + neg neg
Amedibacterium intestinale Firmicutes Rare + neg neg
Aminipila butyrica Firmicutes Rare +
Aminipila terrae Firmicutes Rare +
Aminomonas paucivorans Synergistetes Rare neg
Ammonifex degensii Firmicutes Non neg
Amycolatopsis alba Actinobacteria Rare + + neg + + + neg neg
Amycolatopsis mediterranei Actinobacteria Rare + neg neg neg + + + neg
Amycolatopsis thailandensis Actinobacteria Rare + + + neg
Amycolatopsis vancoresmycina Actinobacteria Unlikely +
Anaerobiospirillum succiniciproducens Proteobacteria Rare neg neg neg vr vr neg neg
Anaerobiospirillum thomasii Proteobacteria Rare neg + neg neg
Anaerobutyricum hallii Firmicutes Widespread + neg neg neg neg d w
Anaerobutyricum soehngenii Firmicutes Rare + +
Anaerococcus hydrogenalis Firmicutes Rare + + neg
Anaerococcus jeddahensis Firmicutes Rare +
Anaerococcus lactolyticus Firmicutes Rare + neg neg
Anaerococcus marasmi Firmicutes Rare + neg neg neg + neg neg + neg
Anaerococcus mediterraneensis Firmicutes Rare +
Anaerococcus murdochii Firmicutes Rare +
Anaerococcus obesiensis Firmicutes Rare +
Anaerococcus octavius Firmicutes Rare + neg neg
Anaerococcus prevotii Firmicutes Minor +
Anaerococcus provencensis Firmicutes Rare +
Anaerococcus rubeinfantis Firmicutes Rare + neg neg neg neg neg neg neg
Anaerococcus senegalensis Firmicutes Rare +
Anaerococcus tetradius Firmicutes Rare +
Anaerococcus vaginalis Firmicutes Minor +
Anaerocolumna aminovalerica Firmicutes Rare +
Anaerocolumna cellulosilytica Firmicutes Rare +
Anaerocolumna chitinilytica Firmicutes Rare +
Anaerocolumna sedimenticola Firmicutes Rare + neg neg neg
Anaerocolumna xylanovorans Firmicutes Rare +
Anaerofilum pentosovorans Firmicutes Rare +
Anaerofustis stercorihominis Firmicutes Minor + neg
Anaeroglobus geminatus Firmicutes Minor neg neg neg neg neg
Anaeromassilibacillus senegalensis Firmicutes Rare neg
Anaerorhabdus furcosa Firmicutes Rare neg
Anaerosalibacter bizertensis Firmicutes Rare +
Anaerosalibacter massiliensis Firmicutes Rare + +
Anaerosphaera massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Anaerospora hongkongensis Firmicutes Rare neg
Anaerostipes butyraticus Firmicutes Rare + + +
Anaerostipes caccae Firmicutes Moderate + + + + + + +
Anaerostipes coli Firmicutes Rare +
Anaerostipes hadrus Firmicutes Moderate + neg neg d(+) d(+)
Anaerostipes hominis Firmicutes Rare vr
Anaerostipes rhamnosivorans Firmicutes Rare vr + + + + w
Anaerostipes rhamnosus Firmicutes Rare +
Anaerotignum faecicola Firmicutes Rare +
Anaerotignum lactatifermentans Firmicutes Moderate neg
Anaerotignum neopropionicum Firmicutes Rare neg
Anaerotignum propionicum Firmicutes Rare +
Anaerotruncus colihominis Firmicutes Moderate + neg neg neg
Anaerotruncus massiliensis Firmicutes Rare neg + neg + + neg neg +
Anaerotruncus rubiinfantis Firmicutes Moderate +
Anaerovorax odorimutans Firmicutes Rare vr
Ancylobacter polymorphus Proteobacteria Rare neg + + neg
Aneurinibacillus aneurinilyticus Firmicutes Rare + neg neg neg neg neg neg
Aneurinibacillus migulanus Firmicutes Rare + neg neg + neg neg
Angelakisella massiliensis Firmicutes Rare neg
Anoxybacillus flavithermus Firmicutes Non +
Anoxybacillus gonensis Firmicutes Unlikely +
Anoxynatronum sibiricum Firmicutes Rare +
Anseongella ginsenosidimutans Bacteroidetes Unlikely neg
Aquabacterium citratiphilum Proteobacteria Rare neg
Aquabacterium commune Proteobacteria Rare neg
Aquabacterium parvum Proteobacteria Rare neg
Aquamicrobium lusatiense Proteobacteria Unlikely neg + neg
Aquincola tertiaricarbonis Proteobacteria Non neg
Arabia massiliensis Actinobacteria Rare neg
Arachnia propionica Actinobacteria Rare +
Arcanobacterium haemolyticum Actinobacteria Rare + neg neg
Arthrobacter agilis Actinobacteria Non + neg
Arthrobacter castelli Actinobacteria Rare + neg
Arthrobacter citreus Actinobacteria Unlikely vr
Arthrobacter gandavensis Actinobacteria Unlikely + neg neg neg neg neg neg neg neg
Arthrobacter globiformis Actinobacteria Unlikely +
Arthrobacter koreensis Actinobacteria Unlikely +
Arthrobacter luteolus Actinobacteria Unlikely + neg
Arthrobacter parietis Actinobacteria Non + neg
Arthrobacter pigmenti Actinobacteria Non + neg
Arthrobacter russicus Actinobacteria Unlikely +
Asaccharospora irregularis Firmicutes Rare + neg neg neg neg neg neg neg neg
Asticcacaulis biprosthecium Proteobacteria Unlikely neg
Asticcacaulis excentricus Proteobacteria Unlikely neg
Atlantibacter hermannii Proteobacteria Rare neg neg w neg w neg + neg
Atopobium minutum Actinobacteria Minor + neg neg neg neg neg
Atopostipes suicloacalis Firmicutes Unlikely +
Aureimonas altamirensis Proteobacteria Unlikely neg +
Aureimonas ureilytica Proteobacteria Unlikely neg
Averyella dalhousiensis Proteobacteria Rare neg neg d neg w neg + +
Azoarcus pumilus Proteobacteria Rare neg
Azospirillum lipoferum Proteobacteria Rare neg neg neg neg neg d(+) d(+)
Azotobacter vinelandii Proteobacteria Non neg
Bacilliculturomica massiliensis Firmicutes Rare +
Bacillus altitudinis Firmicutes Rare + +
Bacillus amyloliquefaciens Firmicutes Rare + neg neg neg neg neg + d(+) neg
Bacillus andreraoultii Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus aneurinolyticus Firmicutes Rare + neg neg + neg neg
Bacillus anthracis Firmicutes Non + neg neg neg neg neg neg neg
Bacillus atrophaeus Firmicutes Rare + neg neg neg neg neg + neg neg
Bacillus badius DSM 23T Firmicutes Rare + neg neg neg neg neg neg neg
Bacillus badius DSM 5610 Firmicutes Rare + neg neg neg neg neg neg neg
Bacillus baekryungensis Firmicutes Non + neg neg neg
Bacillus benzoevorans Firmicutes Rare +
Bacillus caccae Firmicutes Rare +
Bacillus cereus Firmicutes Minor + neg neg neg + neg neg neg neg
Bacillus circulans Firmicutes Rare + d(neg) neg neg + neg + neg neg
Bacillus clausii Firmicutes Rare + neg neg neg + neg + neg neg
Bacillus cytotoxicus Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus dakarensis Firmicutes Rare + + neg neg neg + neg neg +
Bacillus endophyticus Firmicutes Unlikely + neg neg + + neg
Bacillus firmus Firmicutes Rare + neg neg neg vr neg + neg neg
Bacillus fordii Firmicutes Rare neg neg neg neg neg neg neg neg neg
Bacillus halotolerans Firmicutes Rare + neg neg neg + + + + +
Bacillus idriensis Firmicutes Rare + neg neg neg vr neg + neg neg
Bacillus infantis Firmicutes Rare +
Bacillus kwashiorkori Firmicutes Rare + neg neg neg neg neg neg neg
Bacillus licheniformis Firmicutes Minor + neg neg neg + d + + neg
Bacillus marasmi Firmicutes Rare + + neg + + + +
Bacillus massilioanorexius Firmicutes Rare + +
Bacillus massiliogabonensis Firmicutes Unlikely neg neg neg neg + neg neg neg neg
Bacillus massilionigeriensis Firmicutes Rare + neg
Bacillus mediterraneensis Firmicutes Rare + neg neg neg neg neg + + neg
Bacillus methanolicus Firmicutes Non + neg neg neg neg + d(+)
Bacillus mojavensis Firmicutes Rare + + +
Bacillus mycoides Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus niameyensis Firmicutes Rare + neg neg neg neg neg neg neg
Bacillus pakistanensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus phocaeensis Firmicutes Rare + neg neg neg neg neg neg neg
Bacillus pseudofirmus Firmicutes Rare +
Bacillus pseudomycoides Firmicutes Unlikely + neg
Bacillus pumilus Firmicutes Rare + neg neg neg + neg + neg neg
Bacillus rubiinfantis Firmicutes Rare + neg neg neg neg neg neg neg
Bacillus sinesaloumensis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Bacillus siralis Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus smithii Firmicutes Rare + neg neg neg d neg d(+) d(neg) neg
Bacillus sonorensis Firmicutes Rare + +
Bacillus subtilis Firmicutes Minor + neg neg neg d(w) d(w) + w(+) neg
Bacillus testis Firmicutes Rare + d neg neg
Bacillus thuringiensis Firmicutes Rare + neg neg neg vr neg neg neg neg
Bacillus timonensis Firmicutes Rare neg
Bacillus tuaregi Firmicutes Rare + neg neg neg neg neg + neg neg
Bacillus vallismortis Firmicutes Rare + neg neg neg + neg + + neg
Bacillus velezensis Variant polyfermenticus Firmicutes Rare + neg neg neg + + + + neg
Bacillus wiedmannii Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacteroides acidifaciens Bacteroidetes Moderate neg
Bacteroides bouchesdurhonensis Bacteroidetes Moderate neg +
Bacteroides caccae Bacteroidetes Widespread neg neg neg neg neg
Bacteroides caecimuris Bacteroidetes Rare neg
Bacteroides cellulosilyticus Bacteroidetes Moderate neg neg neg neg neg
Bacteroides clarus Bacteroidetes Moderate neg neg neg neg
Bacteroides congonensis Bacteroidetes Moderate neg neg + neg + + neg +
Bacteroides coprosuis Bacteroidetes Rare neg
Bacteroides cutis Bacteroidetes Moderate neg
Bacteroides eggerthii Bacteroidetes Widespread neg neg neg neg neg neg neg
Bacteroides faecalis Bacteroidetes Rare neg + + w
Bacteroides faecichinchillae Bacteroidetes Rare neg neg + neg
Bacteroides faecis Bacteroidetes Moderate neg neg d neg
Bacteroides finegoldii Bacteroidetes Widespread neg neg neg neg
Bacteroides fluxus Bacteroidetes Moderate neg + + +
Bacteroides fragilis Bacteroidetes Widespread neg neg neg neg neg
Bacteroides galacturonicus Bacteroidetes Rare neg neg
Bacteroides gallinarum Bacteroidetes Moderate neg neg neg neg
Bacteroides graminisolvens Bacteroidetes Rare neg neg neg neg
Bacteroides helcogenes Bacteroidetes Rare neg neg neg neg neg neg
Bacteroides heparinolyticus Bacteroidetes Rare neg neg neg
Bacteroides ihuae Bacteroidetes Rare neg neg + neg neg + neg neg +
Bacteroides ilei Bacteroidetes Minor neg neg neg neg neg neg neg neg neg
Bacteroides intestinalis Bacteroidetes Widespread neg neg neg neg
Bacteroides luhongzhouii Bacteroidetes Rare neg
Bacteroides luti Bacteroidetes Rare neg
Bacteroides mediterraneensis Bacteroidetes Moderate neg neg
Bacteroides ndongoniae Bacteroidetes Minor neg neg
Bacteroides neonati Bacteroidetes Minor neg neg neg neg
Bacteroides nordii Bacteroidetes Moderate neg + neg neg
Bacteroides oleiciplenus Bacteroidetes Moderate neg + + +
Bacteroides ovatus Bacteroidetes Widespread neg neg neg neg neg + neg
Bacteroides pectinophilus Bacteroidetes Moderate neg neg
Bacteroides propionicifaciens Bacteroidetes Rare neg
Bacteroides pyogenes Bacteroidetes Minor neg neg neg + d
Bacteroides reticulotermitis Bacteroidetes Rare neg neg neg neg
Bacteroides salyersiae Bacteroidetes Moderate neg + neg d
Bacteroides sp. Strain D8 Bacteroidetes Rare neg neg neg neg
Bacteroides stercorirosoris Bacteroidetes Moderate neg neg neg neg
Bacteroides stercoris Bacteroidetes Widespread neg neg neg neg neg neg
Bacteroides thetaiotaomicron Bacteroidetes Widespread neg neg neg neg
Bacteroides timonensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Bacteroides togonis Bacteroidetes Minor neg neg +
Bacteroides uniformis Bacteroidetes Widespread neg neg neg neg
Bacteroides xylanisolvens Bacteroidetes Widespread neg vr + vr
Bacteroides zhangwenhongi Bacteroidetes Rare neg
Bacteroides zoogleoformans Bacteroidetes Rare neg neg neg neg neg neg
Bariatricus massiliensis Firmicutes Minor +
Barnesiella intestinihominis Bacteroidetes Moderate neg neg neg neg
Barnesiella viscericola Bacteroidetes Rare neg neg neg neg
Bartonella vinsonii Proteobacteria Non neg neg
Bavariicoccus seileri Firmicutes Rare +
Bdellovibrio bacteriovorus Bdellovibrionota Moderate neg
Beduinella massiliensis Firmicutes Rare neg
Beduini massiliensis Firmicutes Rare neg neg
Beduinibacterium massiliense Firmicutes Rare +
Belnapia soli Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Berryella intestinalis Actinobacteria Rare +
Bhargavaea beijingensis Firmicutes Rare + neg neg neg neg neg
Bhargavaea cecembensis Firmicutes Non + neg neg neg neg neg neg
Bifidobacterium adolescentis Actinobacteria Widespread + neg neg neg neg neg + d neg
Bifidobacterium aerophilum Actinobacteria Rare + neg + neg neg neg neg neg neg
Bifidobacterium angulatum Actinobacteria Moderate + neg neg neg neg neg neg neg neg
Bifidobacterium animalis Actinobacteria Moderate + neg neg neg neg neg neg neg
Bifidobacterium animalis subsp. lactis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium asteroides Actinobacteria Rare + neg neg neg
Bifidobacterium avesanii Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium biavatii Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium bifidum Actinobacteria Widespread + neg neg neg neg neg neg neg neg
Bifidobacterium boum Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium breve Actinobacteria Widespread + neg neg neg neg neg + + vr
Bifidobacterium callitrichidarum Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium catenulatum Actinobacteria Moderate + neg neg neg neg neg neg + neg
Bifidobacterium catenulatum subsp. kashiwanohense Actinobacteria Rare + neg neg +
Bifidobacterium choerinum Actinobacteria Rare + neg neg neg
Bifidobacterium coryneforme Actinobacteria Rare + neg d(neg)
Bifidobacterium cuniculi Actinobacteria Rare + neg neg
Bifidobacterium dentium Actinobacteria Moderate + neg neg neg neg neg + neg neg
Bifidobacterium eulemuris Actinobacteria Rare + w w + +
Bifidobacterium faecale Actinobacteria Rare + neg neg neg neg neg + neg +
Bifidobacterium gallicum Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium imperatoris Actinobacteria Rare + + neg
Bifidobacterium indicum Actinobacteria Rare + neg neg neg
Bifidobacterium lemurum Actinobacteria Rare + neg neg neg neg + + neg neg
Bifidobacterium longum subsp. infantis Actinobacteria Moderate + neg neg neg neg d d d neg
Bifidobacterium longum subsp. longum Actinobacteria Widespread + neg neg neg neg neg neg neg neg
Bifidobacterium longum subsp. suis Actinobacteria Rare + neg neg
Bifidobacterium merycicum Actinobacteria Rare + neg neg neg
Bifidobacterium minimum Actinobacteria Rare + neg neg neg neg
Bifidobacterium mongoliense Actinobacteria Unlikely + neg neg neg neg neg neg neg neg
Bifidobacterium moukalabense Actinobacteria Rare + neg neg neg
Bifidobacterium myosotis Actinobacteria Rare + neg neg neg neg neg d neg neg
Bifidobacterium pseudocatenulatum Actinobacteria Widespread + neg neg neg neg neg neg d neg
Bifidobacterium pseudolongum Actinobacteria Minor + neg neg neg neg neg neg neg neg
Bifidobacterium pseudolongum subsp. globosum Actinobacteria Rare + neg neg neg
Bifidobacterium pullorum subsp. gallinarum Actinobacteria Rare + neg neg neg
Bifidobacterium pullorum subsp. saeculare Actinobacteria Rare +
Bifidobacterium ramosum Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium reuteri Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium ruminantium Actinobacteria Minor + neg neg neg neg neg + neg neg
Bifidobacterium saguini Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifidobacterium scardovii Actinobacteria Minor + neg neg neg neg neg neg neg neg
Bifidobacterium stellenboschense Actinobacteria Rare + neg neg neg neg neg + + neg
Bifidobacterium subtile Actinobacteria Rare + neg neg neg +
Bifidobacterium thermacidophilum Actinobacteria Rare + neg +
Bifidobacterium thermophilum Actinobacteria Rare + neg neg neg neg neg neg neg neg
Bifissio spartinae Bacteroidetes Rare neg
Bilophila wadsworthia Desulfobacterota Widespread neg
Bittarella massiliensis Firmicutes Moderate neg
Blastococcus massiliensis Actinobacteria Rare +
Blastomonas natatoria Proteobacteria Unlikely neg
Blautia brookingsii Firmicutes Rare +
Blautia caecimuris Firmicutes Rare +
Blautia coccoides Firmicutes Minor + + neg w + w +
Blautia faecicola Firmicutes Rare + neg neg neg neg neg neg + neg
Blautia faecis Firmicutes Rare + neg neg neg neg neg neg neg neg
Blautia glucerasea Firmicutes Rare + neg neg
Blautia hansenii Firmicutes Moderate + neg neg neg neg neg
Blautia hominis Firmicutes Rare + neg neg neg neg + neg neg neg
Blautia hydrogenotrophica Firmicutes Moderate + neg
Blautia intestinalis Firmicutes Rare +
Blautia liquoris Firmicutes Rare +
Blautia luti Firmicutes Minor + neg neg neg +
Blautia marasmi Firmicutes Rare +
Blautia massiliensis Firmicutes Moderate neg + + + + +
Blautia obeum Firmicutes Widespread + neg neg neg neg d(+)
Blautia phocaeensis Firmicutes Rare +
Blautia producta Firmicutes Widespread + d neg
Blautia provencensis Firmicutes Rare +
Blautia pseudococcoides Firmicutes Rare + + neg w + w +
Blautia schinkii Firmicutes Rare +
Blautia stercoris Firmicutes Minor + neg neg + + neg neg neg
Blautia wexlerae Firmicutes Moderate + d
Bordetella bronchiseptica Proteobacteria Non neg
Bordetella hinzii Proteobacteria Unlikely neg neg neg neg neg
Bordetella trematum Proteobacteria Non neg neg neg neg neg
Bosea massiliensis Proteobacteria Rare neg
Brachybacterium conglomeratum Actinobacteria Rare + neg neg neg neg neg
Brachybacterium faecium Actinobacteria Unlikely + neg neg neg
Brachybacterium ginsengisoli Actinobacteria Unlikely +
Brachybacterium massiliense Actinobacteria Rare + + neg + + + + neg +
Brachybacterium muris Actinobacteria Rare + neg
Brachybacterium paraconglomeratum Actinobacteria Rare + + + neg neg neg
Brachymonas chironomi Proteobacteria Unlikely neg neg
Brachyspira aalborgi Spirochaetes Rare neg +
Brachyspira hyodysenteriae Spirochaetes Rare neg
Brachyspira pilosicoli Spirochaetes Unlikely neg d(+)
Bradyrhizobium denitrificans Proteobacteria Rare neg
Bradyrhizobium elkanii Proteobacteria Rare neg
Bradyrhizobium ganzhouense Proteobacteria Unlikely neg
Bradyrhizobium icense Proteobacteria Unlikely neg
Bradyrhizobium japonicum Proteobacteria Rare neg
Bradyrhizobium neotropicale Proteobacteria Rare neg
Brassicibacter mesophilus Firmicutes Rare neg
Brenneria populi Li et al. 2015 Proteobacteria Rare neg neg + neg + d + + neg
Brevibacillus agri Firmicutes Unlikely + neg neg neg w(neg) neg + neg neg
Brevibacillus borstelensis Firmicutes Rare + neg neg neg d(w) neg neg neg neg
Brevibacillus brevis Firmicutes Rare vr + vr neg
Brevibacillus centrosporus Firmicutes Unlikely + neg neg neg w(neg) neg + neg neg
Brevibacillus choshinensis Firmicutes Rare + neg d
Brevibacillus formosus Firmicutes Unlikely + neg neg + neg neg neg
Brevibacillus laterosporus Firmicutes Rare vr + +
Brevibacillus massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Brevibacillus parabrevis Firmicutes Unlikely vr + +
Brevibacillus thermoruber Firmicutes Non +
Brevibacterium aurantiacum Actinobacteria Unlikely + neg neg neg
Brevibacterium casei Actinobacteria Rare + neg neg neg neg neg neg neg neg
Brevibacterium celere Actinobacteria Rare +
Brevibacterium epidermidis Actinobacteria Rare + neg
Brevibacterium ihuae Actinobacteria Rare +
Brevibacterium iodinum Actinobacteria Unlikely vr neg neg neg neg neg neg neg neg
Brevibacterium linens Actinobacteria Unlikely + neg neg neg neg neg neg neg neg
Brevibacterium luteolum Actinobacteria Rare +
Brevibacterium mcbrellneri Actinobacteria Unlikely +
Brevibacterium otitidis Actinobacteria Non +
Brevibacterium paucivorans Actinobacteria Rare +
Brevibacterium pityocampae Actinobacteria Rare + neg neg neg
Brevibacterium ravenspurgense Actinobacteria Rare + neg neg neg neg neg neg neg neg
Brevibacterium samyangense Actinobacteria Rare + neg
Brevibacterium sanguinis Actinobacteria Rare + neg neg
Brevibacterium senegalense Actinobacteria Rare + neg
Brevundimonas aurantiaca Proteobacteria Rare neg
Brevundimonas bacteroides Proteobacteria Rare neg
Brevundimonas bullata Proteobacteria Rare neg neg neg neg
Brevundimonas diminuta Proteobacteria Rare neg neg neg neg neg
Brevundimonas intermedia Proteobacteria Rare neg
Brevundimonas nasdae Proteobacteria Rare neg neg neg
Brevundimonas terrae Proteobacteria Rare neg neg neg neg neg
Brevundimonas vesicularis Proteobacteria Rare neg neg neg neg neg
Brochothrix thermosphacta Firmicutes Unlikely + w + neg neg w + vr neg
Brucella anthropi Proteobacteria Unlikely neg + + + + d(+)
Brucella cytisi Proteobacteria Rare neg
Brucella melitensis Proteobacteria Non neg
Brucella tritici Proteobacteria Unlikely neg neg neg neg
Buchnera aphidicola Proteobacteria Non neg
Bulleidia extructa Firmicutes Rare +
Burkholderia arboris Proteobacteria Rare neg +
Burkholderia cepacia Proteobacteria Rare neg neg + + + + +
Burkholderia gladioli Proteobacteria Unlikely neg + + + + + +
Burkholderia mallei Proteobacteria Unlikely neg
Burkholderia multivorans Proteobacteria Rare neg + + + + + +
Burkholderia pseudomallei Proteobacteria Unlikely neg
Burkholderia pyrrocinia Proteobacteria Unlikely neg +
Burkholderia vietnamiensis Proteobacteria Rare neg neg + + + +
Buttiauxella agrestis Proteobacteria Rare neg neg neg neg d neg + d neg
Butyribacter intestini Firmicutes Rare + neg neg neg neg neg neg neg neg
Butyricicoccus faecihominis Firmicutes Rare + neg neg
Butyricicoccus porcorum Firmicutes Rare + neg neg neg
Butyricicoccus pullicaecorum Firmicutes Minor + neg neg neg
Butyricimonas faecalis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Butyricimonas faecihominis Bacteroidetes Rare neg neg neg + neg neg neg neg
Butyricimonas paravirosa Bacteroidetes Rare neg neg neg + neg neg neg neg
Butyricimonas phoceensis Bacteroidetes Rare neg +
Butyricimonas synergistica Bacteroidetes Minor neg neg neg neg neg neg neg neg
Butyricimonas virosa Bacteroidetes Moderate neg neg neg + neg neg neg neg
Butyrivibrio crossotus Firmicutes Widespread neg neg neg neg neg neg neg
Butyrivibrio fibrisolvens Firmicutes Minor neg neg neg neg
Butyrivibrio hungatei Firmicutes Unlikely neg
Butyrivibrio proteoclasticus Firmicutes Rare +
Caballeronia novacaledonica Proteobacteria Rare neg
Caecibacter massiliensis Firmicutes Rare
Caldibacillus thermoamylovorans Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Caldicellulosiruptor diazotrophicus Firmicutes Non +
Caldicoprobacter faecalis Firmicutes Unlikely neg neg neg neg
Caloranaerobacter azorensis Firmicutes Non neg
Campylobacter avium Proteobacteria Non neg
Campylobacter coli Proteobacteria Unlikely neg
Campylobacter concisus Proteobacteria Minor neg
Campylobacter curvus Proteobacteria Rare neg
Campylobacter faecalis Proteobacteria Rare neg
Campylobacter fetus subsp. fetus Proteobacteria Rare neg
Campylobacter gracilis Proteobacteria Minor neg
Campylobacter hominis Proteobacteria Minor neg
Campylobacter hyointestinalis subsp. hyointestinalis Proteobacteria Unlikely neg
Campylobacter jejuni subsp. doylei Proteobacteria Rare neg
Campylobacter jejuni subsp. jejuni Proteobacteria Unlikely neg
Campylobacter lanienae Proteobacteria Rare neg
Campylobacter lari subsp. concheus Proteobacteria Rare neg
Campylobacter lari subsp. lari Proteobacteria Rare neg
Campylobacter mucosalis Proteobacteria Rare neg
Campylobacter peloridis Proteobacteria Rare neg
Campylobacter rectus Proteobacteria Rare neg
Campylobacter showae Proteobacteria Rare neg
Campylobacter sputorum Proteobacteria Non neg
Campylobacter troglodytis Proteobacteria Rare neg
Campylobacter upsaliensis Proteobacteria Rare neg
Campylobacter ureolyticus Proteobacteria Minor neg
Candidatus Babela massiliensis Candidatus Dependentiae Unlikely neg
Candidatus Dorea massiliensis Firmicutes Rare +
Candidatus Stoquefichus massiliensis Firmicutes Rare +
Capnocytophaga canimorsus Bacteroidetes Unlikely neg neg neg neg neg neg
Capnocytophaga gingivalis Bacteroidetes Non neg neg
Capnocytophaga granulosa Bacteroidetes Rare neg neg neg
Capnocytophaga leadbetteri Bacteroidetes Rare neg
Capnocytophaga ochracea Bacteroidetes Rare neg neg neg neg neg
Capnocytophaga sputigena Bacteroidetes Rare neg neg neg
Capnocytophaga stomatis Bacteroidetes Unlikely neg
Caproicibacter fermentans Firmicutes Rare neg
Cardiobacterium hominis Proteobacteria Rare neg neg neg neg neg neg + +
Cardiobacterium valvarum Proteobacteria Rare neg neg +
Carnobacterium divergens Firmicutes Non + neg neg neg neg neg neg neg
Carnobacterium inhibens Firmicutes Rare + neg neg neg neg neg + neg neg
Carnobacterium maltaromaticum Firmicutes Unlikely + neg neg neg + neg + + neg
Carnobacterium mobile Firmicutes Non + neg neg neg neg neg neg neg
Casaltella massiliensis Firmicutes Rare neg
Catenibacillus scindens Firmicutes Rare + neg neg neg neg neg neg neg neg
Catenibacterium mitsuokai Firmicutes Moderate + neg neg neg
Catenulispora acidiphila Actinobacteria Unlikely +
Catonella morbi Firmicutes Rare neg neg neg neg
Caulobacter vibrioides Proteobacteria Unlikely neg
Cedecea davisae Proteobacteria Rare neg neg neg neg neg vr + neg
Cedecea lapagei Proteobacteria Rare neg neg neg neg neg neg + neg
Cedecea neteri Proteobacteria Rare neg neg neg neg d(w) neg + +
Cellulomonas carbonis Actinobacteria Unlikely + neg neg +
Cellulomonas composti Actinobacteria Rare + neg
Cellulomonas denverensis Actinobacteria Rare + neg neg neg d neg neg +
Cellulomonas fimi Actinobacteria Rare +
Cellulomonas flavigena Actinobacteria Rare +
Cellulomonas hominis Actinobacteria Rare + neg neg neg + neg neg neg
Cellulomonas massiliensis Actinobacteria Rare +
Cellulomonas parahominis Actinobacteria Rare +
Cellulomonas timonensis Actinobacteria Rare + neg neg neg + neg neg neg neg
Cellulosilyticum lentocellum Firmicutes Rare neg
Cellulosilyticum ruminicola Firmicutes Rare neg neg neg neg neg w
Cellulosimicrobium cellulans Actinobacteria Rare + neg
Centipeda periodontii Firmicutes Rare neg + neg neg + +
Cerasibacillus quisquiliarum Firmicutes Non + neg neg neg neg neg neg neg neg
Cetobacterium somerae Fusobacteria Rare neg
Chelatococcus asaccharovorans Proteobacteria Unlikely neg
Chitinophaga agri Bacteroidetes Unlikely neg
Chlamydia trachomatis Chlamydiae Non neg
Chloracidobacterium thermophilum Acidobacteria Non neg
Christensenella hongkongensis Firmicutes Minor + vr neg neg
Christensenella massiliensis Firmicutes Rare neg
Christensenella minuta Firmicutes Minor neg neg neg neg
Christensenella timonensis Firmicutes Minor neg
Chromobacterium violaceum Proteobacteria Unlikely neg neg neg neg + neg neg neg
Chromohalobacter japonicus Proteobacteria Unlikely neg + neg + neg +
Chromohalobacter salexigens Proteobacteria Unlikely neg +
Chryseobacterium gallinarum Bacteroidetes Unlikely neg neg neg neg neg neg neg
Chryseobacterium gleum Bacteroidetes Unlikely neg neg neg d neg neg neg
Chryseobacterium hominis Bacteroidetes Rare neg neg
Chryseobacterium indologenes Bacteroidetes Rare neg neg neg d
Chryseobacterium oranimense Bacteroidetes Rare neg neg
Chryseobacterium taklimakanense Bacteroidetes Rare neg neg
Chryseobacterium viscerum Bacteroidetes Non neg
Chryseomicrobium amylolyticum Firmicutes Rare + neg neg neg neg neg
Citrobacter amalonaticus Proteobacteria Rare neg neg neg neg d neg + +
Citrobacter braakii Proteobacteria Rare neg neg d neg d(+) neg + +
Citrobacter europaeus Proteobacteria Rare neg neg + neg + + + + neg
Citrobacter farmeri Proteobacteria Minor neg neg neg neg d(+) neg + +
Citrobacter freundii Proteobacteria Minor neg neg vr neg + vr + +
Citrobacter gillenii Proteobacteria Rare neg neg + neg neg + +
Citrobacter intermedius Proteobacteria Unlikely neg
Citrobacter koseri Proteobacteria Minor neg + d neg + d + +
Citrobacter murliniae Proteobacteria Rare neg neg + neg + neg + vr
Citrobacter pasteurii Proteobacteria Rare neg neg vr + neg + +
Citrobacter portucalensis Proteobacteria Rare neg neg neg neg + + + + neg
Citrobacter rodentium Proteobacteria Rare neg + neg neg neg + +
Citrobacter sedlakii Proteobacteria Rare neg neg + neg d(+) d(+) + +
Citrobacter werkmanii Proteobacteria Rare neg neg neg + neg + +
Citrobacter youngae Proteobacteria Rare neg neg + neg + neg + +
Citroniella saccharovorans Firmicutes Rare +
Cloacibacillus evryensis Synergistetes Minor neg
Cloacibacillus porcorum Synergistetes Rare neg
Cloacibacterium normanense Bacteroidetes Rare neg neg neg
Clostridioides difficile Firmicutes Widespread + neg + neg
Clostridioides mangenotii Firmicutes Rare +
Clostridium acetobutylicum Firmicutes Rare + neg neg neg neg neg + neg
Clostridium amazonense Firmicutes Rare +
Clostridium amazonitimonense Firmicutes Rare + neg
Clostridium aminobutyricum Firmicutes Rare + neg w w + w
Clostridium aminophilum Firmicutes Rare +
Clostridium amylolyticum Firmicutes Rare +
Clostridium anorexicamassiliense Firmicutes Rare +
Clostridium argentinense Firmicutes Rare +
Clostridium aurantibutyricum Firmicutes Rare + neg neg neg
Clostridium autoethanogenum Firmicutes Rare +
Clostridium baratii Firmicutes Minor + neg neg neg neg neg neg
Clostridium beijerinckii Firmicutes Minor + +
Clostridium boliviensis Firmicutes Rare +
Clostridium bornimense Firmicutes Rare vr
Clostridium botulinum Gp I Firmicutes Unlikely +
Clostridium botulinum Gp II Firmicutes Unlikely +
Clostridium botulinum Gp III Firmicutes Unlikely +
Clostridium botulinum Gp IV Firmicutes Unlikely +
Clostridium budayi Firmicutes Rare + neg neg
Clostridium butyricum Firmicutes Widespread +
Clostridium cadaveris Firmicutes Rare +
Clostridium cagae Firmicutes Rare + neg neg neg neg neg + neg neg
Clostridium carboxidivorans Firmicutes Rare +
Clostridium carnis Firmicutes Rare +
Clostridium celatum Firmicutes Minor +
Clostridium cellulosi Firmicutes Unlikely neg neg neg + + neg
Clostridium cellulovorans Firmicutes Rare neg
Clostridium chartatabidum Firmicutes Rare + neg
Clostridium chauvoei Firmicutes Rare + neg + +
Clostridium cochlearium Firmicutes Minor +
Clostridium cocleatum Firmicutes Rare + neg neg neg d neg
Clostridium colicanis Firmicutes Rare neg neg neg neg
Clostridium colinum Firmicutes Rare + neg neg d neg
Clostridium combesii Firmicutes Rare + neg neg
Clostridium culturomicium Firmicutes Rare +
Clostridium dakarense Firmicutes Rare + neg
Clostridium diolis Firmicutes Rare + + neg + w
Clostridium disporicum Firmicutes Minor + + +
Clostridium drakei Firmicutes Unlikely +
Clostridium estertheticum Firmicutes Unlikely + + +
Clostridium fallax Firmicutes Rare +
Clostridium felsineum Firmicutes Rare +
Clostridium fessum Firmicutes Rare + neg neg
Clostridium gasigenes Firmicutes Unlikely + neg + neg neg
Clostridium haemolyticum Firmicutes Rare +
Clostridium herbivorans Firmicutes Rare +
Clostridium hylemonae Firmicutes Minor + neg neg neg neg neg neg neg
Clostridium ihumii Firmicutes Rare +
Clostridium innocuum Firmicutes Widespread + + neg
Clostridium intestinale Firmicutes Rare + + +
Clostridium isatidis Firmicutes Unlikely + neg +
Clostridium jeddahense Firmicutes Rare +
Clostridium jeddahitimonense Firmicutes Rare +
Clostridium kluyveri Firmicutes Unlikely vr
Clostridium leptum Firmicutes Widespread +
Clostridium magnum Firmicutes Rare neg
Clostridium malenominatum Firmicutes Rare +
Clostridium manihotivorum Firmicutes Rare +
Clostridium massiliamazoniense Firmicutes Rare + neg
Clostridium massiliodielmoense Firmicutes Rare + neg
Clostridium mediterraneense Firmicutes Rare +
Clostridium merdae Firmicutes Rare + neg
Clostridium metallolevans Firmicutes Rare + + +
Clostridium methoxybenzovorans Firmicutes Rare +
Clostridium methylpentosum Firmicutes Moderate +
Clostridium minihomine Firmicutes Rare +
Clostridium moniliforme Firmicutes Rare + neg neg neg neg neg
Clostridium neonatale Firmicutes Minor +
Clostridium niameyense Firmicutes Rare + +
Clostridium nigeriense Firmicutes Rare + neg
Clostridium nitritogenes Firmicutes Rare + neg neg
Clostridium novyi A Firmicutes Rare +
Clostridium oceanicum Firmicutes Rare + neg neg neg neg neg neg neg
Clostridium paraputrificum Firmicutes Moderate + neg neg
Clostridium pasteurianum Firmicutes Rare +
Clostridium perfringens Firmicutes Widespread + neg neg neg
Clostridium phoceensis Firmicutes Rare neg neg
Clostridium polyendosporum Firmicutes Rare +
Clostridium polynesiense Firmicutes Rare + neg neg neg + neg + neg +
Clostridium polysaccharolyticum Firmicutes Rare neg neg neg neg
Clostridium populeti Firmicutes Rare neg neg neg neg
Clostridium punense Firmicutes Rare +
Clostridium putrefaciens Firmicutes Minor +
Clostridium rectalis Firmicutes Rare + neg neg neg neg neg neg neg neg
Clostridium roseum Firmicutes Rare + neg neg
Clostridium saccharobutylicum Firmicutes Unlikely +
Clostridium saccharoperbutylacetonicum Firmicutes Rare + d neg d + d
Clostridium sardiniense Firmicutes Rare + neg neg neg neg
Clostridium sartagoforme Firmicutes Minor +
Clostridium saudiense Firmicutes Minor +
Clostridium scatologenes Firmicutes Rare +
Clostridium schirmacherense Firmicutes Unlikely +
Clostridium scindens Firmicutes Moderate +
Clostridium senegalense Firmicutes Rare +
Clostridium septicum Firmicutes Rare + neg neg
Clostridium sporogenes Firmicutes Minor + neg neg neg
Clostridium sporosphaeroides Firmicutes Minor +
Clostridium subterminale Firmicutes Rare + neg neg neg
Clostridium sulfidigenes Firmicutes Rare +
Clostridium symbiosum Firmicutes Widespread neg neg neg w neg
Clostridium taeniosporum Firmicutes Unlikely +
Clostridium tertium Firmicutes Moderate + neg neg neg neg neg + neg neg
Clostridium tetani Firmicutes Unlikely + neg neg neg
Clostridium thermarum Firmicutes Unlikely + + + +
Clostridium thermobutyricum Firmicutes Rare vr neg
Clostridium thiosulfatireducens Firmicutes Rare +
Clostridium transplantifaecale Firmicutes Rare + + + + + + + + +
Clostridium tyrobutyricum Firmicutes Rare + neg
Clostridium vincentii Firmicutes Rare +
Clostridium viride Firmicutes Rare +
Colibacter massiliensis Firmicutes Rare + + + +
Colidextribacter massiliensis Firmicutes Rare neg
Collinsella aerofaciens Actinobacteria Widespread + neg neg neg neg
Collinsella bouchesdurhonensis Actinobacteria Minor + neg neg neg vr neg + + neg
Collinsella ihumii Actinobacteria Rare + + +
Collinsella intestinalis Actinobacteria Moderate + neg neg neg neg
Collinsella massiliensis Actinobacteria Rare + neg neg neg neg neg neg + +
Collinsella phocaeensis Actinobacteria Rare neg
Collinsella provencensis Actinobacteria Rare +
Collinsella stercoris Actinobacteria Minor + neg neg neg
Collinsella tanakaei Actinobacteria Minor + neg neg neg
Collinsella vaginalis Actinobacteria Rare +
Comamonas aquatica Proteobacteria Non neg
Comamonas denitrificans Proteobacteria Rare neg
Comamonas kerstersii Proteobacteria Rare neg
Comamonas koreensis Proteobacteria Unlikely neg
Comamonas terrigena Proteobacteria Unlikely neg
Comamonas testosteroni Proteobacteria Rare neg
Comamonas thiooxydans Proteobacteria Rare neg
Companilactobacillus alimentarius Firmicutes Rare + neg neg neg neg neg neg neg neg
Companilactobacillus farciminis Firmicutes Rare + neg neg neg neg neg neg neg neg
Companilactobacillus mindensis Firmicutes Unlikely + neg
Companilactobacillus versmoldensis Firmicutes Unlikely + neg neg
Conexibacter woesei Actinobacteria Rare +
Congobacterium massiliense Firmicutes Rare +
Coprobacillus cateniformis Firmicutes Moderate + neg neg neg neg
Coprobacter fastidiosus Bacteroidetes Moderate neg neg
Coprobacter secundus Bacteroidetes Moderate neg neg neg neg
Coprobacter secundus subsp. similis Bacteroidetes Rare neg neg neg neg
Coprococcus catus Firmicutes Widespread + neg neg neg d(+) neg
Coprococcus comes Firmicutes Widespread + neg neg vr w
Coprococcus eutactus Firmicutes Widespread + neg neg neg
Coprococcus phoceensis Firmicutes Rare vr neg neg neg neg neg neg neg neg
Coraliomargarita akajimensis Verrucomicrobia Non neg neg neg neg + neg + + neg
Coriobacterium glomerans Actinobacteria Unlikely + neg +
Corynebacterium accolens Actinobacteria Rare + neg neg neg neg neg
Corynebacterium afermentans Actinobacteria Rare + neg neg
Corynebacterium ammoniagenes Actinobacteria Rare + neg neg neg
Corynebacterium amycolatum Actinobacteria Rare + neg neg neg + neg neg neg neg
Corynebacterium appendicis Actinobacteria Rare + + neg
Corynebacterium argentoratense Actinobacteria Rare + neg
Corynebacterium aurimucosum Actinobacteria Rare + neg neg d(neg) neg
Corynebacterium bouchesdurhonense Actinobacteria Rare +
Corynebacterium bovis Actinobacteria Rare + + neg
Corynebacterium callunae Actinobacteria Unlikely +
Corynebacterium casei Actinobacteria Rare + neg neg neg neg neg neg neg neg
Corynebacterium coyleae Actinobacteria Rare + neg neg neg neg neg neg neg
Corynebacterium cystitidis Actinobacteria Rare +
Corynebacterium diphtheriae Actinobacteria Non vr
Corynebacterium doosanense Actinobacteria Rare +
Corynebacterium durum Actinobacteria Minor + +
Corynebacterium efficiens Actinobacteria Rare + neg
Corynebacterium falsenii Actinobacteria Rare + neg neg neg + neg neg neg neg
Corynebacterium flavescens Actinobacteria Rare vr neg neg neg neg + neg
Corynebacterium freneyi Actinobacteria Rare + neg neg neg neg neg neg
Corynebacterium genitalium Actinobacteria Rare +
Corynebacterium glaucum Actinobacteria Rare + neg neg neg
Corynebacterium glucuronolyticum Actinobacteria Rare + neg
Corynebacterium glutamicum Actinobacteria Rare +
Corynebacterium ihumii Actinobacteria Rare + neg neg neg neg neg + neg neg
Corynebacterium jeddahense Actinobacteria Rare + neg neg neg neg neg neg neg neg
Corynebacterium jeikeium Actinobacteria Rare + neg neg neg neg neg neg
Corynebacterium kroppenstedtii Actinobacteria Minor + neg neg
Corynebacterium lipophiloflavum Actinobacteria Rare + neg
Corynebacterium lujinxingii Actinobacteria Rare +
Corynebacterium matruchotii Actinobacteria Unlikely +
Corynebacterium minutissimum Actinobacteria Rare + neg neg neg neg neg
Corynebacterium mucifaciens Actinobacteria Rare + neg neg neg + neg neg neg
Corynebacterium neomassiliense Actinobacteria Rare + neg neg neg neg neg neg neg neg
Corynebacterium otitidis Actinobacteria Rare + neg
Corynebacterium pacaense Actinobacteria Rare + neg neg neg neg w + neg neg
Corynebacterium propinquum Actinobacteria Rare + neg
Corynebacterium provencense Actinobacteria Rare +
Corynebacterium pseudodiphtheriticum Actinobacteria Rare +
Corynebacterium pseudogenitalium Actinobacteria Rare +
Corynebacterium pyruviciproducens Actinobacteria Rare + neg
Corynebacterium riegelii Actinobacteria Rare + neg neg neg neg neg neg neg neg
Corynebacterium sanguinis Actinobacteria Rare + neg
Corynebacterium simulans Actinobacteria Rare + neg neg neg neg neg neg neg neg
Corynebacterium singulare Actinobacteria Rare + neg
Corynebacterium stationis Actinobacteria Rare + neg neg
Corynebacterium striatum Actinobacteria Rare + d(neg) neg neg neg
Corynebacterium suicordis Actinobacteria Rare + neg neg neg neg neg neg neg
Corynebacterium sundsvallense Actinobacteria Rare + neg neg
Corynebacterium tuberculostearicum Actinobacteria Rare + + neg neg
Corynebacterium ulcerans Actinobacteria Rare + d
Corynebacterium urealyticum Actinobacteria Rare + neg neg
Corynebacterium ureicelerivorans Actinobacteria Rare + neg neg neg
Corynebacterium urinapleomorphum Actinobacteria Rare +
Corynebacterium variabile Actinobacteria Unlikely + neg neg neg neg neg neg neg
Corynebacterium wankanglinii Actinobacteria Rare +
Corynebacterium xerosis Actinobacteria Rare + neg neg neg neg neg neg
Crassaminicella thermophila Firmicutes Unlikely +
Criibacterium bergeronii Firmicutes Rare vr
Cronobacter condimenti Proteobacteria Unlikely neg neg + neg +
Cronobacter muytjensii Proteobacteria Rare neg + +
Cronobacter sakazakii Proteobacteria Minor neg neg + + neg
Cronobacter turicensis Proteobacteria Rare neg neg + + neg
Cruoricaptor ignavus Bacteroidetes Rare neg neg neg neg
Cryptobacterium curtum Actinobacteria Minor +
Culturomica massiliensis Bacteroidetes Rare neg
Cupriavidus metallidurans Proteobacteria Unlikely neg neg neg neg neg neg neg
Curtobacterium flaccumfaciens Actinobacteria Unlikely + neg
Cutibacterium acnes Actinobacteria Moderate + neg neg
Cutibacterium acnes subsp. defendens Actinobacteria Rare + d(+) neg
Cutibacterium avidum Actinobacteria Rare + + neg + + + neg neg
Cutibacterium granulosum Actinobacteria Minor +
Cytophaga hutchinsonii Bacteroidetes Rare neg
Dakarella massiliensis Proteobacteria Rare neg + neg
Dakotella fusiforme Firmicutes Rare +
Dehalobacter restrictus Firmicutes Non neg
Dehalobacterium formicoaceticum Firmicutes Unlikely +
Dehalococcoides mccartyi Chloroflexi Unlikely unk
Deinococcus aquaticus Deinococcus-Thermus Unlikely neg
Deinococcus caeni Deinococcus-Thermus Unlikely neg
Deinococcus geothermalis Deinococcus-Thermus Non +
Deinococcus proteolyticus Deinococcus-Thermus Unlikely +
Deinococcus reticulitermitis Deinococcus-Thermus Unlikely neg
Deinococcus wulumuqiensis Deinococcus-Thermus Unlikely +
Delftia acidovorans Proteobacteria Rare neg
Delftia lacustris Proteobacteria Unlikely neg
Delftia tsuruhatensis Proteobacteria Rare neg
Dellaglioa algida Firmicutes Rare + neg neg neg neg neg neg neg neg
Denitrobacterium detoxificans Actinobacteria Rare +
Dermabacter hominis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Dermacoccus barathri Actinobacteria Non + neg neg neg neg neg neg
Dermacoccus nishinomiyaensis Actinobacteria Rare + neg
Desemzia incerta Firmicutes Rare + neg neg
Desnuesiella massiliensis Firmicutes Rare + neg
Desulfitobacterium dichloroeliminans Firmicutes Unlikely +
Desulfitobacterium hafniense Firmicutes Minor neg neg neg neg
Desulfococcus multivorans Proteobacteria Rare neg
Desulfocurvibacter africanus Proteobacteria Unlikely neg
Desulfofarcimen acetoxidans Firmicutes Unlikely neg
Desulfomicrobium baculatum Proteobacteria Unlikely neg
Desulfomicrobium orale Proteobacteria Unlikely neg
Desulforamulus reducens Firmicutes Unlikely +
Desulforudis audaxviator Firmicutes Unlikely +
Desulfoscipio gibsoniae Firmicutes Rare neg
Desulfosporosinus youngiae Firmicutes Rare neg
Desulfotomaculum ruminis Firmicutes Unlikely +
Desulfovibrio desulfuricans Proteobacteria Minor neg
Desulfovibrio diazotrophicus Proteobacteria Rare neg
Desulfovibrio fairfieldensis Proteobacteria Minor neg
Desulfovibrio intestinalis Proteobacteria Rare neg
Desulfovibrio legallii Proteobacteria Rare +
Desulfovibrio longreachensis Proteobacteria Rare neg
Desulfovibrio piger Proteobacteria Moderate neg
Desulfovibrio trichonymphae Proteobacteria Non unk
Desulfovibrio vulgaris Proteobacteria Rare neg
Desulfurispirillum indicum Chrysiogenetes Unlikely neg
Desulfurobacterium thermolithotrophum Aquificae Non neg
Devosia chinhatensis Proteobacteria Rare neg
Devosia limi Proteobacteria Unlikely neg
Devosia riboflavina Proteobacteria Unlikely neg neg neg
Dialister hominis Firmicutes Rare neg
Dialister invisus Firmicutes Moderate neg neg neg
Dialister massiliensis Firmicutes Rare neg
Dialister micraerophilus Firmicutes Rare neg
Dialister pneumosintes Firmicutes Minor neg
Dialister propionicifaciens Firmicutes Rare neg
Dialister succinatiphilus Firmicutes Minor neg
Dielma fastidiosa Firmicutes Minor neg neg
Dietzia cercidiphylli Actinobacteria Unlikely +
Dietzia cinnamea Actinobacteria Rare + neg neg
Dietzia kunjamensis Actinobacteria Unlikely + + neg
Dietzia maris Actinobacteria Rare + + neg neg
Dietzia natronolimnaea Actinobacteria Rare + neg
Dolosigranulum pigrum Firmicutes Unlikely + neg d
Dorea faecis Firmicutes Minor
Dorea formicigenerans Firmicutes Widespread + neg neg neg neg
Dorea hylemonae Firmicutes Rare
Dorea longicatena Firmicutes Widespread + neg neg neg neg + neg + w
Dorea phocaeensis Firmicutes Rare neg neg neg neg neg neg neg neg neg
Dorea scindens Firmicutes Rare
Drancourtella massiliensis Firmicutes Rare +
Dubosiella newyorkensis Firmicutes Rare +
Duncaniella dubosii Bacteroidetes Unlikely neg neg neg neg
Duncaniella muris Bacteroidetes Rare neg neg neg neg
Duodenibacillus massiliensis Proteobacteria Minor +
Dyadobacter beijingensis Bacteroidetes Unlikely neg
Dyadobacter fermentans Bacteroidetes Unlikely neg
Dysgonomonas capnocytophagoides Bacteroidetes Rare neg neg neg neg neg neg
Dysgonomonas gadei Bacteroidetes Rare neg neg neg neg vr neg neg neg
Dysgonomonas massiliensis Bacteroidetes Rare neg +
Dysgonomonas mossii Bacteroidetes Rare neg w w
Dysosmobacter welbionis Firmicutes Moderate neg neg neg neg neg + neg neg neg
Edwardsiella tarda Proteobacteria Minor neg neg neg neg
Eggerthella guodeyinii Actinobacteria Rare +
Eggerthella lenta Actinobacteria Widespread + neg neg neg neg
Eggerthella sinensis Actinobacteria Rare +
Eggerthella timonensis Actinobacteria Rare + + + +
Eggerthia catenaformis Firmicutes Minor + neg neg neg neg d(neg) neg
Eikenella corrodens Proteobacteria Rare neg
Eisenbergiella massiliensis Firmicutes Moderate neg
Eisenbergiella tayi Firmicutes Moderate neg neg
Elizabethkingia meningoseptica Bacteroidetes Unlikely neg neg neg w(+) w(+)
Elizabethkingia miricola Bacteroidetes Non neg d +
Ellagibacter isourolithinifaciens Actinobacteria Rare +
Elusimicrobium minutum Elusimicrobia Unlikely neg neg neg neg neg neg neg neg neg
Emergencia timonensis Firmicutes Minor +
Empedobacter brevis Bacteroidetes Rare neg neg neg neg neg neg neg
Empedobacter falsenii Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Enhydrobacter aerosaccus Proteobacteria Rare neg
Enorma massiliensis Actinobacteria Minor +
Enorma phocaeensis Actinobacteria Rare neg
Enorma timonensis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Ensifer adhaerens Proteobacteria Unlikely neg
Enterobacter asburiae Proteobacteria Minor neg neg neg neg w neg + neg
Enterobacter cancerogenus Proteobacteria Minor neg vr neg d(neg) neg + neg
Enterobacter cloacae Proteobacteria Moderate neg vr neg + neg
Enterobacter cloacae subsp. dissolvens Proteobacteria Rare neg
Enterobacter himalayensis Proteobacteria Minor
Enterobacter hormaechei subsp. hormaechei Proteobacteria Minor neg neg neg + d
Enterobacter hormaechei subsp. steigerwaltii Proteobacteria Rare neg + neg + d
Enterobacter hormaechei subsp. xiangfangensis Proteobacteria Rare neg neg neg neg + neg + + neg
Enterobacter kobei Proteobacteria Rare neg neg d d d(+) + + neg
Enterobacter ludwigii Proteobacteria Rare neg + +
Enterobacter massiliensis Proteobacteria Rare neg neg neg neg neg neg + + neg
Enterobacter mori Proteobacteria Rare neg
Enterobacter roggenkampii Proteobacteria Rare neg
Enterobacter soli Proteobacteria Rare neg neg + +
Enterobacter timonensis Proteobacteria Rare neg
Enterocloster aldenensis Firmicutes Minor + neg neg
Enterocloster asparagiformis Firmicutes Moderate +
Enterocloster bolteae Firmicutes Widespread + neg + neg +
Enterocloster citroniae Firmicutes Moderate + neg neg
Enterocloster clostridioformis Firmicutes Widespread + + neg neg neg
Enterocloster lavalensis Firmicutes Minor + neg neg neg neg neg w
Enterococcus asini Firmicutes Rare + neg neg neg neg neg neg neg neg
Enterococcus avium Firmicutes Minor + + + neg d neg + + +
Enterococcus burkinafasonensis Firmicutes Rare + neg neg neg neg neg + neg neg
Enterococcus caccae Firmicutes Rare + neg neg neg + neg neg neg neg
Enterococcus canintestini Firmicutes Rare + neg neg neg neg neg neg neg neg
Enterococcus canis Firmicutes Rare + neg neg neg + + neg neg
Enterococcus casseliflavus Firmicutes Moderate + neg neg neg neg neg d(neg) vr neg
Enterococcus cecorum Firmicutes Rare + neg neg neg + neg vr vr neg
Enterococcus columbae Firmicutes Rare + neg neg neg neg neg + + d
Enterococcus devriesei Firmicutes Moderate + d neg neg d neg + d neg
Enterococcus diestrammenae Firmicutes Rare + neg neg neg neg neg neg neg neg
Enterococcus dispar Firmicutes Rare + neg neg neg neg neg neg neg neg
Enterococcus durans Firmicutes Moderate + neg neg neg + neg + + neg
Enterococcus eurekensis Firmicutes Rare + neg
Enterococcus faecalis Firmicutes Widespread + neg neg neg vr neg + d(+) neg
Enterococcus faecium Firmicutes Widespread + neg neg neg vr neg neg vr neg
Enterococcus gallinarum Firmicutes Rare + neg neg neg vr neg + vr neg
Enterococcus gilvus Firmicutes Rare + + + +
Enterococcus haemoperoxidus Firmicutes Rare + neg neg neg + neg d neg neg
Enterococcus hermanniensis Firmicutes Rare + neg neg neg neg neg + neg neg
Enterococcus hirae Firmicutes Minor + neg neg neg vr neg + vr neg
Enterococcus italicus Firmicutes Rare + neg neg neg neg neg d d neg
Enterococcus lactis Firmicutes Rare + neg neg neg neg neg + neg neg
Enterococcus malodoratus Firmicutes Rare + + + neg vr neg + + +
Enterococcus massiliensis Firmicutes Rare + neg neg
Enterococcus mediterraneensis Firmicutes Rare + neg neg neg + neg neg neg neg
Enterococcus moraviensis Firmicutes Rare + neg neg neg + d + neg neg
Enterococcus mundtii Firmicutes Rare + neg neg neg vr neg vr vr neg
Enterococcus pallens Firmicutes Rare + neg + + +
Enterococcus phoeniculicola Firmicutes Rare + + w neg w w w w +
Enterococcus pseudoavium Firmicutes Rare + neg neg neg neg neg + + neg
Enterococcus raffinosus Firmicutes Rare + d neg + + + +
Enterococcus saccharolyticus Firmicutes Rare + neg neg neg neg neg + + neg
Enterococcus saigonensis Firmicutes Unlikely + neg neg neg + neg neg neg neg
Enterococcus sulfureus Firmicutes Rare + neg neg neg neg neg neg neg neg
Enterococcus thailandicus Firmicutes Rare + neg + neg + neg + neg neg
Enterococcus timonensis Firmicutes Rare + neg neg neg + neg + neg neg
Enterococcus villorum Firmicutes Rare + neg neg neg w neg neg neg neg
Enteroscipio rubneri Actinobacteria Rare + neg neg neg
Enterovibrio nigricans Proteobacteria Unlikely neg neg + +
Ereboglobus luteus Verrucomicrobia Unlikely neg
Erwinia billingiae Proteobacteria Unlikely neg neg neg neg neg d + d(+) neg
Erwinia tasmaniensis Proteobacteria Unlikely neg
Erwinia teleogrylli Proteobacteria Rare neg neg neg neg + neg + + neg
Erysipelatoclostridium ramosum Firmicutes Widespread + neg neg neg neg neg d neg neg
Erysipelatoclostridium saccharogumia Firmicutes Minor
Erysipelatoclostridium spiroforme Firmicutes Minor
Erysipelothrix larvae Firmicutes Rare +
Escherichia albertii Proteobacteria Minor neg neg neg neg neg + neg
Escherichia coli Proteobacteria Widespread neg neg d neg d(+) neg + + neg
Escherichia dysenteriae Proteobacteria Rare
Escherichia fergusonii Proteobacteria Minor neg + d neg w neg + neg
Escherichia marmotae Proteobacteria Unlikely neg neg neg + neg + + neg
Escherichia ruysiae Proteobacteria Rare neg neg +
Ethanoligenens harbinense Firmicutes Rare + neg neg neg neg neg neg
Eubacterium barkeri Firmicutes Rare + neg neg neg neg + +
Eubacterium biforme Firmicutes Moderate + neg neg d neg
Eubacterium brachy Firmicutes Rare + neg neg neg neg neg
Eubacterium callanderi Firmicutes Minor +
Eubacterium cellulosolvens Firmicutes Minor + neg neg neg neg neg neg
Eubacterium coprostanoligenes Firmicutes Minor +
Eubacterium dolichum Firmicutes Moderate + neg neg
Eubacterium infirmum Firmicutes Rare + neg
Eubacterium limosum Firmicutes Moderate + + neg + neg neg + neg
Eubacterium maltosivorans Firmicutes Rare +
Eubacterium multiforme Firmicutes Rare + neg neg neg neg neg neg
Eubacterium nodatum Firmicutes Rare + neg neg neg neg neg neg neg
Eubacterium oxidoreducens Firmicutes Rare +
Eubacterium plexicaudatum Firmicutes Rare + neg neg neg neg neg neg neg
Eubacterium pyruvativorans Firmicutes Rare + neg neg
Eubacterium ramulus Firmicutes Moderate + neg neg neg d(+) w(+)
Eubacterium rectale Firmicutes Widespread + d(+) w +
Eubacterium ruminantium Firmicutes Rare + neg neg
Eubacterium saphenum Firmicutes Rare + neg neg neg neg neg
Eubacterium siraeum Firmicutes Widespread + neg neg
Eubacterium sulci Firmicutes Rare + neg neg neg neg neg neg neg
Eubacterium tenue Firmicutes Minor + neg neg
Eubacterium uniforme Firmicutes Rare + neg neg neg neg
Eubacterium ventriosum Firmicutes Widespread + neg neg neg neg
Eubacterium xylanophilum Firmicutes Rare + neg neg neg neg
Eubacterium yurii Firmicutes Rare + neg neg neg neg neg
Ewingella americana Proteobacteria Rare neg neg neg + neg + neg
Exiguobacterium aurantiacum Firmicutes Rare + neg neg neg + neg + neg neg
Exiguobacterium marinum Firmicutes Rare vr neg neg + neg
Exiguobacterium mexicanum Firmicutes Rare + neg neg neg w neg + neg neg
Exiguobacterium undae Firmicutes Rare + neg neg neg + neg + neg neg
Ezakiella coagulans Bacteroidetes Minor neg neg neg neg
Ezakiella massiliensis Bacteroidetes Rare +
Ezakiella peruensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Facklamia hominis Firmicutes Rare + neg neg
Facklamia languida Firmicutes Rare + neg neg
Faecalibacillus faecis Firmicutes Rare + neg neg neg
Faecalibacillus intestinalis Firmicutes Rare + neg neg neg
Faecalibacterium prausnitzii Firmicutes Widespread neg neg
Faecalibaculum rodentium Firmicutes Rare +
Faecalicatena contorta Firmicutes Minor + neg d neg neg neg neg neg
Faecalicatena faecis Firmicutes Moderate
Faecalicatena fissicatena Firmicutes Minor + neg neg neg
Faecalicatena glycyrrhizinilyticum Firmicutes Minor
Faecalicatena gnavus Firmicutes Moderate
Faecalicatena lactaris Firmicutes Moderate
Faecalicatena orotica Firmicutes Minor + + vr neg + neg vr
Faecalicatena torques Firmicutes Moderate
Faecalicoccus pleomorphus Firmicutes Minor + neg neg
Faecalimonas umbilicata Firmicutes Rare + neg neg neg
Faecalitalea cylindroides Firmicutes Widespread + neg neg neg neg neg
Fannyhessea vaginae Actinobacteria Minor +
Fastidiosipila sanguinis Firmicutes Rare +
Fenollaria massiliensis Firmicutes Minor neg
Fenollaria timonensis Firmicutes Rare neg
Fermentimonas caenicola Bacteroidetes Rare neg
Ferrimonas balearica Proteobacteria Rare neg
Fibrobacter succinogenes Fibrobacteres Unlikely neg neg neg neg neg neg
Fictibacillus arsenicus Firmicutes Unlikely + neg neg neg neg neg
Filifactor alocis Firmicutes Minor neg neg neg neg neg neg neg neg
Filifactor villosus Firmicutes Unlikely + neg
Finegoldia magna Firmicutes Widespread + neg neg
Flaviflexus massiliensis Actinobacteria Rare +
Flavobacterium banpakuense Bacteroidetes Unlikely neg
Flavobacterium caeni Bacteroidetes Non neg
Flavobacterium cheniae Bacteroidetes Rare neg
Flavobacterium daejeonense Bacteroidetes Unlikely neg
Flavobacterium lindanitolerans Bacteroidetes Rare neg
Flavobacterium oncorhynchi Bacteroidetes Unlikely neg
Flavobacterium sakaeratica Bacteroidetes Rare neg
Flavonifractor plautii Firmicutes Widespread vr neg neg neg neg neg
Flexispira rappini Proteobacteria Rare neg
Flintibacter butyricus Firmicutes Rare neg neg neg neg
Fournierella massiliensis Firmicutes Moderate neg neg neg neg + neg neg neg neg
Francisella tularensis Proteobacteria Non neg +
Franconibacter pulveris Proteobacteria Rare neg neg neg + neg
Fredinandcohnia humi Firmicutes Non + neg neg neg neg neg neg neg neg
Fretibacterium fastidiosum Synergistetes Rare neg
Fructilactobacillus florum Firmicutes Unlikely + neg neg neg neg neg neg neg
Fructilactobacillus fructivorans Firmicutes Unlikely + d d
Fructilactobacillus sanfranciscensis Firmicutes Rare + neg neg
Fucophilus fucoidanolyticus Verrucomicrobia Rare neg
Fundidesulfovibrio putealis Proteobacteria Rare neg
Furfurilactobacillus rossiae Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Fusicatenibacter saccharivorans Firmicutes Moderate + neg neg +
Fusobacterium canifelinum Fusobacteria Rare neg
Fusobacterium gonidiaformans Fusobacteria Minor neg
Fusobacterium massiliense Fusobacteria Rare neg
Fusobacterium mortiferum Fusobacteria Moderate neg neg neg
Fusobacterium naviforme Fusobacteria Rare neg
Fusobacterium necrogenes Fusobacteria Rare neg
Fusobacterium necrophorum Fusobacteria Minor neg
Fusobacterium necrophorum subsp. funduliforme Fusobacteria Rare neg neg
Fusobacterium nucleatum Fusobacteria Minor neg neg neg
Fusobacterium nucleatum subsp. animalis Fusobacteria Rare neg neg neg neg neg neg neg
Fusobacterium nucleatum subsp. nucleatum Fusobacteria Minor neg neg neg neg neg
Fusobacterium nucleatum subsp. polymorphum Fusobacteria Rare neg neg neg neg neg neg
Fusobacterium nucleatum subsp. vincentii Fusobacteria Rare neg neg neg neg neg neg
Fusobacterium perfoetens Fusobacteria Rare neg neg neg neg
Fusobacterium periodonticum Fusobacteria Minor neg neg neg neg
Fusobacterium pseudoperiodonticum Fusobacteria Unlikely neg
Fusobacterium russii Fusobacteria Minor neg
Fusobacterium ulcerans Fusobacteria Rare neg
Fusobacterium varium Fusobacteria Moderate neg neg neg neg
Gabonia massiliensis Bacteroidetes Rare neg neg + neg neg
Gabonibacter massiliensis Bacteroidetes Minor neg
Gabonibacter timonensis Bacteroidetes Rare +
Gallibacterium anatis Proteobacteria Rare neg neg neg neg + d + d neg
Gardnerella leopoldii Actinobacteria Unlikely neg
Gardnerella vaginalis Actinobacteria Minor neg neg neg neg neg neg
Gemella asaccharolytica Firmicutes Rare vr neg neg
Gemella haemolysans Firmicutes Minor + neg neg
Gemella morbillorum Firmicutes Minor + neg neg neg neg neg d(w) w neg
Gemella sanguinis Firmicutes Minor + neg neg neg neg neg + + neg
Gemmatimonas groenlandica Gemmatimonadetes Non neg
Gemmiger formicilis Firmicutes Moderate neg neg neg neg neg neg neg neg
Gemmiger variabile Firmicutes Moderate
Geobacillus stearothermophilus Firmicutes Unlikely + neg neg neg + neg neg neg neg
Geobacillus vulcani Firmicutes Unlikely + neg + neg neg neg neg
Geodermatophilus obscurus Actinobacteria Non + +
Georgenia muralis Actinobacteria Rare + neg
Georgenia satyanarayanai Actinobacteria Unlikely +
Geosporobacter ferrireducens Firmicutes Unlikely neg
Gleimia europaea Actinobacteria Rare + d neg neg neg
Globicatella sulfidifaciens Firmicutes Rare vr neg neg neg neg neg neg neg neg
Glutamicibacter arilaitensis Actinobacteria Unlikely + neg
Glutamicibacter protophormiae Actinobacteria Rare +
Gorbachella massiliensis Firmicutes Rare neg
Gordonia alkanivorans Actinobacteria Rare + + + +
Gordonia rubripertincta Actinobacteria Unlikely + neg
Gordonia terrae Actinobacteria Rare + neg + +
Gordonibacter massiliensis Actinobacteria Rare + neg neg neg + neg + + neg
Gordonibacter pamelaeae Actinobacteria Moderate + neg neg neg
Gordonibacter urolithinfaciens Actinobacteria Minor + neg neg neg
Gorillibacterium timonense Firmicutes Rare neg
Gottschalkia acidurici Firmicutes Unlikely +
Gracilibacillus dipsosauri Firmicutes Rare + w w
Gracilibacillus massiliensis Firmicutes Rare + neg neg
Gracilibacillus phocaeensis Firmicutes Rare +
Gracilibacillus thailandensis Firmicutes Non + + neg + neg
Gracilibacillus timonensis Firmicutes Rare +
Granulicatella adiacens Firmicutes Minor + neg neg
Granulicatella elegans Firmicutes Minor + neg neg
Granulicatella para-adiacens Firmicutes Rare +
Grimontia hollisae Proteobacteria Rare neg neg neg neg neg neg neg neg
Gulosibacter bifidus Actinobacteria Unlikely + neg neg neg
Haemophilus ducreyi Proteobacteria Rare neg neg neg neg neg neg neg
Haemophilus haemolyticus Proteobacteria Minor neg neg neg neg neg neg neg
Haemophilus influenzae Proteobacteria Minor neg neg neg neg neg neg neg neg
Haemophilus parahaemolyticus Proteobacteria Minor neg neg neg neg neg neg neg neg neg
Haemophilus parainfluenzae Proteobacteria Widespread neg neg neg neg d neg neg neg
Haemophilus paraphrohaemolyticus Proteobacteria Rare neg neg neg neg neg d neg neg
Haemophilus pittmaniae Proteobacteria Minor neg neg neg
Haemophilus quentini Proteobacteria Rare neg
Haemophilus sputorum Proteobacteria Minor neg
Hafnia alvei Proteobacteria Minor neg neg neg + neg
Hafnia paralvei Proteobacteria Rare neg neg neg + neg + neg
Hahella ganghwensis Proteobacteria Rare neg
Halanaerobaculum tunisiense Firmicutes Unlikely neg
Halobacillus dabanensis Firmicutes Unlikely + +
Halobacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg
Halobacillus karajensis Firmicutes Non + +
Halobacillus massiliensis Firmicutes Unlikely +
Halobacillus salinus Firmicutes Rare + neg neg + neg
Halobacillus trueperi Firmicutes Unlikely + neg
Halobacteroides halobius Firmicutes Unlikely neg
Haloferax alexandrinus Euryarchaeota Unlikely neg +
Haloferax massiliensis Euryarchaeota Rare neg
Haloimpatiens massiliensis Firmicutes Rare + neg + neg neg + + + +
Halomonas massiliensis Proteobacteria Rare neg
Halomonas muralis Proteobacteria Non neg
Halomonas salina Proteobacteria Non neg neg neg d(neg) neg
Halomonas utahensis Proteobacteria Unlikely neg
Halopseudomonas bauzanensis Proteobacteria Unlikely neg neg neg neg
Halopseudomonas pelagia Proteobacteria Unlikely neg
Haploplasma axanthum Tenericutes Unlikely neg neg + neg neg
Harryflintia acetispora Firmicutes Rare neg neg
Hathewaya histolytica Firmicutes Rare +
Hathewaya limosa Firmicutes Rare + neg neg neg neg neg neg neg
Hathewaya massiliensis Firmicutes Rare + + + + + + + + +
Helcobacillus massiliensis Actinobacteria Rare + neg neg + w + + neg neg
Helcococcus sueciensis Firmicutes Rare + neg +
Helicobacter bilis Proteobacteria Unlikely neg
Helicobacter canadensis Proteobacteria Unlikely neg
Helicobacter canis Proteobacteria Unlikely neg
Helicobacter cinaedi Proteobacteria Rare neg
Helicobacter felis Proteobacteria Non neg neg
Helicobacter fennelliae Proteobacteria Rare neg
Helicobacter heilmannii Proteobacteria Non neg
Helicobacter macacae Proteobacteria Unlikely neg
Helicobacter pametensis Proteobacteria Rare neg
Helicobacter pullorum Proteobacteria Minor neg
Helicobacter pylori Proteobacteria Non neg
Helicobacter rodentium Proteobacteria Rare neg
Helicobacter winghamensis Proteobacteria Rare neg
Heliomicrobium modesticaldum Firmicutes Unlikely neg
Herbaspirillum autotrophicum Proteobacteria Unlikely neg
Herbaspirillum huttiense Proteobacteria Rare neg + neg + neg + w +
Herbinix hemicellulosilytica Firmicutes Unlikely +
Herbinix luporum Firmicutes Unlikely + neg
Herminiimonas contaminans Proteobacteria Unlikely neg
Hespellia porcina Firmicutes Rare +
Hespellia stercorisuis Firmicutes Rare +
Heyndrickxia oleronia Firmicutes Unlikely neg neg neg neg d neg + neg neg
Heyndrickxia sporothermodurans Firmicutes Unlikely + neg neg neg d neg d neg d(w)
Histophilus somni Proteobacteria Rare neg neg neg neg neg neg
Holdemanella biformis Firmicutes Moderate + + neg
Holdemania filiformis Firmicutes Moderate + neg neg neg neg
Holdemania massiliensis Firmicutes Minor + + + + +
Holophaga foetida Acidobacteria Non neg
Howardella ureilytica Firmicutes Rare +
Hugonella massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Humisphaera borealis Planctomycetes Unlikely neg
Hungatella effluvii Firmicutes Minor +
Hungatella hathewayi Firmicutes Widespread + neg +
Hungatella saccharolyticum Firmicutes Rare
Hungatella xylanolytica Firmicutes Rare neg
Hydrogenibacillus schlegelii Firmicutes Unlikely vr neg
Hydrogenoanaerobacterium saccharovorans Firmicutes Rare neg neg neg neg neg
Hydrogenophaga pseudoflava Proteobacteria Unlikely neg
Hydrogenovibrio crunogenus Proteobacteria Unlikely neg
Hymenobacter rigui Bacteroidetes Rare neg
Hymenobacter russus Bacteroidetes Unlikely neg
Hyphomicrobium facile Proteobacteria Rare neg
Ihubacter massiliensis Firmicutes Rare neg
Ihuprevotella massiliensis Bacteroidetes Rare neg
Ileibacterium valens Firmicutes Rare +
Inediibacterium massiliense Firmicutes Rare + neg neg +
Intestinibacillus massiliensis Firmicutes Rare neg
Intestinibacter bartlettii Firmicutes Widespread + +
Intestinibaculum porci Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Intestinimonas butyriciproducens Firmicutes Moderate +
Intestinimonas gabonensis Firmicutes Rare neg
Intestinimonas massiliensis Firmicutes Moderate neg neg neg neg neg neg neg neg +
Intestinimonas timonensis Firmicutes Rare neg
Isoptericola variabilis Actinobacteria Rare + neg neg neg neg neg neg
Janibacter anophelis Actinobacteria Rare + neg neg neg neg neg neg
Janibacter hoylei Actinobacteria Non + neg neg
Janibacter limosus Actinobacteria Unlikely + neg neg neg
Janibacter terrae Actinobacteria Rare + neg neg neg
Jeotgalibaca arthritidis Firmicutes Unlikely + neg neg neg neg neg neg
Jeotgalibaca porci Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Jeotgalicoccus halotolerans Firmicutes Rare + neg neg + neg
Johnsonella ignava Firmicutes Rare neg neg neg neg neg neg
Jonquetella anthropi Synergistetes Rare neg
Kalamiella piersonii Proteobacteria Unlikely neg
Kallipyga gabonensis Firmicutes Rare + neg
Kallipyga massiliensis Firmicutes Rare +
Kandleria vitulina Firmicutes Rare + neg neg neg neg
Kerstersia gyiorum Proteobacteria Rare neg
Khelaifiella massiliensis Firmicutes Rare +
Kineothrix alysoides Firmicutes Rare neg
Kingella denitrificans Proteobacteria Unlikely neg neg neg neg neg neg neg
Kingella kingae Proteobacteria Rare neg neg neg neg neg
Kingella oralis Proteobacteria Unlikely neg neg
Kiritimatiella glycovorans Kiritimatiellaeota Unlikely neg
Klebsiella aerogenes Proteobacteria Moderate neg + neg neg + + + +
Klebsiella grimontii Proteobacteria Minor neg
Klebsiella michiganensis Proteobacteria Minor neg + + +
Klebsiella oxytoca Proteobacteria Moderate neg + + + +
Klebsiella pneumoniae Proteobacteria Widespread neg d(+) d(neg) neg + + + +
Klebsiella pneumoniae subsp. ozaenae Proteobacteria Rare neg
Klebsiella pneumoniae subsp. rhinoscleromatis Proteobacteria Rare neg
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria Minor neg d neg neg + + + + neg
Klebsiella quasivariicola Proteobacteria Minor
Klebsiella variicola Proteobacteria Minor neg neg + + +
Kluyvera ascorbata Proteobacteria Minor neg neg neg neg w neg + neg
Kluyvera cryocrescens Proteobacteria Rare neg neg neg neg w neg d
Kluyvera georgiana Proteobacteria Rare neg neg d neg d neg + neg neg
Kluyvera intermedia Proteobacteria Rare neg neg + neg + neg + +
Kocuria carniphila Actinobacteria Unlikely + neg neg
Kocuria marina Actinobacteria Rare + neg neg neg neg
Kocuria palustris Actinobacteria Unlikely + neg vr neg neg
Kocuria polaris Actinobacteria Unlikely +
Kocuria rhizophila Actinobacteria Unlikely + neg neg neg
Kocuria rosea Actinobacteria Unlikely + + neg
Kocuria salsicia Actinobacteria Unlikely +
Kocuria varians Actinobacteria Rare + neg neg
Kosakonia cowanii Proteobacteria Minor neg neg + neg + neg + + neg
Krasilnikoviella flava Actinobacteria Rare +
Kurthia gibsonii Firmicutes Rare + neg neg neg + neg neg neg neg
Kurthia massiliensis Firmicutes Rare +
Kurthia senegalensis Firmicutes Rare +
Kurthia sp. Dielmo Firmicutes Rare +
Kurthia zopfii Firmicutes Rare + neg neg neg neg neg
Kushneria sinocarnis Firmicutes Unlikely neg + neg + +
Kytococcus schroeteri Actinobacteria Rare + neg neg neg
Kytococcus sedentarius Actinobacteria Rare + neg neg
Labilithrix luteola Proteobacteria Non neg
Lachnoanaerobaculum orale Firmicutes Rare +
Lachnoanaerobaculum saburreum Firmicutes Rare +
Lachnoanaerobaculum umeaense Firmicutes Rare +
Lachnobacterium bovis Firmicutes Rare + neg neg
Lachnoclostridium bouchesdurhonense Firmicutes Rare neg
Lachnoclostridium edouardi Firmicutes Minor +
Lachnoclostridium massiliosenegalense Firmicutes Rare +
Lachnoclostridium pacaense Firmicutes Rare vr neg
Lachnoclostridium phocaeense Firmicutes Rare + neg neg neg neg neg neg neg neg
Lachnoclostridium phytofermentans Firmicutes Minor neg
Lachnoclostridium touaregense Firmicutes Rare +
Lachnospira eligens Firmicutes Widespread + neg neg neg neg neg neg neg
Lachnospira multipara Firmicutes Rare + neg neg neg
Lachnospira pectinoschiza Firmicutes Minor +
Lachnospira rogosae Firmicutes Moderate
Lacrimispora aerotolerans Firmicutes Rare neg neg neg neg neg
Lacrimispora amygdalina Firmicutes Rare +
Lacrimispora celerecrescens Firmicutes Rare + + neg neg neg + neg
Lacrimispora indolis Firmicutes Minor neg neg neg neg
Lacrimispora saccharolytica Firmicutes Moderate neg
Lacrimispora sphenoides Firmicutes Minor + neg +
Lacticaseibacillus casei Firmicutes Rare + neg neg neg neg neg + neg neg
Lacticaseibacillus paracasei Firmicutes Minor + d(neg) d(neg) neg neg neg + d neg
Lacticaseibacillus paracasei subsp. tolerans Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lacticaseibacillus paragasseri Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lacticaseibacillus rhamnosus Firmicutes Moderate + neg d(neg) neg d(w) w + + neg
Lacticaseibacillus saniviri Firmicutes Unlikely + neg neg neg + neg + neg neg
Lacticaseibacillus sharpeae Firmicutes Unlikely + neg neg neg
Lacticaseibacillus zeae Firmicutes Unlikely + neg neg neg neg neg + neg neg
Lacticigenium naphtae Firmicutes Non vr
Lactiplantibacillus paraplantarum Firmicutes Rare + neg neg neg neg neg + d neg
Lactiplantibacillus pentosus Firmicutes Rare + neg neg neg + neg + + neg
Lactiplantibacillus plantarum Firmicutes Moderate + neg neg neg neg neg + d neg
Lactiplantibacillus xiangfangensis Firmicutes Rare + + neg neg neg neg + + neg
Lactobacillus acidophilus Firmicutes Widespread + neg neg neg neg neg neg neg neg
Lactobacillus amylolyticus Firmicutes Unlikely + neg neg
Lactobacillus amylovorus Firmicutes Minor + neg neg neg neg neg neg neg neg
Lactobacillus crispatus Firmicutes Moderate + neg neg neg neg neg neg neg neg
Lactobacillus delbrueckii subsp. bulgaricus Firmicutes Rare + neg neg
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes Minor + neg neg neg neg neg neg neg neg
Lactobacillus delbrueckii subsp. lactis Firmicutes Unlikely + neg neg
Lactobacillus equicursoris Firmicutes Rare + + neg
Lactobacillus gasseri Firmicutes Moderate + neg neg neg neg neg neg neg neg
Lactobacillus gigeriorum Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lactobacillus hamsteri Firmicutes Rare + neg neg
Lactobacillus helveticus Firmicutes Rare + neg neg neg neg neg neg neg neg
Lactobacillus hominis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lactobacillus iners Firmicutes Rare + neg neg neg neg neg neg neg neg
Lactobacillus intestinalis Firmicutes Unlikely + + neg
Lactobacillus jensenii Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lactobacillus johnsonii Firmicutes Minor + neg neg neg neg neg neg neg neg
Lactobacillus kalixensis Firmicutes Minor + neg neg neg neg neg vr neg neg
Lactobacillus kefiranofaciens Firmicutes Rare + neg neg neg neg neg neg neg neg
Lactobacillus leichmannii Firmicutes Rare + neg neg
Lactobacillus pasteurii Firmicutes Unlikely + neg neg neg neg neg + neg
Lactobacillus psittaci Firmicutes Unlikely + neg neg
Lactobacillus rogosae Firmicutes Rare + neg neg neg
Lactobacillus timonensis Firmicutes Unlikely +
Lactobacillus ultunensis Firmicutes Minor + neg neg neg neg neg neg neg neg
Lactococcus cremoris Firmicutes Rare + neg neg neg neg neg neg neg neg
Lactococcus garvieae Firmicutes Minor + neg neg neg neg neg vr neg neg
Lactococcus lactis subsp. lactis Firmicutes Widespread + neg neg neg neg neg vr neg neg
Lactococcus petauri Firmicutes Rare + w
Lactococcus plantarum Firmicutes Rare + neg neg neg neg neg + + neg
Lactococcus raffinolactis Firmicutes Minor + neg neg neg neg neg vr neg neg
Lactonifactor longoviformis Firmicutes Minor neg
Lacunisphaera limnophila Verrucomicrobia Unlikely neg
Lagierella massiliensis Firmicutes Rare + + + + + +
Lancefieldella parvula Actinobacteria Minor + neg neg neg neg neg
Lancefieldella rimae Actinobacteria Minor + neg neg neg neg neg
Lapidilactobacillus dextrinicus Firmicutes Non + neg neg neg neg neg neg neg
Laribacter hongkongensis Proteobacteria Rare neg
Lascolabacillus massiliensis Bacteroidetes Rare neg
Latilactobacillus curvatus Firmicutes Minor + neg neg neg neg neg neg neg neg
Latilactobacillus sakei Firmicutes Minor + neg neg neg neg neg neg neg neg
Latilactobacillus sakei subsp. carnosus Firmicutes Rare + neg neg neg
Lautropia mirabilis Proteobacteria Minor neg neg neg neg + neg
Lawsonella clevelandensis Actinobacteria Rare vr
Lawsonia intracellularis Proteobacteria Unlikely neg
Lawsonibacter asaccharolyticus Firmicutes Moderate + neg neg neg
Leclercia adecarboxylata Proteobacteria Rare neg + + neg neg + neg neg
Lederbergia galactosidilyticus Firmicutes Rare + neg neg neg neg neg d neg neg
Lederbergia lentus Firmicutes Unlikely + neg neg neg neg d w d neg
Legionella bozemanae Proteobacteria Non neg
Legionella pneumophila Proteobacteria Non neg
Lelliottia amnigena Proteobacteria Rare neg neg neg neg neg neg + d
Lelliottia nimipressuralis Proteobacteria Rare neg neg neg neg d + +
Leminorella grimontii Proteobacteria Rare neg neg w neg d(neg) neg neg neg
Leminorella richardii Proteobacteria Rare neg neg neg neg neg neg neg neg
Lentibacillus massiliensis Firmicutes Rare +
Lentibacillus timonensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Lentilactobacillus buchneri subsp. buchneri Firmicutes Minor + neg neg neg neg neg neg neg neg
Lentilactobacillus diolivorans Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lentilactobacillus farraginis Firmicutes Unlikely + neg neg
Lentilactobacillus hilgardii Firmicutes Rare + neg neg neg neg neg neg neg neg
Lentilactobacillus kefiri Firmicutes Non + neg neg neg neg neg neg neg neg
Lentilactobacillus kisonensis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lentilactobacillus otakiensis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Lentilactobacillus parabuchneri Firmicutes Rare + neg neg neg neg neg neg neg
Lentilactobacillus parafarraginis Firmicutes Unlikely + neg neg
Lentilactobacillus senioris Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Leptospira interrogans Spirochaetes Non neg
Leptotrichia amnionii Fusobacteria Rare neg
Leptotrichia buccalis Fusobacteria Rare neg neg neg neg neg neg neg neg neg
Leptotrichia hofstadii Fusobacteria Rare neg
Leptotrichia hongkongensis Fusobacteria Rare vr
Leptotrichia massiliensis Fusobacteria Rare +
Leptotrichia shahii Fusobacteria Rare neg
Leptotrichia wadei Fusobacteria Rare neg
Leucobacter aridicollis Actinobacteria Unlikely +
Leuconostoc carnosum Firmicutes Unlikely + neg neg neg neg neg neg
Leuconostoc citreum Firmicutes Minor + neg neg neg neg neg d(+) neg neg
Leuconostoc gelidum Firmicutes Rare + neg neg neg neg neg neg neg neg
Leuconostoc gelidum subsp. gasicomitatum Firmicutes Non + neg neg neg neg neg neg neg neg
Leuconostoc holzapfelii Firmicutes Rare + neg neg neg neg neg neg neg neg
Leuconostoc inhae Firmicutes Unlikely + neg neg neg neg + neg neg
Leuconostoc kimchii Firmicutes Rare + + neg
Leuconostoc lactis Firmicutes Minor + neg neg neg neg neg neg neg neg
Leuconostoc mesenteroides subsp. cremoris Firmicutes Rare + neg neg neg neg neg d neg
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes Minor + neg neg neg neg neg vr neg neg
Leuconostoc pseudomesenteroides Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Levilactobacillus brevis Firmicutes Minor + neg neg neg neg neg neg neg neg
Levilactobacillus brevis subsp. gravesensis Firmicutes Unlikely +
Levilactobacillus namurensis Firmicutes Unlikely + neg neg neg neg neg + neg neg
Levilactobacillus parabrevis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Levyella massiliensis Firmicutes Rare + neg neg neg
Ligilactobacillus acidipiscis Firmicutes Unlikely + neg neg neg d neg neg neg neg
Ligilactobacillus agilis Firmicutes Rare + neg neg neg neg neg + neg neg
Ligilactobacillus animalis Firmicutes Minor + neg neg neg neg neg neg neg neg
Ligilactobacillus ceti Firmicutes Unlikely + neg neg neg neg neg neg
Ligilactobacillus equi Firmicutes Unlikely + neg neg neg neg neg + d neg
Ligilactobacillus murinus Firmicutes Rare + d neg
Ligilactobacillus pobuzihii Firmicutes Unlikely + neg neg neg + neg neg neg neg
Ligilactobacillus ruminis Firmicutes Widespread + neg neg neg neg neg neg neg neg
Ligilactobacillus salivarius Firmicutes Widespread + neg neg neg neg neg + vr neg
Limnobacter thiooxidans Proteobacteria Unlikely neg
Limnochorda pilosa Firmicutes Unlikely neg
Limosilactobacillus antri Firmicutes Rare + neg neg neg neg neg w neg neg
Limosilactobacillus caccae Firmicutes Rare + + + neg neg
Limosilactobacillus coleohominis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Limosilactobacillus fermentum Firmicutes Widespread + neg neg neg neg neg neg neg neg
Limosilactobacillus frumenti Firmicutes Non + + +
Limosilactobacillus gastricus Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Limosilactobacillus ingluviei Firmicutes Non + neg neg neg neg neg neg neg neg
Limosilactobacillus mucosae Firmicutes Rare + neg neg neg neg neg neg neg neg
Limosilactobacillus oris Firmicutes Minor + neg neg neg neg neg neg neg neg
Limosilactobacillus reuteri Firmicutes Minor + neg neg neg neg neg neg neg neg
Limosilactobacillus vaginalis Firmicutes Rare + neg neg neg neg neg neg neg neg
Limosilactobacillus walteri Firmicutes Rare +
Liquorilactobacillus mali Firmicutes Unlikely + neg neg neg neg neg +
Liquorilactobacillus satsumensis Firmicutes Non + +
Liquorilactobacillus vini Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Listeria floridensis Firmicutes Rare + neg neg neg neg
Listeria grayi Firmicutes Rare + + d(+) neg + neg + neg d
Listeria innocua Firmicutes Rare + neg neg vr + neg neg neg d(+)
Listeria ivanovii Firmicutes Rare + neg neg neg + neg neg neg d
Listeria marthii Firmicutes Rare +
Listeria monocytogenes Firmicutes Rare + neg neg neg + neg neg neg +
Listeria seeligeri Firmicutes Rare + + neg neg +
Listeria welshimeri Firmicutes Rare + neg neg neg + neg neg neg +
Litchfieldia alkalitelluris Firmicutes Rare + neg neg neg neg
Loigolactobacillus bifermentans Firmicutes Unlikely + + d
Loigolactobacillus coryniformis Firmicutes Minor + neg neg neg neg neg + d(neg) neg
Loigolactobacillus coryniformis subsp. torquens Firmicutes Unlikely + + neg
Longicatena caecimuris Firmicutes Rare +
Lutispora thermophila Firmicutes Unlikely neg
Luxibacter massiliensis Firmicutes Rare + neg neg neg neg neg + + neg
Lysinibacillus boronitolerans Firmicutes Rare + neg neg neg neg neg neg neg neg
Lysinibacillus fusiformis Firmicutes Rare vr
Lysinibacillus macroides Firmicutes Unlikely vr
Lysinibacillus meyeri Firmicutes Unlikely + neg neg neg + neg + neg neg
Lysinibacillus sphaericus Firmicutes Rare + neg neg neg neg neg neg neg neg
Lysinibacillus varians Firmicutes Rare +
Lysinibacillus xylanilyticus Firmicutes Rare + neg neg neg + neg neg neg neg
Lysobacter soli Proteobacteria Rare neg
Macellibacteroides fermentans Bacteroidetes Rare + + + +
Macrococcus caseolyticus Firmicutes Unlikely + + neg neg neg
Mageeibacillus indolicus Firmicutes Rare vr
Mahella australiensis Firmicutes Unlikely +
Mailhella massiliensis Proteobacteria Rare neg
Mameliella alba Proteobacteria Unlikely neg neg neg
Mammaliicoccus fleurettii Firmicutes Rare + neg
Mammaliicoccus lentus Firmicutes Rare + neg neg neg + neg + d(+) neg
Mammaliicoccus sciuri Firmicutes Rare + +
Mammaliicoccus vitulinus Firmicutes Unlikely + d neg neg
Mannheimia granulomatis Proteobacteria Rare neg neg neg d + +
Mannheimia haemolytica Proteobacteria Rare neg neg d + +
Mannheimia succiniciproducens Proteobacteria Rare neg
Marasmitruncus massiliensis Firmicutes Rare +
Marseilla massiliensis Bacteroidetes Rare neg
Marseillibacter massiliensis Firmicutes Rare neg
Marvinbryantia formatexigens Firmicutes Moderate +
Massilia aurea Proteobacteria Unlikely neg
Massilia brevitalea Proteobacteria Non neg
Massilia haematophila Proteobacteria Rare neg
Massilia norwichensis Proteobacteria Unlikely neg
Massilia timonae Proteobacteria Non neg neg
Massilia varians Proteobacteria Unlikely neg
Massilibacillus massiliensis Firmicutes Rare +
Massilibacterium senegalense Firmicutes Rare neg neg neg neg neg neg neg neg neg
Massilicoli timonensis Firmicutes Rare neg + + neg neg + neg neg +
Massiliimalia massiliensis Firmicutes Rare neg neg
Massiliimalia timonensis Firmicutes Minor + d
Massilimicrobiota timonensis Firmicutes Moderate neg + + + neg neg neg neg +
Massilioclostridium coli Firmicutes Moderate neg
Massiliprevotella massiliensis Bacteroidetes Rare neg
Massilistercora timonensis Firmicutes Rare neg d d d + d d d
Mediterranea massiliensis Bacteroidetes Rare neg
Mediterraneibacter faecis Firmicutes Minor + neg neg +
Mediterraneibacter glycyrrhizinilyticus Firmicutes Minor + neg neg neg
Mediterraneibacter massiliensis Firmicutes Rare + neg + neg neg + + neg +
Megalodesulfovibrio gigas Proteobacteria Unlikely neg
Megamonas funiformis Firmicutes Minor neg neg d neg neg + +
Megamonas hypermegale Firmicutes Moderate neg neg d d d + +
Megamonas rupellensis Firmicutes Rare neg + + +
Megasphaera cerevisiae Firmicutes Rare neg neg
Megasphaera elsdenii Firmicutes Moderate neg neg + d
Megasphaera indica Firmicutes Rare neg
Megasphaera massiliensis Firmicutes Rare neg w + +
Megasphaera micronuciformis Firmicutes Minor neg neg neg neg neg
Megasphaera stantonii Firmicutes Rare neg
Meiothermus silvanus Deinococcus-Thermus Unlikely neg
Merdibacter massiliensis Firmicutes Rare neg
Merdimonas faecis Firmicutes Rare +
Mesobacillus jeotgali Firmicutes Rare vr neg neg neg neg neg neg neg neg
Mesobacillus subterraneus Firmicutes Rare neg neg neg neg neg
Mesorhizobium australicum Proteobacteria Unlikely neg
Mesorhizobium jarvisii Proteobacteria Unlikely neg + neg neg + neg + w neg
Mesorhizobium loti Proteobacteria Rare neg
Mesorhizobium muleiense Proteobacteria Unlikely neg
Mesosutterella multiformis Proteobacteria Rare neg
Metabacillus galliciensis Firmicutes Unlikely + neg neg neg
Metabacillus idriensis Firmicutes Rare + + + + +
Metabacillus litoralis Firmicutes Rare vr neg neg + neg
Metabacillus niabensis Firmicutes Rare + +
Metakosakonia massiliensis Proteobacteria Rare neg + +
Metamycoplasma anseris Tenericutes Unlikely unk
Metaprevotella massiliensis Bacteroidetes Rare neg
Methanobrevibacter arboriphilus Euryarchaeota Rare +
Methanobrevibacter millerae Euryarchaeota Rare +
Methanobrevibacter oralis Euryarchaeota Rare +
Methanobrevibacter ruminantium Euryarchaeota Rare +
Methanobrevibacter smithii Euryarchaeota Moderate +
Methanococcus voltae Euryarchaeota Rare neg
Methanomassiliicoccus intestinalis Euryarchaeota Rare +
Methanomassiliicoccus luminyensis Candidatus Thermoplasmatota Rare +
Methanomethylophilus alvus Candidatus Thermoplasmatota Rare
Methanosphaera stadtmanae Euryarchaeota Minor +
Methylibium petroleiphilum Proteobacteria Unlikely neg
Methylobacterium adhaesivum Proteobacteria Unlikely neg
Methylobacterium brachiatum Proteobacteria Unlikely neg
Methylobacterium jeotgali Proteobacteria Non neg neg neg neg + neg neg neg neg
Methylobacterium mesophilicum Proteobacteria Non neg neg neg neg + neg neg neg neg
Methylobacterium organophilum Proteobacteria Unlikely neg
Methylobacterium oryzae Proteobacteria Unlikely neg
Methylobacterium phyllosphaerae Proteobacteria Unlikely neg
Methylobacterium radiotolerans Proteobacteria Non neg neg neg neg + neg neg neg neg
Methylomusa anaerophila Firmicutes Unlikely neg neg neg neg
Methylorubrum aminovorans Proteobacteria Rare neg neg neg neg + neg neg neg neg
Methylorubrum extorquens Proteobacteria Non neg neg neg neg + neg neg neg neg
Methylorubrum populi Proteobacteria Unlikely neg
Methylorubrum thiocyanatum Proteobacteria Unlikely neg neg neg neg + neg neg neg neg
Methylorubrum zatmanii Proteobacteria Unlikely neg neg neg neg + neg neg neg neg
Methyloversatilis discipulorum Proteobacteria Rare neg
Methyloversatilis universalis Proteobacteria Rare neg
Microbacterium aurum Actinobacteria Rare + neg neg neg neg w neg neg
Microbacterium chocolatum Actinobacteria Unlikely + neg
Microbacterium deminutum Actinobacteria Unlikely +
Microbacterium esteraromaticum Actinobacteria Unlikely +
Microbacterium foliorum Actinobacteria Unlikely + neg neg neg + neg + d neg
Microbacterium ginsengisoli Actinobacteria Non + neg neg + neg + neg neg
Microbacterium gubbeenense Actinobacteria Unlikely +
Microbacterium hydrocarbonoxydans Actinobacteria Unlikely + neg neg neg
Microbacterium kitamiense Actinobacteria Unlikely + neg + neg + neg
Microbacterium lacticum Actinobacteria Unlikely + neg neg neg neg neg vr neg neg
Microbacterium liquefaciens Actinobacteria Unlikely +
Microbacterium luteolum Actinobacteria Non + neg
Microbacterium maritypicum Actinobacteria Unlikely +
Microbacterium mitrae Actinobacteria Unlikely +
Microbacterium natoriense Actinobacteria Unlikely + neg neg neg + neg neg neg neg
Microbacterium oleivorans Actinobacteria Unlikely + neg neg neg
Microbacterium oxydans Actinobacteria Unlikely + + neg + d
Microbacterium paraoxydans Actinobacteria Rare + +
Microbacterium phyllosphaerae Actinobacteria Unlikely + neg neg neg d neg d
Microbacterium saccharophilum Actinobacteria Unlikely + +
Microbacterium schleiferi Actinobacteria Unlikely + neg
Microbacterium sediminicola Actinobacteria Unlikely +
Microbacterium testaceum Actinobacteria Non + neg
Microbispora rosea Actinobacteria Rare +
Micrococcus cohnii Actinobacteria Unlikely + neg neg
Micrococcus endophyticus Actinobacteria Unlikely + neg neg neg neg neg neg + neg
Micrococcus luteus Actinobacteria Minor + neg neg neg + neg neg neg neg
Micrococcus lylae Actinobacteria Rare + + + neg + neg + + neg
Micrococcus terreus Actinobacteria Rare +
Microlunatus phosphovorus Actinobacteria Unlikely +
Micromonospora aurantiaca Actinobacteria Rare + neg
Micropruina glycogenica Actinobacteria Rare +
Microvirga aerophila Proteobacteria Unlikely neg
Microvirga massiliensis Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Microvirgula aerodenitrificans Proteobacteria Unlikely neg
Millionella massiliensis Bacteroidetes Rare neg
Miniphocaeibacter massiliensis Firmicutes Rare +
Mitsuokella jalaludinii Firmicutes Minor neg neg neg neg + + neg + neg
Mitsuokella multacida Firmicutes Moderate neg neg neg vr neg + vr vr neg
Mixta calida Proteobacteria Rare neg neg neg neg + + + + neg
Mixta intestinalis Proteobacteria Rare neg
Mobilibacterium massiliense Firmicutes Rare neg
Mobilibacterium timonense Firmicutes Rare neg
Mobilicoccus massiliensis Actinobacteria Rare +
Mobiluncus curtisii Actinobacteria Rare vr neg neg neg neg neg
Moellerella wisconsensis Proteobacteria Rare neg + neg neg w neg w neg
Mogibacterium diversum Firmicutes Rare +
Mogibacterium neglectum Firmicutes Rare +
Mogibacterium pumilum Firmicutes Rare +
Mogibacterium timidum Firmicutes Rare + neg neg neg neg neg neg neg
Mogibacterium vescum Firmicutes Unlikely +
Monoglobus pectinilyticus Firmicutes Minor +
Moorella glycerini Firmicutes Unlikely +
Moraxella catarrhalis Proteobacteria Unlikely neg neg neg
Moraxella osloensis Proteobacteria Unlikely neg
Mordavella massiliensis Firmicutes Rare neg
Morganella morganii Proteobacteria Minor neg neg neg neg d neg neg neg
Moryella indoligenes Firmicutes Rare + neg neg neg neg
Mucispirillum schaedleri Deferribacteres Rare neg
Murdochiella asaccharolytica Firmicutes Rare +
Murdochiella massiliensis Firmicutes Rare + + +
Murdochiella vaginalis Firmicutes Rare + neg neg neg neg neg neg neg neg
Muribaculum gordoncarteri Bacteroidetes Unlikely neg +
Muribaculum intestinale Bacteroidetes Minor neg neg neg neg
Murimonas intestini Firmicutes Rare +
Mycobacterium abscessus Actinobacteria Unlikely vr neg neg neg neg
Mycobacterium avium Actinobacteria Unlikely vr neg
Mycobacterium avium subsp. paratuberculosis Actinobacteria Unlikely vr
Mycobacterium colombiense Actinobacteria Rare vr
Mycobacterium florentinum Actinobacteria Rare vr
Mycobacterium fortuitum Actinobacteria Rare vr neg neg neg
Mycobacterium gastri Actinobacteria Rare vr
Mycobacterium gordonae Actinobacteria Rare vr neg neg neg neg neg
Mycobacterium interjectum Actinobacteria Rare vr
Mycobacterium kansasii Actinobacteria Unlikely vr
Mycobacterium lentiflavum Actinobacteria Rare vr
Mycobacterium simiae Actinobacteria Rare vr
Mycobacterium terrae Actinobacteria Rare vr
Mycobacterium tuberculosis Actinobacteria Non vr
Mycobacterium tuberculosis variant africanum Actinobacteria Non vr
Mycobacterium tuberculosis variant bovis Actinobacteria Unlikely +
Mycobacteroides abscessus subsp. bolletii Actinobacteria Unlikely +
Mycolicibacterium aubagnense Actinobacteria Non + neg
Mycolicibacterium cosmeticum Actinobacteria Unlikely vr
Mycolicibacterium houstonense Actinobacteria Rare + neg neg neg neg + + +
Mycolicibacterium mageritense Actinobacteria Unlikely + + +
Mycolicibacterium neoaurum Actinobacteria Rare +
Mycoplasma hominis Tenericutes Rare neg neg neg
Mycoplasma muris Tenericutes Rare neg
Mycoplasma pneumoniae Tenericutes Rare neg
Mycoplasmopsis arginini Tenericutes Unlikely neg
Mycoplasmopsis californica Tenericutes Unlikely neg
Myroides odoratimimus Bacteroidetes Unlikely neg
Myroides odoratus Bacteroidetes Unlikely neg
Nakamurella multipartita Actinobacteria Unlikely +
Nanosynbacter lyticus Candidatus Saccharibacteria Unlikely +
Natronorubrum bangense Euryarchaeota Non neg
Nautilia nitratireducens Proteobacteria Unlikely neg
Ndongobacter massiliensis Firmicutes Unlikely neg
Necropsobacter rosorum Proteobacteria Rare neg neg + neg w neg neg neg neg
Negativibacillus massiliensis Firmicutes Minor neg + + +
Negativicoccus massiliensis Firmicutes Rare neg
Negativicoccus succinicivorans Firmicutes Rare neg
Neglecta timonensis Firmicutes Rare +
Neisseria bacilliformis Proteobacteria Rare neg
Neisseria canis Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria cinerea Proteobacteria Minor neg neg neg neg neg neg neg neg neg
Neisseria elongata Proteobacteria Minor neg neg neg neg neg neg neg neg neg
Neisseria flava Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria flavescens Proteobacteria Minor neg neg neg neg neg neg neg neg neg
Neisseria gonorrhoeae Proteobacteria Non neg neg neg neg neg neg neg neg neg
Neisseria lactamica Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria macacae Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria meningitidis Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Neisseria mucosa Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria oralis Proteobacteria Rare neg neg neg neg neg
Neisseria perflava Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria polysaccharea Proteobacteria Rare neg neg
Neisseria shayeganii Proteobacteria Rare neg neg neg neg neg neg
Neisseria sicca Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria subflava Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neoactinobaculum massilliense Actinobacteria Rare + neg neg neg neg neg neg neg neg
Neobacillus bataviensis Firmicutes Rare + neg neg neg w neg + neg neg
Neobacillus fumarioli Firmicutes Unlikely + neg neg neg d neg + neg neg
Neobacillus jeddahensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Neobacillus massiliamazoniensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Neobacillus niacini Firmicutes Rare + neg d(+) neg neg d(+) neg d(+) d(+)
Neobacillus pocheonensis Firmicutes Unlikely + neg neg neg
Neobacillus soli Firmicutes Rare + neg neg neg neg neg neg neg
Neobittarella massiliensis Firmicutes Moderate +
Neofamilia massiliensis Firmicutes Rare
Nesterenkonia massiliensis Actinobacteria Rare + +
Nevskia ramosa Proteobacteria Unlikely neg
Niallia nealsonii Firmicutes Rare + neg neg neg + + + + neg
Niameybacter massiliensis Firmicutes Rare +
Nigerium massiliense Actinobacteria Rare +
Nitriliruptor alkaliphilus Actinobacteria Unlikely +
Nitrosomonas eutropha Proteobacteria Rare neg
Nocardia asteroides Actinobacteria Rare +
Nocardia brevicatena Actinobacteria Rare +
Nocardia cyriacigeorgica Actinobacteria Rare +
Nocardia mangyaensis Actinobacteria Unlikely +
Nocardia otitidiscaviarum Actinobacteria Rare +
Nocardioides jensenii Actinobacteria Unlikely +
Nocardioides kribbensis Actinobacteria Unlikely +
Nocardioides massiliensis Actinobacteria Unlikely + neg neg neg neg neg neg neg neg
Nosocomiicoccus massiliensis Firmicutes Rare + neg
Noviherbaspirillum massiliense Proteobacteria Rare neg
Novosphingobium capsulatum Proteobacteria Unlikely neg neg neg + neg neg neg
Numidum massiliense Firmicutes Rare + +
Obesumbacterium proteus Proteobacteria Rare neg
Oceanidesulfovibrio marinus Proteobacteria Unlikely neg
Oceanithermus profundus Deinococcus-Thermus Unlikely neg
Oceanobacillus caeni Firmicutes Rare + + + + + w +
Oceanobacillus iheyensis Firmicutes Unlikely + +
Oceanobacillus jeddahense Firmicutes Rare + +
Oceanobacillus manasiensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Oceanobacillus massiliensis Firmicutes Rare + neg neg neg w neg + neg neg
Oceanobacillus oncorhynchi Firmicutes Non + neg neg
Oceanobacillus picturae Firmicutes Unlikely + w neg w
Oceanobacillus senegalensis Firmicutes Unlikely +
Oceanobacillus sojae Firmicutes Rare + neg neg neg neg neg + + neg
Oceanobacillus timonensis Firmicutes Unlikely +
Ochrobactrum anthropi Proteobacteria Unlikely neg
Ochrobactrum intermedium Proteobacteria Unlikely neg neg
Odoribacter laneus Bacteroidetes Minor neg neg neg neg
Odoribacter massiliensis Bacteroidetes Minor
Odoribacter splanchnicus Bacteroidetes Widespread neg
Oenococcus oeni Firmicutes Unlikely + neg neg neg
Oerskovia turbata Actinobacteria Rare + neg + neg neg d(neg)
Okadaella gastrococcus Firmicutes Rare neg
Olegusella massiliensis Actinobacteria Rare + neg
Oleidesulfovibrio alaskensis Proteobacteria Rare neg
Oleidesulfovibrio vietnamensis Proteobacteria Rare neg
Oligella urethralis Proteobacteria Rare neg neg
Olsenella congonensis Actinobacteria Rare +
Olsenella massiliensis Actinobacteria Rare +
Olsenella phocaeensis Actinobacteria Rare +
Olsenella profusa Actinobacteria Rare + + + +
Olsenella timonensis Actinobacteria Rare +
Olsenella uli Actinobacteria Rare + neg neg neg neg
Olsenella urininfantis Actinobacteria Rare +
Oribacterium asaccharolyticum Firmicutes Rare vr
Oribacterium parvum Firmicutes Rare vr neg neg neg
Oribacterium sinus Firmicutes Minor vr neg neg neg
Ornithinibacillus contaminans Firmicutes Unlikely + w
Ornithinibacillus massiliensis Firmicutes Rare +
Ornithobacterium rhinotracheale Bacteroidetes Rare neg neg neg
Oscillibacter massiliensis Firmicutes Rare neg
Oscillibacter ruminantium Firmicutes Rare neg neg neg neg
Oscillibacter valericigenes Firmicutes Minor neg neg neg neg
Oscillospira guillermondii Firmicutes Rare +
Ottowia massiliensis Pseudomonadota Rare neg
Oxalobacter formigenes Proteobacteria Moderate neg
Pacaella massiliensis Synergistetes Rare neg
Paenarthrobacter aurescens Actinobacteria Rare +
Paenarthrobacter ilicis Actinobacteria Non + w
Paenibacillus alvei Firmicutes Unlikely + d neg neg + neg neg neg neg
Paenibacillus amylolyticus Firmicutes Rare + + + neg
Paenibacillus anaericanus Firmicutes Rare neg neg neg neg + neg neg neg neg
Paenibacillus antibioticophila Firmicutes Rare + neg neg neg neg + neg neg
Paenibacillus azoreducens Firmicutes Rare vr neg + + neg
Paenibacillus barcinonensis Firmicutes Unlikely + neg neg neg + neg + neg neg
Paenibacillus barengoltzii Firmicutes Unlikely + neg neg neg neg neg neg neg
Paenibacillus borealis Firmicutes Unlikely neg neg neg neg + neg + d d
Paenibacillus bouchesdurhonensis Firmicutes Rare neg neg
Paenibacillus chibensis Firmicutes Unlikely + neg neg + + neg
Paenibacillus chitinolyticus Firmicutes Rare vr neg
Paenibacillus cineris Firmicutes Rare vr neg neg neg neg + + d(w) neg
Paenibacillus cookii Firmicutes Unlikely vr neg neg neg w neg neg neg neg
Paenibacillus daejeonensis Firmicutes Rare vr neg +
Paenibacillus dendritiformis Firmicutes Rare neg neg
Paenibacillus donghaensis Firmicutes Unlikely + neg neg neg neg neg + neg neg
Paenibacillus durus Firmicutes Rare + neg neg neg neg +
Paenibacillus faecis Firmicutes Rare + w +
Paenibacillus favisporus Firmicutes Rare vr +
Paenibacillus glucanolyticus Firmicutes Rare neg neg neg d(+) d(+) neg
Paenibacillus graminis Firmicutes Unlikely + neg neg neg + + neg
Paenibacillus ihuae Firmicutes Rare +
Paenibacillus ihumii Firmicutes Rare neg neg neg neg neg neg +
Paenibacillus illinoisensis Firmicutes Rare + neg + + + neg
Paenibacillus jamilae Firmicutes Rare vr neg neg neg + neg + neg neg
Paenibacillus kribbensis Firmicutes Rare vr neg neg neg w + + neg neg
Paenibacillus lactis Firmicutes Rare neg neg neg neg neg neg + neg neg
Paenibacillus larvae Firmicutes Rare + neg neg neg + neg neg neg neg
Paenibacillus lautus Firmicutes Rare vr neg neg neg + neg + neg neg
Paenibacillus macerans Firmicutes Rare + neg neg neg + d d d neg
Paenibacillus motobuensis Firmicutes Rare neg
Paenibacillus mucilaginosus Firmicutes Unlikely neg
Paenibacillus naphthalenovorans Firmicutes Unlikely + neg neg neg neg neg + neg d
Paenibacillus odorifer Firmicutes Unlikely + d neg
Paenibacillus pabuli Firmicutes Rare + +
Paenibacillus pasadenensis Firmicutes Rare +
Paenibacillus phocaensis Firmicutes Rare neg neg neg neg neg neg + +
Paenibacillus polymyxa Firmicutes Rare neg neg neg neg + neg + neg
Paenibacillus provencensis Firmicutes Rare neg neg neg neg neg neg + neg neg
Paenibacillus pueri Firmicutes Rare + neg neg neg + + + + neg
Paenibacillus rhizosphaerae Firmicutes Unlikely + +
Paenibacillus riograndensis Firmicutes Unlikely vr neg + neg +
Paenibacillus rubinfantis Firmicutes Rare neg neg
Paenibacillus sabinae Firmicutes Rare + neg neg
Paenibacillus senegalensis Firmicutes Rare neg +
Paenibacillus senegalimassiliensis Firmicutes Rare vr neg
Paenibacillus stellifer Firmicutes Unlikely +
Paenibacillus thiaminolyticus Firmicutes Unlikely + d(+) d
Paenibacillus timonensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Paenibacillus tuaregi Firmicutes Rare vr neg
Paenibacillus typhae Firmicutes Rare + neg neg neg + neg + neg +
Paenibacillus urinalis Firmicutes Rare neg neg neg neg neg neg + neg neg
Paenibacillus xylanilyticus Firmicutes Rare + neg +
Paeniclostridium ghonii Firmicutes Rare +
Paeniclostridium sordellii Firmicutes Minor + neg neg neg
Paenisporosarcina quisquiliarum Firmicutes Unlikely + neg
Paludibacter jiangxiensis Bacteroidetes Rare neg
Paludibacter propionicigenes Bacteroidetes Unlikely neg
Paludibaculum fermentans Acidobacteria Unlikely neg
Paludicola psychrotolerans Firmicutes Rare +
Pannonibacter phragmitetus Proteobacteria Unlikely neg
Pantoea agglomerans Proteobacteria Minor neg neg neg d vr + neg
Pantoea conspicua Proteobacteria Rare neg + neg + +
Pantoea eucalypti Proteobacteria Rare neg + +
Pantoea rodasii Proteobacteria Unlikely neg + neg + + +
Pantoea septica Proteobacteria Rare neg neg d d +
Pantoea vagans Proteobacteria Rare neg + +
Papillibacter cinnamivorans Firmicutes Rare +
Parabacteroides bouchesdurhonensis Bacteroidetes Minor neg + + + + + + + +
Parabacteroides chinchillae Bacteroidetes Minor neg neg neg
Parabacteroides distasonis Bacteroidetes Widespread neg neg neg neg neg neg neg
Parabacteroides faecis Bacteroidetes Rare neg neg neg neg
Parabacteroides goldsteinii Bacteroidetes Moderate neg
Parabacteroides gordonii Bacteroidetes Minor neg neg neg neg
Parabacteroides johnsonii Bacteroidetes Moderate neg neg neg neg
Parabacteroides massiliensis Bacteroidetes Rare neg neg neg neg neg neg w neg neg
Parabacteroides merdae Bacteroidetes Widespread neg neg neg neg neg neg
Parabacteroides pacaensis Bacteroidetes Rare neg neg neg neg neg neg + neg neg
Parabacteroides pekinense Bacteroidetes Rare neg neg neg neg
Parabacteroides provencensis Bacteroidetes Rare neg neg + neg neg neg neg neg neg
Parabacteroides timonensis Bacteroidetes Minor neg
Paraburkholderia fungorum Proteobacteria Rare neg
Paraburkholderia phytofirmans Proteobacteria Unlikely neg neg
Paracholeplasma brassicae Tenericutes Unlikely neg
Paraclostridium benzoelyticum Firmicutes Rare +
Paraclostridium bifermentans Firmicutes Moderate +
Paracoccus aminovorans Proteobacteria Rare neg + neg + +
Paracoccus carotinifaciens Proteobacteria Unlikely neg + neg + +
Paracoccus denitrificans Proteobacteria Rare neg
Paracoccus haeundaensis Proteobacteria Unlikely neg
Paracoccus marcusii Proteobacteria Non neg
Paracoccus marinus Proteobacteria Unlikely neg
Paracoccus sphaerophysae Proteobacteria Unlikely neg
Paracoccus yeei Proteobacteria Rare neg neg
Paraeggerthella hongkongensis Actinobacteria Rare +
Parafannyhessea umbonata Actinobacteria Unlikely + neg neg neg
Paraliobacillus quinghaiensis Firmicutes Non + neg neg
Paramuribaculum intestinale Bacteroidetes Rare neg
Paraprevotella clara Bacteroidetes Moderate neg neg neg neg
Paraprevotella xylaniphila Bacteroidetes Moderate neg neg neg
Pararheinheimera texasensis Proteobacteria Rare neg
Parascardovia denticolens Actinobacteria Rare + neg neg
Parasphingorhabdus flavimaris Proteobacteria Unlikely neg neg neg neg neg
Parasporobacterium paucivorans Firmicutes Rare neg
Parasutterella excrementihominis Proteobacteria Moderate neg
Parasutterella secunda Proteobacteria Rare neg
Paratractidigestivibacter faecalis Actinobacteria Rare + neg neg neg
Paremcibacter congregatus Proteobacteria Unlikely neg neg neg neg w + neg neg neg
Parolsenella catena Actinobacteria Rare + neg neg neg
Parolsenella massiliensis Actinobacteria Rare + neg neg neg
Parvibacter caecicola Actinobacteria Rare +
Parvimonas micra Firmicutes Moderate + neg neg
Pasteurella aerogenes Proteobacteria Rare neg neg neg neg + + d neg neg
Pasteurella dagmatis Proteobacteria Rare neg neg neg neg neg neg
Pasteurella multocida Proteobacteria Rare neg neg neg neg d neg + + neg
Paucilactobacillus oligofermentans Firmicutes Non + neg neg neg neg neg neg neg neg
Paucilactobacillus suebicus Firmicutes Unlikely + neg neg
Paucilactobacillus vaccinostercus Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Paucisalibacillus globulus Firmicutes Unlikely + neg neg neg neg neg + neg neg
Pauljensenia bouchesdurhonensis Actinobacteria Minor +
Pauljensenia cellulosilytica Actinobacteria Rare +
Pauljensenia hongkongensis Actinobacteria Rare +
Pauljensenia keddieii Actinobacteria Minor +
Pauljensenia odontolyticus Actinobacteria Rare +
Pauljensenia turicensis Actinobacteria Rare +
Pectobacterium wasabiae Proteobacteria Unlikely neg neg neg + neg
Pediococcus acidilactici Firmicutes Rare + neg neg neg neg neg neg neg neg
Pediococcus claussenii Firmicutes Rare
Pediococcus damnosus Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Pediococcus pentosaceus Firmicutes Minor + neg neg neg neg neg neg neg neg
Pedobacter cryoconitis Proteobacteria Non neg
Pedobacter daejeonensis Proteobacteria Unlikely neg
Pedobacter panaciterrae Bacteroidetes Unlikely neg neg neg neg
Pedobacter terricola Bacteroidetes Non neg
Pedomicrobium ferrugineum Proteobacteria Rare neg
Pelistega indica Proteobacteria Rare neg
Pelobacter propionicus Proteobacteria Rare neg
Pelomonas aquatica Proteobacteria Rare neg
Pelomonas puraquae Proteobacteria Rare neg
Pelomonas saccharophila Proteobacteria Rare neg
Peptacetobacter hiranonis Firmicutes Minor + neg neg neg neg neg neg neg
Peptoclostridium acidaminophilum Firmicutes Unlikely +
Peptococcus niger Firmicutes Rare +
Peptoniphilus asaccharolyticus Firmicutes Minor + neg neg
Peptoniphilus catoniae Firmicutes Rare +
Peptoniphilus colimassiliensis Firmicutes Rare + neg neg w + neg + neg w
Peptoniphilus duerdenii Firmicutes Rare +
Peptoniphilus gorbachii Firmicutes Rare +
Peptoniphilus grossensis Firmicutes Rare +
Peptoniphilus harei Firmicutes Minor + neg neg
Peptoniphilus indolicus Firmicutes Rare + neg
Peptoniphilus ivorii Firmicutes Rare + neg neg
Peptoniphilus koenoeneniae Firmicutes Rare + neg
Peptoniphilus lacrimalis Firmicutes Minor + neg neg
Peptoniphilus obesi Firmicutes Rare +
Peptoniphilus pacaensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Peptoniphilus phoceensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Peptoniphilus senegalensis Firmicutes Rare +
Peptoniphilus timonensis Firmicutes Rare +
Peptostreptococcus anaerobius Firmicutes Moderate + vr neg
Peptostreptococcus russellii Firmicutes Rare +
Peptostreptococcus stomatis Firmicutes Minor + neg neg
Peribacillus psychrosaccharolyticus Firmicutes Unlikely vr neg neg neg + neg d d
Peribacillus simplex Firmicutes Rare vr neg neg neg neg neg d(+) w neg
Petrimonas mucosa Bacteroidetes Unlikely neg
Petrimonas sulfuriphila Bacteroidetes Rare neg + +
Petrobacter succinatimandens Proteobacteria Rare neg
Petrocella atlantisensis Firmicutes Unlikely +
Phascolarctobacterium faecium Firmicutes Minor neg
Phascolarctobacterium succinatutens Firmicutes Moderate neg neg neg neg
Phenylobacterium falsum Proteobacteria Unlikely neg
Phenylobacterium haematophilum Proteobacteria Rare neg
Phenylobacterium lituiforme Proteobacteria Unlikely neg
Phocaeicola barnesiae Bacteroidetes Moderate neg neg neg neg
Phocaeicola coprocola Bacteroidetes Widespread neg neg neg neg
Phocaeicola coprophilus Bacteroidetes Widespread neg
Phocaeicola dorei Bacteroidetes Widespread neg neg neg neg
Phocaeicola massiliensis Bacteroidetes Minor neg neg neg neg neg neg vr neg
Phocaeicola paurosaccharolyticus Bacteroidetes Rare neg
Phocaeicola plebeius Bacteroidetes Widespread neg neg neg neg
Phocaeicola salanitronis Bacteroidetes Minor neg neg neg neg
Phocaeicola sartorii Bacteroidetes Moderate neg neg neg neg
Phocaeicola vulgatus Bacteroidetes Widespread neg neg neg neg neg neg
Phocea massiliensis Firmicutes Minor neg
Phoenicibacter congonensis Actinobacteria Rare + + + + + + +
Phyllobacterium myrsinacearum Proteobacteria Rare neg
Pigmentiphaga kullae Proteobacteria Rare neg neg neg neg neg
Planococcus massiliensis Firmicutes Unlikely + neg
Planococcus rifietoensis Firmicutes Unlikely +
Planomicrobium chinense Firmicutes Unlikely + neg
Planomicrobium koreense Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Planomicrobium okeanokoites Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Plesiomonas shigelloides Proteobacteria Rare neg neg + neg neg
Pluralibacter gergoviae Proteobacteria Rare neg neg neg neg + neg + neg
Pontibacillus litoralis Firmicutes Rare + neg neg neg neg neg neg
Porphyromonas asaccharolytica Bacteroidetes Minor neg neg neg neg
Porphyromonas bennonis Bacteroidetes Rare neg
Porphyromonas cangingivalis Bacteroidetes Unlikely neg neg neg neg
Porphyromonas canoris Bacteroidetes Rare neg neg neg neg
Porphyromonas crevioricanis Bacteroidetes Unlikely neg neg neg neg
Porphyromonas endodontalis Bacteroidetes Minor neg
Porphyromonas gingivalis Bacteroidetes Unlikely neg neg neg neg
Porphyromonas levii Bacteroidetes Rare neg neg neg
Porphyromonas macacae Bacteroidetes Rare neg neg neg neg +
Porphyromonas somerae Bacteroidetes Minor neg neg neg neg
Porphyromonas uenonis Bacteroidetes Minor neg
Pragia fontium Proteobacteria Rare neg neg neg neg w w neg neg
Prevotella albensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Prevotella amnii Bacteroidetes Rare neg neg
Prevotella aurantiaca Bacteroidetes Rare neg neg neg neg
Prevotella baroniae Bacteroidetes Rare neg neg neg
Prevotella bergensis Bacteroidetes Moderate neg d
Prevotella bivia Bacteroidetes Moderate neg neg neg neg neg
Prevotella brevis Bacteroidetes Minor neg neg neg neg neg neg neg neg
Prevotella bryantii Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Prevotella buccae Bacteroidetes Minor neg neg neg neg neg
Prevotella buccalis Bacteroidetes Minor neg neg neg neg
Prevotella conceptionensis Bacteroidetes Rare neg
Prevotella copri Bacteroidetes Widespread neg
Prevotella corporis Bacteroidetes Moderate neg neg neg neg neg
Prevotella dentalis Bacteroidetes Minor neg neg neg
Prevotella dentasini Bacteroidetes Rare neg + neg neg
Prevotella denticola Bacteroidetes Minor neg neg neg neg neg
Prevotella disiens Bacteroidetes Minor neg neg neg neg neg
Prevotella enoeca Bacteroidetes Rare neg neg neg neg
Prevotella falsenii Bacteroidetes Rare
Prevotella fusca Bacteroidetes Unlikely neg neg neg
Prevotella herbatica Bacteroidetes Unlikely neg
Prevotella histicola Bacteroidetes Rare neg neg neg
Prevotella ihumii Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Prevotella intermedia Bacteroidetes Minor neg neg vr neg neg vr
Prevotella jejuni Bacteroidetes Rare neg neg neg
Prevotella lascolaii Bacteroidetes Minor neg neg
Prevotella loescheii Bacteroidetes Rare neg neg neg neg
Prevotella maculosa Bacteroidetes Rare neg neg neg
Prevotella marseillensis Bacteroidetes Rare neg + + + + + + + +
Prevotella marshii Bacteroidetes Rare neg neg neg
Prevotella melaninogenica Bacteroidetes Moderate neg neg neg neg neg neg
Prevotella merdae Bacteroidetes Rare neg
Prevotella micans Bacteroidetes Rare neg neg
Prevotella multiformis Bacteroidetes Rare neg + neg neg
Prevotella multisaccharivorax Bacteroidetes Minor neg + + +
Prevotella nanceiensis Bacteroidetes Rare neg neg neg neg
Prevotella nigrescens Bacteroidetes Minor neg neg neg neg neg
Prevotella oralis Bacteroidetes Minor neg neg neg neg neg
Prevotella oris Bacteroidetes Moderate neg neg neg neg neg
Prevotella oryzae Bacteroidetes Unlikely neg
Prevotella oulorum Bacteroidetes Rare neg neg neg neg
Prevotella pallens Bacteroidetes Rare neg
Prevotella paludivivens Bacteroidetes Rare neg
Prevotella phocaeensis Bacteroidetes Rare neg + neg neg neg neg neg neg neg
Prevotella pleuritidis Bacteroidetes Rare neg neg neg neg
Prevotella rara Bacteroidetes Rare neg neg neg neg
Prevotella rectalis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Prevotella ruminicola Bacteroidetes Minor neg neg neg neg
Prevotella saccharolytica Bacteroidetes Rare neg neg neg
Prevotella salivae Bacteroidetes Rare neg neg neg neg
Prevotella scopos Bacteroidetes Unlikely neg neg neg
Prevotella seregens Bacteroidetes Rare
Prevotella shahii Bacteroidetes Rare neg neg neg neg
Prevotella stercorea Bacteroidetes Moderate neg
Prevotella timonensis Bacteroidetes Minor neg neg neg neg
Prevotella veroralis Bacteroidetes Minor neg neg neg neg neg neg
Prevotellamassilia timonensis Bacteroidetes Minor neg
Priestia flexa Firmicutes Rare vr neg neg neg + d(+) + neg
Priestia koreensis Firmicutes Unlikely + neg + neg
Priestia megaterium Firmicutes Rare + neg neg neg + + + d d
Prochlorococcus marinus Cyanobacteria Rare neg
Prolixibacter bellariivorans Bacteroidetes Unlikely neg
Propionibacterium acidifaciens Actinobacteria Rare + +
Propionibacterium freudenreichii Actinobacteria Rare + + + neg neg
Propionimicrobium lymphophilum Actinobacteria Rare neg + neg + neg + neg neg
Prosthecobacter fluviatilis Verrucomicrobia Rare neg
Proteiniphilum saccharofermentans Bacteroidetes Unlikely neg
Proteus mirabilis Proteobacteria Moderate neg neg neg + neg neg neg
Proteus penneri Proteobacteria Rare neg neg neg neg w neg neg neg
Proteus vulgaris Proteobacteria Rare neg neg neg + neg neg neg
Provencibacterium massiliense Firmicutes Moderate neg
Providencia alcalifaciens Proteobacteria Minor neg + neg neg neg neg
Providencia heimbachae Proteobacteria Rare neg + neg neg w vr neg neg
Providencia rettgeri Proteobacteria Minor neg + neg d(+) + + + neg
Providencia rustigianii Proteobacteria Rare neg neg neg neg w neg neg neg
Providencia stuartii Proteobacteria Rare neg neg neg neg d + d neg
Pseudarthrobacter oxydans Actinobacteria Rare + +
Pseudarthrobacter polychromogenes Actinobacteria Unlikely vr +
Pseudescherichia vulneris Proteobacteria Rare neg neg neg neg neg neg + neg
Pseudobutyrivibrio ruminis Firmicutes Rare neg w neg
Pseudobutyrivibrio xylanivorans Firmicutes Unlikely neg
Pseudochrobactrum asaccharolyticum Proteobacteria Rare neg
Pseudochrobactrum saccharolyticum Proteobacteria Rare neg
Pseudocitrobacter anthropi Proteobacteria Rare neg neg neg neg neg neg neg
Pseudocitrobacter faecalis Proteobacteria Rare neg neg neg neg d neg
Pseudoclavibacter alba Actinobacteria Rare + neg neg neg
Pseudoclavibacter helvolus Actinobacteria Unlikely +
Pseudoclavibacter sp. Timone Actinobacteria Rare +
Pseudoclostridium thermosuccinogenes Firmicutes Unlikely neg
Pseudodesulfovibrio aespoeensis Proteobacteria Unlikely neg
Pseudodesulfovibrio indicus Proteobacteria Unlikely neg
Pseudoflavonifractor capillosus Firmicutes Moderate neg neg neg neg neg
Pseudoglutamicibacter albus Actinobacteria Rare +
Pseudoglutamicibacter cumminsii Actinobacteria Unlikely + neg
Pseudomonas aeruginosa Proteobacteria Rare neg neg neg neg neg
Pseudomonas alcaligenes Proteobacteria Non neg
Pseudomonas alcaliphila Proteobacteria Rare neg + neg + neg
Pseudomonas asiatica Proteobacteria Rare neg
Pseudomonas asplenii Proteobacteria Unlikely neg neg neg neg + neg + neg neg
Pseudomonas boreopolis Proteobacteria Non neg neg neg
Pseudomonas caricapapayae Proteobacteria Non neg
Pseudomonas chlororaphis Proteobacteria Non neg
Pseudomonas citronellolis Proteobacteria Rare neg neg + neg neg
Pseudomonas fluorescens Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Pseudomonas fragi Proteobacteria Rare neg
Pseudomonas fulva Proteobacteria Rare neg
Pseudomonas gessardii Proteobacteria Non neg +
Pseudomonas japonica Proteobacteria Non neg
Pseudomonas libanensis Proteobacteria Non neg
Pseudomonas lundensis Proteobacteria Non neg d(neg) neg neg neg
Pseudomonas luteola Proteobacteria Unlikely neg neg neg + + + neg
Pseudomonas massiliensis Proteobacteria Non neg + + +
Pseudomonas mendocina Proteobacteria Rare neg
Pseudomonas migulae Proteobacteria Non neg
Pseudomonas monteilii Proteobacteria Unlikely neg
Pseudomonas mosselii Proteobacteria Non neg
Pseudomonas nitroreducens Proteobacteria Unlikely neg
Pseudomonas oleovorans Proteobacteria Unlikely neg neg neg neg neg neg
Pseudomonas oryzihabitans Proteobacteria Unlikely neg neg + + +
Pseudomonas parafulva Proteobacteria Unlikely neg
Pseudomonas protegens Proteobacteria Unlikely neg neg + neg
Pseudomonas putida Biovar A Proteobacteria Rare neg neg neg neg neg
Pseudomonas putida Biovar B Proteobacteria Rare neg neg neg neg neg
Pseudomonas rhodesiae Proteobacteria Non neg
Pseudomonas saudiphocaensis Proteobacteria Rare neg
Pseudomonas straminea Proteobacteria Unlikely neg neg
Pseudomonas stutzeri Proteobacteria Unlikely neg neg neg neg neg
Pseudomonas taetrolens Proteobacteria Non neg
Pseudomonas tolaasii Proteobacteria Unlikely neg
Pseudomonas veronii Proteobacteria Rare neg
Pseudomonas weihenstephanensis Proteobacteria Unlikely neg
Pseudomonas xanthomarina Proteobacteria Non neg
Pseudomonas yamanorum Proteobacteria Unlikely neg + neg + + + neg + +
Pseudomonas zhaodongensis Proteobacteria Unlikely neg + + +
Pseudonocardia dioxanivorans Actinobacteria Unlikely + +
Pseudoprevotella muciniphila Bacteroidetes Rare neg
Pseudopropionibacterium massiliense Actinobacteria Rare + + neg + neg + neg + neg
Pseudoramibacter alactolyticus Firmicutes Rare + d(w) d(w)
Pseudoruegeria marinistellae Proteobacteria Rare neg
Pseudoruminococcus massiliensis Firmicutes Rare neg
Pseudoxanthomonas broegbernensis Proteobacteria Unlikely neg
Pseudoxanthomonas japonensis Proteobacteria Unlikely neg
Pseudoxanthomonas mexicana Proteobacteria Rare neg
Pseudoxanthomonas spadix Proteobacteria Rare neg neg neg neg
Pseudoxanthomonas suwonensis Proteobacteria Rare neg
Pseudoxanthomonas taiwanensis Proteobacteria Rare neg
Psychrobacter alimentarius Proteobacteria Unlikely + neg neg neg neg
Psychrobacter arenosus Proteobacteria Unlikely neg neg neg
Psychrobacter cibarius Proteobacteria Unlikely neg neg neg neg neg
Psychrobacter faecalis Proteobacteria Unlikely neg neg neg neg neg neg neg
Psychrobacter fulvigenes Proteobacteria Rare neg neg
Psychrobacter maritimus Proteobacteria Unlikely neg neg neg
Psychrobacter namhaensis Proteobacteria Unlikely neg neg neg neg neg
Psychrobacter phenylpyruvicus Proteobacteria Rare neg neg neg neg neg
Psychrobacter pulmonis Proteobacteria Unlikely neg neg neg neg
Pusillimonas faecalis Firmicutes Rare neg
Pygmaiobacter massiliensis Firmicutes Minor +
Pyramidobacter piscolens Synergistetes Minor neg
Rahnella aquatilis Proteobacteria Unlikely neg neg d(+) neg neg neg +
Ralstonia mannitolilytica Proteobacteria Rare neg neg neg + neg + neg
Ralstonia pickettii Biovar Va-1&2 Proteobacteria Rare neg neg neg + neg neg neg
Raoultella ornithinolytica Proteobacteria Minor neg + neg neg + + + + neg
Raoultella planticola Proteobacteria Rare neg d(+) d(neg) neg + + + +
Raoultella terrigena Proteobacteria Rare neg + neg + + + +
Raoultibacter massiliensis Actinobacteria Rare + neg neg neg + neg + + neg
Raoultibacter timonensis Actinobacteria Rare + neg neg neg + neg + + neg
Rheinheimera perlucida Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Rhizobium metallidurans Proteobacteria Unlikely neg
Rhizorhabdus wittichii Proteobacteria Unlikely neg neg neg + neg + +
Rhodanobacter ginsenosidimutans Proteobacteria Unlikely neg
Rhodococcus erythropolis Actinobacteria Rare + neg neg neg
Rhodococcus hoagii Actinobacteria Rare +
Rhodococcus jostii Actinobacteria Non + +
Rhodococcus opacus Actinobacteria Unlikely + + + +
Rhodococcus qingshengii Actinobacteria Unlikely +
Rhodococcus rhodochrous Actinobacteria Rare + neg neg neg
Rhodoplanes serenus Proteobacteria Unlikely neg
Rhodothermus marinus Bacteroidetes Non neg
Riemerella columbina Bacteroidetes Rare neg
Rikenella microfusus Bacteroidetes Rare neg neg neg neg neg neg
Risungbinella massiliensis Firmicutes Rare + neg
Robertmurraya andreesenii Firmicutes Unlikely +
Robertmurraya kyonggiensis Firmicutes Rare + neg neg neg w neg + neg neg
Robertmurraya massiliosenegalensis Firmicutes Rare + neg
Robinsoniella peoriensis Firmicutes Rare +
Romboutsia hominis Firmicutes Rare + neg neg neg + neg neg neg neg
Romboutsia ilealis Firmicutes Rare vr neg neg neg neg neg neg neg neg
Romboutsia lituseburensis Firmicutes Minor + neg neg neg neg neg neg neg neg
Romboutsia maritimum Firmicutes Rare +
Romboutsia timonensis Firmicutes Moderate +
Romboutsia weinsteinii Firmicutes Rare +
Roseburia faecis Firmicutes Widespread vr
Roseburia hominis Firmicutes Widespread vr
Roseburia intestinalis Firmicutes Widespread vr neg
Roseburia inulinivorans Firmicutes Widespread vr
Roseobacter denitrificans Proteobacteria Non neg
Roseomonas gilardii Proteobacteria Rare neg neg neg neg
Roseomonas mucosa Proteobacteria Rare neg
Rossellomorea aquimaris Firmicutes Unlikely vr neg neg neg neg neg neg neg neg
Rossellomorea marisflavi Firmicutes Rare vr neg neg neg + neg + neg neg
Rossellomorea vietnamensis Firmicutes Rare + neg neg neg + neg + neg neg
Rothia aeria Actinobacteria Minor + neg neg
Rothia dentocariosa Actinobacteria Minor + + neg neg neg
Rothia halotolerans Actinobacteria Unlikely + + neg neg w + + + neg
Rothia koreensis Actinobacteria Rare +
Rothia kristinae Actinobacteria Rare + neg neg + neg d(+)
Rothia mucilaginosa Actinobacteria Moderate + neg neg + neg neg neg
Rothia terrae Actinobacteria Rare + neg + neg
Rubeoparvulum massiliense Firmicutes Rare neg neg neg neg + neg neg neg neg
Rubinisphaera brasiliensis Planctomycetes Non neg
Rubneribacter badeniensis Actinobacteria Minor + neg neg neg
Rubrobacter xylanophilus Actinobacteria Non +
Rudanella lutea Bacteroidetes Unlikely neg
Ruminiclostridium cellobioparum Firmicutes Rare vr
Ruminiclostridium cellulolyticum Firmicutes Unlikely + neg neg neg neg neg neg neg
Ruminiclostridium herbifermentans Firmicutes Unlikely vr
Ruminiclostridium josui Firmicutes Rare +
Ruminococcus albus Firmicutes Moderate + neg neg
Ruminococcus bicirculans Firmicutes Moderate +
Ruminococcus bovis Firmicutes Unlikely + neg neg neg neg neg neg neg neg
Ruminococcus bromii Firmicutes Widespread + neg neg neg neg neg neg neg
Ruminococcus callidus Firmicutes Widespread + neg neg neg neg
Ruminococcus champanellensis Firmicutes Moderate + neg neg
Ruminococcus flavefaciens Firmicutes Moderate + neg neg
Ruminococcus gauvreauii Firmicutes Minor + neg neg neg + + +
Ruminococcus gnavus Firmicutes Widespread + neg neg
Ruminococcus lactaris Firmicutes Widespread + neg neg neg + neg
Ruminococcus phoceensis Firmicutes Rare +
Ruminococcus torques Firmicutes Widespread + neg neg + neg neg
Rummeliibacillus pycnus Firmicutes Unlikely + neg
Rummeliibacillus stabekisii Firmicutes Rare + neg
Rummeliibacillus suwonensis Firmicutes Rare +
Ruoffia tabacinasalis Firmicutes Rare + neg neg
Ruthenibacterium lactatiformans Firmicutes Moderate neg neg neg
Saccharibacillus brassicae Firmicutes Unlikely +
Saccharofermentans acetigenes Firmicutes Non + + + w + + neg
Salimicrobium jeotgali Firmicutes Non + neg neg
Salinicoccus halodurans Firmicutes Unlikely + neg neg + + neg + + neg
Salinisphaera halophila Proteobacteria Non neg neg neg + + neg neg neg neg
Salinivibrio costicola Proteobacteria Rare neg neg
Salmonella bongori Proteobacteria Rare neg + +
Salmonella enterica Proteobacteria Unlikely neg neg + d(w) + w
Salmonella enterica subsp. arizonae Proteobacteria Non neg neg neg neg neg neg + +
Salmonella enterica subsp. enterica serovar Choleraesuis Proteobacteria Unlikely neg neg d(w) neg neg neg + +
Salmonella enterica subsp. enterica serovar Enteritidis Proteobacteria Rare neg neg + neg neg + +
Salmonella enterica subsp. enterica serovar Paratyphi A Proteobacteria Rare neg neg + neg neg d(neg) + +
Salmonella enterica subsp. enterica serovar Typhi Proteobacteria Rare neg neg + neg neg + +
Salmonella enterica subsp. enterica serovar Typhimurium Proteobacteria Rare neg neg + neg neg d(neg) + +
Sanguibacter massiliensis Actinobacteria Rare +
Sarcina maxima Firmicutes Rare + neg neg neg
Sarcina ventriculi Firmicutes Minor + neg neg neg
Scardovia inopinata Actinobacteria Rare + neg neg neg neg neg neg neg neg
Scardovia wiggsiae Actinobacteria Minor + neg neg
Schaalia cardiffensis Actinobacteria Rare + neg neg
Schaalia hyovaginalis Actinobacteria Rare + + neg d neg neg
Schaalia meyeri Actinobacteria Rare + neg neg neg d neg neg neg
Schaalia odontolytica Actinobacteria Moderate + neg neg d
Schaalia radingae Actinobacteria Rare + vr vr neg neg
Schaalia turicensis Actinobacteria Rare + d d d neg
Schleiferilactobacillus harbinensis Firmicutes Unlikely + neg neg neg + neg neg neg neg
Schleiferilactobacillus perolens Firmicutes Unlikely + neg neg neg d neg neg + neg
Schleiferilactobacillus shenzhenensis Firmicutes Unlikely
Schlesneria paludicola Planctomycetes Unlikely neg
Schnuerera ultunensis Firmicutes Unlikely +
Sebaldella termitidis Fusobacteria Unlikely neg +
Sediminibacillus massiliensis Firmicutes Rare +
Sediminispirochaeta smaragdinae Spirochaetes Unlikely neg
Selenomonas artemidis Firmicutes Rare neg neg neg neg neg neg d(+) neg
Selenomonas bovis Firmicutes Rare neg
Selenomonas flueggei Firmicutes Rare neg neg neg neg neg d(+) d(+) +
Selenomonas infelix Firmicutes Rare neg neg neg neg neg neg + d
Selenomonas noxia Firmicutes Rare neg neg neg neg neg neg neg
Selenomonas ruminantium Firmicutes Minor neg + neg + +
Selenomonas sputigena Firmicutes Rare neg neg neg neg d neg neg neg
Selenomonas timonae Firmicutes Unlikely neg
Sellimonas intestinalis Firmicutes Minor +
Senegalia massiliensis Firmicutes Rare + neg neg + + + +
Senegalimassilia anaerobia Actinobacteria Minor + neg neg neg neg neg neg neg neg
Senegalimassilia faecalis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Serratia ficaria Proteobacteria Rare neg d neg + + + + + neg
Serratia fonticola Proteobacteria Rare neg + + w + + + +
Serratia liquefaciens Proteobacteria Rare neg neg neg neg + + + +
Serratia marcescens Proteobacteria Minor neg + neg neg neg + + + +
Serratia odorifera Proteobacteria Rare neg d(neg) neg d(neg) w + + +
Serratia quinivorans Proteobacteria Rare neg d
Serratia ureilytica Proteobacteria Rare neg + +
Sharpea azabuensis Firmicutes Rare + neg neg
Shewanella algae Proteobacteria Unlikely neg neg neg
Shewanella carassii Proteobacteria Rare neg neg neg neg
Shewanella decolorationis Proteobacteria Rare neg
Shewanella xiamenensis Proteobacteria Rare neg
Shigella boydii Proteobacteria Rare neg neg d neg + d
Shigella dysenteriae Proteobacteria Unlikely neg neg d neg neg neg d
Shigella flexneri Proteobacteria Minor neg neg d neg neg d(+) d
Shigella sonnei Proteobacteria Minor neg neg neg neg neg + neg
Shuttleworthia satelles Firmicutes Rare + d neg
Silanimonas lenta Proteobacteria Non neg neg neg neg neg
Skermanella aerolata Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Slackia equolifaciens Actinobacteria Rare + neg neg
Slackia exigua Actinobacteria Rare + neg neg
Slackia faecicanis Actinobacteria Rare + neg
Slackia heliotrinireducens Actinobacteria Rare +
Slackia isoflavoniconvertens Actinobacteria Rare +
Slackia piriformis Actinobacteria Minor +
Sneathia sanguinegens Fusobacteria Rare neg neg neg neg neg
Sneathia vaginalis Fusobacteria Rare neg
Sodaliphilus pleomorphus Bacteroidetes Rare neg
Soleaferrea massiliensis Firmicutes Rare +
Solibacillus silvestris Firmicutes Unlikely +
Solibaculum mannosilyticum Firmicutes Rare vr neg neg neg
Solobacterium moorei Firmicutes Minor + neg neg neg neg
Sorangium cellulosum Proteobacteria Rare neg
Sphaerotilus natans Proteobacteria Unlikely neg
Sphingobacterium alimentarium Bacteroidetes Unlikely neg neg
Sphingobacterium faecium Bacteroidetes Rare neg neg neg neg neg neg neg neg
Sphingobacterium mizutaii Bacteroidetes Unlikely neg neg neg neg neg neg
Sphingobacterium multivorum Bacteroidetes Rare neg neg neg + neg neg neg
Sphingobacterium nematocida Bacteroidetes Unlikely neg neg neg + neg neg neg neg +
Sphingobacterium siyangense Bacteroidetes Rare neg neg neg neg
Sphingobacterium spiritivorum Bacteroidetes Rare neg neg neg + neg + neg neg
Sphingobacterium thalpophilum Bacteroidetes Unlikely neg + neg + neg neg neg
Sphingobium xenophagum Proteobacteria Unlikely neg neg neg neg neg neg neg
Sphingomonas adhaesiva Proteobacteria Unlikely neg neg neg neg neg neg neg
Sphingomonas aerolata Proteobacteria Non neg
Sphingomonas aestuarii Proteobacteria Unlikely neg
Sphingomonas azotifigens Proteobacteria Rare neg neg neg neg neg neg
Sphingomonas bisphenolicum Proteobacteria Unlikely neg neg neg neg
Sphingomonas echinoides Proteobacteria Unlikely neg neg neg neg neg neg neg
Sphingomonas glacialis Proteobacteria Unlikely neg neg neg neg
Sphingomonas hankookensis Proteobacteria Rare neg
Sphingomonas koreensis Proteobacteria Unlikely neg neg neg neg neg neg neg neg
Sphingomonas melonis Proteobacteria Rare neg neg neg d neg neg neg
Sphingomonas panni Proteobacteria Rare neg neg neg neg + neg neg neg
Sphingomonas paucimobilis Proteobacteria Rare neg neg neg neg neg neg neg neg
Sphingomonas pseudosanguinis Proteobacteria Rare neg
Sphingomonas sinipercae Proteobacteria Unlikely neg
Sphingomonas yabuuchiae Proteobacteria Rare neg
Sphingopyxis bauzanensis Proteobacteria Unlikely neg neg neg neg
Spiribacter roseus Proteobacteria Non neg
Spirochaeta coccoides Spirochaetes Rare neg
Spirochaeta thermophila Spirochaetes Non neg
Spirosoma linguale Bacteroidetes Unlikely neg
Sporobacter termitidis Firmicutes Rare +
Sporolactobacillus laevolacticus Firmicutes Unlikely + + d
Sporolactobacillus nakayamae subsp. racemicus Firmicutes Rare + d d
Sporomusa termitida Firmicutes Unlikely neg
Sporosarcina aquimarina Firmicutes Non + neg neg neg + neg neg neg neg
Sporosarcina koreensis Firmicutes Unlikely + neg
Sporosarcina luteola Firmicutes Rare vr neg + neg + neg neg neg neg
Sporosarcina siberiensis Firmicutes Unlikely + neg neg neg neg neg + neg neg
Stackebrandtia nassauensis Actinobacteria Unlikely + neg neg neg + neg neg +
Staphylococcus arlettae Firmicutes Rare + + vr
Staphylococcus aureus subsp. aureus Firmicutes Minor + + neg +
Staphylococcus auricularis Firmicutes Rare + vr neg
Staphylococcus capitis subsp. capitis Firmicutes Rare + neg neg neg
Staphylococcus caprae Firmicutes Rare + neg vr
Staphylococcus carnosus Firmicutes Rare + neg neg neg neg neg + w neg
Staphylococcus cohnii subsp. cohnii Firmicutes Rare + vr neg +
Staphylococcus condimenti Firmicutes Rare + +
Staphylococcus devriesei Firmicutes Rare + neg neg + + neg neg
Staphylococcus epidermidis Firmicutes Widespread + neg neg neg
Staphylococcus equorum subsp. equorum Firmicutes Rare + + vr
Staphylococcus gallinarum Firmicutes Rare + + + d
Staphylococcus haemolyticus Firmicutes Minor + + vr
Staphylococcus hominis subsp. hominis Firmicutes Minor + vr vr
Staphylococcus hyicus Firmicutes Rare + neg neg + neg neg neg
Staphylococcus intermedius Firmicutes Rare + + vr
Staphylococcus kloosii Firmicutes Rare + d neg
Staphylococcus lugdunensis Firmicutes Rare + neg neg neg
Staphylococcus nepalensis Firmicutes Rare + neg neg + + neg + d d
Staphylococcus pasteuri Firmicutes Minor + + neg
Staphylococcus petrasii Firmicutes Rare + neg neg neg + neg + neg neg
Staphylococcus pettenkoferi Firmicutes Rare + neg neg
Staphylococcus pseudintermedius Firmicutes Rare + neg neg neg w neg w neg neg
Staphylococcus saccharolyticus Firmicutes Rare + neg + neg neg neg neg
Staphylococcus saprophyticus subsp. saprophyticus Firmicutes Rare + + +
Staphylococcus schleiferi subsp. schleiferi Firmicutes Rare + neg
Staphylococcus simiae Firmicutes Rare + + d neg
Staphylococcus simulans Firmicutes Rare + + neg
Staphylococcus succinus subsp. succinus Firmicutes Unlikely +
Staphylococcus warneri Firmicutes Minor + + vr
Staphylococcus xylosus Firmicutes Rare + + vr
Starkeya novella Proteobacteria Unlikely neg
Stenotrophomonas acidaminiphila Proteobacteria Unlikely neg
Stenotrophomonas bentonitica Proteobacteria Unlikely neg neg neg neg neg neg
Stenotrophomonas maltophilia Proteobacteria Minor neg neg neg neg neg
Stenotrophomonas rhizophila Proteobacteria Rare neg
Stomatobaculum longum Firmicutes Minor vr neg neg neg
Streptobacillus hongkongensis Fusobacteria Rare neg
Streptobacillus moniliformis Fusobacteria Unlikely neg
Streptococcus acidominimus Firmicutes Unlikely + neg neg neg neg + + neg
Streptococcus agalactiae Firmicutes Minor + neg neg neg + neg neg neg neg
Streptococcus alactolyticus Firmicutes Rare + neg neg neg vr neg d(neg) neg neg
Streptococcus anginosus Firmicutes Widespread + neg neg neg neg neg neg neg neg
Streptococcus anginosus subsp. whileyi Firmicutes Rare + neg d(neg) neg
Streptococcus australis Firmicutes Minor + neg neg neg neg neg neg neg neg
Streptococcus caballi Firmicutes Rare + neg neg
Streptococcus canis Firmicutes Unlikely + neg neg neg w neg neg neg neg
Streptococcus castoreus Firmicutes Rare + neg neg
Streptococcus constellatus subsp. constellatus Firmicutes Minor + neg neg neg neg neg d(neg) neg
Streptococcus cristatus Firmicutes Minor + neg neg neg
Streptococcus danieliae Firmicutes Rare + neg neg
Streptococcus didelphis Firmicutes Rare + neg neg
Streptococcus downei Firmicutes Rare + neg neg neg + neg neg
Streptococcus dysgalactiae Firmicutes Rare + neg d(neg)
Streptococcus dysgalactiae subsp. equisimilis Firmicutes Unlikely + d neg neg
Streptococcus equi subsp. equi Firmicutes Rare + neg neg neg
Streptococcus equinus Firmicutes Moderate + neg neg neg neg neg neg neg neg
Streptococcus ferus Firmicutes Rare + neg neg neg neg neg d d neg
Streptococcus gallolyticus subsp. gallolyticus Firmicutes Minor + neg neg neg neg neg + neg neg
Streptococcus gordonii Firmicutes Minor + neg neg neg neg neg neg vr neg
Streptococcus gwangjuense Firmicutes Unlikely + neg neg
Streptococcus henryi Firmicutes Rare + + neg
Streptococcus hyovaginalis Firmicutes Rare + neg neg neg neg + + neg
Streptococcus ilei Firmicutes Unlikely + neg neg + d d d neg
Streptococcus infantarius Firmicutes Minor + neg neg neg neg neg neg neg neg
Streptococcus infantarius subsp. infantarius Firmicutes Minor + neg neg
Streptococcus infantis Firmicutes Minor + neg neg
Streptococcus intermedius Firmicutes Moderate + neg neg neg neg neg neg neg
Streptococcus koreensis Firmicutes Unlikely + neg neg
Streptococcus lactarius Firmicutes Rare + neg neg
Streptococcus lutetiensis Firmicutes Minor + neg neg neg neg neg neg neg neg
Streptococcus macedonicus Firmicutes Rare + neg neg neg neg neg neg neg
Streptococcus merionis Firmicutes Rare + neg neg neg
Streptococcus mitis Firmicutes Moderate + neg neg neg neg neg neg vr neg
Streptococcus mutans Firmicutes Moderate + neg neg neg neg neg + + neg
Streptococcus oralis Firmicutes Minor + neg neg vr vr neg neg neg neg
Streptococcus oralis subsp. tigurinus Firmicutes Rare + neg neg
Streptococcus orisratti Firmicutes Rare + neg neg
Streptococcus ovis Firmicutes Rare + + +
Streptococcus pantholopis Firmicutes Rare + neg neg neg neg neg + + neg
Streptococcus parasanguinis Firmicutes Widespread + neg neg neg neg neg neg vr neg
Streptococcus parasuis Firmicutes Rare + neg neg
Streptococcus parauberis Firmicutes Rare + neg d(+) neg neg neg + + neg
Streptococcus pasteurianus Firmicutes Minor + neg neg
Streptococcus periodonticum Firmicutes Unlikely + neg neg
Streptococcus peroris Firmicutes Rare + neg neg
Streptococcus pluranimalium Firmicutes Unlikely + neg neg neg neg d d neg
Streptococcus plurextorum Firmicutes Rare + neg neg neg neg neg neg neg neg
Streptococcus pneumoniae Firmicutes Minor + neg + + neg neg
Streptococcus porci Firmicutes Rare + neg neg neg neg neg neg neg neg
Streptococcus pseudopneumoniae Firmicutes Minor + neg neg
Streptococcus pseudoporcinus Firmicutes Rare + + + +
Streptococcus pyogenes Firmicutes Minor + neg neg neg + neg neg neg neg
Streptococcus rubneri Firmicutes Rare + neg neg neg neg neg neg d neg
Streptococcus salivarius Firmicutes Widespread + neg neg neg neg neg neg neg neg
Streptococcus sanguinis Firmicutes Moderate + neg neg neg neg neg neg d(+) neg
Streptococcus sinensis Firmicutes Rare + neg neg
Streptococcus sobrinus Firmicutes Minor + neg neg neg neg neg + d
Streptococcus suis Firmicutes Rare + neg neg neg neg neg neg neg neg
Streptococcus thermophilus Firmicutes Widespread + neg neg neg neg neg neg neg
Streptococcus thoraltensis Firmicutes Rare + neg neg neg neg neg + + neg
Streptococcus timonensis Firmicutes Minor + neg neg neg neg neg neg neg neg
Streptococcus uberis Firmicutes Rare + neg neg neg neg neg + + neg
Streptococcus vestibularis Firmicutes Moderate + neg neg neg neg neg neg neg neg
Streptococcus viridans Firmicutes Rare +
Streptomyces albus Actinobacteria Unlikely +
Streptomyces flavogriseus Actinobacteria Unlikely +
Streptomyces hygroscopicus Actinobacteria Unlikely +
Streptomyces koyangensis Actinobacteria Rare +
Streptomyces lividans Actinobacteria Unlikely +
Streptomyces massiliensis Actinobacteria Unlikely +
Streptomyces misionensis Actinobacteria Rare +
Streptomyces specialis Actinobacteria Unlikely +
Streptomyces thermoviolaceus Actinobacteria Rare + neg
Streptomyces thermovulgaris Actinobacteria Unlikely +
Streptomyces violaceusniger Actinobacteria Unlikely +
Streptosporangium roseum Actinobacteria Unlikely +
Subdoligranulum formicile Firmicutes Rare neg
Subdoligranulum variabile Firmicutes Moderate neg
Succinatimonas hippei Proteobacteria Minor neg neg neg neg
Succinivibrio dextrinosolvens Proteobacteria Rare neg neg neg +
Sulfurospirillum deleyianum Proteobacteria Rare neg
Sutcliffiella cohnii Firmicutes Unlikely + neg
Sutterella faecalis Proteobacteria Rare neg neg neg neg
Sutterella massiliensis Proteobacteria Rare neg
Sutterella megalosphaeroides Proteobacteria Rare neg
Sutterella parvirubra Proteobacteria Minor neg
Sutterella seckii Proteobacteria Rare neg
Sutterella stercoricanis Proteobacteria Rare neg
Sutterella timonensis Proteobacteria Rare neg
Sutterella wadsworthensis Proteobacteria Widespread neg neg neg neg
Symbiobacterium thermophilum Firmicutes Unlikely neg
Symbiobacterium toebii Firmicutes Unlikely neg
Syntrophobotulus glycolicus Firmicutes Unlikely neg
Syntrophococcus sucromutans Firmicutes Rare neg
Syntrophomonas zehnderi Firmicutes Rare vr
Tannerella forsythia Bacteroidetes Minor neg + neg + neg
Tannerella serpentiformis Bacteroidetes Unlikely neg
Taonella mepensis Proteobacteria Unlikely neg
Tatumella ptyseos Proteobacteria Rare neg neg neg neg w neg neg neg
Tepidanaerobacter acetatoxydans Firmicutes Rare vr
Tepiditoga spiralis Thermotogae Unlikely neg
Terrahaemophilus aromaticivorans Proteobacteria Rare neg
Terribacillus aidingensis Firmicutes Rare + neg neg neg neg neg + neg neg
Terribacillus halophilus Firmicutes Unlikely + neg + neg
Terrisporobacter glycolicus Firmicutes Minor + + +
Terrisporobacter mayombei Firmicutes Rare + + + +
Terrisporobacter othiniensis Firmicutes Rare +
Terrisporobacter petrolearius Firmicutes Rare + +
Tessaracoccus massiliensis Actinobacteria Rare + neg
Tetragenococcus halophilus Firmicutes Unlikely + + neg neg neg neg
Tetragenococcus koreensis Firmicutes Rare + neg neg neg neg neg neg neg
Tetragenococcus solitarius Firmicutes Rare + neg neg neg neg neg neg neg neg
Thalassobacillus devorans Firmicutes Non +
Thauera terpenica Proteobacteria Rare neg
Thermaerobacter marianensis Firmicutes Non vr
Thermoanaerobacterium thermosaccharolyticum Firmicutes Rare neg neg
Thermobacillus composti Firmicutes Unlikely neg
Thermobispora bispora Actinobacteria Unlikely +
Thermoclostridium stercorarium Firmicutes Unlikely neg neg neg neg neg neg neg neg
Thermolithobacter ferrireducens Firmicutes Non +
Thermomonas carbonis Proteobacteria Unlikely neg
Thermomonospora curvata Actinobacteria Unlikely +
Thermophilibacter immobilis Actinobacteria Unlikely +
Thermophilibacter mediterraneus Actinobacteria Rare +
Thermophilibacter provencensis Actinobacteria Minor +
Thermus scotoductus Deinococcus-Thermus Unlikely neg
Thiomonas islandica Proteobacteria Unlikely neg
Thomasclavelia saccharogumia Firmicutes Rare +
Thomasclavelia spiroformis Firmicutes Moderate + neg neg
Tidjanibacter inops Bacteroidetes Moderate
Tidjanibacter massiliensis Bacteroidetes Rare neg
Timonella senegalensis Actinobacteria Rare + neg neg neg
Tissierella praeacuta Firmicutes Rare +
Trabulsiella guamensis Proteobacteria Rare neg neg neg neg w neg + +
Tractidigestivibacter scatoligenes Actinobacteria Rare + neg neg neg
Traorella massiliensis Firmicutes Rare neg neg neg neg neg neg neg neg neg
Treponema berlinense Spirochaetes Rare neg
Treponema brennaborense Spirochaetes Unlikely neg
Treponema denticola Spirochaetes Rare neg
Treponema medium Spirochaetes Unlikely neg
Treponema parvum Spirochaetes Unlikely neg
Treponema pectinovorum Spirochaetes Rare neg neg neg neg neg neg neg neg
Treponema pedis Spirochaetes Unlikely neg
Treponema peruense Spirochaetes Rare neg
Treponema phagedenis Spirochaetes Unlikely neg
Treponema primitia Spirochaetes Unlikely neg
Treponema ruminis Spirochaetes Unlikely neg
Treponema socranskii Spirochaetes Unlikely neg neg neg neg neg neg neg neg
Treponema succinifaciens Spirochaetes Rare neg neg neg neg neg
Treponema vincentii Spirochaetes Rare neg
Tropheryma whipplei Actinobacteria Unlikely neg
Trueperella bernardiae Actinobacteria Rare + + d(+) + neg neg +
Trueperella pyogenes Actinobacteria Rare + d d neg d neg
Tsukamurella pulmonis Actinobacteria Unlikely + neg neg + +
Tumebacillus avium Firmicutes Unlikely +
Tumebacillus permanentifrigoris Firmicutes Unlikely +
Turicibacter sanguinis Firmicutes Moderate +
Turicimonas muris Proteobacteria Rare neg neg neg
Tyzzerella nexilis Firmicutes Widespread +
Ureaplasma parvum Tenericutes Rare unk
Ureaplasma urealyticum Tenericutes Rare unk
Ureibacillus massiliensis Firmicutes Rare neg neg neg neg
Ureibacillus suwonensis Firmicutes Unlikely neg neg
Ureibacillus thermosphaericus Firmicutes Non neg neg neg neg neg neg neg neg
Urinicoccus timonensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Urmitella timonensis Firmicutes Rare +
Uruburuella suis Proteobacteria Rare neg
Vaginimicrobium propionicum Actinobacteria Unlikely + neg neg neg
Vagococcus carniphilus Firmicutes Rare + + neg neg
Vagococcus fluvialis Firmicutes Rare + neg neg neg d neg + d neg
Vagococcus lutrae Firmicutes Rare + neg +
Vagococcus penaei Firmicutes Rare + neg neg
Vagococcus teuberi Firmicutes Rare + neg neg
Vampirovibrio chlorellavorus Cyanobacteria Unlikely neg
Varibaculum cambriense Actinobacteria Rare + neg neg
Varibaculum timonense Actinobacteria Rare + neg + neg
Variovorax boronicumulans Proteobacteria Rare neg
Variovorax ginsengisoli Proteobacteria Unlikely neg
Variovorax paradoxus Proteobacteria Unlikely neg
Veillonella atypica Firmicutes Widespread neg neg neg
Veillonella denticariosi Firmicutes Rare neg
Veillonella dispar Firmicutes Moderate neg neg neg neg
Veillonella infantium Firmicutes Rare neg
Veillonella magna Firmicutes Rare neg
Veillonella montpellierensis Firmicutes Rare neg neg neg neg neg
Veillonella nakazawae Firmicutes Rare neg
Veillonella parvula Firmicutes Widespread neg neg neg neg
Veillonella ratti Firmicutes Rare neg
Veillonella rodentium Firmicutes Unlikely neg
Veillonella rogosae Firmicutes Minor neg
Veillonella tobetsuensis Firmicutes Minor neg
Vescimonas coprocola Firmicutes Rare neg
Vescimonas fastidiosa Firmicutes Rare neg
Vibrio alginolyticus Proteobacteria Rare neg neg neg neg neg + neg
Vibrio cholerae Proteobacteria Unlikely neg neg neg neg d(neg) neg +
Vibrio cincinnatiensis Proteobacteria Rare neg neg neg neg + + + neg
Vibrio fluvialis Proteobacteria Rare neg neg neg neg neg neg + neg
Vibrio furnissii Proteobacteria Rare neg neg neg neg w neg + neg
Vibrio metoecus Proteobacteria Rare neg +
Vibrio metschnikovii Proteobacteria Rare neg neg neg neg + d d(+) d
Vibrio mimicus Proteobacteria Rare neg neg neg neg d(neg) neg + neg
Vibrio natriegens Proteobacteria Rare neg neg neg neg + neg + neg
Vibrio neptunius Proteobacteria Unlikely neg neg neg neg
Vibrio parahaemolyticus Proteobacteria Rare neg neg neg d neg d(+) neg
Vibrio proteolyticus Proteobacteria Rare neg neg neg neg neg + +
Vibrio rumoiensis Proteobacteria Unlikely neg +
Vibrio vulnificus Proteobacteria Rare neg neg neg neg neg d d
Victivallis vadensis Lentisphaerae Minor neg
Virgibacillus dakarensis Firmicutes Rare +
Virgibacillus dokdonensis Firmicutes Rare vr w + neg +
Virgibacillus doumboii Firmicutes Rare + neg
Virgibacillus halodenitrificans Firmicutes Rare vr neg neg neg d neg
Virgibacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg
Virgibacillus massiliensis Firmicutes Rare +
Virgibacillus ndiopensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Virgibacillus pantothenticus Firmicutes Rare + neg neg neg + d neg
Virgibacillus profundi Firmicutes Unlikely vr + neg w
Virgibacillus proomii Firmicutes Rare + neg neg neg neg + neg neg neg
Virgibacillus salexigens Firmicutes Unlikely + neg + d(+)
Virgibacillus senegalensis Firmicutes Non + neg
Virgibacillus siamensis Firmicutes Unlikely + neg neg
Vitreoscilla massiliensis Proteobacteria Rare neg
Vitreoscilla stercoraria Proteobacteria Rare neg
Weeksella virosa Firmicutes Rare neg neg neg neg neg neg neg
Weissella cibaria Firmicutes Minor + neg neg neg neg neg neg neg neg
Weissella confusa Firmicutes Minor + neg neg neg neg neg neg neg neg
Weissella paramesenteroides Firmicutes Minor + neg neg neg neg neg neg neg neg
Weissella viridescens Firmicutes Minor +
Weizmannia coagulans Firmicutes Rare + neg neg neg + d neg d neg
Winkia neuii Actinobacteria Rare + d d + + + + d
Wolinella succinogenes Proteobacteria Rare neg
Xanthomonas massiliensis Proteobacteria Unlikely neg
Xylanimonas cellulosilytica Actinobacteria Rare + +
Yangia pacifica Proteobacteria Non neg
Yersinia aldovae Proteobacteria Rare neg neg neg neg + + d(+) +
Yersinia aleksiciae Proteobacteria Rare neg neg vr + +
Yersinia alsatica Proteobacteria Rare neg neg neg neg + + + + neg
Yersinia artesiana Proteobacteria Rare neg neg neg neg + + + + neg
Yersinia bercovieri Proteobacteria Rare neg neg neg neg w d + +
Yersinia enterocolitica subsp. enterocolitica Proteobacteria Unlikely neg neg neg neg + d + +
Yersinia frederiksenii Proteobacteria Rare neg neg neg neg + neg + +
Yersinia intermedia Proteobacteria Rare neg neg neg neg + d(+) + +
Yersinia kristensenii subsp. kristensenii Proteobacteria Rare neg neg neg neg + d(w) + +
Yersinia kristensenii subsp. rochesterensis Proteobacteria Rare neg neg + vr + +
Yersinia massiliensis Proteobacteria Rare neg + +
Yersinia mollaretii Proteobacteria Rare neg neg neg neg + vr + +
Yersinia occitanica Proteobacteria Rare neg neg neg neg + d + + neg
Yersinia pestis Proteobacteria Non neg neg d neg + d
Yersinia proxima Proteobacteria Rare neg neg neg neg + + + + neg
Yersinia pseudotuberculosis Proteobacteria Unlikely neg neg neg + neg + neg
Yersinia rohdei Proteobacteria Rare neg neg w neg + +
Yersinia vastinensis Proteobacteria Rare neg neg neg neg + + + + neg
Yokenella regensburgei Proteobacteria Rare neg neg neg neg neg neg + neg neg
Yonghaparkia alkaliphila Actinobacteria Non +
Zunongwangia profunda Bacteroidetes Non neg neg

Click on table headings to sort. Table abbreviations: Adon - adonitol; Dulc - dulcitol; Eryt - erythritol; Glyc - glycerol; Inos - inositol; Mann - mannitol; Srbt - sorbitol; Xyll - xylitol;

Miscellaneous
Bacteria Phylum Coloniser Gram Arbu EtOH Glct 2KG 5KG αMGlc βMGlc MDM MDX NAGA Sali
Abiotrophia defectiva Firmicutes Minor + neg neg neg neg neg neg neg neg neg neg
Absiella argi Firmicutes Rare + neg
Absiella innocuum Firmicutes Moderate
Absiella tortuosum Firmicutes Rare + w
Acetanaerobacterium elongatum Firmicutes Rare + +
Acetatifactor muris Firmicutes Rare +
Acetitomaculum ruminis Firmicutes Rare +
Acetivibrio cellulolyticus Firmicutes Rare neg
Acetivibrio clariflavus Firmicutes Unlikely vr
Acetivibrio ethanolgignens Firmicutes Minor neg +
Acetivibrio saccincola Firmicutes Unlikely +
Acetivibrio thermocellus Firmicutes Unlikely neg
Acetoanaerobium sticklandii Firmicutes Rare + neg
Acetobacter pasteurianus Proteobacteria Unlikely neg +
Acetobacterium woodii Firmicutes Rare +
Acetomicrobium hydrogeniformans Synergistetes Unlikely neg
Achromobacter denitrificans Proteobacteria Unlikely neg neg neg
Achromobacter insuavis Proteobacteria Unlikely neg
Achromobacter spanius Proteobacteria Unlikely neg
Achromobacter xylosoxidans Proteobacteria Rare neg neg
Acidaminococcus fermentans Firmicutes Widespread neg neg neg neg
Acidaminococcus intestini Firmicutes Moderate neg
Acidaminococcus massiliensis Firmicutes Rare neg
Acidaminococcus provencensis Firmicutes Rare neg neg neg neg + neg neg neg neg neg
Acidaminococcus timonensis Firmicutes Rare neg
Acidipropionibacterium acidipropionici Actinobacteria Rare + + + + neg +
Acidipropionibacterium jensenii Actinobacteria Rare + neg vr vr neg d(neg) d(w)
Acidisarcina polymorpha Acidobacteria Rare neg
Acidovorax facilis Proteobacteria Rare neg
Acidovorax sp. strain KKS102 Proteobacteria Rare neg
Acidovorax temperans Proteobacteria Rare neg
Acidovorax wautersii Proteobacteria Rare neg
Acinetobacter baumannii Proteobacteria Unlikely neg
Acinetobacter bereziniae Proteobacteria Unlikely neg
Acinetobacter calcoaceticus Proteobacteria Rare neg neg
Acinetobacter guillouiae Proteobacteria Rare neg
Acinetobacter haemolyticus Proteobacteria Unlikely neg
Acinetobacter idrijaensis Proteobacteria Rare
Acinetobacter johnsonii Proteobacteria Rare neg neg
Acinetobacter junii Proteobacteria Rare neg
Acinetobacter lwoffii Proteobacteria Unlikely neg
Acinetobacter parvus Proteobacteria Unlikely neg
Acinetobacter pittii Proteobacteria Unlikely neg neg
Acinetobacter radioresistens Proteobacteria Rare neg
Acinetobacter schindleri Proteobacteria Unlikely neg
Acinetobacter septicus Proteobacteria Unlikely neg
Acinetobacter towneri Proteobacteria Unlikely neg neg neg
Acinetobacter ursingii Proteobacteria Unlikely neg
Acinetobacter variabilis Proteobacteria Unlikely neg
Actinobacillus capsulatus Proteobacteria Rare neg + +
Actinobacillus minor Proteobacteria Unlikely neg
Actinobacillus pleuropneumoniae Proteobacteria Rare neg neg
Actinobacillus succinogenes Proteobacteria Rare neg + + neg + neg neg neg neg +
Actinobacillus ureae Proteobacteria Non neg neg
Actinobaculum massiliense Actinobacteria Minor +
Actinomyces bouchesdurhonensis Actinobacteria Unlikely +
Actinomyces canis Actinobacteria Non + neg neg
Actinomyces dentalis Actinobacteria Non + neg
Actinomyces georgiae Actinobacteria Non + neg
Actinomyces gerencseriae Actinobacteria Unlikely + d(+)
Actinomyces graevenitzii Actinobacteria Minor + + neg neg neg + neg
Actinomyces ihuae Actinobacteria Rare +
Actinomyces israelii Actinobacteria Non +
Actinomyces johnsonii Actinobacteria Rare + neg
Actinomyces marseillensis Actinobacteria Rare +
Actinomyces massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Actinomyces mediterranea Actinobacteria Rare +
Actinomyces minihominis Actinobacteria Rare +
Actinomyces naeslundii Actinobacteria Minor + vr d
Actinomyces oris Actinobacteria Rare + neg d(neg)
Actinomyces pacaensis Actinobacteria Rare +
Actinomyces polynesiensis Actinobacteria Rare + neg + neg + +
Actinomyces provencensis Actinobacteria Rare +
Actinomyces sp. ph3 Actinobacteria Rare +
Actinomyces timonensis Actinobacteria Rare + vr neg neg neg neg neg + +
Actinomyces urogenitalis Actinobacteria Rare + vr
Actinomyces viscosus Actinobacteria Minor + vr
Actinosynnema mirum Actinobacteria Non + neg neg
Actinotignum schaalii Actinobacteria Rare +
Acutalibacter muris Firmicutes Rare +
Acutalibacter timonensis Firmicutes Minor
Adhaeribacter aquaticus Bacteroidetes Unlikely neg
Adlercreutzia caecimuris Actinobacteria Rare +
Adlercreutzia equolifaciens Actinobacteria Moderate +
Adlercreutzia equolifaciens subsp. celatus Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Adlercreutzia hattorii Actinobacteria Rare +
Adlercreutzia mucosicola Actinobacteria Rare +
Adlercreutzia rubneri Actinobacteria Rare +
Aeribacillus pallidus Firmicutes Unlikely + + + +
Aerococcus vaginalis Firmicutes Non + neg neg neg neg neg neg neg + neg
Aerococcus viridans Firmicutes Rare + neg neg neg neg + vr neg neg + neg
Aeromicrobium massiliense Actinobacteria Rare +
Aeromicrobium tamlense Actinobacteria Rare +
Aeromonas allosaccharophila Proteobacteria Rare neg neg neg
Aeromonas bestiarum Proteobacteria Rare neg neg d d(+)
Aeromonas caviae Proteobacteria Unlikely neg neg +
Aeromonas dhakensis Proteobacteria Rare neg + + neg neg + neg neg + +
Aeromonas encheleia Proteobacteria Unlikely neg neg +
Aeromonas enteropelogenes Proteobacteria Rare neg neg
Aeromonas eucrenophila Proteobacteria Non neg +
Aeromonas hydrophila Proteobacteria Unlikely neg neg +
Aeromonas hydrophila subsp. hydrophila Proteobacteria Unlikely neg +
Aeromonas jandaei Proteobacteria Rare neg neg neg neg
Aeromonas media Proteobacteria Rare neg neg
Aeromonas popoffii Proteobacteria Unlikely neg + neg
Aeromonas salmonicida Proteobacteria Unlikely neg d d d
Aeromonas schubertii Proteobacteria Non neg neg neg
Aeromonas sobria Proteobacteria Rare neg neg
Aeromonas taiwanensis Proteobacteria Non neg neg neg neg + +
Aeromonas tecta Proteobacteria Rare neg + + neg + d(+)
Aeromonas trota Proteobacteria Rare neg neg neg
Aeromonas veronii Proteobacteria Rare neg neg + +
Aestuariimicrobium kwangyangense Actinobacteria Rare +
Afipia birgiae Proteobacteria Unlikely neg
Afipia broomeae Proteobacteria Rare neg
Afipia lausannensis Proteobacteria Unlikely neg
Africanella massiliensis Firmicutes Rare +
Agathobacter ruminis Firmicutes Rare + + neg neg neg neg neg neg
Agathobaculum butyriciproducens Firmicutes Moderate + +
Agathobaculum desmolans Firmicutes Minor + neg
Aggregatibacter actinomycetemcomitans Proteobacteria Rare neg neg
Aggregatibacter aphrophilus Proteobacteria Minor neg neg neg
Aggregatibacter segnis Proteobacteria Minor neg neg
Agrilactobacillus composti Firmicutes Unlikely + w w
Agrobacterium radiobacter Proteobacteria Unlikely neg + +
Agrobacterium rhizogenes Proteobacteria Unlikely neg +
Agrobacterium tumefaciens Proteobacteria Unlikely neg
Agrococcus casei Actinobacteria Rare +
Agrococcus jejuensis Actinobacteria Rare + neg neg
Agrococcus jenensis Actinobacteria Rare + neg
Agrococcus terreus Actinobacteria Unlikely + w
Akkermansia glycaniphila Verrucomicrobia Rare neg
Akkermansia muciniphila Verrucomicrobia Widespread neg neg
Alcaligenes faecalis Proteobacteria Rare neg neg
Alcaligenes faecalis subsp. faecalis Proteobacteria Unlikely neg neg
Aliagarivorans marinus Proteobacteria Rare neg
Aliarcobacter butzleri Proteobacteria Rare neg
Aliarcobacter cryaerophilus Proteobacteria Rare neg
Aliarcobacter skirrowii Proteobacteria Rare neg
Alicyclobacillus acidocaldarius Firmicutes Rare + + neg neg
Aliiruegeria sabulilitoris Proteobacteria Unlikely neg
Alistipes communis Bacteroidetes Rare neg neg
Alistipes dispar Bacteroidetes Rare neg vr
Alistipes finegoldii Bacteroidetes Moderate neg +
Alistipes ihumii Bacteroidetes Moderate neg
Alistipes indistinctus Bacteroidetes Moderate neg +
Alistipes inops Bacteroidetes Rare neg
Alistipes marseilloanorexicus Bacteroidetes Rare neg
Alistipes massiliensis Bacteroidetes Rare neg
Alistipes megaguti Bacteroidetes Rare neg + neg neg w neg neg neg + +
Alistipes montrealensis Bacteroidetes Rare neg
Alistipes obesi Bacteroidetes Moderate neg
Alistipes onderdonkii Bacteroidetes Moderate neg
Alistipes onderdonkii subsp. vulgaris Bacteroidetes Rare neg vr
Alistipes provencensis Bacteroidetes Rare neg neg neg neg w neg w neg neg neg
Alistipes putredinis Bacteroidetes Widespread neg
Alistipes senegalensis Bacteroidetes Moderate neg
Alistipes shahii Bacteroidetes Widespread neg
Alistipes timonensis Bacteroidetes Moderate neg
Alkalibacillus halophilus Firmicutes Unlikely +
Alkalihalobacillus alcalophilus Firmicutes Unlikely +
Alkalihalobacillus gibsonii Firmicutes Rare +
Alkalihalobacillus halodurans Firmicutes Rare + + neg neg neg neg neg neg + +
Alkalihalobacillus oshimensis Firmicutes Unlikely +
Alkaliphilus metalliredigens Firmicutes Rare +
Alkaliphilus oremlandii Firmicutes Non +
Alkaliphilus transvaalensis Firmicutes Non +
Alkanindiges illinoisensis Proteobacteria Non vr
Allisonella histaminiformans Firmicutes Minor neg
Allobaculum fili Firmicutes Rare +
Allobaculum mucilyticum Firmicutes Rare +
Alloprevotella rava Bacteroidetes Rare neg neg
Alloprevotella tannerae Bacteroidetes Minor neg neg
Alloscardovia omnicolens Actinobacteria Minor + +
Alteracholeplasma palmae Tenericutes Rare unk
Alterileibacterium massiliense Firmicutes Rare neg
Amaricoccus kaplicensis Proteobacteria Unlikely neg
Amedibacillus dolichus Firmicutes Minor + neg
Amedibacterium intestinale Firmicutes Rare + +
Aminipila butyrica Firmicutes Rare +
Aminipila terrae Firmicutes Rare +
Aminomonas paucivorans Synergistetes Rare neg
Ammonifex degensii Firmicutes Non neg
Amycolatopsis alba Actinobacteria Rare + neg + +
Amycolatopsis mediterranei Actinobacteria Rare + neg neg +
Amycolatopsis thailandensis Actinobacteria Rare +
Amycolatopsis vancoresmycina Actinobacteria Unlikely +
Anaerobiospirillum succiniciproducens Proteobacteria Rare neg neg
Anaerobiospirillum thomasii Proteobacteria Rare neg neg
Anaerobutyricum hallii Firmicutes Widespread + neg
Anaerobutyricum soehngenii Firmicutes Rare +
Anaerococcus hydrogenalis Firmicutes Rare + neg
Anaerococcus jeddahensis Firmicutes Rare +
Anaerococcus lactolyticus Firmicutes Rare +
Anaerococcus marasmi Firmicutes Rare + neg neg + + neg neg neg + +
Anaerococcus mediterraneensis Firmicutes Rare +
Anaerococcus murdochii Firmicutes Rare +
Anaerococcus obesiensis Firmicutes Rare +
Anaerococcus octavius Firmicutes Rare + neg
Anaerococcus prevotii Firmicutes Minor +
Anaerococcus provencensis Firmicutes Rare +
Anaerococcus rubeinfantis Firmicutes Rare + neg neg neg + neg neg neg
Anaerococcus senegalensis Firmicutes Rare +
Anaerococcus tetradius Firmicutes Rare +
Anaerococcus vaginalis Firmicutes Minor +
Anaerocolumna aminovalerica Firmicutes Rare +
Anaerocolumna cellulosilytica Firmicutes Rare +
Anaerocolumna chitinilytica Firmicutes Rare +
Anaerocolumna sedimenticola Firmicutes Rare + +
Anaerocolumna xylanovorans Firmicutes Rare +
Anaerofilum pentosovorans Firmicutes Rare +
Anaerofustis stercorihominis Firmicutes Minor + neg
Anaeroglobus geminatus Firmicutes Minor neg neg
Anaeromassilibacillus senegalensis Firmicutes Rare neg
Anaerorhabdus furcosa Firmicutes Rare neg
Anaerosalibacter bizertensis Firmicutes Rare +
Anaerosalibacter massiliensis Firmicutes Rare + +
Anaerosphaera massiliensis Firmicutes Rare + neg neg neg + neg neg neg neg neg
Anaerospora hongkongensis Firmicutes Rare neg
Anaerostipes butyraticus Firmicutes Rare + +
Anaerostipes caccae Firmicutes Moderate + + neg neg neg + neg neg + w
Anaerostipes coli Firmicutes Rare +
Anaerostipes hadrus Firmicutes Moderate + d(+)
Anaerostipes hominis Firmicutes Rare vr
Anaerostipes rhamnosivorans Firmicutes Rare vr w +
Anaerostipes rhamnosus Firmicutes Rare +
Anaerotignum faecicola Firmicutes Rare +
Anaerotignum lactatifermentans Firmicutes Moderate neg
Anaerotignum neopropionicum Firmicutes Rare neg +
Anaerotignum propionicum Firmicutes Rare +
Anaerotruncus colihominis Firmicutes Moderate + neg
Anaerotruncus massiliensis Firmicutes Rare neg neg neg + neg neg + neg neg
Anaerotruncus rubiinfantis Firmicutes Moderate +
Anaerovorax odorimutans Firmicutes Rare vr
Ancylobacter polymorphus Proteobacteria Rare neg neg +
Aneurinibacillus aneurinilyticus Firmicutes Rare + neg
Aneurinibacillus migulanus Firmicutes Rare + neg
Angelakisella massiliensis Firmicutes Rare neg
Anoxybacillus flavithermus Firmicutes Non +
Anoxybacillus gonensis Firmicutes Unlikely +
Anoxynatronum sibiricum Firmicutes Rare +
Anseongella ginsenosidimutans Bacteroidetes Unlikely neg
Aquabacterium citratiphilum Proteobacteria Rare neg
Aquabacterium commune Proteobacteria Rare neg
Aquabacterium parvum Proteobacteria Rare neg
Aquamicrobium lusatiense Proteobacteria Unlikely neg
Aquincola tertiaricarbonis Proteobacteria Non neg
Arabia massiliensis Actinobacteria Rare neg
Arachnia propionica Actinobacteria Rare +
Arcanobacterium haemolyticum Actinobacteria Rare + neg
Arthrobacter agilis Actinobacteria Non +
Arthrobacter castelli Actinobacteria Rare +
Arthrobacter citreus Actinobacteria Unlikely vr
Arthrobacter gandavensis Actinobacteria Unlikely + neg neg neg neg neg neg
Arthrobacter globiformis Actinobacteria Unlikely +
Arthrobacter koreensis Actinobacteria Unlikely +
Arthrobacter luteolus Actinobacteria Unlikely +
Arthrobacter parietis Actinobacteria Non +
Arthrobacter pigmenti Actinobacteria Non +
Arthrobacter russicus Actinobacteria Unlikely +
Asaccharospora irregularis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Asticcacaulis biprosthecium Proteobacteria Unlikely neg
Asticcacaulis excentricus Proteobacteria Unlikely neg
Atlantibacter hermannii Proteobacteria Rare neg neg neg d
Atopobium minutum Actinobacteria Minor + neg
Atopostipes suicloacalis Firmicutes Unlikely +
Aureimonas altamirensis Proteobacteria Unlikely neg
Aureimonas ureilytica Proteobacteria Unlikely neg
Averyella dalhousiensis Proteobacteria Rare neg vr +
Azoarcus pumilus Proteobacteria Rare neg
Azospirillum lipoferum Proteobacteria Rare neg neg +
Azotobacter vinelandii Proteobacteria Non neg
Bacilliculturomica massiliensis Firmicutes Rare +
Bacillus altitudinis Firmicutes Rare +
Bacillus amyloliquefaciens Firmicutes Rare + + neg neg neg neg neg neg d(+) +
Bacillus andreraoultii Firmicutes Rare + + neg neg neg neg neg neg + +
Bacillus aneurinolyticus Firmicutes Rare + neg
Bacillus anthracis Firmicutes Non + d neg neg neg neg neg neg + neg
Bacillus atrophaeus Firmicutes Rare + + neg neg neg vr neg neg + +
Bacillus badius DSM 23T Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus badius DSM 5610 Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus baekryungensis Firmicutes Non +
Bacillus benzoevorans Firmicutes Rare + neg neg
Bacillus caccae Firmicutes Rare +
Bacillus cereus Firmicutes Minor + + d(+) neg neg neg neg neg neg + d(+)
Bacillus circulans Firmicutes Rare + + + neg d(neg) vr neg + + +
Bacillus clausii Firmicutes Rare + + neg neg neg neg neg neg + +
Bacillus cytotoxicus Firmicutes Rare + + neg neg neg neg neg neg + +
Bacillus dakarensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Bacillus endophyticus Firmicutes Unlikely + neg
Bacillus firmus Firmicutes Rare + + vr neg neg neg neg neg + vr
Bacillus fordii Firmicutes Rare neg neg neg neg neg neg neg neg neg
Bacillus halotolerans Firmicutes Rare + + neg neg neg + neg neg +
Bacillus idriensis Firmicutes Rare + neg vr neg neg vr neg neg + neg
Bacillus infantis Firmicutes Rare +
Bacillus kwashiorkori Firmicutes Rare + + neg neg neg neg neg neg neg +
Bacillus licheniformis Firmicutes Minor + + vr neg neg + neg neg + +
Bacillus marasmi Firmicutes Rare + + neg + + + +
Bacillus massilioanorexius Firmicutes Rare + w
Bacillus massiliogabonensis Firmicutes Unlikely neg + neg neg neg + + neg + +
Bacillus massilionigeriensis Firmicutes Rare +
Bacillus mediterraneensis Firmicutes Rare + + + neg + neg neg neg + +
Bacillus methanolicus Firmicutes Non + neg neg
Bacillus mojavensis Firmicutes Rare + +
Bacillus mycoides Firmicutes Rare + d(+) neg neg neg neg neg neg + d(+)
Bacillus niameyensis Firmicutes Rare + neg neg neg neg + neg neg + neg
Bacillus pakistanensis Firmicutes Rare + neg neg neg neg neg neg neg + +
Bacillus phocaeensis Firmicutes Rare + neg neg neg neg neg neg neg neg +
Bacillus pseudofirmus Firmicutes Rare +
Bacillus pseudomycoides Firmicutes Unlikely +
Bacillus pumilus Firmicutes Rare + + neg neg neg neg neg neg + +
Bacillus rubiinfantis Firmicutes Rare + neg neg neg neg neg neg neg neg
Bacillus sinesaloumensis Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg
Bacillus siralis Firmicutes Rare + vr neg neg neg neg neg neg vr vr
Bacillus smithii Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Bacillus sonorensis Firmicutes Rare +
Bacillus subtilis Firmicutes Minor + + neg neg neg vr neg neg d(+) +
Bacillus testis Firmicutes Rare + + + +
Bacillus thuringiensis Firmicutes Rare + w neg neg neg neg neg neg + d(+)
Bacillus timonensis Firmicutes Rare neg
Bacillus tuaregi Firmicutes Rare + neg neg neg neg + neg neg neg neg
Bacillus vallismortis Firmicutes Rare + + neg neg neg neg neg neg + +
Bacillus velezensis Variant polyfermenticus Firmicutes Rare + + neg neg neg + neg neg neg +
Bacillus wiedmannii Firmicutes Rare + + d(neg) neg neg neg neg neg + +
Bacteroides acidifaciens Bacteroidetes Moderate neg
Bacteroides bouchesdurhonensis Bacteroidetes Moderate neg + +
Bacteroides caccae Bacteroidetes Widespread neg d
Bacteroides caecimuris Bacteroidetes Rare neg +
Bacteroides cellulosilyticus Bacteroidetes Moderate neg w
Bacteroides clarus Bacteroidetes Moderate neg neg
Bacteroides congonensis Bacteroidetes Moderate neg neg neg neg + neg + neg + neg
Bacteroides coprosuis Bacteroidetes Rare neg
Bacteroides cutis Bacteroidetes Moderate neg
Bacteroides eggerthii Bacteroidetes Widespread neg neg neg
Bacteroides faecalis Bacteroidetes Rare neg +
Bacteroides faecichinchillae Bacteroidetes Rare neg +
Bacteroides faecis Bacteroidetes Moderate neg neg
Bacteroides finegoldii Bacteroidetes Widespread neg +
Bacteroides fluxus Bacteroidetes Moderate neg +
Bacteroides fragilis Bacteroidetes Widespread neg neg neg
Bacteroides galacturonicus Bacteroidetes Rare neg neg
Bacteroides gallinarum Bacteroidetes Moderate neg neg
Bacteroides graminisolvens Bacteroidetes Rare neg +
Bacteroides helcogenes Bacteroidetes Rare neg +
Bacteroides heparinolyticus Bacteroidetes Rare neg +
Bacteroides ihuae Bacteroidetes Rare neg + neg neg neg + + neg + +
Bacteroides ilei Bacteroidetes Minor neg neg neg neg + neg neg neg neg neg
Bacteroides intestinalis Bacteroidetes Widespread neg neg
Bacteroides luhongzhouii Bacteroidetes Rare neg
Bacteroides luti Bacteroidetes Rare neg
Bacteroides mediterraneensis Bacteroidetes Moderate neg + + + +
Bacteroides ndongoniae Bacteroidetes Minor neg
Bacteroides neonati Bacteroidetes Minor neg neg
Bacteroides nordii Bacteroidetes Moderate neg neg
Bacteroides oleiciplenus Bacteroidetes Moderate neg +
Bacteroides ovatus Bacteroidetes Widespread neg +
Bacteroides pectinophilus Bacteroidetes Moderate neg +
Bacteroides propionicifaciens Bacteroidetes Rare neg
Bacteroides pyogenes Bacteroidetes Minor neg d
Bacteroides reticulotermitis Bacteroidetes Rare neg +
Bacteroides salyersiae Bacteroidetes Moderate neg neg
Bacteroides sp. Strain D8 Bacteroidetes Rare neg neg
Bacteroides stercorirosoris Bacteroidetes Moderate neg neg
Bacteroides stercoris Bacteroidetes Widespread neg neg
Bacteroides thetaiotaomicron Bacteroidetes Widespread neg +
Bacteroides timonensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg
Bacteroides togonis Bacteroidetes Minor neg + + +
Bacteroides uniformis Bacteroidetes Widespread neg +
Bacteroides xylanisolvens Bacteroidetes Widespread neg neg vr
Bacteroides zhangwenhongi Bacteroidetes Rare neg
Bacteroides zoogleoformans Bacteroidetes Rare neg +
Bariatricus massiliensis Firmicutes Minor +
Barnesiella intestinihominis Bacteroidetes Moderate neg neg
Barnesiella viscericola Bacteroidetes Rare neg neg
Bartonella vinsonii Proteobacteria Non neg
Bavariicoccus seileri Firmicutes Rare +
Bdellovibrio bacteriovorus Bdellovibrionota Moderate neg
Beduinella massiliensis Firmicutes Rare neg
Beduini massiliensis Firmicutes Rare neg
Beduinibacterium massiliense Firmicutes Rare +
Belnapia soli Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg
Berryella intestinalis Actinobacteria Rare +
Bhargavaea beijingensis Firmicutes Rare + neg neg +
Bhargavaea cecembensis Firmicutes Non + neg
Bifidobacterium adolescentis Actinobacteria Widespread + d neg neg d d neg neg neg neg d
Bifidobacterium aerophilum Actinobacteria Rare + + neg neg neg w neg neg neg w
Bifidobacterium angulatum Actinobacteria Moderate + vr neg neg neg vr neg neg neg neg vr
Bifidobacterium animalis Actinobacteria Moderate + neg neg neg neg + neg neg neg neg +
Bifidobacterium animalis subsp. lactis Actinobacteria Rare + neg neg + neg neg neg neg neg
Bifidobacterium asteroides Actinobacteria Rare + + +
Bifidobacterium avesanii Actinobacteria Rare + neg neg w neg neg neg neg neg
Bifidobacterium biavatii Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Bifidobacterium bifidum Actinobacteria Widespread + neg neg neg neg neg neg neg neg neg neg
Bifidobacterium boum Actinobacteria Rare + neg neg neg neg + neg neg neg neg
Bifidobacterium breve Actinobacteria Widespread + + neg neg neg + vr neg neg + +
Bifidobacterium callitrichidarum Actinobacteria Rare + + neg neg neg neg neg neg +
Bifidobacterium catenulatum Actinobacteria Moderate + vr vr neg d vr neg neg neg neg +
Bifidobacterium catenulatum subsp. kashiwanohense Actinobacteria Rare + +
Bifidobacterium choerinum Actinobacteria Rare + neg neg
Bifidobacterium coryneforme Actinobacteria Rare + d(+)
Bifidobacterium cuniculi Actinobacteria Rare + neg neg
Bifidobacterium dentium Actinobacteria Moderate + + vr vr neg + neg neg neg neg +
Bifidobacterium eulemuris Actinobacteria Rare + + neg w + + neg + w +
Bifidobacterium faecale Actinobacteria Rare + + + neg neg + neg neg neg +
Bifidobacterium gallicum Actinobacteria Rare + d neg neg neg d neg neg neg w
Bifidobacterium imperatoris Actinobacteria Rare + neg
Bifidobacterium indicum Actinobacteria Rare + + +
Bifidobacterium lemurum Actinobacteria Rare + + neg + + w neg neg neg +
Bifidobacterium longum subsp. infantis Actinobacteria Moderate + neg + neg neg + neg neg neg neg neg
Bifidobacterium longum subsp. longum Actinobacteria Widespread + neg neg neg neg + neg neg neg neg neg
Bifidobacterium longum subsp. suis Actinobacteria Rare + neg neg
Bifidobacterium merycicum Actinobacteria Rare + neg neg
Bifidobacterium minimum Actinobacteria Rare + neg
Bifidobacterium mongoliense Actinobacteria Unlikely + vr vr neg neg + neg neg neg vr
Bifidobacterium moukalabense Actinobacteria Rare + +
Bifidobacterium myosotis Actinobacteria Rare + neg neg neg neg neg neg d neg +
Bifidobacterium pseudocatenulatum Actinobacteria Widespread + vr d neg neg vr neg neg neg neg vr
Bifidobacterium pseudolongum Actinobacteria Minor + neg neg neg neg + neg neg neg neg
Bifidobacterium pseudolongum subsp. globosum Actinobacteria Rare + d
Bifidobacterium pullorum subsp. gallinarum Actinobacteria Rare + d(+) +
Bifidobacterium pullorum subsp. saeculare Actinobacteria Rare + d(neg)
Bifidobacterium ramosum Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Bifidobacterium reuteri Actinobacteria Rare + w w neg neg neg neg neg neg +
Bifidobacterium ruminantium Actinobacteria Minor + + neg neg neg + neg neg neg vr
Bifidobacterium saguini Actinobacteria Rare + + w neg neg w neg neg neg +
Bifidobacterium scardovii Actinobacteria Minor + + + neg d neg neg neg neg neg +
Bifidobacterium stellenboschense Actinobacteria Rare + + w neg neg + neg neg + +
Bifidobacterium subtile Actinobacteria Rare + + d
Bifidobacterium thermacidophilum Actinobacteria Rare + d(w) vr
Bifidobacterium thermophilum Actinobacteria Rare + neg neg neg neg d neg neg neg neg
Bifissio spartinae Bacteroidetes Rare neg
Bilophila wadsworthia Desulfobacterota Widespread neg
Bittarella massiliensis Firmicutes Moderate neg
Blastococcus massiliensis Actinobacteria Rare +
Blastomonas natatoria Proteobacteria Unlikely neg
Blautia brookingsii Firmicutes Rare +
Blautia caecimuris Firmicutes Rare + +
Blautia coccoides Firmicutes Minor + + + +
Blautia faecicola Firmicutes Rare + neg neg neg + neg neg neg +
Blautia faecis Firmicutes Rare + neg neg neg + neg neg neg neg neg
Blautia glucerasea Firmicutes Rare +
Blautia hansenii Firmicutes Moderate + neg
Blautia hominis Firmicutes Rare + + + neg + + + + neg +
Blautia hydrogenotrophica Firmicutes Moderate +
Blautia intestinalis Firmicutes Rare +
Blautia liquoris Firmicutes Rare +
Blautia luti Firmicutes Minor + + neg
Blautia marasmi Firmicutes Rare +
Blautia massiliensis Firmicutes Moderate neg + + + + +
Blautia obeum Firmicutes Widespread + + + + + vr
Blautia phocaeensis Firmicutes Rare +
Blautia producta Firmicutes Widespread + neg neg
Blautia provencensis Firmicutes Rare +
Blautia pseudococcoides Firmicutes Rare + + + +
Blautia schinkii Firmicutes Rare +
Blautia stercoris Firmicutes Minor + neg neg neg + neg neg neg neg neg
Blautia wexlerae Firmicutes Moderate +
Bordetella bronchiseptica Proteobacteria Non neg
Bordetella hinzii Proteobacteria Unlikely neg neg
Bordetella trematum Proteobacteria Non neg neg
Bosea massiliensis Proteobacteria Rare neg
Brachybacterium conglomeratum Actinobacteria Rare + d
Brachybacterium faecium Actinobacteria Unlikely + neg
Brachybacterium ginsengisoli Actinobacteria Unlikely +
Brachybacterium massiliense Actinobacteria Rare + + + neg + neg neg + neg neg
Brachybacterium muris Actinobacteria Rare +
Brachybacterium paraconglomeratum Actinobacteria Rare + +
Brachymonas chironomi Proteobacteria Unlikely neg
Brachyspira aalborgi Spirochaetes Rare neg
Brachyspira hyodysenteriae Spirochaetes Rare neg
Brachyspira pilosicoli Spirochaetes Unlikely neg +
Bradyrhizobium denitrificans Proteobacteria Rare neg
Bradyrhizobium elkanii Proteobacteria Rare neg
Bradyrhizobium ganzhouense Proteobacteria Unlikely neg
Bradyrhizobium icense Proteobacteria Unlikely neg
Bradyrhizobium japonicum Proteobacteria Rare neg
Bradyrhizobium neotropicale Proteobacteria Rare neg
Brassicibacter mesophilus Firmicutes Rare neg
Brenneria populi Li et al. 2015 Proteobacteria Rare neg + d neg d + neg neg + +
Brevibacillus agri Firmicutes Unlikely + neg neg neg neg neg neg neg w(neg) neg
Brevibacillus borstelensis Firmicutes Rare + neg neg neg neg neg neg neg w(neg) neg
Brevibacillus brevis Firmicutes Rare vr + neg
Brevibacillus centrosporus Firmicutes Unlikely + neg neg neg neg neg neg neg w(neg) neg
Brevibacillus choshinensis Firmicutes Rare +
Brevibacillus formosus Firmicutes Unlikely + + neg
Brevibacillus laterosporus Firmicutes Rare vr +
Brevibacillus massiliensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Brevibacillus parabrevis Firmicutes Unlikely vr neg
Brevibacillus thermoruber Firmicutes Non +
Brevibacterium aurantiacum Actinobacteria Unlikely + +
Brevibacterium casei Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Brevibacterium celere Actinobacteria Rare +
Brevibacterium epidermidis Actinobacteria Rare +
Brevibacterium ihuae Actinobacteria Rare +
Brevibacterium iodinum Actinobacteria Unlikely vr neg neg neg neg neg neg neg neg neg
Brevibacterium linens Actinobacteria Unlikely + neg neg neg neg neg neg neg neg neg
Brevibacterium luteolum Actinobacteria Rare +
Brevibacterium mcbrellneri Actinobacteria Unlikely +
Brevibacterium otitidis Actinobacteria Non +
Brevibacterium paucivorans Actinobacteria Rare +
Brevibacterium pityocampae Actinobacteria Rare +
Brevibacterium ravenspurgense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Brevibacterium samyangense Actinobacteria Rare +
Brevibacterium sanguinis Actinobacteria Rare +
Brevibacterium senegalense Actinobacteria Rare +
Brevundimonas aurantiaca Proteobacteria Rare neg
Brevundimonas bacteroides Proteobacteria Rare neg
Brevundimonas bullata Proteobacteria Rare neg
Brevundimonas diminuta Proteobacteria Rare neg neg
Brevundimonas intermedia Proteobacteria Rare neg
Brevundimonas nasdae Proteobacteria Rare neg
Brevundimonas terrae Proteobacteria Rare neg
Brevundimonas vesicularis Proteobacteria Rare neg neg
Brochothrix thermosphacta Firmicutes Unlikely + vr neg neg neg neg + neg neg + +
Brucella anthropi Proteobacteria Unlikely neg +
Brucella cytisi Proteobacteria Rare neg
Brucella melitensis Proteobacteria Non neg
Brucella tritici Proteobacteria Unlikely neg +
Buchnera aphidicola Proteobacteria Non neg
Bulleidia extructa Firmicutes Rare +
Burkholderia arboris Proteobacteria Rare neg
Burkholderia cepacia Proteobacteria Rare neg + neg +
Burkholderia gladioli Proteobacteria Unlikely neg + neg neg
Burkholderia mallei Proteobacteria Unlikely neg
Burkholderia multivorans Proteobacteria Rare neg + neg +
Burkholderia pseudomallei Proteobacteria Unlikely neg
Burkholderia pyrrocinia Proteobacteria Unlikely neg
Burkholderia vietnamiensis Proteobacteria Rare neg + neg
Buttiauxella agrestis Proteobacteria Rare neg + neg +
Butyribacter intestini Firmicutes Rare + neg neg neg neg + neg neg neg neg
Butyricicoccus faecihominis Firmicutes Rare + neg
Butyricicoccus porcorum Firmicutes Rare + neg neg
Butyricicoccus pullicaecorum Firmicutes Minor + +
Butyricimonas faecalis Bacteroidetes Rare neg neg neg neg neg neg +
Butyricimonas faecihominis Bacteroidetes Rare neg neg neg neg neg neg
Butyricimonas paravirosa Bacteroidetes Rare neg neg neg neg neg neg
Butyricimonas phoceensis Bacteroidetes Rare neg
Butyricimonas synergistica Bacteroidetes Minor neg neg neg neg neg neg
Butyricimonas virosa Bacteroidetes Moderate neg neg neg neg neg neg
Butyrivibrio crossotus Firmicutes Widespread neg neg
Butyrivibrio fibrisolvens Firmicutes Minor neg +
Butyrivibrio hungatei Firmicutes Unlikely neg
Butyrivibrio proteoclasticus Firmicutes Rare +
Caballeronia novacaledonica Proteobacteria Rare neg
Caecibacter massiliensis Firmicutes Rare
Caldibacillus thermoamylovorans Firmicutes Unlikely + + + neg neg + neg neg + +
Caldicellulosiruptor diazotrophicus Firmicutes Non +
Caldicoprobacter faecalis Firmicutes Unlikely neg +
Caloranaerobacter azorensis Firmicutes Non neg
Campylobacter avium Proteobacteria Non neg
Campylobacter coli Proteobacteria Unlikely neg
Campylobacter concisus Proteobacteria Minor neg
Campylobacter curvus Proteobacteria Rare neg
Campylobacter faecalis Proteobacteria Rare neg
Campylobacter fetus subsp. fetus Proteobacteria Rare neg
Campylobacter gracilis Proteobacteria Minor neg
Campylobacter hominis Proteobacteria Minor neg
Campylobacter hyointestinalis subsp. hyointestinalis Proteobacteria Unlikely neg
Campylobacter jejuni subsp. doylei Proteobacteria Rare neg
Campylobacter jejuni subsp. jejuni Proteobacteria Unlikely neg
Campylobacter lanienae Proteobacteria Rare neg
Campylobacter lari subsp. concheus Proteobacteria Rare neg
Campylobacter lari subsp. lari Proteobacteria Rare neg
Campylobacter mucosalis Proteobacteria Rare neg
Campylobacter peloridis Proteobacteria Rare neg
Campylobacter rectus Proteobacteria Rare neg
Campylobacter showae Proteobacteria Rare neg
Campylobacter sputorum Proteobacteria Non neg
Campylobacter troglodytis Proteobacteria Rare neg
Campylobacter upsaliensis Proteobacteria Rare neg
Campylobacter ureolyticus Proteobacteria Minor neg
Candidatus Babela massiliensis Candidatus Dependentiae Unlikely neg
Candidatus Dorea massiliensis Firmicutes Rare +
Candidatus Stoquefichus massiliensis Firmicutes Rare +
Capnocytophaga canimorsus Bacteroidetes Unlikely neg neg
Capnocytophaga gingivalis Bacteroidetes Non neg
Capnocytophaga granulosa Bacteroidetes Rare neg
Capnocytophaga leadbetteri Bacteroidetes Rare neg
Capnocytophaga ochracea Bacteroidetes Rare neg neg neg
Capnocytophaga sputigena Bacteroidetes Rare neg neg
Capnocytophaga stomatis Bacteroidetes Unlikely neg
Caproicibacter fermentans Firmicutes Rare neg
Cardiobacterium hominis Proteobacteria Rare neg neg
Cardiobacterium valvarum Proteobacteria Rare neg
Carnobacterium divergens Firmicutes Non + + neg neg neg neg neg + +
Carnobacterium inhibens Firmicutes Rare + + neg neg neg neg neg neg + +
Carnobacterium maltaromaticum Firmicutes Unlikely + + neg neg neg w + neg + +
Carnobacterium mobile Firmicutes Non + neg d neg neg neg neg + +
Casaltella massiliensis Firmicutes Rare neg
Catenibacillus scindens Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Catenibacterium mitsuokai Firmicutes Moderate + +
Catenulispora acidiphila Actinobacteria Unlikely +
Catonella morbi Firmicutes Rare neg d(neg)
Caulobacter vibrioides Proteobacteria Unlikely neg neg neg neg
Cedecea davisae Proteobacteria Rare neg neg d(neg) +
Cedecea lapagei Proteobacteria Rare neg neg +
Cedecea neteri Proteobacteria Rare neg neg +
Cellulomonas carbonis Actinobacteria Unlikely + +
Cellulomonas composti Actinobacteria Rare + neg neg
Cellulomonas denverensis Actinobacteria Rare + +
Cellulomonas fimi Actinobacteria Rare +
Cellulomonas flavigena Actinobacteria Rare +
Cellulomonas hominis Actinobacteria Rare + + neg + + +
Cellulomonas massiliensis Actinobacteria Rare +
Cellulomonas parahominis Actinobacteria Rare +
Cellulomonas timonensis Actinobacteria Rare + + neg neg neg neg neg neg neg +
Cellulosilyticum lentocellum Firmicutes Rare neg
Cellulosilyticum ruminicola Firmicutes Rare neg neg
Cellulosimicrobium cellulans Actinobacteria Rare + +
Centipeda periodontii Firmicutes Rare neg d
Cerasibacillus quisquiliarum Firmicutes Non + neg neg neg + neg neg neg neg neg
Cetobacterium somerae Fusobacteria Rare neg
Chelatococcus asaccharovorans Proteobacteria Unlikely neg
Chitinophaga agri Bacteroidetes Unlikely neg
Chlamydia trachomatis Chlamydiae Non neg
Chloracidobacterium thermophilum Acidobacteria Non neg
Christensenella hongkongensis Firmicutes Minor + neg
Christensenella massiliensis Firmicutes Rare neg
Christensenella minuta Firmicutes Minor neg +
Christensenella timonensis Firmicutes Minor neg
Chromobacterium violaceum Proteobacteria Unlikely neg + neg + neg
Chromohalobacter japonicus Proteobacteria Unlikely neg neg
Chromohalobacter salexigens Proteobacteria Unlikely neg
Chryseobacterium gallinarum Bacteroidetes Unlikely neg neg neg
Chryseobacterium gleum Bacteroidetes Unlikely neg neg neg neg
Chryseobacterium hominis Bacteroidetes Rare neg
Chryseobacterium indologenes Bacteroidetes Rare neg d neg
Chryseobacterium oranimense Bacteroidetes Rare neg
Chryseobacterium taklimakanense Bacteroidetes Rare neg
Chryseobacterium viscerum Bacteroidetes Non neg
Chryseomicrobium amylolyticum Firmicutes Rare + neg
Citrobacter amalonaticus Proteobacteria Rare neg + neg neg
Citrobacter braakii Proteobacteria Rare neg + d neg
Citrobacter europaeus Proteobacteria Rare neg + + + + neg neg neg + +
Citrobacter farmeri Proteobacteria Minor neg + + neg
Citrobacter freundii Proteobacteria Minor neg + neg neg
Citrobacter gillenii Proteobacteria Rare neg +
Citrobacter intermedius Proteobacteria Unlikely neg
Citrobacter koseri Proteobacteria Minor neg + d neg
Citrobacter murliniae Proteobacteria Rare neg + neg neg
Citrobacter pasteurii Proteobacteria Rare neg vr + + + neg + neg
Citrobacter portucalensis Proteobacteria Rare neg + + + + neg neg neg + +
Citrobacter rodentium Proteobacteria Rare neg neg +
Citrobacter sedlakii Proteobacteria Rare neg d(+) neg neg neg
Citrobacter werkmanii Proteobacteria Rare neg neg neg
Citrobacter youngae Proteobacteria Rare neg neg + neg neg
Citroniella saccharovorans Firmicutes Rare +
Cloacibacillus evryensis Synergistetes Minor neg
Cloacibacillus porcorum Synergistetes Rare neg
Cloacibacterium normanense Bacteroidetes Rare neg
Clostridioides difficile Firmicutes Widespread + vr
Clostridioides mangenotii Firmicutes Rare +
Clostridium acetobutylicum Firmicutes Rare + + +
Clostridium amazonense Firmicutes Rare +
Clostridium amazonitimonense Firmicutes Rare +
Clostridium aminobutyricum Firmicutes Rare +
Clostridium aminophilum Firmicutes Rare +
Clostridium amylolyticum Firmicutes Rare +
Clostridium anorexicamassiliense Firmicutes Rare +
Clostridium argentinense Firmicutes Rare +
Clostridium aurantibutyricum Firmicutes Rare + +
Clostridium autoethanogenum Firmicutes Rare +
Clostridium baratii Firmicutes Minor + +
Clostridium beijerinckii Firmicutes Minor +
Clostridium boliviensis Firmicutes Rare +
Clostridium bornimense Firmicutes Rare vr
Clostridium botulinum Gp I Firmicutes Unlikely +
Clostridium botulinum Gp II Firmicutes Unlikely +
Clostridium botulinum Gp III Firmicutes Unlikely +
Clostridium botulinum Gp IV Firmicutes Unlikely +
Clostridium budayi Firmicutes Rare + neg
Clostridium butyricum Firmicutes Widespread +
Clostridium cadaveris Firmicutes Rare +
Clostridium cagae Firmicutes Rare + + neg neg + neg neg neg neg neg
Clostridium carboxidivorans Firmicutes Rare +
Clostridium carnis Firmicutes Rare +
Clostridium celatum Firmicutes Minor +
Clostridium cellulosi Firmicutes Unlikely neg +
Clostridium cellulovorans Firmicutes Rare neg
Clostridium chartatabidum Firmicutes Rare + +
Clostridium chauvoei Firmicutes Rare + +
Clostridium cochlearium Firmicutes Minor +
Clostridium cocleatum Firmicutes Rare + neg neg
Clostridium colicanis Firmicutes Rare neg w
Clostridium colinum Firmicutes Rare +
Clostridium combesii Firmicutes Rare + neg
Clostridium culturomicium Firmicutes Rare + +
Clostridium dakarense Firmicutes Rare +
Clostridium diolis Firmicutes Rare + +
Clostridium disporicum Firmicutes Minor + +
Clostridium drakei Firmicutes Unlikely +
Clostridium estertheticum Firmicutes Unlikely + +
Clostridium fallax Firmicutes Rare +
Clostridium felsineum Firmicutes Rare +
Clostridium fessum Firmicutes Rare + neg
Clostridium gasigenes Firmicutes Unlikely + +
Clostridium haemolyticum Firmicutes Rare +
Clostridium herbivorans Firmicutes Rare +
Clostridium hylemonae Firmicutes Minor + neg
Clostridium ihumii Firmicutes Rare +
Clostridium innocuum Firmicutes Widespread + +
Clostridium intestinale Firmicutes Rare +
Clostridium isatidis Firmicutes Unlikely + +
Clostridium jeddahense Firmicutes Rare +
Clostridium jeddahitimonense Firmicutes Rare + +
Clostridium kluyveri Firmicutes Unlikely vr
Clostridium leptum Firmicutes Widespread +
Clostridium magnum Firmicutes Rare neg
Clostridium malenominatum Firmicutes Rare +
Clostridium manihotivorum Firmicutes Rare +
Clostridium massiliamazoniense Firmicutes Rare +
Clostridium massiliodielmoense Firmicutes Rare +
Clostridium mediterraneense Firmicutes Rare +
Clostridium merdae Firmicutes Rare +
Clostridium metallolevans Firmicutes Rare +
Clostridium methoxybenzovorans Firmicutes Rare +
Clostridium methylpentosum Firmicutes Moderate +
Clostridium minihomine Firmicutes Rare +
Clostridium moniliforme Firmicutes Rare + neg
Clostridium neonatale Firmicutes Minor +
Clostridium niameyense Firmicutes Rare +
Clostridium nigeriense Firmicutes Rare +
Clostridium nitritogenes Firmicutes Rare + d(+)
Clostridium novyi A Firmicutes Rare +
Clostridium oceanicum Firmicutes Rare + neg
Clostridium paraputrificum Firmicutes Moderate + neg
Clostridium pasteurianum Firmicutes Rare + +
Clostridium perfringens Firmicutes Widespread + neg
Clostridium phoceensis Firmicutes Rare neg
Clostridium polyendosporum Firmicutes Rare +
Clostridium polynesiense Firmicutes Rare + + neg neg neg neg neg neg + +
Clostridium polysaccharolyticum Firmicutes Rare neg neg
Clostridium populeti Firmicutes Rare neg
Clostridium punense Firmicutes Rare +
Clostridium putrefaciens Firmicutes Minor +
Clostridium rectalis Firmicutes Rare + + neg neg + + + neg + +
Clostridium roseum Firmicutes Rare + + +
Clostridium saccharobutylicum Firmicutes Unlikely +
Clostridium saccharoperbutylacetonicum Firmicutes Rare + + +
Clostridium sardiniense Firmicutes Rare + +
Clostridium sartagoforme Firmicutes Minor +
Clostridium saudiense Firmicutes Minor +
Clostridium scatologenes Firmicutes Rare +
Clostridium schirmacherense Firmicutes Unlikely +
Clostridium scindens Firmicutes Moderate +
Clostridium senegalense Firmicutes Rare +
Clostridium septicum Firmicutes Rare + neg
Clostridium sporogenes Firmicutes Minor + neg
Clostridium sporosphaeroides Firmicutes Minor +
Clostridium subterminale Firmicutes Rare + neg
Clostridium sulfidigenes Firmicutes Rare +
Clostridium symbiosum Firmicutes Widespread neg neg
Clostridium taeniosporum Firmicutes Unlikely +
Clostridium tertium Firmicutes Moderate + neg neg neg neg neg neg neg neg + +
Clostridium tetani Firmicutes Unlikely + neg
Clostridium thermarum Firmicutes Unlikely +
Clostridium thermobutyricum Firmicutes Rare vr
Clostridium thiosulfatireducens Firmicutes Rare +
Clostridium transplantifaecale Firmicutes Rare + + + neg + + + + + +
Clostridium tyrobutyricum Firmicutes Rare + neg
Clostridium vincentii Firmicutes Rare +
Clostridium viride Firmicutes Rare +
Colibacter massiliensis Firmicutes Rare +
Colidextribacter massiliensis Firmicutes Rare neg
Collinsella aerofaciens Actinobacteria Widespread + neg w(neg)
Collinsella bouchesdurhonensis Actinobacteria Minor + + neg neg + neg neg +
Collinsella ihumii Actinobacteria Rare +
Collinsella intestinalis Actinobacteria Moderate + +
Collinsella massiliensis Actinobacteria Rare + neg neg neg + neg neg neg neg
Collinsella phocaeensis Actinobacteria Rare neg
Collinsella provencensis Actinobacteria Rare +
Collinsella stercoris Actinobacteria Minor + +
Collinsella tanakaei Actinobacteria Minor + +
Collinsella vaginalis Actinobacteria Rare +
Comamonas aquatica Proteobacteria Non neg
Comamonas denitrificans Proteobacteria Rare neg
Comamonas kerstersii Proteobacteria Rare neg
Comamonas koreensis Proteobacteria Unlikely neg
Comamonas terrigena Proteobacteria Unlikely neg
Comamonas testosteroni Proteobacteria Rare neg
Comamonas thiooxydans Proteobacteria Rare neg
Companilactobacillus alimentarius Firmicutes Rare + + + vr neg neg neg neg neg + +
Companilactobacillus farciminis Firmicutes Rare + + neg neg neg + neg neg + +
Companilactobacillus mindensis Firmicutes Unlikely + neg + +
Companilactobacillus versmoldensis Firmicutes Unlikely + neg
Conexibacter woesei Actinobacteria Rare +
Congobacterium massiliense Firmicutes Rare +
Coprobacillus cateniformis Firmicutes Moderate + +
Coprobacter fastidiosus Bacteroidetes Moderate neg
Coprobacter secundus Bacteroidetes Moderate neg w
Coprobacter secundus subsp. similis Bacteroidetes Rare neg neg
Coprococcus catus Firmicutes Widespread + neg
Coprococcus comes Firmicutes Widespread + d(neg)
Coprococcus eutactus Firmicutes Widespread + +
Coprococcus phoceensis Firmicutes Rare vr neg neg neg + neg neg neg neg neg
Coraliomargarita akajimensis Verrucomicrobia Non neg neg neg neg + neg neg neg neg neg
Coriobacterium glomerans Actinobacteria Unlikely + +
Corynebacterium accolens Actinobacteria Rare + neg
Corynebacterium afermentans Actinobacteria Rare + neg
Corynebacterium ammoniagenes Actinobacteria Rare +
Corynebacterium amycolatum Actinobacteria Rare + neg neg neg neg neg neg neg neg neg neg
Corynebacterium appendicis Actinobacteria Rare + neg
Corynebacterium argentoratense Actinobacteria Rare +
Corynebacterium aurimucosum Actinobacteria Rare + neg neg
Corynebacterium bouchesdurhonense Actinobacteria Rare +
Corynebacterium bovis Actinobacteria Rare + neg
Corynebacterium callunae Actinobacteria Unlikely + +
Corynebacterium casei Actinobacteria Rare + neg neg neg d(neg) neg neg neg neg
Corynebacterium coyleae Actinobacteria Rare + neg neg neg + neg neg neg neg neg
Corynebacterium cystitidis Actinobacteria Rare + neg
Corynebacterium diphtheriae Actinobacteria Non vr
Corynebacterium doosanense Actinobacteria Rare +
Corynebacterium durum Actinobacteria Minor +
Corynebacterium efficiens Actinobacteria Rare + neg
Corynebacterium falsenii Actinobacteria Rare + neg neg neg + neg neg neg neg neg
Corynebacterium flavescens Actinobacteria Rare vr neg
Corynebacterium freneyi Actinobacteria Rare + d(neg) d(+) neg d(+) neg neg neg neg neg
Corynebacterium genitalium Actinobacteria Rare +
Corynebacterium glaucum Actinobacteria Rare + neg
Corynebacterium glucuronolyticum Actinobacteria Rare +
Corynebacterium glutamicum Actinobacteria Rare + neg
Corynebacterium ihumii Actinobacteria Rare + + neg neg + + + + +
Corynebacterium jeddahense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Corynebacterium jeikeium Actinobacteria Rare + neg
Corynebacterium kroppenstedtii Actinobacteria Minor + neg
Corynebacterium lipophiloflavum Actinobacteria Rare +
Corynebacterium lujinxingii Actinobacteria Rare +
Corynebacterium matruchotii Actinobacteria Unlikely +
Corynebacterium minutissimum Actinobacteria Rare + + neg
Corynebacterium mucifaciens Actinobacteria Rare + neg neg neg neg neg neg neg
Corynebacterium neomassiliense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Corynebacterium otitidis Actinobacteria Rare +
Corynebacterium pacaense Actinobacteria Rare + w neg neg neg neg neg neg neg +
Corynebacterium propinquum Actinobacteria Rare +
Corynebacterium provencense Actinobacteria Rare +
Corynebacterium pseudodiphtheriticum Actinobacteria Rare +
Corynebacterium pseudogenitalium Actinobacteria Rare +
Corynebacterium pyruviciproducens Actinobacteria Rare +
Corynebacterium riegelii Actinobacteria Rare + neg neg neg + neg neg neg neg
Corynebacterium sanguinis Actinobacteria Rare +
Corynebacterium simulans Actinobacteria Rare + neg neg neg neg neg neg neg vr neg
Corynebacterium singulare Actinobacteria Rare +
Corynebacterium stationis Actinobacteria Rare + neg
Corynebacterium striatum Actinobacteria Rare + neg neg
Corynebacterium suicordis Actinobacteria Rare + neg neg neg neg neg neg neg neg
Corynebacterium sundsvallense Actinobacteria Rare + neg neg neg
Corynebacterium tuberculostearicum Actinobacteria Rare + vr + neg vr
Corynebacterium ulcerans Actinobacteria Rare +
Corynebacterium urealyticum Actinobacteria Rare +
Corynebacterium ureicelerivorans Actinobacteria Rare +
Corynebacterium urinapleomorphum Actinobacteria Rare +
Corynebacterium variabile Actinobacteria Unlikely + neg neg neg neg neg neg neg neg
Corynebacterium wankanglinii Actinobacteria Rare +
Corynebacterium xerosis Actinobacteria Rare + neg neg neg + neg neg neg d(neg)
Crassaminicella thermophila Firmicutes Unlikely +
Criibacterium bergeronii Firmicutes Rare vr
Cronobacter condimenti Proteobacteria Unlikely neg + + + +
Cronobacter muytjensii Proteobacteria Rare neg
Cronobacter sakazakii Proteobacteria Minor neg neg + +
Cronobacter turicensis Proteobacteria Rare neg
Cruoricaptor ignavus Bacteroidetes Rare neg
Cryptobacterium curtum Actinobacteria Minor +
Culturomica massiliensis Bacteroidetes Rare neg
Cupriavidus metallidurans Proteobacteria Unlikely neg neg neg
Curtobacterium flaccumfaciens Actinobacteria Unlikely +
Cutibacterium acnes Actinobacteria Moderate + neg
Cutibacterium acnes subsp. defendens Actinobacteria Rare +
Cutibacterium avidum Actinobacteria Rare + neg neg neg
Cutibacterium granulosum Actinobacteria Minor +
Cytophaga hutchinsonii Bacteroidetes Rare neg
Dakarella massiliensis Proteobacteria Rare neg +
Dakotella fusiforme Firmicutes Rare +
Dehalobacter restrictus Firmicutes Non neg
Dehalobacterium formicoaceticum Firmicutes Unlikely +
Dehalococcoides mccartyi Chloroflexi Unlikely unk
Deinococcus aquaticus Deinococcus-Thermus Unlikely neg
Deinococcus caeni Deinococcus-Thermus Unlikely neg
Deinococcus geothermalis Deinococcus-Thermus Non +
Deinococcus proteolyticus Deinococcus-Thermus Unlikely +
Deinococcus reticulitermitis Deinococcus-Thermus Unlikely neg
Deinococcus wulumuqiensis Deinococcus-Thermus Unlikely +
Delftia acidovorans Proteobacteria Rare neg
Delftia lacustris Proteobacteria Unlikely neg
Delftia tsuruhatensis Proteobacteria Rare neg
Dellaglioa algida Firmicutes Rare + + neg neg neg neg neg neg + +
Denitrobacterium detoxificans Actinobacteria Rare +
Dermabacter hominis Actinobacteria Rare + vr neg neg neg vr neg neg neg + vr
Dermacoccus barathri Actinobacteria Non + neg neg
Dermacoccus nishinomiyaensis Actinobacteria Rare +
Desemzia incerta Firmicutes Rare +
Desnuesiella massiliensis Firmicutes Rare +
Desulfitobacterium dichloroeliminans Firmicutes Unlikely +
Desulfitobacterium hafniense Firmicutes Minor neg neg
Desulfococcus multivorans Proteobacteria Rare neg
Desulfocurvibacter africanus Proteobacteria Unlikely neg
Desulfofarcimen acetoxidans Firmicutes Unlikely neg
Desulfomicrobium baculatum Proteobacteria Unlikely neg
Desulfomicrobium orale Proteobacteria Unlikely neg
Desulforamulus reducens Firmicutes Unlikely +
Desulforudis audaxviator Firmicutes Unlikely +
Desulfoscipio gibsoniae Firmicutes Rare neg
Desulfosporosinus youngiae Firmicutes Rare neg
Desulfotomaculum ruminis Firmicutes Unlikely +
Desulfovibrio desulfuricans Proteobacteria Minor neg
Desulfovibrio diazotrophicus Proteobacteria Rare neg
Desulfovibrio fairfieldensis Proteobacteria Minor neg
Desulfovibrio intestinalis Proteobacteria Rare neg
Desulfovibrio legallii Proteobacteria Rare +
Desulfovibrio longreachensis Proteobacteria Rare neg
Desulfovibrio piger Proteobacteria Moderate neg
Desulfovibrio trichonymphae Proteobacteria Non unk
Desulfovibrio vulgaris Proteobacteria Rare neg
Desulfurispirillum indicum Chrysiogenetes Unlikely neg
Desulfurobacterium thermolithotrophum Aquificae Non neg
Devosia chinhatensis Proteobacteria Rare neg
Devosia limi Proteobacteria Unlikely neg
Devosia riboflavina Proteobacteria Unlikely neg
Dialister hominis Firmicutes Rare neg
Dialister invisus Firmicutes Moderate neg neg
Dialister massiliensis Firmicutes Rare neg
Dialister micraerophilus Firmicutes Rare neg
Dialister pneumosintes Firmicutes Minor neg
Dialister propionicifaciens Firmicutes Rare neg
Dialister succinatiphilus Firmicutes Minor neg
Dielma fastidiosa Firmicutes Minor neg
Dietzia cercidiphylli Actinobacteria Unlikely +
Dietzia cinnamea Actinobacteria Rare + neg neg
Dietzia kunjamensis Actinobacteria Unlikely + neg
Dietzia maris Actinobacteria Rare + neg neg
Dietzia natronolimnaea Actinobacteria Rare +
Dolosigranulum pigrum Firmicutes Unlikely + d
Dorea faecis Firmicutes Minor
Dorea formicigenerans Firmicutes Widespread + neg
Dorea hylemonae Firmicutes Rare
Dorea longicatena Firmicutes Widespread + + neg neg neg neg neg neg neg +
Dorea phocaeensis Firmicutes Rare neg neg neg neg d neg neg neg neg neg
Dorea scindens Firmicutes Rare
Drancourtella massiliensis Firmicutes Rare + + +
Dubosiella newyorkensis Firmicutes Rare +
Duncaniella dubosii Bacteroidetes Unlikely neg neg
Duncaniella muris Bacteroidetes Rare neg neg
Duodenibacillus massiliensis Proteobacteria Minor +
Dyadobacter beijingensis Bacteroidetes Unlikely neg
Dyadobacter fermentans Bacteroidetes Unlikely neg
Dysgonomonas capnocytophagoides Bacteroidetes Rare neg
Dysgonomonas gadei Bacteroidetes Rare neg +
Dysgonomonas massiliensis Bacteroidetes Rare neg + + + +
Dysgonomonas mossii Bacteroidetes Rare neg +
Dysosmobacter welbionis Firmicutes Moderate neg neg neg neg neg neg neg neg neg neg
Edwardsiella tarda Proteobacteria Minor neg neg neg
Eggerthella guodeyinii Actinobacteria Rare +
Eggerthella lenta Actinobacteria Widespread + neg
Eggerthella sinensis Actinobacteria Rare +
Eggerthella timonensis Actinobacteria Rare + + + + + + +
Eggerthia catenaformis Firmicutes Minor + d d +
Eikenella corrodens Proteobacteria Rare neg
Eisenbergiella massiliensis Firmicutes Moderate neg
Eisenbergiella tayi Firmicutes Moderate neg neg
Elizabethkingia meningoseptica Bacteroidetes Unlikely neg neg
Elizabethkingia miricola Bacteroidetes Non neg neg
Ellagibacter isourolithinifaciens Actinobacteria Rare +
Elusimicrobium minutum Elusimicrobia Unlikely neg neg w w neg w neg + neg
Emergencia timonensis Firmicutes Minor +
Empedobacter brevis Bacteroidetes Rare neg neg neg
Empedobacter falsenii Bacteroidetes Rare neg neg neg neg neg neg neg neg neg
Enhydrobacter aerosaccus Proteobacteria Rare neg
Enorma massiliensis Actinobacteria Minor +
Enorma phocaeensis Actinobacteria Rare neg
Enorma timonensis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Ensifer adhaerens Proteobacteria Unlikely neg
Enterobacter asburiae Proteobacteria Minor neg neg + +
Enterobacter cancerogenus Proteobacteria Minor neg neg +
Enterobacter cloacae Proteobacteria Moderate neg neg
Enterobacter cloacae subsp. dissolvens Proteobacteria Rare neg +
Enterobacter himalayensis Proteobacteria Minor
Enterobacter hormaechei subsp. hormaechei Proteobacteria Minor neg neg +
Enterobacter hormaechei subsp. steigerwaltii Proteobacteria Rare neg neg +
Enterobacter hormaechei subsp. xiangfangensis Proteobacteria Rare neg + neg neg neg + neg neg + +
Enterobacter kobei Proteobacteria Rare neg + + d w +
Enterobacter ludwigii Proteobacteria Rare neg +
Enterobacter massiliensis Proteobacteria Rare neg + neg neg neg neg + neg +
Enterobacter mori Proteobacteria Rare neg
Enterobacter roggenkampii Proteobacteria Rare neg
Enterobacter soli Proteobacteria Rare neg
Enterobacter timonensis Proteobacteria Rare neg
Enterocloster aldenensis Firmicutes Minor + vr
Enterocloster asparagiformis Firmicutes Moderate +
Enterocloster bolteae Firmicutes Widespread + neg
Enterocloster citroniae Firmicutes Moderate + neg
Enterocloster clostridioformis Firmicutes Widespread + d(neg)
Enterocloster lavalensis Firmicutes Minor + +
Enterococcus asini Firmicutes Rare + + neg neg neg d vr neg neg + +
Enterococcus avium Firmicutes Minor + + d + vr + + d neg + +
Enterococcus burkinafasonensis Firmicutes Rare + + neg neg neg neg neg neg + +
Enterococcus caccae Firmicutes Rare + + + neg neg + + d neg + +
Enterococcus canintestini Firmicutes Rare + + neg d(+) neg + d(neg) neg + +
Enterococcus canis Firmicutes Rare + + + + neg d neg +
Enterococcus casseliflavus Firmicutes Moderate + + neg vr vr + + neg neg + +
Enterococcus cecorum Firmicutes Rare + + neg neg neg + + neg neg + +
Enterococcus columbae Firmicutes Rare + + neg d neg + neg neg + +
Enterococcus devriesei Firmicutes Moderate + + d neg neg neg neg neg + +
Enterococcus diestrammenae Firmicutes Rare + + neg + + + neg + + +
Enterococcus dispar Firmicutes Rare + + neg neg neg neg + neg neg + +
Enterococcus durans Firmicutes Moderate + + d(+) d(+) neg neg + neg neg + +
Enterococcus eurekensis Firmicutes Rare + d + +
Enterococcus faecalis Firmicutes Widespread + + vr neg neg neg vr vr neg + +
Enterococcus faecium Firmicutes Widespread + + + neg neg + + vr neg + +
Enterococcus gallinarum Firmicutes Rare + + neg neg neg neg + neg neg + +
Enterococcus gilvus Firmicutes Rare + neg +
Enterococcus haemoperoxidus Firmicutes Rare + + neg neg neg + neg +
Enterococcus hermanniensis Firmicutes Rare + + neg neg neg +
Enterococcus hirae Firmicutes Minor + + neg neg neg neg + + neg + +
Enterococcus italicus Firmicutes Rare + d neg neg neg w neg neg + +
Enterococcus lactis Firmicutes Rare + + neg neg + neg + +
Enterococcus malodoratus Firmicutes Rare + + + + neg neg + neg + +
Enterococcus massiliensis Firmicutes Rare + +
Enterococcus mediterraneensis Firmicutes Rare + + + neg neg neg neg neg + +
Enterococcus moraviensis Firmicutes Rare + + neg neg neg + neg +
Enterococcus mundtii Firmicutes Rare + + neg neg neg neg + d(+) neg + +
Enterococcus pallens Firmicutes Rare + neg neg +
Enterococcus phoeniculicola Firmicutes Rare + + + vr neg vr vr neg neg + +
Enterococcus pseudoavium Firmicutes Rare + + neg + neg + + neg +
Enterococcus raffinosus Firmicutes Rare + d + +
Enterococcus saccharolyticus Firmicutes Rare + + neg + neg + neg neg + +
Enterococcus saigonensis Firmicutes Unlikely + + neg + neg neg neg neg + +
Enterococcus sulfureus Firmicutes Rare + + + + + +
Enterococcus thailandicus Firmicutes Rare + + + neg neg neg + neg + +
Enterococcus timonensis Firmicutes Rare + neg neg neg neg neg neg neg + +
Enterococcus villorum Firmicutes Rare + + neg neg neg neg neg neg + +
Enteroscipio rubneri Actinobacteria Rare + neg
Enterovibrio nigricans Proteobacteria Unlikely neg neg
Ereboglobus luteus Verrucomicrobia Unlikely neg
Erwinia billingiae Proteobacteria Unlikely neg + + neg + neg neg neg + +
Erwinia tasmaniensis Proteobacteria Unlikely neg
Erwinia teleogrylli Proteobacteria Rare neg + + + + + neg neg + +
Erysipelatoclostridium ramosum Firmicutes Widespread + neg neg neg neg neg + neg neg neg +
Erysipelatoclostridium saccharogumia Firmicutes Minor
Erysipelatoclostridium spiroforme Firmicutes Minor
Erysipelothrix larvae Firmicutes Rare +
Escherichia albertii Proteobacteria Minor neg neg neg
Escherichia coli Proteobacteria Widespread neg neg + neg vr neg neg neg + d
Escherichia dysenteriae Proteobacteria Rare
Escherichia fergusonii Proteobacteria Minor neg neg neg w
Escherichia marmotae Proteobacteria Unlikely neg neg + neg neg neg neg neg + neg
Escherichia ruysiae Proteobacteria Rare neg
Ethanoligenens harbinense Firmicutes Rare + neg +
Eubacterium barkeri Firmicutes Rare + neg
Eubacterium biforme Firmicutes Moderate + d(+)
Eubacterium brachy Firmicutes Rare + neg
Eubacterium callanderi Firmicutes Minor +
Eubacterium cellulosolvens Firmicutes Minor + +
Eubacterium coprostanoligenes Firmicutes Minor + +
Eubacterium dolichum Firmicutes Moderate + neg
Eubacterium infirmum Firmicutes Rare + neg
Eubacterium limosum Firmicutes Moderate + neg
Eubacterium maltosivorans Firmicutes Rare +
Eubacterium multiforme Firmicutes Rare + neg
Eubacterium nodatum Firmicutes Rare + neg
Eubacterium oxidoreducens Firmicutes Rare +
Eubacterium plexicaudatum Firmicutes Rare + d(+)
Eubacterium pyruvativorans Firmicutes Rare +
Eubacterium ramulus Firmicutes Moderate + d(+)
Eubacterium rectale Firmicutes Widespread + + d
Eubacterium ruminantium Firmicutes Rare + neg
Eubacterium saphenum Firmicutes Rare + neg
Eubacterium siraeum Firmicutes Widespread + neg
Eubacterium sulci Firmicutes Rare + neg neg
Eubacterium tenue Firmicutes Minor + neg
Eubacterium uniforme Firmicutes Rare + +
Eubacterium ventriosum Firmicutes Widespread + neg
Eubacterium xylanophilum Firmicutes Rare + neg
Eubacterium yurii Firmicutes Rare + neg
Ewingella americana Proteobacteria Rare neg neg +
Exiguobacterium aurantiacum Firmicutes Rare + + neg neg + d
Exiguobacterium marinum Firmicutes Rare vr
Exiguobacterium mexicanum Firmicutes Rare + w neg neg neg w + +
Exiguobacterium undae Firmicutes Rare + d neg neg neg d + +
Ezakiella coagulans Bacteroidetes Minor neg neg
Ezakiella massiliensis Bacteroidetes Rare +
Ezakiella peruensis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Facklamia hominis Firmicutes Rare + neg
Facklamia languida Firmicutes Rare +
Faecalibacillus faecis Firmicutes Rare + +
Faecalibacillus intestinalis Firmicutes Rare + +
Faecalibacterium prausnitzii Firmicutes Widespread neg
Faecalibaculum rodentium Firmicutes Rare +
Faecalicatena contorta Firmicutes Minor + +
Faecalicatena faecis Firmicutes Moderate
Faecalicatena fissicatena Firmicutes Minor +
Faecalicatena glycyrrhizinilyticum Firmicutes Minor
Faecalicatena gnavus Firmicutes Moderate
Faecalicatena lactaris Firmicutes Moderate
Faecalicatena orotica Firmicutes Minor + +
Faecalicatena torques Firmicutes Moderate
Faecalicoccus pleomorphus Firmicutes Minor + neg
Faecalimonas umbilicata Firmicutes Rare + +
Faecalitalea cylindroides Firmicutes Widespread + d(+)
Fannyhessea vaginae Actinobacteria Minor +
Fastidiosipila sanguinis Firmicutes Rare +
Fenollaria massiliensis Firmicutes Minor neg
Fenollaria timonensis Firmicutes Rare neg
Fermentimonas caenicola Bacteroidetes Rare neg
Ferrimonas balearica Proteobacteria Rare neg
Fibrobacter succinogenes Fibrobacteres Unlikely neg neg
Fictibacillus arsenicus Firmicutes Unlikely + neg neg
Filifactor alocis Firmicutes Minor neg neg
Filifactor villosus Firmicutes Unlikely +
Finegoldia magna Firmicutes Widespread + neg
Flaviflexus massiliensis Actinobacteria Rare +
Flavobacterium banpakuense Bacteroidetes Unlikely neg
Flavobacterium caeni Bacteroidetes Non neg
Flavobacterium cheniae Bacteroidetes Rare neg
Flavobacterium daejeonense Bacteroidetes Unlikely neg
Flavobacterium lindanitolerans Bacteroidetes Rare neg
Flavobacterium oncorhynchi Bacteroidetes Unlikely neg
Flavobacterium sakaeratica Bacteroidetes Rare neg
Flavonifractor plautii Firmicutes Widespread vr neg neg
Flexispira rappini Proteobacteria Rare neg
Flintibacter butyricus Firmicutes Rare neg neg
Fournierella massiliensis Firmicutes Moderate neg neg neg neg + + neg neg neg +
Francisella tularensis Proteobacteria Non neg
Franconibacter pulveris Proteobacteria Rare neg neg
Fredinandcohnia humi Firmicutes Non + w neg neg neg neg neg neg neg w
Fretibacterium fastidiosum Synergistetes Rare neg
Fructilactobacillus florum Firmicutes Unlikely + neg w neg neg neg neg neg
Fructilactobacillus fructivorans Firmicutes Unlikely + + d
Fructilactobacillus sanfranciscensis Firmicutes Rare + + neg
Fucophilus fucoidanolyticus Verrucomicrobia Rare neg
Fundidesulfovibrio putealis Proteobacteria Rare neg
Furfurilactobacillus rossiae Firmicutes Unlikely + neg w neg neg neg neg neg + neg
Fusicatenibacter saccharivorans Firmicutes Moderate + +
Fusobacterium canifelinum Fusobacteria Rare neg
Fusobacterium gonidiaformans Fusobacteria Minor neg
Fusobacterium massiliense Fusobacteria Rare neg +
Fusobacterium mortiferum Fusobacteria Moderate neg +
Fusobacterium naviforme Fusobacteria Rare neg
Fusobacterium necrogenes Fusobacteria Rare neg
Fusobacterium necrophorum Fusobacteria Minor neg
Fusobacterium necrophorum subsp. funduliforme Fusobacteria Rare neg neg
Fusobacterium nucleatum Fusobacteria Minor neg neg
Fusobacterium nucleatum subsp. animalis Fusobacteria Rare neg
Fusobacterium nucleatum subsp. nucleatum Fusobacteria Minor neg
Fusobacterium nucleatum subsp. polymorphum Fusobacteria Rare neg
Fusobacterium nucleatum subsp. vincentii Fusobacteria Rare neg
Fusobacterium perfoetens Fusobacteria Rare neg neg
Fusobacterium periodonticum Fusobacteria Minor neg
Fusobacterium pseudoperiodonticum Fusobacteria Unlikely neg
Fusobacterium russii Fusobacteria Minor neg
Fusobacterium ulcerans Fusobacteria Rare neg
Fusobacterium varium Fusobacteria Moderate neg neg
Gabonia massiliensis Bacteroidetes Rare neg + + + + neg
Gabonibacter massiliensis Bacteroidetes Minor neg +
Gabonibacter timonensis Bacteroidetes Rare +
Gallibacterium anatis Proteobacteria Rare neg neg neg neg
Gardnerella leopoldii Actinobacteria Unlikely neg
Gardnerella vaginalis Actinobacteria Minor neg neg neg
Gemella asaccharolytica Firmicutes Rare vr
Gemella haemolysans Firmicutes Minor + neg
Gemella morbillorum Firmicutes Minor + vr neg neg neg neg neg neg neg + neg
Gemella sanguinis Firmicutes Minor + neg neg neg neg neg neg neg neg + neg
Gemmatimonas groenlandica Gemmatimonadetes Non neg
Gemmiger formicilis Firmicutes Moderate neg neg
Gemmiger variabile Firmicutes Moderate
Geobacillus stearothermophilus Firmicutes Unlikely + neg neg neg + + neg neg neg neg
Geobacillus vulcani Firmicutes Unlikely + neg d(+) neg + d(+)
Geodermatophilus obscurus Actinobacteria Non +
Georgenia muralis Actinobacteria Rare +
Georgenia satyanarayanai Actinobacteria Unlikely +
Geosporobacter ferrireducens Firmicutes Unlikely neg
Gleimia europaea Actinobacteria Rare + neg neg d d neg neg
Globicatella sulfidifaciens Firmicutes Rare vr + neg neg neg neg neg neg neg
Glutamicibacter arilaitensis Actinobacteria Unlikely +
Glutamicibacter protophormiae Actinobacteria Rare +
Gorbachella massiliensis Firmicutes Rare neg
Gordonia alkanivorans Actinobacteria Rare +
Gordonia rubripertincta Actinobacteria Unlikely +
Gordonia terrae Actinobacteria Rare +
Gordonibacter massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg + +
Gordonibacter pamelaeae Actinobacteria Moderate + neg
Gordonibacter urolithinfaciens Actinobacteria Minor + neg
Gorillibacterium timonense Firmicutes Rare neg
Gottschalkia acidurici Firmicutes Unlikely +
Gracilibacillus dipsosauri Firmicutes Rare +
Gracilibacillus massiliensis Firmicutes Rare +
Gracilibacillus phocaeensis Firmicutes Rare +
Gracilibacillus thailandensis Firmicutes Non + +
Gracilibacillus timonensis Firmicutes Rare +
Granulicatella adiacens Firmicutes Minor + neg
Granulicatella elegans Firmicutes Minor + neg
Granulicatella para-adiacens Firmicutes Rare +
Grimontia hollisae Proteobacteria Rare neg neg neg neg
Gulosibacter bifidus Actinobacteria Unlikely +
Haemophilus ducreyi Proteobacteria Rare neg neg
Haemophilus haemolyticus Proteobacteria Minor neg neg
Haemophilus influenzae Proteobacteria Minor neg neg neg
Haemophilus parahaemolyticus Proteobacteria Minor neg neg
Haemophilus parainfluenzae Proteobacteria Widespread neg neg neg
Haemophilus paraphrohaemolyticus Proteobacteria Rare neg neg
Haemophilus pittmaniae Proteobacteria Minor neg
Haemophilus quentini Proteobacteria Rare neg
Haemophilus sputorum Proteobacteria Minor neg neg
Hafnia alvei Proteobacteria Minor neg neg neg d
Hafnia paralvei Proteobacteria Rare neg neg neg
Hahella ganghwensis Proteobacteria Rare neg
Halanaerobaculum tunisiense Firmicutes Unlikely neg
Halobacillus dabanensis Firmicutes Unlikely +
Halobacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Halobacillus karajensis Firmicutes Non +
Halobacillus massiliensis Firmicutes Unlikely +
Halobacillus salinus Firmicutes Rare +
Halobacillus trueperi Firmicutes Unlikely +
Halobacteroides halobius Firmicutes Unlikely neg
Haloferax alexandrinus Euryarchaeota Unlikely neg +
Haloferax massiliensis Euryarchaeota Rare neg
Haloimpatiens massiliensis Firmicutes Rare + + + + + + + neg + +
Halomonas massiliensis Proteobacteria Rare neg
Halomonas muralis Proteobacteria Non neg
Halomonas salina Proteobacteria Non neg neg neg
Halomonas utahensis Proteobacteria Unlikely neg
Halopseudomonas bauzanensis Proteobacteria Unlikely neg
Halopseudomonas pelagia Proteobacteria Unlikely neg
Haploplasma axanthum Tenericutes Unlikely neg +
Harryflintia acetispora Firmicutes Rare neg neg
Hathewaya histolytica Firmicutes Rare +
Hathewaya limosa Firmicutes Rare + neg
Hathewaya massiliensis Firmicutes Rare + + neg neg + + + + +
Helcobacillus massiliensis Actinobacteria Rare + neg neg neg neg neg neg neg w neg
Helcococcus sueciensis Firmicutes Rare + neg
Helicobacter bilis Proteobacteria Unlikely neg
Helicobacter canadensis Proteobacteria Unlikely neg
Helicobacter canis Proteobacteria Unlikely neg
Helicobacter cinaedi Proteobacteria Rare neg
Helicobacter felis Proteobacteria Non neg
Helicobacter fennelliae Proteobacteria Rare neg
Helicobacter heilmannii Proteobacteria Non neg
Helicobacter macacae Proteobacteria Unlikely neg
Helicobacter pametensis Proteobacteria Rare neg
Helicobacter pullorum Proteobacteria Minor neg
Helicobacter pylori Proteobacteria Non neg
Helicobacter rodentium Proteobacteria Rare neg
Helicobacter winghamensis Proteobacteria Rare neg
Heliomicrobium modesticaldum Firmicutes Unlikely neg
Herbaspirillum autotrophicum Proteobacteria Unlikely neg
Herbaspirillum huttiense Proteobacteria Rare neg neg neg neg neg neg
Herbinix hemicellulosilytica Firmicutes Unlikely +
Herbinix luporum Firmicutes Unlikely +
Herminiimonas contaminans Proteobacteria Unlikely neg
Hespellia porcina Firmicutes Rare +
Hespellia stercorisuis Firmicutes Rare +
Heyndrickxia oleronia Firmicutes Unlikely neg neg neg neg neg neg neg neg + d
Heyndrickxia sporothermodurans Firmicutes Unlikely + d neg neg neg d neg neg w d
Histophilus somni Proteobacteria Rare neg neg
Holdemanella biformis Firmicutes Moderate + +
Holdemania filiformis Firmicutes Moderate + +
Holdemania massiliensis Firmicutes Minor + + + + +
Holophaga foetida Acidobacteria Non neg
Howardella ureilytica Firmicutes Rare +
Hugonella massiliensis Actinobacteria Rare + neg neg + + neg neg neg + neg
Humisphaera borealis Planctomycetes Unlikely neg
Hungatella effluvii Firmicutes Minor +
Hungatella hathewayi Firmicutes Widespread + +
Hungatella saccharolyticum Firmicutes Rare
Hungatella xylanolytica Firmicutes Rare neg +
Hydrogenibacillus schlegelii Firmicutes Unlikely vr neg
Hydrogenoanaerobacterium saccharovorans Firmicutes Rare neg neg
Hydrogenophaga pseudoflava Proteobacteria Unlikely neg
Hydrogenovibrio crunogenus Proteobacteria Unlikely neg
Hymenobacter rigui Bacteroidetes Rare neg
Hymenobacter russus Bacteroidetes Unlikely neg
Hyphomicrobium facile Proteobacteria Rare neg
Ihubacter massiliensis Firmicutes Rare neg
Ihuprevotella massiliensis Bacteroidetes Rare neg
Ileibacterium valens Firmicutes Rare +
Inediibacterium massiliense Firmicutes Rare + +
Intestinibacillus massiliensis Firmicutes Rare neg
Intestinibacter bartlettii Firmicutes Widespread + neg
Intestinibaculum porci Firmicutes Unlikely + w neg neg neg w neg neg w +
Intestinimonas butyriciproducens Firmicutes Moderate +
Intestinimonas gabonensis Firmicutes Rare neg
Intestinimonas massiliensis Firmicutes Moderate neg neg neg neg + neg neg neg neg neg
Intestinimonas timonensis Firmicutes Rare neg
Isoptericola variabilis Actinobacteria Rare + neg neg
Janibacter anophelis Actinobacteria Rare + neg neg
Janibacter hoylei Actinobacteria Non +
Janibacter limosus Actinobacteria Unlikely + neg
Janibacter terrae Actinobacteria Rare + neg neg
Jeotgalibaca arthritidis Firmicutes Unlikely + neg neg neg neg neg neg + neg
Jeotgalibaca porci Firmicutes Unlikely + + neg neg neg neg neg + +
Jeotgalicoccus halotolerans Firmicutes Rare +
Johnsonella ignava Firmicutes Rare neg neg
Jonquetella anthropi Synergistetes Rare neg
Kalamiella piersonii Proteobacteria Unlikely neg
Kallipyga gabonensis Firmicutes Rare +
Kallipyga massiliensis Firmicutes Rare +
Kandleria vitulina Firmicutes Rare + +
Kerstersia gyiorum Proteobacteria Rare neg
Khelaifiella massiliensis Firmicutes Rare +
Kineothrix alysoides Firmicutes Rare neg
Kingella denitrificans Proteobacteria Unlikely neg neg neg
Kingella kingae Proteobacteria Rare neg
Kingella oralis Proteobacteria Unlikely neg
Kiritimatiella glycovorans Kiritimatiellaeota Unlikely neg
Klebsiella aerogenes Proteobacteria Moderate neg neg + +
Klebsiella grimontii Proteobacteria Minor neg
Klebsiella michiganensis Proteobacteria Minor neg
Klebsiella oxytoca Proteobacteria Moderate neg +
Klebsiella pneumoniae Proteobacteria Widespread neg + neg + neg neg + +
Klebsiella pneumoniae subsp. ozaenae Proteobacteria Rare neg
Klebsiella pneumoniae subsp. rhinoscleromatis Proteobacteria Rare neg
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria Minor neg + neg neg d(neg) + neg neg d +
Klebsiella quasivariicola Proteobacteria Minor
Klebsiella variicola Proteobacteria Minor neg
Kluyvera ascorbata Proteobacteria Minor neg + + +
Kluyvera cryocrescens Proteobacteria Rare neg + +
Kluyvera georgiana Proteobacteria Rare neg + + +
Kluyvera intermedia Proteobacteria Rare neg + +
Kocuria carniphila Actinobacteria Unlikely + neg neg
Kocuria marina Actinobacteria Rare + vr neg
Kocuria palustris Actinobacteria Unlikely + neg vr neg neg
Kocuria polaris Actinobacteria Unlikely +
Kocuria rhizophila Actinobacteria Unlikely + neg neg
Kocuria rosea Actinobacteria Unlikely + neg neg
Kocuria salsicia Actinobacteria Unlikely +
Kocuria varians Actinobacteria Rare + neg
Kosakonia cowanii Proteobacteria Minor neg + neg neg +
Krasilnikoviella flava Actinobacteria Rare +
Kurthia gibsonii Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Kurthia massiliensis Firmicutes Rare +
Kurthia senegalensis Firmicutes Rare +
Kurthia sp. Dielmo Firmicutes Rare +
Kurthia zopfii Firmicutes Rare + +
Kushneria sinocarnis Firmicutes Unlikely neg +
Kytococcus schroeteri Actinobacteria Rare + neg neg neg
Kytococcus sedentarius Actinobacteria Rare + neg neg
Labilithrix luteola Proteobacteria Non neg
Lachnoanaerobaculum orale Firmicutes Rare +
Lachnoanaerobaculum saburreum Firmicutes Rare +
Lachnoanaerobaculum umeaense Firmicutes Rare +
Lachnobacterium bovis Firmicutes Rare +
Lachnoclostridium bouchesdurhonense Firmicutes Rare neg
Lachnoclostridium edouardi Firmicutes Minor +
Lachnoclostridium massiliosenegalense Firmicutes Rare +
Lachnoclostridium pacaense Firmicutes Rare vr
Lachnoclostridium phocaeense Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Lachnoclostridium phytofermentans Firmicutes Minor neg
Lachnoclostridium touaregense Firmicutes Rare +
Lachnospira eligens Firmicutes Widespread + d(+)
Lachnospira multipara Firmicutes Rare + +
Lachnospira pectinoschiza Firmicutes Minor + +
Lachnospira rogosae Firmicutes Moderate
Lacrimispora aerotolerans Firmicutes Rare neg +
Lacrimispora amygdalina Firmicutes Rare +
Lacrimispora celerecrescens Firmicutes Rare +
Lacrimispora indolis Firmicutes Minor neg neg
Lacrimispora saccharolytica Firmicutes Moderate neg
Lacrimispora sphenoides Firmicutes Minor + +
Lacticaseibacillus casei Firmicutes Rare + + + neg neg neg neg neg neg + +
Lacticaseibacillus paracasei Firmicutes Minor + + + neg neg vr neg neg neg + +
Lacticaseibacillus paracasei subsp. tolerans Firmicutes Unlikely + neg w neg neg neg neg neg + neg
Lacticaseibacillus paragasseri Firmicutes Unlikely + + neg neg neg vr neg neg + +
Lacticaseibacillus rhamnosus Firmicutes Moderate + + + neg neg + vr neg neg + +
Lacticaseibacillus saniviri Firmicutes Unlikely + + w w neg neg neg neg + +
Lacticaseibacillus sharpeae Firmicutes Unlikely + +
Lacticaseibacillus zeae Firmicutes Unlikely + + + neg neg neg neg neg + +
Lacticigenium naphtae Firmicutes Non vr + + + +
Lactiplantibacillus paraplantarum Firmicutes Rare + + + neg neg neg neg neg + +
Lactiplantibacillus pentosus Firmicutes Rare + + + neg neg d neg neg + +
Lactiplantibacillus plantarum Firmicutes Moderate + + d(+) neg neg d(neg) d(neg) neg + +
Lactiplantibacillus xiangfangensis Firmicutes Rare + neg neg neg neg neg neg neg + +
Lactobacillus acidophilus Firmicutes Widespread + vr neg neg neg neg neg neg neg + +
Lactobacillus amylolyticus Firmicutes Unlikely + d
Lactobacillus amylovorus Firmicutes Minor + + neg neg neg neg vr neg neg + +
Lactobacillus crispatus Firmicutes Moderate + + neg neg neg vr vr neg neg + +
Lactobacillus delbrueckii subsp. bulgaricus Firmicutes Rare + neg neg
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes Minor + neg neg neg neg neg + neg neg neg neg
Lactobacillus delbrueckii subsp. lactis Firmicutes Unlikely + neg d
Lactobacillus equicursoris Firmicutes Rare + neg +
Lactobacillus gasseri Firmicutes Moderate + vr neg neg neg neg vr neg neg vr +
Lactobacillus gigeriorum Firmicutes Unlikely + + neg neg neg neg neg neg + +
Lactobacillus hamsteri Firmicutes Rare + neg +
Lactobacillus helveticus Firmicutes Rare + neg neg neg neg neg + neg neg + neg
Lactobacillus hominis Firmicutes Unlikely + neg neg neg neg neg neg neg + +
Lactobacillus iners Firmicutes Rare + neg neg neg neg neg neg neg neg + neg
Lactobacillus intestinalis Firmicutes Unlikely + neg
Lactobacillus jensenii Firmicutes Unlikely + + neg neg neg vr neg neg neg vr +
Lactobacillus johnsonii Firmicutes Minor + neg neg neg neg neg vr neg neg + +
Lactobacillus kalixensis Firmicutes Minor + + neg neg neg neg neg neg + +
Lactobacillus kefiranofaciens Firmicutes Rare + neg neg neg neg neg neg d d
Lactobacillus leichmannii Firmicutes Rare + neg
Lactobacillus pasteurii Firmicutes Unlikely + + neg neg neg neg neg neg + +
Lactobacillus psittaci Firmicutes Unlikely +
Lactobacillus rogosae Firmicutes Rare + neg
Lactobacillus timonensis Firmicutes Unlikely +
Lactobacillus ultunensis Firmicutes Minor + + neg neg neg neg neg neg + +
Lactococcus cremoris Firmicutes Rare + neg neg neg neg neg neg neg + d(neg)
Lactococcus garvieae Firmicutes Minor + + d(w) neg neg neg vr neg neg + +
Lactococcus lactis subsp. lactis Firmicutes Widespread + d(+) neg neg neg neg vr neg neg + d(+)
Lactococcus petauri Firmicutes Rare + + d neg neg + +
Lactococcus plantarum Firmicutes Rare + + neg neg neg neg + neg neg + +
Lactococcus raffinolactis Firmicutes Minor + + neg neg neg d(w) neg neg neg + +
Lactonifactor longoviformis Firmicutes Minor neg
Lacunisphaera limnophila Verrucomicrobia Unlikely neg
Lagierella massiliensis Firmicutes Rare + +
Lancefieldella parvula Actinobacteria Minor + d
Lancefieldella rimae Actinobacteria Minor + d
Lapidilactobacillus dextrinicus Firmicutes Non + + neg +
Laribacter hongkongensis Proteobacteria Rare neg
Lascolabacillus massiliensis Bacteroidetes Rare neg
Latilactobacillus curvatus Firmicutes Minor + neg neg neg neg neg neg neg neg + d(neg)
Latilactobacillus sakei Firmicutes Minor + neg + neg neg neg neg neg neg + d(+)
Latilactobacillus sakei subsp. carnosus Firmicutes Rare + neg + neg w
Lautropia mirabilis Proteobacteria Minor neg neg neg
Lawsonella clevelandensis Actinobacteria Rare vr
Lawsonia intracellularis Proteobacteria Unlikely neg
Lawsonibacter asaccharolyticus Firmicutes Moderate + neg
Leclercia adecarboxylata Proteobacteria Rare neg + + + neg neg neg neg +
Lederbergia galactosidilyticus Firmicutes Rare + d neg neg neg d neg neg + d
Lederbergia lentus Firmicutes Unlikely + w neg neg neg d w + w
Legionella bozemanae Proteobacteria Non neg
Legionella pneumophila Proteobacteria Non neg
Lelliottia amnigena Proteobacteria Rare neg d(neg) +
Lelliottia nimipressuralis Proteobacteria Rare neg + +
Leminorella grimontii Proteobacteria Rare neg neg neg neg
Leminorella richardii Proteobacteria Rare neg neg neg neg
Lentibacillus massiliensis Firmicutes Rare +
Lentibacillus timonensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Lentilactobacillus buchneri subsp. buchneri Firmicutes Minor + neg vr neg vr vr neg neg neg neg neg
Lentilactobacillus diolivorans Firmicutes Unlikely + + neg + + neg + neg neg
Lentilactobacillus farraginis Firmicutes Unlikely + w neg
Lentilactobacillus hilgardii Firmicutes Rare + neg + neg neg neg neg neg neg neg
Lentilactobacillus kefiri Firmicutes Non + neg + vr neg neg neg neg neg neg
Lentilactobacillus kisonensis Firmicutes Unlikely + neg neg neg neg neg neg + neg
Lentilactobacillus otakiensis Firmicutes Unlikely + neg w neg neg neg neg neg neg neg
Lentilactobacillus parabuchneri Firmicutes Rare + neg d d neg neg neg neg neg neg
Lentilactobacillus parafarraginis Firmicutes Unlikely + w neg
Lentilactobacillus senioris Firmicutes Unlikely + neg d neg neg neg neg neg w neg
Leptospira interrogans Spirochaetes Non neg
Leptotrichia amnionii Fusobacteria Rare neg
Leptotrichia buccalis Fusobacteria Rare neg + neg neg neg neg vr neg neg neg +
Leptotrichia hofstadii Fusobacteria Rare neg
Leptotrichia hongkongensis Fusobacteria Rare vr
Leptotrichia massiliensis Fusobacteria Rare +
Leptotrichia shahii Fusobacteria Rare neg
Leptotrichia wadei Fusobacteria Rare neg
Leucobacter aridicollis Actinobacteria Unlikely +
Leuconostoc carnosum Firmicutes Unlikely + neg neg + neg
Leuconostoc citreum Firmicutes Minor + d(+) d(+) d(neg) neg + neg neg neg + d(+)
Leuconostoc gelidum Firmicutes Rare + + neg neg neg + neg neg neg +
Leuconostoc gelidum subsp. gasicomitatum Firmicutes Non + neg d neg + + neg neg + neg
Leuconostoc holzapfelii Firmicutes Rare + neg + neg neg + neg neg + neg
Leuconostoc inhae Firmicutes Unlikely + neg d neg neg + neg neg + d
Leuconostoc kimchii Firmicutes Rare + + +
Leuconostoc lactis Firmicutes Minor + neg neg neg neg d neg neg + neg
Leuconostoc mesenteroides subsp. cremoris Firmicutes Rare + d neg
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes Minor + vr neg neg neg + neg neg neg + d
Leuconostoc pseudomesenteroides Firmicutes Unlikely + d(neg) d d(neg) d(neg) + neg + d
Levilactobacillus brevis Firmicutes Minor + neg vr neg vr neg neg neg neg vr neg
Levilactobacillus brevis subsp. gravesensis Firmicutes Unlikely +
Levilactobacillus namurensis Firmicutes Unlikely + neg + neg neg neg neg + + neg
Levilactobacillus parabrevis Firmicutes Unlikely + neg + neg neg d neg + + neg
Levyella massiliensis Firmicutes Rare + neg
Ligilactobacillus acidipiscis Firmicutes Unlikely + + neg neg d
Ligilactobacillus agilis Firmicutes Rare + + neg neg neg neg neg neg neg + +
Ligilactobacillus animalis Firmicutes Minor + + neg neg neg neg neg neg neg + +
Ligilactobacillus ceti Firmicutes Unlikely + neg neg + neg neg neg neg neg
Ligilactobacillus equi Firmicutes Unlikely + d(neg) neg neg neg neg neg neg d d(neg)
Ligilactobacillus murinus Firmicutes Rare + neg
Ligilactobacillus pobuzihii Firmicutes Unlikely + neg + neg neg +
Ligilactobacillus ruminis Firmicutes Widespread + + neg neg neg neg neg neg + +
Ligilactobacillus salivarius Firmicutes Widespread + neg neg neg neg neg neg neg neg + neg
Limnobacter thiooxidans Proteobacteria Unlikely neg
Limnochorda pilosa Firmicutes Unlikely neg
Limosilactobacillus antri Firmicutes Rare + neg + neg neg w neg neg neg neg neg
Limosilactobacillus caccae Firmicutes Rare + neg + + + +
Limosilactobacillus coleohominis Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg neg
Limosilactobacillus fermentum Firmicutes Widespread + neg vr neg vr neg neg neg neg neg neg
Limosilactobacillus frumenti Firmicutes Non + + + d d + +
Limosilactobacillus gastricus Firmicutes Unlikely + + + neg neg + neg neg neg d +
Limosilactobacillus ingluviei Firmicutes Non + neg d neg neg neg neg + neg neg
Limosilactobacillus mucosae Firmicutes Rare + neg + vr vr neg neg neg + neg neg
Limosilactobacillus oris Firmicutes Minor + neg + neg neg neg neg neg neg neg
Limosilactobacillus reuteri Firmicutes Minor + neg vr neg neg neg neg neg neg neg neg
Limosilactobacillus vaginalis Firmicutes Rare + neg neg neg neg neg neg neg neg neg neg
Limosilactobacillus walteri Firmicutes Rare +
Liquorilactobacillus mali Firmicutes Unlikely + + neg d neg +
Liquorilactobacillus satsumensis Firmicutes Non + d +
Liquorilactobacillus vini Firmicutes Unlikely + neg neg neg neg neg neg neg + +
Listeria floridensis Firmicutes Rare + + neg neg neg + neg neg + +
Listeria grayi Firmicutes Rare + d d neg + + + + neg d +
Listeria innocua Firmicutes Rare + d neg neg d + + + neg d +
Listeria ivanovii Firmicutes Rare + + neg neg + + + neg neg + +
Listeria marthii Firmicutes Rare + +
Listeria monocytogenes Firmicutes Rare + + neg neg d + + + neg + +
Listeria seeligeri Firmicutes Rare + d + + + d(neg) +
Listeria welshimeri Firmicutes Rare + + neg neg + + + + neg + w(+)
Litchfieldia alkalitelluris Firmicutes Rare + neg + neg
Loigolactobacillus bifermentans Firmicutes Unlikely + neg neg
Loigolactobacillus coryniformis Firmicutes Minor + neg + neg neg neg neg neg + +
Loigolactobacillus coryniformis subsp. torquens Firmicutes Unlikely + +
Longicatena caecimuris Firmicutes Rare +
Lutispora thermophila Firmicutes Unlikely neg
Luxibacter massiliensis Firmicutes Rare + + neg + + neg neg + neg +
Lysinibacillus boronitolerans Firmicutes Rare + neg neg neg neg neg neg + neg
Lysinibacillus fusiformis Firmicutes Rare vr
Lysinibacillus macroides Firmicutes Unlikely vr neg
Lysinibacillus meyeri Firmicutes Unlikely + neg + neg + neg neg neg neg neg
Lysinibacillus sphaericus Firmicutes Rare + neg neg neg neg neg neg neg vr neg
Lysinibacillus varians Firmicutes Rare +
Lysinibacillus xylanilyticus Firmicutes Rare + neg neg neg neg neg neg neg
Lysobacter soli Proteobacteria Rare neg neg neg neg
Macellibacteroides fermentans Bacteroidetes Rare + neg
Macrococcus caseolyticus Firmicutes Unlikely + neg
Mageeibacillus indolicus Firmicutes Rare vr
Mahella australiensis Firmicutes Unlikely +
Mailhella massiliensis Proteobacteria Rare neg
Mameliella alba Proteobacteria Unlikely neg
Mammaliicoccus fleurettii Firmicutes Rare + neg
Mammaliicoccus lentus Firmicutes Rare + + + +
Mammaliicoccus sciuri Firmicutes Rare + +
Mammaliicoccus vitulinus Firmicutes Unlikely + + + neg d(+)
Mannheimia granulomatis Proteobacteria Rare neg d d
Mannheimia haemolytica Proteobacteria Rare neg neg neg
Mannheimia succiniciproducens Proteobacteria Rare neg
Marasmitruncus massiliensis Firmicutes Rare +
Marseilla massiliensis Bacteroidetes Rare neg
Marseillibacter massiliensis Firmicutes Rare neg
Marvinbryantia formatexigens Firmicutes Moderate +
Massilia aurea Proteobacteria Unlikely neg
Massilia brevitalea Proteobacteria Non neg
Massilia haematophila Proteobacteria Rare neg
Massilia norwichensis Proteobacteria Unlikely neg
Massilia timonae Proteobacteria Non neg
Massilia varians Proteobacteria Unlikely neg
Massilibacillus massiliensis Firmicutes Rare +
Massilibacterium senegalense Firmicutes Rare neg + neg neg neg neg neg neg + +
Massilicoli timonensis Firmicutes Rare neg + neg neg + neg + neg + +
Massiliimalia massiliensis Firmicutes Rare neg
Massiliimalia timonensis Firmicutes Minor +
Massilimicrobiota timonensis Firmicutes Moderate neg + + neg + neg + neg +
Massilioclostridium coli Firmicutes Moderate neg neg +
Massiliprevotella massiliensis Bacteroidetes Rare neg
Massilistercora timonensis Firmicutes Rare neg neg neg neg + d d +
Mediterranea massiliensis Bacteroidetes Rare neg +
Mediterraneibacter faecis Firmicutes Minor + neg
Mediterraneibacter glycyrrhizinilyticus Firmicutes Minor + neg
Mediterraneibacter massiliensis Firmicutes Rare + + neg + neg + neg neg neg +
Megalodesulfovibrio gigas Proteobacteria Unlikely neg
Megamonas funiformis Firmicutes Minor neg +
Megamonas hypermegale Firmicutes Moderate neg d
Megamonas rupellensis Firmicutes Rare neg +
Megasphaera cerevisiae Firmicutes Rare neg
Megasphaera elsdenii Firmicutes Moderate neg + neg
Megasphaera indica Firmicutes Rare neg
Megasphaera massiliensis Firmicutes Rare neg + + w + + +
Megasphaera micronuciformis Firmicutes Minor neg neg
Megasphaera stantonii Firmicutes Rare neg
Meiothermus silvanus Deinococcus-Thermus Unlikely neg
Merdibacter massiliensis Firmicutes Rare neg
Merdimonas faecis Firmicutes Rare +
Mesobacillus jeotgali Firmicutes Rare vr neg neg neg d neg neg neg neg neg
Mesobacillus subterraneus Firmicutes Rare neg
Mesorhizobium australicum Proteobacteria Unlikely neg
Mesorhizobium jarvisii Proteobacteria Unlikely neg neg neg neg w neg
Mesorhizobium loti Proteobacteria Rare neg
Mesorhizobium muleiense Proteobacteria Unlikely neg
Mesosutterella multiformis Proteobacteria Rare neg
Metabacillus galliciensis Firmicutes Unlikely + neg
Metabacillus idriensis Firmicutes Rare + + + + + + +
Metabacillus litoralis Firmicutes Rare vr
Metabacillus niabensis Firmicutes Rare +
Metakosakonia massiliensis Proteobacteria Rare neg
Metamycoplasma anseris Tenericutes Unlikely unk
Metaprevotella massiliensis Bacteroidetes Rare neg
Methanobrevibacter arboriphilus Euryarchaeota Rare +
Methanobrevibacter millerae Euryarchaeota Rare +
Methanobrevibacter oralis Euryarchaeota Rare +
Methanobrevibacter ruminantium Euryarchaeota Rare +
Methanobrevibacter smithii Euryarchaeota Moderate +
Methanococcus voltae Euryarchaeota Rare neg
Methanomassiliicoccus intestinalis Euryarchaeota Rare +
Methanomassiliicoccus luminyensis Candidatus Thermoplasmatota Rare +
Methanomethylophilus alvus Candidatus Thermoplasmatota Rare
Methanosphaera stadtmanae Euryarchaeota Minor +
Methylibium petroleiphilum Proteobacteria Unlikely neg
Methylobacterium adhaesivum Proteobacteria Unlikely neg
Methylobacterium brachiatum Proteobacteria Unlikely neg
Methylobacterium jeotgali Proteobacteria Non neg neg neg neg neg neg neg neg neg
Methylobacterium mesophilicum Proteobacteria Non neg neg neg neg neg neg neg neg neg neg
Methylobacterium organophilum Proteobacteria Unlikely neg
Methylobacterium oryzae Proteobacteria Unlikely neg
Methylobacterium phyllosphaerae Proteobacteria Unlikely neg
Methylobacterium radiotolerans Proteobacteria Non neg neg neg neg neg neg neg neg neg neg
Methylomusa anaerophila Firmicutes Unlikely neg neg
Methylorubrum aminovorans Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg
Methylorubrum extorquens Proteobacteria Non neg neg neg neg neg neg neg neg neg neg
Methylorubrum populi Proteobacteria Unlikely neg
Methylorubrum thiocyanatum Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg
Methylorubrum zatmanii Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg
Methyloversatilis discipulorum Proteobacteria Rare neg
Methyloversatilis universalis Proteobacteria Rare neg
Microbacterium aurum Actinobacteria Rare + neg neg
Microbacterium chocolatum Actinobacteria Unlikely +
Microbacterium deminutum Actinobacteria Unlikely +
Microbacterium esteraromaticum Actinobacteria Unlikely +
Microbacterium foliorum Actinobacteria Unlikely + + neg neg neg d d d +
Microbacterium ginsengisoli Actinobacteria Non + neg neg neg neg neg neg neg
Microbacterium gubbeenense Actinobacteria Unlikely +
Microbacterium hydrocarbonoxydans Actinobacteria Unlikely +
Microbacterium kitamiense Actinobacteria Unlikely + neg
Microbacterium lacticum Actinobacteria Unlikely + + neg neg neg neg neg neg neg + +
Microbacterium liquefaciens Actinobacteria Unlikely +
Microbacterium luteolum Actinobacteria Non +
Microbacterium maritypicum Actinobacteria Unlikely +
Microbacterium mitrae Actinobacteria Unlikely +
Microbacterium natoriense Actinobacteria Unlikely + + neg neg neg + neg + +
Microbacterium oleivorans Actinobacteria Unlikely +
Microbacterium oxydans Actinobacteria Unlikely + +
Microbacterium paraoxydans Actinobacteria Rare + neg
Microbacterium phyllosphaerae Actinobacteria Unlikely + + neg neg neg d d d +
Microbacterium saccharophilum Actinobacteria Unlikely +
Microbacterium schleiferi Actinobacteria Unlikely +
Microbacterium sediminicola Actinobacteria Unlikely +
Microbacterium testaceum Actinobacteria Non +
Microbispora rosea Actinobacteria Rare +
Micrococcus cohnii Actinobacteria Unlikely +
Micrococcus endophyticus Actinobacteria Unlikely + + neg neg + + neg neg + neg
Micrococcus luteus Actinobacteria Minor + + neg neg + + neg neg neg +
Micrococcus lylae Actinobacteria Rare + neg neg neg + neg neg neg neg +
Micrococcus terreus Actinobacteria Rare +
Microlunatus phosphovorus Actinobacteria Unlikely +
Micromonospora aurantiaca Actinobacteria Rare +
Micropruina glycogenica Actinobacteria Rare +
Microvirga aerophila Proteobacteria Unlikely neg
Microvirga massiliensis Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg
Microvirgula aerodenitrificans Proteobacteria Unlikely neg
Millionella massiliensis Bacteroidetes Rare neg
Miniphocaeibacter massiliensis Firmicutes Rare +
Mitsuokella jalaludinii Firmicutes Minor neg + neg neg + neg neg neg neg +
Mitsuokella multacida Firmicutes Moderate neg + + neg + neg neg neg neg +
Mixta calida Proteobacteria Rare neg + + + + neg neg neg + +
Mixta intestinalis Proteobacteria Rare neg
Mobilibacterium massiliense Firmicutes Rare neg
Mobilibacterium timonense Firmicutes Rare neg
Mobilicoccus massiliensis Actinobacteria Rare +
Mobiluncus curtisii Actinobacteria Rare vr neg neg
Moellerella wisconsensis Proteobacteria Rare neg neg neg neg
Mogibacterium diversum Firmicutes Rare +
Mogibacterium neglectum Firmicutes Rare +
Mogibacterium pumilum Firmicutes Rare +
Mogibacterium timidum Firmicutes Rare + neg
Mogibacterium vescum Firmicutes Unlikely +
Monoglobus pectinilyticus Firmicutes Minor +
Moorella glycerini Firmicutes Unlikely +
Moraxella catarrhalis Proteobacteria Unlikely neg neg neg
Moraxella osloensis Proteobacteria Unlikely neg
Mordavella massiliensis Firmicutes Rare neg
Morganella morganii Proteobacteria Minor neg neg neg neg neg neg
Moryella indoligenes Firmicutes Rare + neg
Mucispirillum schaedleri Deferribacteres Rare neg
Murdochiella asaccharolytica Firmicutes Rare +
Murdochiella massiliensis Firmicutes Rare + + +
Murdochiella vaginalis Firmicutes Rare + neg neg neg + neg neg neg neg neg
Muribaculum gordoncarteri Bacteroidetes Unlikely neg
Muribaculum intestinale Bacteroidetes Minor neg neg
Murimonas intestini Firmicutes Rare +
Mycobacterium abscessus Actinobacteria Unlikely vr
Mycobacterium avium Actinobacteria Unlikely vr
Mycobacterium avium subsp. paratuberculosis Actinobacteria Unlikely vr
Mycobacterium colombiense Actinobacteria Rare vr
Mycobacterium florentinum Actinobacteria Rare vr
Mycobacterium fortuitum Actinobacteria Rare vr
Mycobacterium gastri Actinobacteria Rare vr
Mycobacterium gordonae Actinobacteria Rare vr
Mycobacterium interjectum Actinobacteria Rare vr
Mycobacterium kansasii Actinobacteria Unlikely vr
Mycobacterium lentiflavum Actinobacteria Rare vr
Mycobacterium simiae Actinobacteria Rare vr
Mycobacterium terrae Actinobacteria Rare vr
Mycobacterium tuberculosis Actinobacteria Non vr
Mycobacterium tuberculosis variant africanum Actinobacteria Non vr
Mycobacterium tuberculosis variant bovis Actinobacteria Unlikely +
Mycobacteroides abscessus subsp. bolletii Actinobacteria Unlikely +
Mycolicibacterium aubagnense Actinobacteria Non +
Mycolicibacterium cosmeticum Actinobacteria Unlikely vr
Mycolicibacterium houstonense Actinobacteria Rare + neg
Mycolicibacterium mageritense Actinobacteria Unlikely +
Mycolicibacterium neoaurum Actinobacteria Rare +
Mycoplasma hominis Tenericutes Rare neg neg
Mycoplasma muris Tenericutes Rare neg
Mycoplasma pneumoniae Tenericutes Rare neg
Mycoplasmopsis arginini Tenericutes Unlikely neg
Mycoplasmopsis californica Tenericutes Unlikely neg
Myroides odoratimimus Bacteroidetes Unlikely neg
Myroides odoratus Bacteroidetes Unlikely neg
Nakamurella multipartita Actinobacteria Unlikely +
Nanosynbacter lyticus Candidatus Saccharibacteria Unlikely +
Natronorubrum bangense Euryarchaeota Non neg
Nautilia nitratireducens Proteobacteria Unlikely neg
Ndongobacter massiliensis Firmicutes Unlikely neg
Necropsobacter rosorum Proteobacteria Rare neg neg neg
Negativibacillus massiliensis Firmicutes Minor neg + +
Negativicoccus massiliensis Firmicutes Rare neg
Negativicoccus succinicivorans Firmicutes Rare neg
Neglecta timonensis Firmicutes Rare +
Neisseria bacilliformis Proteobacteria Rare neg
Neisseria canis Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neisseria cinerea Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg
Neisseria elongata Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg
Neisseria flava Proteobacteria Rare neg neg neg neg neg neg neg neg
Neisseria flavescens Proteobacteria Minor neg neg neg neg neg neg neg neg neg neg
Neisseria gonorrhoeae Proteobacteria Non neg neg neg neg neg neg neg neg neg
Neisseria lactamica Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg
Neisseria macacae Proteobacteria Rare neg neg neg neg neg neg neg neg
Neisseria meningitidis Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg
Neisseria mucosa Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg
Neisseria oralis Proteobacteria Rare neg neg
Neisseria perflava Proteobacteria Rare neg neg neg neg neg neg neg neg neg neg
Neisseria polysaccharea Proteobacteria Rare neg
Neisseria shayeganii Proteobacteria Rare neg neg
Neisseria sicca Proteobacteria Rare neg neg d neg neg neg neg neg neg
Neisseria subflava Proteobacteria Rare neg neg neg neg neg neg neg neg neg
Neoactinobaculum massilliense Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Neobacillus bataviensis Firmicutes Rare + d neg neg neg d d + w
Neobacillus fumarioli Firmicutes Unlikely + neg neg neg neg d neg neg w neg
Neobacillus jeddahensis Firmicutes Rare + neg neg neg neg neg neg neg + neg
Neobacillus massiliamazoniensis Firmicutes Rare + neg neg neg neg neg neg neg + neg
Neobacillus niacini Firmicutes Rare + d(+) neg neg neg d(+) d(+) + d(+)
Neobacillus pocheonensis Firmicutes Unlikely +
Neobacillus soli Firmicutes Rare + neg neg neg neg neg + neg
Neobittarella massiliensis Firmicutes Moderate +
Neofamilia massiliensis Firmicutes Rare
Nesterenkonia massiliensis Actinobacteria Rare + neg
Nevskia ramosa Proteobacteria Unlikely neg
Niallia nealsonii Firmicutes Rare + + + + neg + neg neg + +
Niameybacter massiliensis Firmicutes Rare +
Nigerium massiliense Actinobacteria Rare +
Nitriliruptor alkaliphilus Actinobacteria Unlikely +
Nitrosomonas eutropha Proteobacteria Rare neg
Nocardia asteroides Actinobacteria Rare + +
Nocardia brevicatena Actinobacteria Rare + neg
Nocardia cyriacigeorgica Actinobacteria Rare +
Nocardia mangyaensis Actinobacteria Unlikely +
Nocardia otitidiscaviarum Actinobacteria Rare +
Nocardioides jensenii Actinobacteria Unlikely +
Nocardioides kribbensis Actinobacteria Unlikely +
Nocardioides massiliensis Actinobacteria Unlikely + neg neg neg neg neg neg
Nosocomiicoccus massiliensis Firmicutes Rare +
Noviherbaspirillum massiliense Proteobacteria Rare neg
Novosphingobium capsulatum Proteobacteria Unlikely neg + neg
Numidum massiliense Firmicutes Rare +
Obesumbacterium proteus Proteobacteria Rare neg
Oceanidesulfovibrio marinus Proteobacteria Unlikely neg
Oceanithermus profundus Deinococcus-Thermus Unlikely neg
Oceanobacillus caeni Firmicutes Rare + +
Oceanobacillus iheyensis Firmicutes Unlikely +
Oceanobacillus jeddahense Firmicutes Rare +
Oceanobacillus manasiensis Firmicutes Rare + neg neg neg neg neg neg neg neg
Oceanobacillus massiliensis Firmicutes Rare + neg neg neg neg neg neg neg + +
Oceanobacillus oncorhynchi Firmicutes Non +
Oceanobacillus picturae Firmicutes Unlikely + neg w
Oceanobacillus senegalensis Firmicutes Unlikely +
Oceanobacillus sojae Firmicutes Rare + + neg neg neg neg neg neg + +
Oceanobacillus timonensis Firmicutes Unlikely +
Ochrobactrum anthropi Proteobacteria Unlikely neg +
Ochrobactrum intermedium Proteobacteria Unlikely neg +
Odoribacter laneus Bacteroidetes Minor neg neg
Odoribacter massiliensis Bacteroidetes Minor
Odoribacter splanchnicus Bacteroidetes Widespread neg
Oenococcus oeni Firmicutes Unlikely + d(+)
Oerskovia turbata Actinobacteria Rare + + + +
Okadaella gastrococcus Firmicutes Rare neg
Olegusella massiliensis Actinobacteria Rare + + +
Oleidesulfovibrio alaskensis Proteobacteria Rare neg
Oleidesulfovibrio vietnamensis Proteobacteria Rare neg
Oligella urethralis Proteobacteria Rare neg
Olsenella congonensis Actinobacteria Rare +
Olsenella massiliensis Actinobacteria Rare +
Olsenella phocaeensis Actinobacteria Rare +
Olsenella profusa Actinobacteria Rare + +
Olsenella timonensis Actinobacteria Rare +
Olsenella uli Actinobacteria Rare + d
Olsenella urininfantis Actinobacteria Rare +
Oribacterium asaccharolyticum Firmicutes Rare vr
Oribacterium parvum Firmicutes Rare vr neg
Oribacterium sinus Firmicutes Minor vr neg
Ornithinibacillus contaminans Firmicutes Unlikely +
Ornithinibacillus massiliensis Firmicutes Rare +
Ornithobacterium rhinotracheale Bacteroidetes Rare neg +
Oscillibacter massiliensis Firmicutes Rare neg
Oscillibacter ruminantium Firmicutes Rare neg neg
Oscillibacter valericigenes Firmicutes Minor neg neg neg
Oscillospira guillermondii Firmicutes Rare +
Ottowia massiliensis Pseudomonadota Rare neg
Oxalobacter formigenes Proteobacteria Moderate neg
Pacaella massiliensis Synergistetes Rare neg
Paenarthrobacter aurescens Actinobacteria Rare +
Paenarthrobacter ilicis Actinobacteria Non +
Paenibacillus alvei Firmicutes Unlikely + d(+) neg neg neg neg neg neg + +
Paenibacillus amylolyticus Firmicutes Rare +
Paenibacillus anaericanus Firmicutes Rare neg + neg neg neg + neg + + +
Paenibacillus antibioticophila Firmicutes Rare + + neg neg neg + + +
Paenibacillus azoreducens Firmicutes Rare vr +
Paenibacillus barcinonensis Firmicutes Unlikely + + + neg neg neg neg + + +
Paenibacillus barengoltzii Firmicutes Unlikely + neg neg
Paenibacillus borealis Firmicutes Unlikely neg + neg neg neg d(+) neg + + +
Paenibacillus bouchesdurhonensis Firmicutes Rare neg
Paenibacillus chibensis Firmicutes Unlikely + +
Paenibacillus chitinolyticus Firmicutes Rare vr
Paenibacillus cineris Firmicutes Rare vr + neg neg neg + w + + +
Paenibacillus cookii Firmicutes Unlikely vr + d neg d + d + d +
Paenibacillus daejeonensis Firmicutes Rare vr
Paenibacillus dendritiformis Firmicutes Rare neg
Paenibacillus donghaensis Firmicutes Unlikely + + neg neg neg neg neg + neg +
Paenibacillus durus Firmicutes Rare +
Paenibacillus faecis Firmicutes Rare + + + + + + +
Paenibacillus favisporus Firmicutes Rare vr
Paenibacillus glucanolyticus Firmicutes Rare neg +
Paenibacillus graminis Firmicutes Unlikely + + + neg neg + neg + + +
Paenibacillus ihuae Firmicutes Rare +
Paenibacillus ihumii Firmicutes Rare neg + neg neg neg + neg + + +
Paenibacillus illinoisensis Firmicutes Rare + +
Paenibacillus jamilae Firmicutes Rare vr + neg neg neg neg neg +
Paenibacillus kribbensis Firmicutes Rare vr + w neg neg w w + w +
Paenibacillus lactis Firmicutes Rare neg + d neg neg d neg d d d
Paenibacillus larvae Firmicutes Rare + neg neg neg neg neg neg +
Paenibacillus lautus Firmicutes Rare vr + neg neg neg + + + + +
Paenibacillus macerans Firmicutes Rare + + + d neg + d + d +
Paenibacillus motobuensis Firmicutes Rare neg
Paenibacillus mucilaginosus Firmicutes Unlikely neg
Paenibacillus naphthalenovorans Firmicutes Unlikely + neg neg neg neg d neg neg neg neg
Paenibacillus odorifer Firmicutes Unlikely +
Paenibacillus pabuli Firmicutes Rare +
Paenibacillus pasadenensis Firmicutes Rare +
Paenibacillus phocaensis Firmicutes Rare neg neg + + neg + neg neg + +
Paenibacillus polymyxa Firmicutes Rare neg + + neg neg + + neg +
Paenibacillus provencensis Firmicutes Rare neg w w neg neg w neg w + +
Paenibacillus pueri Firmicutes Rare + + + + neg neg neg +
Paenibacillus rhizosphaerae Firmicutes Unlikely +
Paenibacillus riograndensis Firmicutes Unlikely vr
Paenibacillus rubinfantis Firmicutes Rare neg
Paenibacillus sabinae Firmicutes Rare +
Paenibacillus senegalensis Firmicutes Rare neg + +
Paenibacillus senegalimassiliensis Firmicutes Rare vr
Paenibacillus stellifer Firmicutes Unlikely +
Paenibacillus thiaminolyticus Firmicutes Unlikely + +
Paenibacillus timonensis Firmicutes Rare + + + neg neg + neg neg + +
Paenibacillus tuaregi Firmicutes Rare vr
Paenibacillus typhae Firmicutes Rare + + neg neg neg + neg + + +
Paenibacillus urinalis Firmicutes Rare neg + w neg neg w neg + + +
Paenibacillus xylanilyticus Firmicutes Rare + +
Paeniclostridium ghonii Firmicutes Rare +
Paeniclostridium sordellii Firmicutes Minor + neg
Paenisporosarcina quisquiliarum Firmicutes Unlikely +
Paludibacter jiangxiensis Bacteroidetes Rare neg
Paludibacter propionicigenes Bacteroidetes Unlikely neg
Paludibaculum fermentans Acidobacteria Unlikely neg
Paludicola psychrotolerans Firmicutes Rare +
Pannonibacter phragmitetus Proteobacteria Unlikely neg
Pantoea agglomerans Proteobacteria Minor neg neg +
Pantoea conspicua Proteobacteria Rare neg +
Pantoea eucalypti Proteobacteria Rare neg +
Pantoea rodasii Proteobacteria Unlikely neg + + +
Pantoea septica Proteobacteria Rare neg +
Pantoea vagans Proteobacteria Rare neg +
Papillibacter cinnamivorans Firmicutes Rare +
Parabacteroides bouchesdurhonensis Bacteroidetes Minor neg + + neg + + + + + +
Parabacteroides chinchillae Bacteroidetes Minor neg neg
Parabacteroides distasonis Bacteroidetes Widespread neg +
Parabacteroides faecis Bacteroidetes Rare neg neg
Parabacteroides goldsteinii Bacteroidetes Moderate neg
Parabacteroides gordonii Bacteroidetes Minor neg neg
Parabacteroides johnsonii Bacteroidetes Moderate neg neg
Parabacteroides massiliensis Bacteroidetes Rare neg neg neg neg + w neg + + +
Parabacteroides merdae Bacteroidetes Widespread neg d(+)
Parabacteroides pacaensis Bacteroidetes Rare neg neg neg neg neg + neg neg neg neg
Parabacteroides pekinense Bacteroidetes Rare neg neg
Parabacteroides provencensis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg
Parabacteroides timonensis Bacteroidetes Minor neg
Paraburkholderia fungorum Proteobacteria Rare neg
Paraburkholderia phytofirmans Proteobacteria Unlikely neg
Paracholeplasma brassicae Tenericutes Unlikely neg
Paraclostridium benzoelyticum Firmicutes Rare +
Paraclostridium bifermentans Firmicutes Moderate +
Paracoccus aminovorans Proteobacteria Rare neg
Paracoccus carotinifaciens Proteobacteria Unlikely neg
Paracoccus denitrificans Proteobacteria Rare neg
Paracoccus haeundaensis Proteobacteria Unlikely neg
Paracoccus marcusii Proteobacteria Non neg
Paracoccus marinus Proteobacteria Unlikely neg
Paracoccus sphaerophysae Proteobacteria Unlikely neg
Paracoccus yeei Proteobacteria Rare neg
Paraeggerthella hongkongensis Actinobacteria Rare +
Parafannyhessea umbonata Actinobacteria Unlikely + neg
Paraliobacillus quinghaiensis Firmicutes Non + +
Paramuribaculum intestinale Bacteroidetes Rare neg
Paraprevotella clara Bacteroidetes Moderate neg neg
Paraprevotella xylaniphila Bacteroidetes Moderate neg neg
Pararheinheimera texasensis Proteobacteria Rare neg
Parascardovia denticolens Actinobacteria Rare + neg +
Parasphingorhabdus flavimaris Proteobacteria Unlikely neg
Parasporobacterium paucivorans Firmicutes Rare neg
Parasutterella excrementihominis Proteobacteria Moderate neg
Parasutterella secunda Proteobacteria Rare neg
Paratractidigestivibacter faecalis Actinobacteria Rare + neg
Paremcibacter congregatus Proteobacteria Unlikely neg neg neg w neg neg neg neg + neg
Parolsenella catena Actinobacteria Rare + neg
Parolsenella massiliensis Actinobacteria Rare + neg
Parvibacter caecicola Actinobacteria Rare +
Parvimonas micra Firmicutes Moderate + neg
Pasteurella aerogenes Proteobacteria Rare neg neg neg
Pasteurella dagmatis Proteobacteria Rare neg
Pasteurella multocida Proteobacteria Rare neg neg neg
Paucilactobacillus oligofermentans Firmicutes Non + neg w neg neg neg neg neg w neg
Paucilactobacillus suebicus Firmicutes Unlikely + neg
Paucilactobacillus vaccinostercus Firmicutes Unlikely + neg + neg neg neg neg neg
Paucisalibacillus globulus Firmicutes Unlikely + + neg + neg neg neg + +
Pauljensenia bouchesdurhonensis Actinobacteria Minor +
Pauljensenia cellulosilytica Actinobacteria Rare +
Pauljensenia hongkongensis Actinobacteria Rare +
Pauljensenia keddieii Actinobacteria Minor +
Pauljensenia odontolyticus Actinobacteria Rare +
Pauljensenia turicensis Actinobacteria Rare +
Pectobacterium wasabiae Proteobacteria Unlikely neg neg neg neg + +
Pediococcus acidilactici Firmicutes Rare + + neg neg neg neg neg neg neg +
Pediococcus claussenii Firmicutes Rare
Pediococcus damnosus Firmicutes Unlikely + + neg neg neg neg neg neg neg +
Pediococcus pentosaceus Firmicutes Minor + + neg neg neg neg neg neg neg + d(+)
Pedobacter cryoconitis Proteobacteria Non neg
Pedobacter daejeonensis Proteobacteria Unlikely neg
Pedobacter panaciterrae Bacteroidetes Unlikely neg
Pedobacter terricola Bacteroidetes Non neg
Pedomicrobium ferrugineum Proteobacteria Rare neg
Pelistega indica Proteobacteria Rare neg
Pelobacter propionicus Proteobacteria Rare neg
Pelomonas aquatica Proteobacteria Rare neg
Pelomonas puraquae Proteobacteria Rare neg
Pelomonas saccharophila Proteobacteria Rare neg
Peptacetobacter hiranonis Firmicutes Minor + neg
Peptoclostridium acidaminophilum Firmicutes Unlikely +
Peptococcus niger Firmicutes Rare +
Peptoniphilus asaccharolyticus Firmicutes Minor + neg
Peptoniphilus catoniae Firmicutes Rare +
Peptoniphilus colimassiliensis Firmicutes Rare + neg neg neg neg neg neg neg w neg
Peptoniphilus duerdenii Firmicutes Rare +
Peptoniphilus gorbachii Firmicutes Rare +
Peptoniphilus grossensis Firmicutes Rare +
Peptoniphilus harei Firmicutes Minor +
Peptoniphilus indolicus Firmicutes Rare +
Peptoniphilus ivorii Firmicutes Rare +
Peptoniphilus koenoeneniae Firmicutes Rare +
Peptoniphilus lacrimalis Firmicutes Minor + neg
Peptoniphilus obesi Firmicutes Rare +
Peptoniphilus pacaensis Firmicutes Rare + neg neg + neg
Peptoniphilus phoceensis Firmicutes Rare + neg neg + neg neg neg neg neg neg
Peptoniphilus senegalensis Firmicutes Rare +
Peptoniphilus timonensis Firmicutes Rare +
Peptostreptococcus anaerobius Firmicutes Moderate + neg
Peptostreptococcus russellii Firmicutes Rare +
Peptostreptococcus stomatis Firmicutes Minor + neg neg
Peribacillus psychrosaccharolyticus Firmicutes Unlikely vr d
Peribacillus simplex Firmicutes Rare vr neg neg neg neg neg neg neg w neg
Petrimonas mucosa Bacteroidetes Unlikely neg
Petrimonas sulfuriphila Bacteroidetes Rare neg
Petrobacter succinatimandens Proteobacteria Rare neg
Petrocella atlantisensis Firmicutes Unlikely +
Phascolarctobacterium faecium Firmicutes Minor neg
Phascolarctobacterium succinatutens Firmicutes Moderate neg neg
Phenylobacterium falsum Proteobacteria Unlikely neg
Phenylobacterium haematophilum Proteobacteria Rare neg
Phenylobacterium lituiforme Proteobacteria Unlikely neg
Phocaeicola barnesiae Bacteroidetes Moderate neg +
Phocaeicola coprocola Bacteroidetes Widespread neg +
Phocaeicola coprophilus Bacteroidetes Widespread neg neg
Phocaeicola dorei Bacteroidetes Widespread neg neg
Phocaeicola massiliensis Bacteroidetes Minor neg neg neg + neg
Phocaeicola paurosaccharolyticus Bacteroidetes Rare neg
Phocaeicola plebeius Bacteroidetes Widespread neg
Phocaeicola salanitronis Bacteroidetes Minor neg w
Phocaeicola sartorii Bacteroidetes Moderate neg neg
Phocaeicola vulgatus Bacteroidetes Widespread neg neg neg
Phocea massiliensis Firmicutes Minor neg
Phoenicibacter congonensis Actinobacteria Rare + + + + + + + + +
Phyllobacterium myrsinacearum Proteobacteria Rare neg
Pigmentiphaga kullae Proteobacteria Rare neg neg neg
Planococcus massiliensis Firmicutes Unlikely +
Planococcus rifietoensis Firmicutes Unlikely +
Planomicrobium chinense Firmicutes Unlikely +
Planomicrobium koreense Firmicutes Unlikely + neg neg neg + neg neg neg neg neg
Planomicrobium okeanokoites Firmicutes Unlikely + neg neg neg + neg neg neg neg
Plesiomonas shigelloides Proteobacteria Rare neg neg
Pluralibacter gergoviae Proteobacteria Rare neg neg +
Pontibacillus litoralis Firmicutes Rare + neg
Porphyromonas asaccharolytica Bacteroidetes Minor neg neg
Porphyromonas bennonis Bacteroidetes Rare neg
Porphyromonas cangingivalis Bacteroidetes Unlikely neg neg
Porphyromonas canoris Bacteroidetes Rare neg neg
Porphyromonas crevioricanis Bacteroidetes Unlikely neg neg
Porphyromonas endodontalis Bacteroidetes Minor neg
Porphyromonas gingivalis Bacteroidetes Unlikely neg neg
Porphyromonas levii Bacteroidetes Rare neg neg
Porphyromonas macacae Bacteroidetes Rare neg neg
Porphyromonas somerae Bacteroidetes Minor neg neg
Porphyromonas uenonis Bacteroidetes Minor neg
Pragia fontium Proteobacteria Rare neg d
Prevotella albensis Bacteroidetes Rare neg + neg neg neg neg +
Prevotella amnii Bacteroidetes Rare neg neg
Prevotella aurantiaca Bacteroidetes Rare neg neg
Prevotella baroniae Bacteroidetes Rare neg +
Prevotella bergensis Bacteroidetes Moderate neg +
Prevotella bivia Bacteroidetes Moderate neg neg
Prevotella brevis Bacteroidetes Minor neg neg neg neg neg w neg
Prevotella bryantii Bacteroidetes Rare neg neg neg neg +
Prevotella buccae Bacteroidetes Minor neg +
Prevotella buccalis Bacteroidetes Minor neg +
Prevotella conceptionensis Bacteroidetes Rare neg
Prevotella copri Bacteroidetes Widespread neg +
Prevotella corporis Bacteroidetes Moderate neg neg
Prevotella dentalis Bacteroidetes Minor neg neg
Prevotella dentasini Bacteroidetes Rare neg neg
Prevotella denticola Bacteroidetes Minor neg neg
Prevotella disiens Bacteroidetes Minor neg neg
Prevotella enoeca Bacteroidetes Rare neg neg
Prevotella falsenii Bacteroidetes Rare
Prevotella fusca Bacteroidetes Unlikely neg w
Prevotella herbatica Bacteroidetes Unlikely neg
Prevotella histicola Bacteroidetes Rare neg neg
Prevotella ihumii Bacteroidetes Rare neg neg neg neg + neg neg neg neg neg
Prevotella intermedia Bacteroidetes Minor neg neg
Prevotella jejuni Bacteroidetes Rare neg neg
Prevotella lascolaii Bacteroidetes Minor neg + +
Prevotella loescheii Bacteroidetes Rare neg d(neg)
Prevotella maculosa Bacteroidetes Rare neg +
Prevotella marseillensis Bacteroidetes Rare neg + + neg + + + + + neg
Prevotella marshii Bacteroidetes Rare neg neg
Prevotella melaninogenica Bacteroidetes Moderate neg neg
Prevotella merdae Bacteroidetes Rare neg
Prevotella micans Bacteroidetes Rare neg +
Prevotella multiformis Bacteroidetes Rare neg neg
Prevotella multisaccharivorax Bacteroidetes Minor neg d
Prevotella nanceiensis Bacteroidetes Rare neg neg
Prevotella nigrescens Bacteroidetes Minor neg neg
Prevotella oralis Bacteroidetes Minor neg d(+)
Prevotella oris Bacteroidetes Moderate neg
Prevotella oryzae Bacteroidetes Unlikely neg
Prevotella oulorum Bacteroidetes Rare neg neg
Prevotella pallens Bacteroidetes Rare neg neg
Prevotella paludivivens Bacteroidetes Rare neg
Prevotella phocaeensis Bacteroidetes Rare neg neg neg + + neg neg neg neg +
Prevotella pleuritidis Bacteroidetes Rare neg neg
Prevotella rara Bacteroidetes Rare neg neg
Prevotella rectalis Bacteroidetes Rare neg neg neg neg neg neg neg neg neg neg
Prevotella ruminicola Bacteroidetes Minor neg + +
Prevotella saccharolytica Bacteroidetes Rare neg +
Prevotella salivae Bacteroidetes Rare neg +
Prevotella scopos Bacteroidetes Unlikely neg neg
Prevotella seregens Bacteroidetes Rare
Prevotella shahii Bacteroidetes Rare neg neg
Prevotella stercorea Bacteroidetes Moderate neg neg
Prevotella timonensis Bacteroidetes Minor neg w neg
Prevotella veroralis Bacteroidetes Minor neg neg
Prevotellamassilia timonensis Bacteroidetes Minor neg
Priestia flexa Firmicutes Rare vr d(+)
Priestia koreensis Firmicutes Unlikely +
Priestia megaterium Firmicutes Rare + d d(+) neg neg neg neg neg + +
Prochlorococcus marinus Cyanobacteria Rare neg
Prolixibacter bellariivorans Bacteroidetes Unlikely neg + + +
Propionibacterium acidifaciens Actinobacteria Rare + neg
Propionibacterium freudenreichii Actinobacteria Rare + neg neg
Propionimicrobium lymphophilum Actinobacteria Rare neg neg
Prosthecobacter fluviatilis Verrucomicrobia Rare neg
Proteiniphilum saccharofermentans Bacteroidetes Unlikely neg
Proteus mirabilis Proteobacteria Moderate neg neg neg
Proteus penneri Proteobacteria Rare neg neg + neg
Proteus vulgaris Proteobacteria Rare neg neg d(+)
Provencibacterium massiliense Firmicutes Moderate neg
Providencia alcalifaciens Proteobacteria Minor neg neg neg neg
Providencia heimbachae Proteobacteria Rare neg neg neg
Providencia rettgeri Proteobacteria Minor neg neg neg d
Providencia rustigianii Proteobacteria Rare neg neg neg neg
Providencia stuartii Proteobacteria Rare neg neg neg neg
Pseudarthrobacter oxydans Actinobacteria Rare +
Pseudarthrobacter polychromogenes Actinobacteria Unlikely vr
Pseudescherichia vulneris Proteobacteria Rare neg d(neg) d(neg)
Pseudobutyrivibrio ruminis Firmicutes Rare neg
Pseudobutyrivibrio xylanivorans Firmicutes Unlikely neg
Pseudochrobactrum asaccharolyticum Proteobacteria Rare neg
Pseudochrobactrum saccharolyticum Proteobacteria Rare neg
Pseudocitrobacter anthropi Proteobacteria Rare neg +
Pseudocitrobacter faecalis Proteobacteria Rare neg +
Pseudoclavibacter alba Actinobacteria Rare +
Pseudoclavibacter helvolus Actinobacteria Unlikely +
Pseudoclavibacter sp. Timone Actinobacteria Rare +
Pseudoclostridium thermosuccinogenes Firmicutes Unlikely neg
Pseudodesulfovibrio aespoeensis Proteobacteria Unlikely neg
Pseudodesulfovibrio indicus Proteobacteria Unlikely neg
Pseudoflavonifractor capillosus Firmicutes Moderate neg neg
Pseudoglutamicibacter albus Actinobacteria Rare +
Pseudoglutamicibacter cumminsii Actinobacteria Unlikely +
Pseudomonas aeruginosa Proteobacteria Rare neg neg
Pseudomonas alcaligenes Proteobacteria Non neg
Pseudomonas alcaliphila Proteobacteria Rare neg
Pseudomonas asiatica Proteobacteria Rare neg
Pseudomonas asplenii Proteobacteria Unlikely neg neg + neg neg neg neg neg neg neg
Pseudomonas boreopolis Proteobacteria Non neg neg +
Pseudomonas caricapapayae Proteobacteria Non neg
Pseudomonas chlororaphis Proteobacteria Non neg
Pseudomonas citronellolis Proteobacteria Rare neg
Pseudomonas fluorescens Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg
Pseudomonas fragi Proteobacteria Rare neg
Pseudomonas fulva Proteobacteria Rare neg
Pseudomonas gessardii Proteobacteria Non neg
Pseudomonas japonica Proteobacteria Non neg
Pseudomonas libanensis Proteobacteria Non neg
Pseudomonas lundensis Proteobacteria Non neg neg
Pseudomonas luteola Proteobacteria Unlikely neg + neg d(+)
Pseudomonas massiliensis Proteobacteria Non neg
Pseudomonas mendocina Proteobacteria Rare neg
Pseudomonas migulae Proteobacteria Non neg
Pseudomonas monteilii Proteobacteria Unlikely neg
Pseudomonas mosselii Proteobacteria Non neg
Pseudomonas nitroreducens Proteobacteria Unlikely neg
Pseudomonas oleovorans Proteobacteria Unlikely neg neg neg
Pseudomonas oryzihabitans Proteobacteria Unlikely neg neg
Pseudomonas parafulva Proteobacteria Unlikely neg
Pseudomonas protegens Proteobacteria Unlikely neg
Pseudomonas putida Biovar A Proteobacteria Rare neg neg
Pseudomonas putida Biovar B Proteobacteria Rare neg neg
Pseudomonas rhodesiae Proteobacteria Non neg
Pseudomonas saudiphocaensis Proteobacteria Rare neg
Pseudomonas straminea Proteobacteria Unlikely neg
Pseudomonas stutzeri Proteobacteria Unlikely neg neg
Pseudomonas taetrolens Proteobacteria Non neg
Pseudomonas tolaasii Proteobacteria Unlikely neg
Pseudomonas veronii Proteobacteria Rare neg
Pseudomonas weihenstephanensis Proteobacteria Unlikely neg
Pseudomonas xanthomarina Proteobacteria Non neg
Pseudomonas yamanorum Proteobacteria Unlikely neg neg + + neg neg neg neg + neg
Pseudomonas zhaodongensis Proteobacteria Unlikely neg
Pseudonocardia dioxanivorans Actinobacteria Unlikely + +
Pseudoprevotella muciniphila Bacteroidetes Rare neg
Pseudopropionibacterium massiliense Actinobacteria Rare + neg neg neg + neg neg neg + neg
Pseudoramibacter alactolyticus Firmicutes Rare + neg
Pseudoruegeria marinistellae Proteobacteria Rare neg
Pseudoruminococcus massiliensis Firmicutes Rare neg
Pseudoxanthomonas broegbernensis Proteobacteria Unlikely neg
Pseudoxanthomonas japonensis Proteobacteria Unlikely neg
Pseudoxanthomonas mexicana Proteobacteria Rare neg
Pseudoxanthomonas spadix Proteobacteria Rare neg
Pseudoxanthomonas suwonensis Proteobacteria Rare neg
Pseudoxanthomonas taiwanensis Proteobacteria Rare neg
Psychrobacter alimentarius Proteobacteria Unlikely +
Psychrobacter arenosus Proteobacteria Unlikely neg
Psychrobacter cibarius Proteobacteria Unlikely neg
Psychrobacter faecalis Proteobacteria Unlikely neg neg neg
Psychrobacter fulvigenes Proteobacteria Rare neg
Psychrobacter maritimus Proteobacteria Unlikely neg
Psychrobacter namhaensis Proteobacteria Unlikely neg
Psychrobacter phenylpyruvicus Proteobacteria Rare neg neg neg
Psychrobacter pulmonis Proteobacteria Unlikely neg
Pusillimonas faecalis Firmicutes Rare neg
Pygmaiobacter massiliensis Firmicutes Minor +
Pyramidobacter piscolens Synergistetes Minor neg
Rahnella aquatilis Proteobacteria Unlikely neg neg +
Ralstonia mannitolilytica Proteobacteria Rare neg neg neg
Ralstonia pickettii Biovar Va-1&2 Proteobacteria Rare neg neg neg
Raoultella ornithinolytica Proteobacteria Minor neg + + + + + +
Raoultella planticola Proteobacteria Rare neg + + + neg + +
Raoultella terrigena Proteobacteria Rare neg + + +
Raoultibacter massiliensis Actinobacteria Rare + + + neg + neg neg neg + +
Raoultibacter timonensis Actinobacteria Rare + + + neg neg neg neg + +
Rheinheimera perlucida Proteobacteria Unlikely neg neg neg neg neg neg neg neg + neg
Rhizobium metallidurans Proteobacteria Unlikely neg
Rhizorhabdus wittichii Proteobacteria Unlikely neg neg +
Rhodanobacter ginsenosidimutans Proteobacteria Unlikely neg
Rhodococcus erythropolis Actinobacteria Rare + neg neg
Rhodococcus hoagii Actinobacteria Rare +
Rhodococcus jostii Actinobacteria Non +
Rhodococcus opacus Actinobacteria Unlikely +
Rhodococcus qingshengii Actinobacteria Unlikely +
Rhodococcus rhodochrous Actinobacteria Rare +
Rhodoplanes serenus Proteobacteria Unlikely neg
Rhodothermus marinus Bacteroidetes Non neg
Riemerella columbina Bacteroidetes Rare neg
Rikenella microfusus Bacteroidetes Rare neg neg neg neg
Risungbinella massiliensis Firmicutes Rare + neg neg neg neg
Robertmurraya andreesenii Firmicutes Unlikely +
Robertmurraya kyonggiensis Firmicutes Rare + + + neg neg w neg neg w +
Robertmurraya massiliosenegalensis Firmicutes Rare + +
Robinsoniella peoriensis Firmicutes Rare +
Romboutsia hominis Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Romboutsia ilealis Firmicutes Rare vr neg neg neg neg neg neg neg neg neg
Romboutsia lituseburensis Firmicutes Minor + neg
Romboutsia maritimum Firmicutes Rare +
Romboutsia timonensis Firmicutes Moderate +
Romboutsia weinsteinii Firmicutes Rare +
Roseburia faecis Firmicutes Widespread vr
Roseburia hominis Firmicutes Widespread vr
Roseburia intestinalis Firmicutes Widespread vr
Roseburia inulinivorans Firmicutes Widespread vr
Roseobacter denitrificans Proteobacteria Non neg
Roseomonas gilardii Proteobacteria Rare neg neg
Roseomonas mucosa Proteobacteria Rare neg
Rossellomorea aquimaris Firmicutes Unlikely vr neg neg neg + neg neg neg neg neg
Rossellomorea marisflavi Firmicutes Rare vr + neg neg neg neg + neg neg +
Rossellomorea vietnamensis Firmicutes Rare + neg neg neg neg neg neg neg + neg
Rothia aeria Actinobacteria Minor + neg
Rothia dentocariosa Actinobacteria Minor + + vr neg
Rothia halotolerans Actinobacteria Unlikely + + w neg neg neg neg neg + +
Rothia koreensis Actinobacteria Rare +
Rothia kristinae Actinobacteria Rare +
Rothia mucilaginosa Actinobacteria Moderate + + vr neg +
Rothia terrae Actinobacteria Rare + neg
Rubeoparvulum massiliense Firmicutes Rare neg neg neg neg + neg neg neg + +
Rubinisphaera brasiliensis Planctomycetes Non neg
Rubneribacter badeniensis Actinobacteria Minor + neg
Rubrobacter xylanophilus Actinobacteria Non +
Rudanella lutea Bacteroidetes Unlikely neg
Ruminiclostridium cellobioparum Firmicutes Rare vr
Ruminiclostridium cellulolyticum Firmicutes Unlikely + neg
Ruminiclostridium herbifermentans Firmicutes Unlikely vr
Ruminiclostridium josui Firmicutes Rare + neg
Ruminococcus albus Firmicutes Moderate + neg
Ruminococcus bicirculans Firmicutes Moderate +
Ruminococcus bovis Firmicutes Unlikely + neg neg neg neg neg neg neg neg neg
Ruminococcus bromii Firmicutes Widespread + neg
Ruminococcus callidus Firmicutes Widespread + vr
Ruminococcus champanellensis Firmicutes Moderate +
Ruminococcus flavefaciens Firmicutes Moderate + neg
Ruminococcus gauvreauii Firmicutes Minor + neg
Ruminococcus gnavus Firmicutes Widespread + neg
Ruminococcus lactaris Firmicutes Widespread + neg
Ruminococcus phoceensis Firmicutes Rare +
Ruminococcus torques Firmicutes Widespread + vr
Rummeliibacillus pycnus Firmicutes Unlikely +
Rummeliibacillus stabekisii Firmicutes Rare +
Rummeliibacillus suwonensis Firmicutes Rare +
Ruoffia tabacinasalis Firmicutes Rare +
Ruthenibacterium lactatiformans Firmicutes Moderate neg +
Saccharibacillus brassicae Firmicutes Unlikely +
Saccharofermentans acetigenes Firmicutes Non + neg
Salimicrobium jeotgali Firmicutes Non +
Salinicoccus halodurans Firmicutes Unlikely + neg neg neg + neg neg neg + neg
Salinisphaera halophila Proteobacteria Non neg neg neg neg + neg neg neg neg neg
Salinivibrio costicola Proteobacteria Rare neg +
Salmonella bongori Proteobacteria Rare neg
Salmonella enterica Proteobacteria Unlikely neg +
Salmonella enterica subsp. arizonae Proteobacteria Non neg neg neg neg
Salmonella enterica subsp. enterica serovar Choleraesuis Proteobacteria Unlikely neg neg neg neg
Salmonella enterica subsp. enterica serovar Enteritidis Proteobacteria Rare neg neg neg neg
Salmonella enterica subsp. enterica serovar Paratyphi A Proteobacteria Rare neg neg neg neg
Salmonella enterica subsp. enterica serovar Typhi Proteobacteria Rare neg neg neg neg
Salmonella enterica subsp. enterica serovar Typhimurium Proteobacteria Rare neg neg neg neg
Sanguibacter massiliensis Actinobacteria Rare +
Sarcina maxima Firmicutes Rare +
Sarcina ventriculi Firmicutes Minor +
Scardovia inopinata Actinobacteria Rare + + neg neg neg neg neg neg neg +
Scardovia wiggsiae Actinobacteria Minor + d
Schaalia cardiffensis Actinobacteria Rare + neg neg
Schaalia hyovaginalis Actinobacteria Rare + + neg d + +
Schaalia meyeri Actinobacteria Rare + neg
Schaalia odontolytica Actinobacteria Moderate + neg
Schaalia radingae Actinobacteria Rare + vr
Schaalia turicensis Actinobacteria Rare + d
Schleiferilactobacillus harbinensis Firmicutes Unlikely + + + w w + neg d +
Schleiferilactobacillus perolens Firmicutes Unlikely + + + d d + d neg + d
Schleiferilactobacillus shenzhenensis Firmicutes Unlikely
Schlesneria paludicola Planctomycetes Unlikely neg
Schnuerera ultunensis Firmicutes Unlikely +
Sebaldella termitidis Fusobacteria Unlikely neg
Sediminibacillus massiliensis Firmicutes Rare +
Sediminispirochaeta smaragdinae Spirochaetes Unlikely neg
Selenomonas artemidis Firmicutes Rare neg neg
Selenomonas bovis Firmicutes Rare neg
Selenomonas flueggei Firmicutes Rare neg neg
Selenomonas infelix Firmicutes Rare neg neg
Selenomonas noxia Firmicutes Rare neg neg
Selenomonas ruminantium Firmicutes Minor neg neg
Selenomonas sputigena Firmicutes Rare neg neg
Selenomonas timonae Firmicutes Unlikely neg
Sellimonas intestinalis Firmicutes Minor +
Senegalia massiliensis Firmicutes Rare + + + + neg neg + +
Senegalimassilia anaerobia Actinobacteria Minor + neg neg neg neg neg neg neg neg neg
Senegalimassilia faecalis Actinobacteria Rare + neg neg neg neg neg neg neg neg neg
Serratia ficaria Proteobacteria Rare neg + neg neg + + neg neg + +
Serratia fonticola Proteobacteria Rare neg neg + +
Serratia liquefaciens Proteobacteria Rare neg + neg +
Serratia marcescens Proteobacteria Minor neg + + vr + neg neg neg + +
Serratia odorifera Proteobacteria Rare neg neg +
Serratia quinivorans Proteobacteria Rare neg neg
Serratia ureilytica Proteobacteria Rare neg
Sharpea azabuensis Firmicutes Rare + d
Shewanella algae Proteobacteria Unlikely neg neg
Shewanella carassii Proteobacteria Rare neg
Shewanella decolorationis Proteobacteria Rare neg
Shewanella xiamenensis Proteobacteria Rare neg
Shigella boydii Proteobacteria Rare neg neg
Shigella dysenteriae Proteobacteria Unlikely neg neg neg
Shigella flexneri Proteobacteria Minor neg neg neg neg
Shigella sonnei Proteobacteria Minor neg vr neg neg
Shuttleworthia satelles Firmicutes Rare + +
Silanimonas lenta Proteobacteria Non neg
Skermanella aerolata Proteobacteria Unlikely neg neg neg neg neg neg neg neg neg neg
Slackia equolifaciens Actinobacteria Rare + neg
Slackia exigua Actinobacteria Rare + neg
Slackia faecicanis Actinobacteria Rare +
Slackia heliotrinireducens Actinobacteria Rare +
Slackia isoflavoniconvertens Actinobacteria Rare +
Slackia piriformis Actinobacteria Minor +
Sneathia sanguinegens Fusobacteria Rare neg neg +
Sneathia vaginalis Fusobacteria Rare neg
Sodaliphilus pleomorphus Bacteroidetes Rare neg
Soleaferrea massiliensis Firmicutes Rare +
Solibacillus silvestris Firmicutes Unlikely +
Solibaculum mannosilyticum Firmicutes Rare vr neg
Solobacterium moorei Firmicutes Minor + neg neg
Sorangium cellulosum Proteobacteria Rare neg
Sphaerotilus natans Proteobacteria Unlikely neg
Sphingobacterium alimentarium Bacteroidetes Unlikely neg
Sphingobacterium faecium Bacteroidetes Rare neg + neg neg neg + + neg + +
Sphingobacterium mizutaii Bacteroidetes Unlikely neg neg +
Sphingobacterium multivorum Bacteroidetes Rare neg neg +
Sphingobacterium nematocida Bacteroidetes Unlikely neg + neg neg neg neg neg neg neg +
Sphingobacterium siyangense Bacteroidetes Rare neg
Sphingobacterium spiritivorum Bacteroidetes Rare neg + + neg + + d +
Sphingobacterium thalpophilum Bacteroidetes Unlikely neg neg neg +
Sphingobium xenophagum Proteobacteria Unlikely neg neg neg
Sphingomonas adhaesiva Proteobacteria Unlikely neg neg neg
Sphingomonas aerolata Proteobacteria Non neg
Sphingomonas aestuarii Proteobacteria Unlikely neg
Sphingomonas azotifigens Proteobacteria Rare neg neg
Sphingomonas bisphenolicum Proteobacteria Unlikely neg
Sphingomonas echinoides Proteobacteria Unlikely neg neg neg
Sphingomonas glacialis Proteobacteria Unlikely neg
Sphingomonas hankookensis Proteobacteria Rare neg
Sphingomonas koreensis Proteobacteria Unlikely neg neg neg
Sphingomonas melonis Proteobacteria Rare neg neg neg
Sphingomonas panni Proteobacteria Rare neg neg neg
Sphingomonas paucimobilis Proteobacteria Rare neg neg +
Sphingomonas pseudosanguinis Proteobacteria Rare neg
Sphingomonas sinipercae Proteobacteria Unlikely neg neg + neg
Sphingomonas yabuuchiae Proteobacteria Rare neg
Sphingopyxis bauzanensis Proteobacteria Unlikely neg
Spiribacter roseus Proteobacteria Non neg
Spirochaeta coccoides Spirochaetes Rare neg
Spirochaeta thermophila Spirochaetes Non neg
Spirosoma linguale Bacteroidetes Unlikely neg +
Sporobacter termitidis Firmicutes Rare +
Sporolactobacillus laevolacticus Firmicutes Unlikely + neg
Sporolactobacillus nakayamae subsp. racemicus Firmicutes Rare + d d
Sporomusa termitida Firmicutes Unlikely neg
Sporosarcina aquimarina Firmicutes Non + neg neg neg + neg neg neg + neg
Sporosarcina koreensis Firmicutes Unlikely +
Sporosarcina luteola Firmicutes Rare vr neg neg neg neg + neg neg neg neg
Sporosarcina siberiensis Firmicutes Unlikely + neg neg + + neg neg neg + +
Stackebrandtia nassauensis Actinobacteria Unlikely + + neg +
Staphylococcus arlettae Firmicutes Rare + + neg
Staphylococcus aureus subsp. aureus Firmicutes Minor + + vr
Staphylococcus auricularis Firmicutes Rare + vr neg
Staphylococcus capitis subsp. capitis Firmicutes Rare + + neg neg
Staphylococcus caprae Firmicutes Rare + neg neg neg
Staphylococcus carnosus Firmicutes Rare + neg neg neg neg neg neg neg w neg
Staphylococcus cohnii subsp. cohnii Firmicutes Rare + vr neg neg
Staphylococcus condimenti Firmicutes Rare + +
Staphylococcus devriesei Firmicutes Rare + neg
Staphylococcus epidermidis Firmicutes Widespread + vr neg d neg
Staphylococcus equorum subsp. equorum Firmicutes Rare + + neg
Staphylococcus gallinarum Firmicutes Rare + + +
Staphylococcus haemolyticus Firmicutes Minor + + neg
Staphylococcus hominis subsp. hominis Firmicutes Minor + + neg
Staphylococcus hyicus Firmicutes Rare + neg
Staphylococcus intermedius Firmicutes Rare + + + neg
Staphylococcus kloosii Firmicutes Rare + neg neg
Staphylococcus lugdunensis Firmicutes Rare + + neg
Staphylococcus nepalensis Firmicutes Rare + + neg neg neg neg neg neg + +
Staphylococcus pasteuri Firmicutes Minor + neg
Staphylococcus petrasii Firmicutes Rare + neg neg neg w neg neg neg neg neg
Staphylococcus pettenkoferi Firmicutes Rare + vr neg
Staphylococcus pseudintermedius Firmicutes Rare + neg neg neg neg neg neg + neg
Staphylococcus saccharolyticus Firmicutes Rare + neg neg neg neg
Staphylococcus saprophyticus subsp. saprophyticus Firmicutes Rare + + neg
Staphylococcus schleiferi subsp. schleiferi Firmicutes Rare + neg d
Staphylococcus simiae Firmicutes Rare + neg +
Staphylococcus simulans Firmicutes Rare + + neg
Staphylococcus succinus subsp. succinus Firmicutes Unlikely +
Staphylococcus warneri Firmicutes Minor + + neg neg
Staphylococcus xylosus Firmicutes Rare + + d(+)
Starkeya novella Proteobacteria Unlikely neg
Stenotrophomonas acidaminiphila Proteobacteria Unlikely neg
Stenotrophomonas bentonitica Proteobacteria Unlikely neg neg neg
Stenotrophomonas maltophilia Proteobacteria Minor neg neg
Stenotrophomonas rhizophila Proteobacteria Rare neg
Stomatobaculum longum Firmicutes Minor vr neg
Streptobacillus hongkongensis Fusobacteria Rare neg
Streptobacillus moniliformis Fusobacteria Unlikely neg
Streptococcus acidominimus Firmicutes Unlikely + neg neg neg neg neg neg
Streptococcus agalactiae Firmicutes Minor + neg neg neg neg + neg neg d + vr
Streptococcus alactolyticus Firmicutes Rare + d(neg) neg neg neg d(+) d(neg) neg neg + d(+)
Streptococcus anginosus Firmicutes Widespread + + neg neg neg + + neg neg + +
Streptococcus anginosus subsp. whileyi Firmicutes Rare + + + d d
Streptococcus australis Firmicutes Minor + neg neg neg neg neg neg neg neg + +
Streptococcus caballi Firmicutes Rare +
Streptococcus canis Firmicutes Unlikely + neg neg d(neg) d neg neg + +
Streptococcus castoreus Firmicutes Rare +
Streptococcus constellatus subsp. constellatus Firmicutes Minor + d(neg) + w(+)
Streptococcus cristatus Firmicutes Minor + vr neg + neg
Streptococcus danieliae Firmicutes Rare +
Streptococcus didelphis Firmicutes Rare + neg
Streptococcus downei Firmicutes Rare + +
Streptococcus dysgalactiae Firmicutes Rare + neg vr
Streptococcus dysgalactiae subsp. equisimilis Firmicutes Unlikely +
Streptococcus equi subsp. equi Firmicutes Rare + + +
Streptococcus equinus Firmicutes Moderate + + neg neg neg d(+) + neg neg + +
Streptococcus ferus Firmicutes Rare + d neg neg neg neg neg + +
Streptococcus gallolyticus subsp. gallolyticus Firmicutes Minor + + neg neg neg + + neg neg + +
Streptococcus gordonii Firmicutes Minor + + neg neg neg d(+) vr neg neg + +
Streptococcus gwangjuense Firmicutes Unlikely +
Streptococcus henryi Firmicutes Rare +
Streptococcus hyovaginalis Firmicutes Rare + neg neg neg neg neg neg + +
Streptococcus ilei Firmicutes Unlikely + neg neg neg + + neg neg d +
Streptococcus infantarius Firmicutes Minor + neg neg neg neg d(+) neg neg neg + +
Streptococcus infantarius subsp. infantarius Firmicutes Minor + d(neg)
Streptococcus infantis Firmicutes Minor + neg neg neg
Streptococcus intermedius Firmicutes Moderate + + d(+) + d(+)
Streptococcus koreensis Firmicutes Unlikely +
Streptococcus lactarius Firmicutes Rare +
Streptococcus lutetiensis Firmicutes Minor + + neg neg neg + vr neg neg + +
Streptococcus macedonicus Firmicutes Rare + d(neg) neg neg neg neg neg neg + d(neg)
Streptococcus merionis Firmicutes Rare +
Streptococcus mitis Firmicutes Moderate + neg neg neg neg neg neg neg neg + d(neg)
Streptococcus mutans Firmicutes Moderate + + neg neg neg neg vr neg neg + +
Streptococcus oralis Firmicutes Minor + neg neg neg neg neg neg neg neg + neg
Streptococcus oralis subsp. tigurinus Firmicutes Rare +
Streptococcus orisratti Firmicutes Rare + + +
Streptococcus ovis Firmicutes Rare +
Streptococcus pantholopis Firmicutes Rare + + neg neg neg neg neg neg + +
Streptococcus parasanguinis Firmicutes Widespread + d(+) neg neg neg d(+) neg neg neg + d(+)
Streptococcus parasuis Firmicutes Rare +
Streptococcus parauberis Firmicutes Rare + + neg neg neg neg + neg neg + +
Streptococcus pasteurianus Firmicutes Minor + + +
Streptococcus periodonticum Firmicutes Unlikely +
Streptococcus peroris Firmicutes Rare + neg neg neg
Streptococcus pluranimalium Firmicutes Unlikely + d neg neg neg neg neg neg d(+)
Streptococcus plurextorum Firmicutes Rare + neg neg w neg neg w
Streptococcus pneumoniae Firmicutes Minor + neg d(+) vr d(+) d(+)
Streptococcus porci Firmicutes Rare + + neg neg neg neg + + +
Streptococcus pseudopneumoniae Firmicutes Minor + neg
Streptococcus pseudoporcinus Firmicutes Rare + +
Streptococcus pyogenes Firmicutes Minor + neg neg neg neg + vr neg neg + vr
Streptococcus rubneri Firmicutes Rare + neg neg neg neg neg neg + +
Streptococcus salivarius Firmicutes Widespread + + neg neg neg d(+) vr neg neg + +
Streptococcus sanguinis Firmicutes Moderate + d neg neg neg d(+) vr neg neg + +
Streptococcus sinensis Firmicutes Rare + +
Streptococcus sobrinus Firmicutes Minor + neg neg neg neg neg neg neg
Streptococcus suis Firmicutes Rare + neg neg neg neg d(+) vr neg neg + +
Streptococcus thermophilus Firmicutes Widespread + d(+) neg neg neg neg neg neg
Streptococcus thoraltensis Firmicutes Rare + + neg neg neg d(+) + neg neg + +
Streptococcus timonensis Firmicutes Minor + neg neg neg neg neg neg neg neg neg
Streptococcus uberis Firmicutes Rare + + neg neg neg d(+) + neg neg + +
Streptococcus vestibularis Firmicutes Moderate + vr neg neg neg d(+) vr neg neg vr +
Streptococcus viridans Firmicutes Rare +
Streptomyces albus Actinobacteria Unlikely +
Streptomyces flavogriseus Actinobacteria Unlikely +
Streptomyces hygroscopicus Actinobacteria Unlikely +
Streptomyces koyangensis Actinobacteria Rare +
Streptomyces lividans Actinobacteria Unlikely +
Streptomyces massiliensis Actinobacteria Unlikely +
Streptomyces misionensis Actinobacteria Rare +
Streptomyces specialis Actinobacteria Unlikely +
Streptomyces thermoviolaceus Actinobacteria Rare +
Streptomyces thermovulgaris Actinobacteria Unlikely +
Streptomyces violaceusniger Actinobacteria Unlikely +
Streptosporangium roseum Actinobacteria Unlikely +
Subdoligranulum formicile Firmicutes Rare neg
Subdoligranulum variabile Firmicutes Moderate neg
Succinatimonas hippei Proteobacteria Minor neg neg
Succinivibrio dextrinosolvens Proteobacteria Rare neg neg
Sulfurospirillum deleyianum Proteobacteria Rare neg
Sutcliffiella cohnii Firmicutes Unlikely + neg neg
Sutterella faecalis Proteobacteria Rare neg neg
Sutterella massiliensis Proteobacteria Rare neg
Sutterella megalosphaeroides Proteobacteria Rare neg
Sutterella parvirubra Proteobacteria Minor neg
Sutterella seckii Proteobacteria Rare neg
Sutterella stercoricanis Proteobacteria Rare neg
Sutterella timonensis Proteobacteria Rare neg
Sutterella wadsworthensis Proteobacteria Widespread neg neg neg
Symbiobacterium thermophilum Firmicutes Unlikely neg
Symbiobacterium toebii Firmicutes Unlikely neg
Syntrophobotulus glycolicus Firmicutes Unlikely neg
Syntrophococcus sucromutans Firmicutes Rare neg
Syntrophomonas zehnderi Firmicutes Rare vr
Tannerella forsythia Bacteroidetes Minor neg + +
Tannerella serpentiformis Bacteroidetes Unlikely neg
Taonella mepensis Proteobacteria Unlikely neg
Tatumella ptyseos Proteobacteria Rare neg neg d
Tepidanaerobacter acetatoxydans Firmicutes Rare vr
Tepiditoga spiralis Thermotogae Unlikely neg
Terrahaemophilus aromaticivorans Proteobacteria Rare neg
Terribacillus aidingensis Firmicutes Rare + + neg neg neg neg neg neg + neg
Terribacillus halophilus Firmicutes Unlikely +
Terrisporobacter glycolicus Firmicutes Minor +
Terrisporobacter mayombei Firmicutes Rare + +
Terrisporobacter othiniensis Firmicutes Rare +
Terrisporobacter petrolearius Firmicutes Rare +
Tessaracoccus massiliensis Actinobacteria Rare +
Tetragenococcus halophilus Firmicutes Unlikely + + +
Tetragenococcus koreensis Firmicutes Rare + + + w neg neg neg neg + +
Tetragenococcus solitarius Firmicutes Rare + + + w neg neg neg neg + +
Thalassobacillus devorans Firmicutes Non +
Thauera terpenica Proteobacteria Rare neg
Thermaerobacter marianensis Firmicutes Non vr
Thermoanaerobacterium thermosaccharolyticum Firmicutes Rare neg +
Thermobacillus composti Firmicutes Unlikely neg
Thermobispora bispora Actinobacteria Unlikely +
Thermoclostridium stercorarium Firmicutes Unlikely neg +
Thermolithobacter ferrireducens Firmicutes Non +
Thermomonas carbonis Proteobacteria Unlikely neg
Thermomonospora curvata Actinobacteria Unlikely +
Thermophilibacter immobilis Actinobacteria Unlikely +
Thermophilibacter mediterraneus Actinobacteria Rare +
Thermophilibacter provencensis Actinobacteria Minor +
Thermus scotoductus Deinococcus-Thermus Unlikely neg
Thiomonas islandica Proteobacteria Unlikely neg
Thomasclavelia saccharogumia Firmicutes Rare +
Thomasclavelia spiroformis Firmicutes Moderate + neg neg d
Tidjanibacter inops Bacteroidetes Moderate
Tidjanibacter massiliensis Bacteroidetes Rare neg
Timonella senegalensis Actinobacteria Rare + + +
Tissierella praeacuta Firmicutes Rare +
Trabulsiella guamensis Proteobacteria Rare neg neg w
Tractidigestivibacter scatoligenes Actinobacteria Rare + +
Traorella massiliensis Firmicutes Rare neg neg neg neg + neg neg neg neg neg
Treponema berlinense Spirochaetes Rare neg
Treponema brennaborense Spirochaetes Unlikely neg
Treponema denticola Spirochaetes Rare neg
Treponema medium Spirochaetes Unlikely neg +
Treponema parvum Spirochaetes Unlikely neg
Treponema pectinovorum Spirochaetes Rare neg neg
Treponema pedis Spirochaetes Unlikely neg
Treponema peruense Spirochaetes Rare neg
Treponema phagedenis Spirochaetes Unlikely neg
Treponema primitia Spirochaetes Unlikely neg
Treponema ruminis Spirochaetes Unlikely neg
Treponema socranskii Spirochaetes Unlikely neg neg
Treponema succinifaciens Spirochaetes Rare neg
Treponema vincentii Spirochaetes Rare neg
Tropheryma whipplei Actinobacteria Unlikely neg
Trueperella bernardiae Actinobacteria Rare + neg neg + neg neg
Trueperella pyogenes Actinobacteria Rare + neg
Tsukamurella pulmonis Actinobacteria Unlikely +
Tumebacillus avium Firmicutes Unlikely + + +
Tumebacillus permanentifrigoris Firmicutes Unlikely +
Turicibacter sanguinis Firmicutes Moderate + +
Turicimonas muris Proteobacteria Rare neg neg
Tyzzerella nexilis Firmicutes Widespread +
Ureaplasma parvum Tenericutes Rare unk
Ureaplasma urealyticum Tenericutes Rare unk
Ureibacillus massiliensis Firmicutes Rare neg
Ureibacillus suwonensis Firmicutes Unlikely neg
Ureibacillus thermosphaericus Firmicutes Non neg neg neg neg neg neg neg neg neg
Urinicoccus timonensis Firmicutes Rare + neg neg neg + neg neg neg neg neg
Urmitella timonensis Firmicutes Rare +
Uruburuella suis Proteobacteria Rare neg
Vaginimicrobium propionicum Actinobacteria Unlikely + +
Vagococcus carniphilus Firmicutes Rare + +
Vagococcus fluvialis Firmicutes Rare + + neg neg d neg neg + +
Vagococcus lutrae Firmicutes Rare +
Vagococcus penaei Firmicutes Rare + neg
Vagococcus teuberi Firmicutes Rare + +
Vampirovibrio chlorellavorus Cyanobacteria Unlikely neg
Varibaculum cambriense Actinobacteria Rare + neg neg neg
Varibaculum timonense Actinobacteria Rare + +
Variovorax boronicumulans Proteobacteria Rare neg
Variovorax ginsengisoli Proteobacteria Unlikely neg
Variovorax paradoxus Proteobacteria Unlikely neg
Veillonella atypica Firmicutes Widespread neg neg
Veillonella denticariosi Firmicutes Rare neg
Veillonella dispar Firmicutes Moderate neg neg
Veillonella infantium Firmicutes Rare neg
Veillonella magna Firmicutes Rare neg
Veillonella montpellierensis Firmicutes Rare neg neg
Veillonella nakazawae Firmicutes Rare neg
Veillonella parvula Firmicutes Widespread neg neg neg
Veillonella ratti Firmicutes Rare neg
Veillonella rodentium Firmicutes Unlikely neg
Veillonella rogosae Firmicutes Minor neg
Veillonella tobetsuensis Firmicutes Minor neg
Vescimonas coprocola Firmicutes Rare neg
Vescimonas fastidiosa Firmicutes Rare neg
Vibrio alginolyticus Proteobacteria Rare neg neg neg
Vibrio cholerae Proteobacteria Unlikely neg neg neg
Vibrio cincinnatiensis Proteobacteria Rare neg + d +
Vibrio fluvialis Proteobacteria Rare neg neg neg neg
Vibrio furnissii Proteobacteria Rare neg neg neg neg
Vibrio metoecus Proteobacteria Rare neg
Vibrio metschnikovii Proteobacteria Rare neg neg d(neg)
Vibrio mimicus Proteobacteria Rare neg neg neg neg
Vibrio natriegens Proteobacteria Rare neg + d +
Vibrio neptunius Proteobacteria Unlikely neg
Vibrio parahaemolyticus Proteobacteria Rare neg neg neg neg
Vibrio proteolyticus Proteobacteria Rare neg neg neg
Vibrio rumoiensis Proteobacteria Unlikely neg
Vibrio vulnificus Proteobacteria Rare neg neg d
Victivallis vadensis Lentisphaerae Minor neg
Virgibacillus dakarensis Firmicutes Rare +
Virgibacillus dokdonensis Firmicutes Rare vr +
Virgibacillus doumboii Firmicutes Rare + neg
Virgibacillus halodenitrificans Firmicutes Rare vr neg
Virgibacillus ihumii Firmicutes Rare + neg neg neg neg neg neg neg neg neg
Virgibacillus massiliensis Firmicutes Rare +
Virgibacillus ndiopensis Firmicutes Rare + neg neg neg + neg neg neg neg neg
Virgibacillus pantothenticus Firmicutes Rare + + d neg d neg +
Virgibacillus profundi Firmicutes Unlikely vr w
Virgibacillus proomii Firmicutes Rare + + d(neg) neg neg d neg neg + +
Virgibacillus salexigens Firmicutes Unlikely +
Virgibacillus senegalensis Firmicutes Non +
Virgibacillus siamensis Firmicutes Unlikely + neg
Vitreoscilla massiliensis Proteobacteria Rare neg
Vitreoscilla stercoraria Proteobacteria Rare neg
Weeksella virosa Firmicutes Rare neg neg neg
Weissella cibaria Firmicutes Minor + + neg neg neg neg vr neg neg + +
Weissella confusa Firmicutes Minor + neg neg neg neg neg vr neg neg + vr
Weissella paramesenteroides Firmicutes Minor + neg + neg neg + neg neg + neg
Weissella viridescens Firmicutes Minor +
Weizmannia coagulans Firmicutes Rare + d d neg neg d d + d
Winkia neuii Actinobacteria Rare + d neg + d d d neg
Wolinella succinogenes Proteobacteria Rare neg
Xanthomonas massiliensis Proteobacteria Unlikely neg
Xylanimonas cellulosilytica Actinobacteria Rare + + +
Yangia pacifica Proteobacteria Non neg
Yersinia aldovae Proteobacteria Rare neg neg neg neg + +
Yersinia aleksiciae Proteobacteria Rare neg vr neg
Yersinia alsatica Proteobacteria Rare neg + + neg + neg neg + +
Yersinia artesiana Proteobacteria Rare neg + + + + neg neg neg + +
Yersinia bercovieri Proteobacteria Rare neg vr neg w
Yersinia enterocolitica subsp. enterocolitica Proteobacteria Unlikely neg d(+) vr neg neg neg + neg
Yersinia frederiksenii Proteobacteria Rare neg + vr neg neg neg + +
Yersinia intermedia Proteobacteria Rare neg + + neg neg + +
Yersinia kristensenii subsp. kristensenii Proteobacteria Rare neg + neg neg neg + neg
Yersinia kristensenii subsp. rochesterensis Proteobacteria Rare neg + neg
Yersinia massiliensis Proteobacteria Rare neg neg +
Yersinia mollaretii Proteobacteria Rare neg neg vr
Yersinia occitanica Proteobacteria Rare neg d + d + neg neg neg + neg
Yersinia pestis Proteobacteria Non neg neg d
Yersinia proxima Proteobacteria Rare neg + + neg + neg neg neg + +
Yersinia pseudotuberculosis Proteobacteria Unlikely neg + neg neg + d
Yersinia rohdei Proteobacteria Rare neg neg neg neg
Yersinia vastinensis Proteobacteria Rare neg + + neg + neg neg neg + +
Yokenella regensburgei Proteobacteria Rare neg neg + neg neg neg neg
Yonghaparkia alkaliphila Actinobacteria Non +
Zunongwangia profunda Bacteroidetes Non neg

Click on table headings to sort. Table abbreviations: Arbu - arbutin; EtOH - ethanol; Glct - gluconate; 2KG - 2-ketogluconate; 5KG - 5-ketogluconate; aMGlc - αmethylglucoside; bMGlc - βmethylglucoside; MDM - methylmannoside; MDX - methylxyloside; NAGA - N-acetylglucosamine; Sali - salicin;