Heterocycles, Vancomycins and Miscellaneous
FILTERS
Total 2651
Current 2651
Bacteria Phylum Coloniser Gram chlp fosf ison metr nitr ranb slfz slfd slfm sulf trim SXT1 SXT2 dalb teic vanc clin linc dapt mone novo coli polB fusi bile V129
Abiotrophia defectiva Firmicutes Minor + R(32/>32), W(0.125->32) M(0.016->256) S(0.25) S(≤0.03/0.5), W(≤0.03->32)
Absiella argi Firmicutes Rare +
Absiella innocuum Firmicutes Moderate
Absiella tortuosum Firmicutes Rare +
Acetanaerobacterium elongatum Firmicutes Rare +
Acetatifactor muris Firmicutes Rare +
Acetitomaculum ruminis Firmicutes Rare +
Acetivibrio cellulolyticus Firmicutes Rare neg
Acetivibrio clariflavus Firmicutes Unlikely vr
Acetivibrio ethanolgignens Firmicutes Minor neg
Acetivibrio saccincola Firmicutes Unlikely +
Acetivibrio thermocellus Firmicutes Unlikely neg
Acetoanaerobium sticklandii Firmicutes Rare +
Acetobacter pasteurianus Proteobacteria Unlikely neg
Acetobacterium woodii Firmicutes Rare +
Acetomicrobium hydrogeniformans Synergistetes Unlikely neg
Achromobacter denitrificans Proteobacteria Unlikely neg S
Achromobacter insuavis Proteobacteria Unlikely neg
Achromobacter spanius Proteobacteria Unlikely neg
Achromobacter xylosoxidans Proteobacteria Rare neg S R R R S R(>32/>32), W(4–>32) W(4-64) W(4-128) S
Acidaminococcus fermentans Firmicutes Widespread neg S(2/8), W(0.25–32) S(2/4), W(0.06–8) R(2048/>8,192), W(256–>8,192) M(0.25/>32), W(0.06->32) S(10) S
Acidaminococcus intestini Firmicutes Moderate neg S(4KB) R(5KB) S(10KB) S(d(+))
Acidaminococcus massiliensis Firmicutes Rare neg
Acidaminococcus provencensis Firmicutes Rare neg
Acidaminococcus timonensis Firmicutes Rare neg
Acidipropionibacterium acidipropionici Actinobacteria Rare +
Acidipropionibacterium jensenii Actinobacteria Rare +
Acidisarcina polymorpha Acidobacteria Rare neg R R S
Acidovorax facilis Proteobacteria Rare neg
Acidovorax sp. strain KKS102 Proteobacteria Rare neg
Acidovorax temperans Proteobacteria Rare neg
Acidovorax wautersii Proteobacteria Rare neg
Acinetobacter baumannii Proteobacteria Unlikely neg R R R R S R(>32/>32), W(4–>32)
Acinetobacter bereziniae Proteobacteria Unlikely neg R
Acinetobacter calcoaceticus Proteobacteria Rare neg R R R
Acinetobacter guillouiae Proteobacteria Rare neg d
Acinetobacter haemolyticus Proteobacteria Unlikely neg d
Acinetobacter idrijaensis Proteobacteria Rare
Acinetobacter johnsonii Proteobacteria Rare neg d
Acinetobacter junii Proteobacteria Rare neg M
Acinetobacter lwoffii Proteobacteria Unlikely neg S R(>32/>32), W(4–>32)
Acinetobacter parvus Proteobacteria Unlikely neg
Acinetobacter pittii Proteobacteria Unlikely neg R R R
Acinetobacter radioresistens Proteobacteria Rare neg R
Acinetobacter schindleri Proteobacteria Unlikely neg
Acinetobacter septicus Proteobacteria Unlikely neg S
Acinetobacter towneri Proteobacteria Unlikely neg
Acinetobacter ursingii Proteobacteria Unlikely neg R
Acinetobacter variabilis Proteobacteria Unlikely neg
Actinobacillus capsulatus Proteobacteria Rare neg
Actinobacillus minor Proteobacteria Unlikely neg
Actinobacillus pleuropneumoniae Proteobacteria Rare neg S
Actinobacillus succinogenes Proteobacteria Rare neg
Actinobacillus ureae Proteobacteria Non neg
Actinobaculum massiliense Actinobacteria Minor +
Actinomyces bouchesdurhonensis Actinobacteria Unlikely + R(50) R(4) R(25) R(30) S(15) R(50)
Actinomyces canis Actinobacteria Non +
Actinomyces dentalis Actinobacteria Non +
Actinomyces georgiae Actinobacteria Non + S
Actinomyces gerencseriae Actinobacteria Unlikely + R(>32/>32), W(0.25->32) S(0.5/1), W(0.125–1) S(0.12/0.25), W(0.03–0.5) M(2/32), W(0.03->32)
Actinomyces graevenitzii Actinobacteria Minor + S R R(>32/>32), W(0.25->32) R S(0.5/1), W(0.125–1) S(0.063-2) M(2/32), W(0.03->32)
Actinomyces ihuae Actinobacteria Rare + R(50KB) R(4KB) R(25KB) S(30KB) S(15KB) R(50KB)
Actinomyces israelii Actinobacteria Non + R(8/>32), W(≤0.03->32) S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.5-1) S(0.12/0.25), W(0.03–0.5) S(2/4), (0.5->32)
Actinomyces johnsonii Actinobacteria Rare +
Actinomyces marseillensis Actinobacteria Rare + S(30) S(15)
Actinomyces massiliensis Actinobacteria Rare +
Actinomyces mediterranea Actinobacteria Rare + S(50KB) R(4KB) R(25KB) S(30KB) S(15KB) R(50KB)
Actinomyces minihominis Actinobacteria Rare +
Actinomyces naeslundii Actinobacteria Minor + S R(8/>32), W(≤0.03->32) R S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25–1.0) M(0.125/>32), W(≤0.03->32) M(2/32), W(0.03->32)
Actinomyces oris Actinobacteria Rare +
Actinomyces pacaensis Actinobacteria Rare +
Actinomyces polynesiensis Actinobacteria Rare + S R R S S R S
Actinomyces provencensis Actinobacteria Rare +
Actinomyces sp. ph3 Actinobacteria Rare +
Actinomyces timonensis Actinobacteria Rare +
Actinomyces urogenitalis Actinobacteria Rare + R R(>256) R S(0.5) S(0.5/0.5), W(0.125-1) S(1/4), W(0.25-8)
Actinomyces viscosus Actinobacteria Minor + S R R(8/>32), W(≤0.03->32) R S(0.25/0.5), W(0.125–0.5) S(0.5/0.5), W(0.5-0.5) M(0.125/>32), W(≤0.03->32) S(4/8), W(0.5-8)
Actinosynnema mirum Actinobacteria Non +
Actinotignum schaalii Actinobacteria Rare + R(>256) R(32) S(0.125/0.5), W(0.063-1) M(0.064/64), W(<0.016->256)
Acutalibacter muris Firmicutes Rare +
Acutalibacter timonensis Firmicutes Minor
Adhaeribacter aquaticus Bacteroidetes Unlikely neg S S S
Adlercreutzia caecimuris Actinobacteria Rare + S(0.016) S(1.5) S(0.1)
Adlercreutzia equolifaciens Actinobacteria Moderate +
Adlercreutzia equolifaciens subsp. celatus Actinobacteria Rare +
Adlercreutzia hattorii Actinobacteria Rare +
Adlercreutzia mucosicola Actinobacteria Rare + S(0.034) S(1.3) R(>256)
Adlercreutzia rubneri Actinobacteria Rare +
Aeribacillus pallidus Firmicutes Unlikely +
Aerococcus vaginalis Firmicutes Non +
Aerococcus viridans Firmicutes Rare + R S(0.25/0.25), W(0.25–0.5) S(0.125/0.25), W(0.125–0.5) R
Aeromicrobium massiliense Actinobacteria Rare + R S
Aeromicrobium tamlense Actinobacteria Rare +
Aeromonas allosaccharophila Proteobacteria Rare neg S(25KB) S(50KB) S(10KB) R(12KB) R(25KB) S(300U)
Aeromonas bestiarum Proteobacteria Rare neg vr(4KB)
Aeromonas caviae Proteobacteria Unlikely neg R S(4KB)
Aeromonas dhakensis Proteobacteria Rare neg S(30KB) S(25KB) R
Aeromonas encheleia Proteobacteria Unlikely neg S S R R
Aeromonas enteropelogenes Proteobacteria Rare neg
Aeromonas eucrenophila Proteobacteria Non neg S(4KB)
Aeromonas hydrophila Proteobacteria Unlikely neg S R vr(4KB)
Aeromonas hydrophila subsp. hydrophila Proteobacteria Unlikely neg S R vr(4KB)
Aeromonas jandaei Proteobacteria Rare neg S(25KB) S(10KB) R(12KB) R(300KB) R(25KB) S R(4KB) S(300U)
Aeromonas media Proteobacteria Rare neg S S R S(4KB)
Aeromonas popoffii Proteobacteria Unlikely neg S S R R
Aeromonas salmonicida Proteobacteria Unlikely neg
Aeromonas schubertii Proteobacteria Non neg S(30KB) M(250KB) S(10KB)
Aeromonas sobria Proteobacteria Rare neg S S R
Aeromonas taiwanensis Proteobacteria Non neg S S S
Aeromonas tecta Proteobacteria Rare neg S(30KB) S(0.5/0.5), W(0.125–2) S(25KB) S(0.8/0.8), W(0.8) S(≤0.015/≤0.015), W(≤0.015–0.125)
Aeromonas trota Proteobacteria Rare neg S(<10/-), W(<10) S S(4KB) R
Aeromonas veronii Proteobacteria Rare neg S(30KB) vr(250KB) S S S(10KB) R
Aestuariimicrobium kwangyangense Actinobacteria Rare + S R S R
Afipia birgiae Proteobacteria Unlikely neg R(>256) R(>256)
Afipia broomeae Proteobacteria Rare neg
Afipia lausannensis Proteobacteria Unlikely neg
Africanella massiliensis Firmicutes Rare +
Agathobacter ruminis Firmicutes Rare +
Agathobaculum butyriciproducens Firmicutes Moderate +
Agathobaculum desmolans Firmicutes Minor + S(12) R S(1.6)
Aggregatibacter actinomycetemcomitans Proteobacteria Rare neg S(0.5–1) S(0.06)
Aggregatibacter aphrophilus Proteobacteria Minor neg S(0.5/1), W(≤0.5-2) S S(0.06/0.25), W(≤0.06-0.25) S(0.8/0.8), W(≤0.015–>8) R(8/>32), W(2–>32)
Aggregatibacter segnis Proteobacteria Minor neg
Agrilactobacillus composti Firmicutes Unlikely +
Agrobacterium radiobacter Proteobacteria Unlikely neg M(≤2/38)
Agrobacterium rhizogenes Proteobacteria Unlikely neg
Agrobacterium tumefaciens Proteobacteria Unlikely neg
Agrococcus casei Actinobacteria Rare +
Agrococcus jejuensis Actinobacteria Rare +
Agrococcus jenensis Actinobacteria Rare + S(30KB) S(300KB) S(2KB) S(300U)
Agrococcus terreus Actinobacteria Unlikely +
Akkermansia glycaniphila Verrucomicrobia Rare neg R(24)
Akkermansia muciniphila Verrucomicrobia Widespread neg S R S R R R R R S R S S S R
Alcaligenes faecalis Proteobacteria Rare neg S(10KB) R(200KB) R(25KB) R(5KB) R(10KB)
Alcaligenes faecalis subsp. faecalis Proteobacteria Unlikely neg
Aliagarivorans marinus Proteobacteria Rare neg
Aliarcobacter butzleri Proteobacteria Rare neg R(>32) S(4KB) R(50) S R(10KB) R(>8) R(15KB) S(10U) S(5U)
Aliarcobacter cryaerophilus Proteobacteria Rare neg R(4) R(8) R(2)
Aliarcobacter skirrowii Proteobacteria Rare neg
Alicyclobacillus acidocaldarius Firmicutes Rare +
Aliiruegeria sabulilitoris Proteobacteria Unlikely neg S(100KB) S(5KB) R(100U)
Alistipes communis Bacteroidetes Rare neg S(30KB)
Alistipes dispar Bacteroidetes Rare neg
Alistipes finegoldii Bacteroidetes Moderate neg R(5KB) R(10KB)
Alistipes ihumii Bacteroidetes Moderate neg R S
Alistipes indistinctus Bacteroidetes Moderate neg
Alistipes inops Bacteroidetes Rare neg R S R S S S
Alistipes marseilloanorexicus Bacteroidetes Rare neg
Alistipes massiliensis Bacteroidetes Rare neg
Alistipes megaguti Bacteroidetes Rare neg
Alistipes montrealensis Bacteroidetes Rare neg S R R
Alistipes obesi Bacteroidetes Moderate neg S S R R R
Alistipes onderdonkii Bacteroidetes Moderate neg R(30KB) R(10KB)
Alistipes onderdonkii subsp. vulgaris Bacteroidetes Rare neg R(30KB) R(10KB)
Alistipes provencensis Bacteroidetes Rare neg
Alistipes putredinis Bacteroidetes Widespread neg S(2/8), W(0.25–32) S(0.25/4), W(0.06->32) R(5KB) M(0.25/>32), W(0.06->32) R(10KB)
Alistipes senegalensis Bacteroidetes Moderate neg R R S R
Alistipes shahii Bacteroidetes Widespread neg R(5KB) R(10KB)
Alistipes timonensis Bacteroidetes Moderate neg S R S R
Alkalibacillus halophilus Firmicutes Unlikely +
Alkalihalobacillus alcalophilus Firmicutes Unlikely + S(p) S(p) S(p) S(p)
Alkalihalobacillus gibsonii Firmicutes Rare +
Alkalihalobacillus halodurans Firmicutes Rare + S(p) S(p) S(p) S(p)
Alkalihalobacillus oshimensis Firmicutes Unlikely +
Alkaliphilus metalliredigens Firmicutes Rare +
Alkaliphilus oremlandii Firmicutes Non +
Alkaliphilus transvaalensis Firmicutes Non +
Alkanindiges illinoisensis Proteobacteria Non vr
Allisonella histaminiformans Firmicutes Minor neg R
Allobaculum fili Firmicutes Rare +
Allobaculum mucilyticum Firmicutes Rare +
Alloprevotella rava Bacteroidetes Rare neg S(0.5/1), W(0.25–1) R(128/>512), W(64->512) R(10KB)
Alloprevotella tannerae Bacteroidetes Minor neg S(12) S(0.25/1), W(≤0.03-2) R S(≤0.03/0.25), W(≤0.03->32) R
Alloscardovia omnicolens Actinobacteria Minor + S(0.5/1), W(0.25–2.0)
Alteracholeplasma palmae Tenericutes Rare unk
Alterileibacterium massiliense Firmicutes Rare neg
Amaricoccus kaplicensis Proteobacteria Unlikely neg
Amedibacillus dolichus Firmicutes Minor +
Amedibacterium intestinale Firmicutes Rare + S R S S
Aminipila butyrica Firmicutes Rare +
Aminipila terrae Firmicutes Rare + S
Aminomonas paucivorans Synergistetes Rare neg
Ammonifex degensii Firmicutes Non neg
Amycolatopsis alba Actinobacteria Rare + S(30KB) S(2KB)
Amycolatopsis mediterranei Actinobacteria Rare +
Amycolatopsis thailandensis Actinobacteria Rare +
Amycolatopsis vancoresmycina Actinobacteria Unlikely +
Anaerobiospirillum succiniciproducens Proteobacteria Rare neg S M(4/8), W(1–8) R S(4) R R(32/>32), W(8–>32) R R(>256) R
Anaerobiospirillum thomasii Proteobacteria Rare neg S M(4/8), W(1–8) R R R R(32/>32), W(8–>32) R R
Anaerobutyricum hallii Firmicutes Widespread +
Anaerobutyricum soehngenii Firmicutes Rare +
Anaerococcus hydrogenalis Firmicutes Rare +
Anaerococcus jeddahensis Firmicutes Rare + S S R S S
Anaerococcus lactolyticus Firmicutes Rare + S(0.25/1), W(0.03–2) S(0.25/0.5), W(0.06–1) S(0.125/0.5), W(0.03–1)
Anaerococcus marasmi Firmicutes Rare +
Anaerococcus mediterraneensis Firmicutes Rare +
Anaerococcus murdochii Firmicutes Rare + S(1-4) S(1) W(0.12-64) S(10KB)
Anaerococcus obesiensis Firmicutes Rare +
Anaerococcus octavius Firmicutes Rare + S S(0.25/1), W(0.03–2) S(0.25/0.5), W(0.06–1) S S(0.125/0.5), W(0.03–1)
Anaerococcus prevotii Firmicutes Minor + S(2/4), W(1–8) S(0.25/1), W(0.125-2) S(0.008/0.016), W(0.008-0.03) S(0.03/0.125), W(0.015–0.25) S(0.125/0.125), W(0.006-0.25) S(0.5/1), W(0.125-1.0) S(≤0.03/0.5), W(≤0.03->32) S(0.06/0.125), W(0.03-16)
Anaerococcus provencensis Firmicutes Rare +
Anaerococcus rubeinfantis Firmicutes Rare + S(<0.016) S(<0.016) S(<0.023)
Anaerococcus senegalensis Firmicutes Rare + S S S
Anaerococcus tetradius Firmicutes Rare + S(2/4), W(1–8) S(0.5/2), W(≤0.125-2) S(0.008/0.016), W(0.008-0.03) S(0.03/0.125), W(0.015–0.25) S(0.125/0.125), W(0.006-0.25) S(0.5/1), W(0.125-1.0) M(0.06/>16), W(0.06->16) S(0.25/1), W(0.03–1)
Anaerococcus vaginalis Firmicutes Minor + S S(0.5/2), W(0.25–2) S(0.25/0.5), W(0.06–1) M(0.125/64), W(0.03->64) S(0.125/1), W(0.06–1)
Anaerocolumna aminovalerica Firmicutes Rare + S(0.5/1), W(0.25–2) S(0.25/1), W(0.06–8) S(1/2), W(≤0.06-8) S(0.25/0.25), W(0.03–8) S(0.5/2), W(≤0.03-2)
Anaerocolumna cellulosilytica Firmicutes Rare +
Anaerocolumna chitinilytica Firmicutes Rare +
Anaerocolumna sedimenticola Firmicutes Rare +
Anaerocolumna xylanovorans Firmicutes Rare +
Anaerofilum pentosovorans Firmicutes Rare +
Anaerofustis stercorihominis Firmicutes Minor + S(5KB) R(10KB)
Anaeroglobus geminatus Firmicutes Minor neg S(4KB) R(5KB) S(10KB)
Anaeromassilibacillus senegalensis Firmicutes Rare neg
Anaerorhabdus furcosa Firmicutes Rare neg
Anaerosalibacter bizertensis Firmicutes Rare + S(125)
Anaerosalibacter massiliensis Firmicutes Rare + S R
Anaerosphaera massiliensis Firmicutes Rare +
Anaerospora hongkongensis Firmicutes Rare neg S(0.032) R(16)
Anaerostipes butyraticus Firmicutes Rare +
Anaerostipes caccae Firmicutes Moderate + S(≤2) R(>4)
Anaerostipes coli Firmicutes Rare +
Anaerostipes hadrus Firmicutes Moderate +
Anaerostipes hominis Firmicutes Rare vr S S
Anaerostipes rhamnosivorans Firmicutes Rare vr
Anaerostipes rhamnosus Firmicutes Rare +
Anaerotignum faecicola Firmicutes Rare +
Anaerotignum lactatifermentans Firmicutes Moderate neg S(0.25) S(>32)
Anaerotignum neopropionicum Firmicutes Rare neg
Anaerotignum propionicum Firmicutes Rare +
Anaerotruncus colihominis Firmicutes Moderate + S(<0.016)) S(0.5) R(10KB)
Anaerotruncus massiliensis Firmicutes Rare neg S(0.016) S(0.125) S(0.125) S(0.5)
Anaerotruncus rubiinfantis Firmicutes Moderate +
Anaerovorax odorimutans Firmicutes Rare vr
Ancylobacter polymorphus Proteobacteria Rare neg
Aneurinibacillus aneurinilyticus Firmicutes Rare + S
Aneurinibacillus migulanus Firmicutes Rare + S
Angelakisella massiliensis Firmicutes Rare neg
Anoxybacillus flavithermus Firmicutes Non +
Anoxybacillus gonensis Firmicutes Unlikely +
Anoxynatronum sibiricum Firmicutes Rare +
Anseongella ginsenosidimutans Bacteroidetes Unlikely neg
Aquabacterium citratiphilum Proteobacteria Rare neg
Aquabacterium commune Proteobacteria Rare neg
Aquabacterium parvum Proteobacteria Rare neg
Aquamicrobium lusatiense Proteobacteria Unlikely neg
Aquincola tertiaricarbonis Proteobacteria Non neg
Arabia massiliensis Actinobacteria Rare neg
Arachnia propionica Actinobacteria Rare + S
Arcanobacterium haemolyticum Actinobacteria Rare +
Arthrobacter agilis Actinobacteria Non + S S
Arthrobacter castelli Actinobacteria Rare +
Arthrobacter citreus Actinobacteria Unlikely vr
Arthrobacter gandavensis Actinobacteria Unlikely +
Arthrobacter globiformis Actinobacteria Unlikely + M(4) R S(0.06) S(0.25) S(1)
Arthrobacter koreensis Actinobacteria Unlikely +
Arthrobacter luteolus Actinobacteria Unlikely +
Arthrobacter parietis Actinobacteria Non +
Arthrobacter pigmenti Actinobacteria Non +
Arthrobacter russicus Actinobacteria Unlikely +
Asaccharospora irregularis Firmicutes Rare +
Asticcacaulis biprosthecium Proteobacteria Unlikely neg
Asticcacaulis excentricus Proteobacteria Unlikely neg
Atlantibacter hermannii Proteobacteria Rare neg S S S S R
Atopobium minutum Actinobacteria Minor + S(12) M(>32/>32), W(0.5->32) M(>0.5/>32), W(0.06->32) S(0.125/2), W(0.02->32) M(>2/>32), W(0.25->32)
Atopostipes suicloacalis Firmicutes Unlikely +
Aureimonas altamirensis Proteobacteria Unlikely neg S(30KB) S(0.008) R(30KB) S(30KB)
Aureimonas ureilytica Proteobacteria Unlikely neg
Averyella dalhousiensis Proteobacteria Rare neg S(30KB) S(250KB) S(10KB)
Azoarcus pumilus Proteobacteria Rare neg
Azospirillum lipoferum Proteobacteria Rare neg
Azotobacter vinelandii Proteobacteria Non neg
Bacilliculturomica massiliensis Firmicutes Rare +
Bacillus altitudinis Firmicutes Rare + S(25KB) R(15KB) R(30KB) R(10KB)
Bacillus amyloliquefaciens Firmicutes Rare + S(2/4), W(2-4) S(0.5/1), W(0.5-1) S(0.5/0.5), W(0.25-0.5) R R
Bacillus andreraoultii Firmicutes Rare + S R R
Bacillus aneurinolyticus Firmicutes Rare + S(10KB) R
Bacillus anthracis Firmicutes Non +
Bacillus atrophaeus Firmicutes Rare + R
Bacillus badius DSM 23T Firmicutes Rare + S S
Bacillus badius DSM 5610 Firmicutes Rare + S S
Bacillus baekryungensis Firmicutes Non +
Bacillus benzoevorans Firmicutes Rare +
Bacillus caccae Firmicutes Rare +
Bacillus cereus Firmicutes Minor + S(<2) R R S(0.18) R(vr) R R
Bacillus circulans Firmicutes Rare + S R(32/>32), W(0.125->32) S S S(≤0.03/0.5), W(≤0.03->32) R
Bacillus clausii Firmicutes Rare + S R S(0.06) S(0.12) R(>32) R
Bacillus cytotoxicus Firmicutes Rare +
Bacillus dakarensis Firmicutes Rare +
Bacillus endophyticus Firmicutes Unlikely +
Bacillus firmus Firmicutes Rare + S(4) S S S S(8) S
Bacillus fordii Firmicutes Rare neg
Bacillus halotolerans Firmicutes Rare +
Bacillus idriensis Firmicutes Rare +
Bacillus infantis Firmicutes Rare +
Bacillus kwashiorkori Firmicutes Rare + R S S
Bacillus licheniformis Firmicutes Minor + R(16/16), W(4-32) R S(4/4), W(4) R(16/32), W(2-128) vr S S R(8)
Bacillus marasmi Firmicutes Rare +
Bacillus massilioanorexius Firmicutes Rare + R R S
Bacillus massiliogabonensis Firmicutes Unlikely neg
Bacillus massilionigeriensis Firmicutes Rare + S(0.29)
Bacillus mediterraneensis Firmicutes Rare + S(0.16)
Bacillus methanolicus Firmicutes Non + S(30KB) S(5KB) S(5KB) S(5KB) S(300KB) S(10KB)
Bacillus mojavensis Firmicutes Rare + R
Bacillus mycoides Firmicutes Rare + S
Bacillus niameyensis Firmicutes Rare + S R S
Bacillus pakistanensis Firmicutes Rare + R(8) R(4) M(25) M(2/38) R(2) S(4) R(2)
Bacillus phocaeensis Firmicutes Rare + S(0.19)
Bacillus pseudofirmus Firmicutes Rare + R S R S
Bacillus pseudomycoides Firmicutes Unlikely +
Bacillus pumilus Firmicutes Rare + vr S S vr S R R
Bacillus rubiinfantis Firmicutes Rare +
Bacillus sinesaloumensis Firmicutes Unlikely +
Bacillus siralis Firmicutes Rare + S(25KB) S(5KB)
Bacillus smithii Firmicutes Rare +
Bacillus sonorensis Firmicutes Rare + R(16/32) S S(4/4) S(4/4) S S R
Bacillus subtilis Firmicutes Minor + S(8/8) R(200) S(1) R(12.5) S(<0.078) S(8/8) R R R R R
Bacillus testis Firmicutes Rare + S R S S S S
Bacillus thuringiensis Firmicutes Rare + S R S R(vr)
Bacillus timonensis Firmicutes Rare neg R S
Bacillus tuaregi Firmicutes Rare + S(0.293)
Bacillus vallismortis Firmicutes Rare + R
Bacillus velezensis Variant polyfermenticus Firmicutes Rare + S(2/4), W(1-4) S(300) S(25) S(0.5/1), W(0.5-1) S(0.5/1), W(0.12-1) S(30) S(10)
Bacillus wiedmannii Firmicutes Rare +
Bacteroides acidifaciens Bacteroidetes Moderate neg
Bacteroides bouchesdurhonensis Bacteroidetes Moderate neg
Bacteroides caccae Bacteroidetes Widespread neg S(4/4), W(1-4) R(>1024) R S(1/2), W(0.5-16) R R R R(96) R S(8) S(2) R(64/128), W(16–128) R(64/128), W(32–256) M(4/>128), W(0.5–>128) S R(>32/>32), W(>32) S(1.5) S
Bacteroides caecimuris Bacteroidetes Rare neg
Bacteroides cellulosilyticus Bacteroidetes Moderate neg S(2/2), W(0.5–2) M(2/>128), W(0.06–>128)
Bacteroides clarus Bacteroidetes Moderate neg S(1) R(96)
Bacteroides congonensis Bacteroidetes Moderate neg S(4KB) S(25KB) R(15KB)
Bacteroides coprosuis Bacteroidetes Rare neg
Bacteroides cutis Bacteroidetes Moderate neg
Bacteroides eggerthii Bacteroidetes Widespread neg S(4/8), W(1–8) S(1/2), W(0.1–4) R(128) R M(2/>128), W(≤0.5->128) R
Bacteroides faecalis Bacteroidetes Rare neg
Bacteroides faecichinchillae Bacteroidetes Rare neg
Bacteroides faecis Bacteroidetes Moderate neg S(8) S(2) S(2-4)
Bacteroides finegoldii Bacteroidetes Widespread neg
Bacteroides fluxus Bacteroidetes Moderate neg R
Bacteroides fragilis Bacteroidetes Widespread neg S(2/4), W(0.015-8) R(>1024) R S(1/1), W(0.25-2) S S(0.06/0.125), W(≤0.008-0.125) R R R(24) R S(6) S(1) R(64/128), W(16–128) R(64/128), W(32–256) S(0.5/2), W(0.125-4) S R(>32/>32), W(>32) R(>1024) S
Bacteroides galacturonicus Bacteroidetes Rare neg R(12) S(1.6)
Bacteroides gallinarum Bacteroidetes Moderate neg
Bacteroides graminisolvens Bacteroidetes Rare neg
Bacteroides helcogenes Bacteroidetes Rare neg R R R,S
Bacteroides heparinolyticus Bacteroidetes Rare neg S(1/2), W(0.06–4) S(0.8/0.8), W(0.8) S(0.06/0.25), W(0.06–0.5)
Bacteroides ihuae Bacteroidetes Rare neg S(4KB) S(25KB) S(15KB)
Bacteroides ilei Bacteroidetes Minor neg S(4KB) S(25KB) S(15KB)
Bacteroides intestinalis Bacteroidetes Widespread neg S(4) S(1/2), W(0.25–2) M(1/>32), W(0.25–>32)
Bacteroides luhongzhouii Bacteroidetes Rare neg
Bacteroides luti Bacteroidetes Rare neg
Bacteroides mediterraneensis Bacteroidetes Moderate neg S(4KB) R(25KB) S(15KB)
Bacteroides ndongoniae Bacteroidetes Minor neg S(4KB)
Bacteroides neonati Bacteroidetes Minor neg S
Bacteroides nordii Bacteroidetes Moderate neg S(2/2), W(0.5–2) R(64/128), W(32–256) M(2/>128), W(0.06–>128) R(>32/>32), W(>32) R(10KB)
Bacteroides oleiciplenus Bacteroidetes Moderate neg
Bacteroides ovatus Bacteroidetes Widespread neg S(8/8), W(4–8) R(>1024) R S(1/2), W(0.25-2) S S(0.06/0.125), W(0.03-0.25) R R R(64) R S(3) S(1) R(64/128), W(16–128) R(64/128), W(32–256) M(0.032/>256), W(0.016->256) S R(>32/>32), W(>32) R(96) S
Bacteroides pectinophilus Bacteroidetes Moderate neg S(12) S(1.6)
Bacteroides propionicifaciens Bacteroidetes Rare neg
Bacteroides pyogenes Bacteroidetes Minor neg S(0.25/0.5), W(0.125–1) R S(0.03/0.125), W(0.03–2) S(10KB,vr) R
Bacteroides reticulotermitis Bacteroidetes Rare neg
Bacteroides salyersiae Bacteroidetes Moderate neg S(2/2), W(0.5–2) R(≥128) M(2/>128), W(0.06–>128) R(10KB)
Bacteroides sp. Strain D8 Bacteroidetes Rare neg
Bacteroides stercorirosoris Bacteroidetes Moderate neg
Bacteroides stercoris Bacteroidetes Widespread neg S(4/8), W(0.5–8) S(2/2), W(0.5–2) R(>1024) R(64/128), W(16–128) R(64/128), W(16–128) M(2/>128), W(≤0.5->128)
Bacteroides thetaiotaomicron Bacteroidetes Widespread neg S(4/8), W(2-8) R(>1024) R S(1/1), W(0.5-2) S S(0.06/0.125), W(0.06-0.125) R R R(48) R R(>32) S(1.5) R(64/128), W(16–128) R(64/128), W(32–256) M(4/>32), W(0.25->32) S R(>32/>32), W(>32) R(>1024) S
Bacteroides timonensis Bacteroidetes Rare neg S S R
Bacteroides togonis Bacteroidetes Minor neg S(4KB) R(25KB) R(15KB)
Bacteroides uniformis Bacteroidetes Widespread neg S(4/8), W(2-32) R(>1024) R S(1/2), W(0.5-4) S S(0.016-0.125) R R R(64) R R(>32) S(0.75) R(>1000) R(>1000) M(4/>128), W(0.5->128) S R(>1024) S
Bacteroides xylanisolvens Bacteroidetes Widespread neg S R S(2/2), W(0.5–2) S R R R(96) R R S M(2/>128), W(0.06–>128) S R S
Bacteroides zhangwenhongi Bacteroidetes Rare neg
Bacteroides zoogleoformans Bacteroidetes Rare neg S S(0.8/0.8), W(0.8) S
Bariatricus massiliensis Firmicutes Minor +
Barnesiella intestinihominis Bacteroidetes Moderate neg
Barnesiella viscericola Bacteroidetes Rare neg
Bartonella vinsonii Proteobacteria Non neg
Bavariicoccus seileri Firmicutes Rare +
Bdellovibrio bacteriovorus Bdellovibrionota Moderate neg R(80KB) R(30KB) R(10KB) R(300U)
Beduinella massiliensis Firmicutes Rare neg
Beduini massiliensis Firmicutes Rare neg S S R S S
Beduinibacterium massiliense Firmicutes Rare +
Belnapia soli Proteobacteria Rare neg
Berryella intestinalis Actinobacteria Rare +
Bhargavaea beijingensis Firmicutes Rare + R
Bhargavaea cecembensis Firmicutes Non + S(30KB) S(300KB) R(25KB) S(30KB) R(2KB) S(30KB) R(10KB) R(50U)
Bifidobacterium adolescentis Actinobacteria Widespread + S(2.6/4.3), W(2.0-5.0) R M(8/>64), W(1–>64) M(<27/73), W(15-100) R R R R S S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25-1) M(0.032/>256), W(0.016->256) S(0.76/2.9), W(0.30-6) S(0.25/0.5), W(≤0.03-1) R R(>700) S
Bifidobacterium aerophilum Actinobacteria Rare +
Bifidobacterium angulatum Actinobacteria Moderate + S(1.7/2.8), W(1-3) M(16/>32), W(0.5–>32) S(17/25), W(15-30) S S(1/1), W(0.5–1) S R(>700)
Bifidobacterium animalis Actinobacteria Moderate + S(7.8) M(16/>32), W(0.5–>32) S S(0.25/0.5), W(0.25-2) S R(>31300)
Bifidobacterium animalis subsp. lactis Actinobacteria Rare + R(32/128), W(2->512) S(1/1), W(0.5–1)
Bifidobacterium asteroides Actinobacteria Rare + S(2.1/2.8) W(2.0-3.0) M(8.0/14) W(4.0-20) S S S R(1000) R
Bifidobacterium avesanii Actinobacteria Rare +
Bifidobacterium biavatii Actinobacteria Rare +
Bifidobacterium bifidum Actinobacteria Widespread + S(<3/3.7), W(3-4) R(32/>32), W(0.125->32) S(13/24), W(4-40) S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25-1) S(0.05/0.09), W(0.03-0.1) S(0.64/1.4), W(0.3-3) S(0.25/0.5), W(≤0.03-1) R(>700)
Bifidobacterium boum Actinobacteria Rare + S vr S S S
Bifidobacterium breve Actinobacteria Widespread + S(<1/2.6), W(1-4) R(32/>32), W(0.125->32) S(16/19), W(10-20) S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25-1) S(≤0.03/0.5), W(≤0.03->32) M(1/5.8), W(0.10-15) S(0.25/0.5), W(≤0.03-1) R(>700)
Bifidobacterium callitrichidarum Actinobacteria Rare +
Bifidobacterium catenulatum Actinobacteria Moderate + S(2.8/3.7), W(2-4) R(32/>32), W(0.125->32) S(<15/13), W(15-20) S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25-1) S(0.03/0.03), W(0.03–0.25) S S(0.25/0.5), W(≤0.03-1) R(>700)
Bifidobacterium catenulatum subsp. kashiwanohense Actinobacteria Rare + S vr S S S
Bifidobacterium choerinum Actinobacteria Rare + S S S S R
Bifidobacterium coryneforme Actinobacteria Rare + S(5/5), W(5) R S(<20/27), W(20-30) S S S R(>700)
Bifidobacterium cuniculi Actinobacteria Rare +
Bifidobacterium dentium Actinobacteria Moderate + S(5.1/5.8), W(5-6) R(32/>32), W(0.125->32) S(22/44), W(15-60) S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25-1) S(0.06/0.06), W(0.06–0.125) S S(0.25/0.5), W(≤0.03-1) R(>700)
Bifidobacterium eulemuris Actinobacteria Rare +
Bifidobacterium faecale Actinobacteria Rare +
Bifidobacterium gallicum Actinobacteria Rare + S vr S S S
Bifidobacterium imperatoris Actinobacteria Rare +
Bifidobacterium indicum Actinobacteria Rare + S(3.4/4.8) W(2.0-5.0) M(12/14) W(10-15) R(1000)
Bifidobacterium lemurum Actinobacteria Rare +
Bifidobacterium longum subsp. infantis Actinobacteria Moderate + S(2.6/4.3), W(2.0-5.0) R(>500) S(<15/21), W(15-30) S S(0.48/0.75), W(0.30-3.0) S(0.38/0.66), W(0.05-0.70) S(1.5/3.2), W(0.30-5.0) R(>1000)
Bifidobacterium longum subsp. longum Actinobacteria Widespread + S(2.5/3.6), W(3-4) R R(32/>32), W(0.125->32) S(17/19), W4-40) R R R R S S(0.25/0.5), W(0.125–0.5) S(0.5/1), W(0.25-1) S(≤0.03/0.5), W(≤0.03->32) S(1.6/3.5), W(0.1-0-6) S(0.25/0.5), W(≤0.03-1) R R(>700) S
Bifidobacterium longum subsp. suis Actinobacteria Rare + S S S S R
Bifidobacterium merycicum Actinobacteria Rare +
Bifidobacterium minimum Actinobacteria Rare +
Bifidobacterium mongoliense Actinobacteria Unlikely + S vr S S S
Bifidobacterium moukalabense Actinobacteria Rare +
Bifidobacterium myosotis Actinobacteria Rare +
Bifidobacterium pseudocatenulatum Actinobacteria Widespread + S R(32/>32), W(0.125->32) S S(0.5/1), W(0.25-1) S(0.06/0.06), W(0.06–0.125) S
Bifidobacterium pseudolongum Actinobacteria Minor + S(<3/3.7), W3-4) R(>10000) S(<8/16), W8-20) S S S(≤0.03) S R(>31300) R(>700)
Bifidobacterium pseudolongum subsp. globosum Actinobacteria Rare +
Bifidobacterium pullorum subsp. gallinarum Actinobacteria Rare +
Bifidobacterium pullorum subsp. saeculare Actinobacteria Rare +
Bifidobacterium ramosum Actinobacteria Rare +
Bifidobacterium reuteri Actinobacteria Rare +
Bifidobacterium ruminantium Actinobacteria Minor + S M(16/>32), W(0.5–>32)
Bifidobacterium saguini Actinobacteria Rare +
Bifidobacterium scardovii Actinobacteria Minor + S S
Bifidobacterium stellenboschense Actinobacteria Rare +
Bifidobacterium subtile Actinobacteria Rare + S S S S R
Bifidobacterium thermacidophilum Actinobacteria Rare +
Bifidobacterium thermophilum Actinobacteria Rare + S(2.3/3.5), W(2-4) S(<15/21), W(15-30) R(>32) R(>700)
Bifissio spartinae Bacteroidetes Rare neg
Bilophila wadsworthia Desulfobacterota Widespread neg S(4/8), W(0.5–8) R S(0.125/0.25), W(0.06-0.25) R R R R R R R(512/1024), W(0.5->1024) S(0.5/2), W(0.25-2) S R(>32/>32), W(>32) S R
Bittarella massiliensis Firmicutes Moderate neg
Blastococcus massiliensis Actinobacteria Rare + R S
Blastomonas natatoria Proteobacteria Unlikely neg
Blautia brookingsii Firmicutes Rare + S S
Blautia caecimuris Firmicutes Rare +
Blautia coccoides Firmicutes Minor + R(10KB) R(10KB)
Blautia faecicola Firmicutes Rare +
Blautia faecis Firmicutes Rare +
Blautia glucerasea Firmicutes Rare +
Blautia hansenii Firmicutes Moderate +
Blautia hominis Firmicutes Rare + S(25KB) S(30KB)
Blautia hydrogenotrophica Firmicutes Moderate +
Blautia intestinalis Firmicutes Rare +
Blautia liquoris Firmicutes Rare +
Blautia luti Firmicutes Minor +
Blautia marasmi Firmicutes Rare +
Blautia massiliensis Firmicutes Moderate neg S R
Blautia obeum Firmicutes Widespread + S R S S R R R R S S S S S S
Blautia phocaeensis Firmicutes Rare +
Blautia producta Firmicutes Widespread + S(2/4), W(1–8) S(0.5/2), W(0.06->32) R S(0.25/1), W(0.06–1) S(0.06/2), W(0.06–16)
Blautia provencensis Firmicutes Rare +
Blautia pseudococcoides Firmicutes Rare +
Blautia schinkii Firmicutes Rare +
Blautia stercoris Firmicutes Minor +
Blautia wexlerae Firmicutes Moderate + S(5KB) R(10KB)
Bordetella bronchiseptica Proteobacteria Non neg S(0.8/0.8), W(≤0.015–>8) R(>32/>32), W(4–>32)
Bordetella hinzii Proteobacteria Unlikely neg R(>256) S(<0.5/9.5), W(0.023-38) R(>32) R(>32) R(>256) R(>256) S(0.094-0.38) R(>32)
Bordetella trematum Proteobacteria Non neg
Bosea massiliensis Proteobacteria Rare neg R(256) R(4-128) M(4-128)
Brachybacterium conglomeratum Actinobacteria Rare +
Brachybacterium faecium Actinobacteria Unlikely +
Brachybacterium ginsengisoli Actinobacteria Unlikely + S S
Brachybacterium massiliense Actinobacteria Rare +
Brachybacterium muris Actinobacteria Rare +
Brachybacterium paraconglomeratum Actinobacteria Rare +
Brachymonas chironomi Proteobacteria Unlikely neg
Brachyspira aalborgi Spirochaetes Rare neg R R
Brachyspira hyodysenteriae Spirochaetes Rare neg
Brachyspira pilosicoli Spirochaetes Unlikely neg S(5) S(0.1) R S(1) R(20) R R
Bradyrhizobium denitrificans Proteobacteria Rare neg
Bradyrhizobium elkanii Proteobacteria Rare neg R(500KB)
Bradyrhizobium ganzhouense Proteobacteria Unlikely neg R(300)
Bradyrhizobium icense Proteobacteria Unlikely neg R(5KB)
Bradyrhizobium japonicum Proteobacteria Rare neg S(500KB)
Bradyrhizobium neotropicale Proteobacteria Rare neg
Brassicibacter mesophilus Firmicutes Rare neg
Brenneria populi Li et al. 2015 Proteobacteria Rare neg
Brevibacillus agri Firmicutes Unlikely + S(10KB)
Brevibacillus borstelensis Firmicutes Rare +
Brevibacillus brevis Firmicutes Rare vr R(10KB,vr)
Brevibacillus centrosporus Firmicutes Unlikely +
Brevibacillus choshinensis Firmicutes Rare + R(10KB)
Brevibacillus formosus Firmicutes Unlikely +
Brevibacillus laterosporus Firmicutes Rare vr S
Brevibacillus massiliensis Firmicutes Rare + R S R S
Brevibacillus parabrevis Firmicutes Unlikely vr S(10KB)
Brevibacillus thermoruber Firmicutes Non + S(50) S(50)
Brevibacterium aurantiacum Actinobacteria Unlikely +
Brevibacterium casei Actinobacteria Rare + S(2-16) R(512) R(512) R(1024) R(128) R(512) S(0.5-2) S(0.5-1) S(0.01-2) S(0.13-2) R(512)
Brevibacterium celere Actinobacteria Rare + R(15KB) R(25KB)
Brevibacterium epidermidis Actinobacteria Rare + R(>32) S(0.12), S(0.5) S(4)
Brevibacterium ihuae Actinobacteria Rare +
Brevibacterium iodinum Actinobacteria Unlikely vr
Brevibacterium linens Actinobacteria Unlikely + S(0.25)
Brevibacterium luteolum Actinobacteria Rare + S
Brevibacterium mcbrellneri Actinobacteria Unlikely + S S
Brevibacterium otitidis Actinobacteria Non + S(0.125) R(8) S(0.25)
Brevibacterium paucivorans Actinobacteria Rare +
Brevibacterium pityocampae Actinobacteria Rare +
Brevibacterium ravenspurgense Actinobacteria Rare + vr S I S
Brevibacterium samyangense Actinobacteria Rare +
Brevibacterium sanguinis Actinobacteria Rare + S
Brevibacterium senegalense Actinobacteria Rare + R R S
Brevundimonas aurantiaca Proteobacteria Rare neg
Brevundimonas bacteroides Proteobacteria Rare neg
Brevundimonas bullata Proteobacteria Rare neg
Brevundimonas diminuta Proteobacteria Rare neg S(0.05)
Brevundimonas intermedia Proteobacteria Rare neg
Brevundimonas nasdae Proteobacteria Rare neg
Brevundimonas terrae Proteobacteria Rare neg S(100KB) R(15KB) S(5KB) S(100U)
Brevundimonas vesicularis Proteobacteria Rare neg S
Brochothrix thermosphacta Firmicutes Unlikely + R(32-256) S
Brucella anthropi Proteobacteria Unlikely neg S
Brucella cytisi Proteobacteria Rare neg R R(300U)
Brucella melitensis Proteobacteria Non neg
Brucella tritici Proteobacteria Unlikely neg M S S
Buchnera aphidicola Proteobacteria Non neg
Bulleidia extructa Firmicutes Rare + S(5KB)
Burkholderia arboris Proteobacteria Rare neg
Burkholderia cepacia Proteobacteria Rare neg R S(1/2), W(0.5-2) R R(>128/>128), W(>128)
Burkholderia gladioli Proteobacteria Unlikely neg
Burkholderia mallei Proteobacteria Unlikely neg
Burkholderia multivorans Proteobacteria Rare neg
Burkholderia pseudomallei Proteobacteria Unlikely neg
Burkholderia pyrrocinia Proteobacteria Unlikely neg
Burkholderia vietnamiensis Proteobacteria Rare neg
Buttiauxella agrestis Proteobacteria Rare neg
Butyribacter intestini Firmicutes Rare +
Butyricicoccus faecihominis Firmicutes Rare +
Butyricicoccus porcorum Firmicutes Rare +
Butyricicoccus pullicaecorum Firmicutes Minor + S(1) S(≤0.5) R(>128) S(0.25) vr(≤0.06-128)
Butyricimonas faecalis Bacteroidetes Rare neg
Butyricimonas faecihominis Bacteroidetes Rare neg
Butyricimonas paravirosa Bacteroidetes Rare neg
Butyricimonas phoceensis Bacteroidetes Rare neg R(10) S(4KB) S(25KB) S(1.25) S(30KB) S(30KB) S(15KB) R(CT50)
Butyricimonas synergistica Bacteroidetes Minor neg
Butyricimonas virosa Bacteroidetes Moderate neg S(clinic) S(clinic) S(clinic)
Butyrivibrio crossotus Firmicutes Widespread neg
Butyrivibrio fibrisolvens Firmicutes Minor neg
Butyrivibrio hungatei Firmicutes Unlikely neg
Butyrivibrio proteoclasticus Firmicutes Rare +
Caballeronia novacaledonica Proteobacteria Rare neg S
Caecibacter massiliensis Firmicutes Rare
Caldibacillus thermoamylovorans Firmicutes Unlikely +
Caldicellulosiruptor diazotrophicus Firmicutes Non +
Caldicoprobacter faecalis Firmicutes Unlikely neg
Caloranaerobacter azorensis Firmicutes Non neg
Campylobacter avium Proteobacteria Non neg
Campylobacter coli Proteobacteria Unlikely neg S(8) R(4, vr) vr R(2) S(16)
Campylobacter concisus Proteobacteria Minor neg S(4) S(1/4), W(0.25-4) R(128) S(0.25/2), W(0.125-4) S(0.5-1) S(≤0.25-1)
Campylobacter curvus Proteobacteria Rare neg S(2-4) S(4) R(128) S(0.5-1) S(4) R(8)
Campylobacter faecalis Proteobacteria Rare neg
Campylobacter fetus subsp. fetus Proteobacteria Rare neg S R(4, vr)
Campylobacter gracilis Proteobacteria Minor neg S(2/8), W(0.25–32) S(1/4), W(0.25-4) R(>128) S(0.25/2), W(0.125-4) S(0.5-1) S(≤0.25-1)
Campylobacter hominis Proteobacteria Minor neg M(4)
Campylobacter hyointestinalis subsp. hyointestinalis Proteobacteria Unlikely neg S(2-16) S(0.5-1), vr(4) S(1-2) R(64->128) R(>128) vr(1->128) R(>128) R(64->128)
Campylobacter jejuni subsp. doylei Proteobacteria Rare neg vr(5KB)
Campylobacter jejuni subsp. jejuni Proteobacteria Unlikely neg S(8) R(32->64) S(vr) S(2) S(16)
Campylobacter lanienae Proteobacteria Rare neg R(4) R(10) S
Campylobacter lari subsp. concheus Proteobacteria Rare neg S R(4) R R S
Campylobacter lari subsp. lari Proteobacteria Rare neg S R(4) R R S
Campylobacter mucosalis Proteobacteria Rare neg W(2-8) S(0.12-1) R(>128) S(0.25-0.5) S(0.5-1) S(<0.25-1)
Campylobacter peloridis Proteobacteria Rare neg R(4)
Campylobacter rectus Proteobacteria Rare neg S(1-2) S(1/4), W(0.25-4) R(>128) S(0.25/2), W(0.125-4) S(≤0.25-1) S(≤0.25-1)
Campylobacter showae Proteobacteria Rare neg S(1/4), W(0.25-4) S(0.25/2), W(0.125-4)
Campylobacter sputorum Proteobacteria Non neg
Campylobacter troglodytis Proteobacteria Rare neg
Campylobacter upsaliensis Proteobacteria Rare neg S(2-8) R(4, vr) S R(>128) S(0.25-0.5) S(0.5-1) S(0.25-1)
Campylobacter ureolyticus Proteobacteria Minor neg S(2/8), W(0.25–32) S(0.125/4), W(≤0.03-4) R(>32/>32), W(>32) S(≤0.03/2), W(≤0.03-2) R(>32/>32), W(>32) S(≤0.25-0.5) S(≤0.25)
Candidatus Babela massiliensis Candidatus Dependentiae Unlikely neg
Candidatus Dorea massiliensis Firmicutes Rare +
Candidatus Stoquefichus massiliensis Firmicutes Rare +
Capnocytophaga canimorsus Bacteroidetes Unlikely neg S vr S S R
Capnocytophaga gingivalis Bacteroidetes Non neg
Capnocytophaga granulosa Bacteroidetes Rare neg S(0.39/6.25), W(0.2-6.25) S(0.125/4), W(≤0.03-4) M(3.25/12), W(0.2-50) S(≤0.03/2), W(≤0.03-2) R(>128/>128), W(64->128)
Capnocytophaga leadbetteri Bacteroidetes Rare neg
Capnocytophaga ochracea Bacteroidetes Rare neg S(0.39/6.25), W(0.2-6.25) S(0.125/4), W(≤0.03-4) M(4) M(3.25/12), W(0.2-50) S(≤0.03/2), W(≤0.03-2) R(>128/>128), W(64->128)
Capnocytophaga sputigena Bacteroidetes Rare neg S(0.39/6.25), W(0.2-6.25) S(0.25/2), W(0.25-8) M(3.25/12), W(0.2-50) S(0.2/0.2), W(0.2-0.39) R(>128/>128), W(64->128)
Capnocytophaga stomatis Bacteroidetes Unlikely neg
Caproicibacter fermentans Firmicutes Rare neg
Cardiobacterium hominis Proteobacteria Rare neg S(<2) S(<2)
Cardiobacterium valvarum Proteobacteria Rare neg S(0.03)
Carnobacterium divergens Firmicutes Non +
Carnobacterium inhibens Firmicutes Rare +
Carnobacterium maltaromaticum Firmicutes Unlikely +
Carnobacterium mobile Firmicutes Non +
Casaltella massiliensis Firmicutes Rare neg
Catenibacillus scindens Firmicutes Rare +
Catenibacterium mitsuokai Firmicutes Moderate +
Catenulispora acidiphila Actinobacteria Unlikely + S(10)
Catonella morbi Firmicutes Rare neg S(12) S(1.6)
Caulobacter vibrioides Proteobacteria Unlikely neg
Cedecea davisae Proteobacteria Rare neg S S(clinic,500) S S S R R S
Cedecea lapagei Proteobacteria Rare neg
Cedecea neteri Proteobacteria Rare neg S R
Cellulomonas carbonis Actinobacteria Unlikely + S(30KB) S(300KB) S(30KB) S(30KB) S(2KB) S(5KB) S(25KB)
Cellulomonas composti Actinobacteria Rare +
Cellulomonas denverensis Actinobacteria Rare + M(2/76) S(0.5) S(2-4)
Cellulomonas fimi Actinobacteria Rare +
Cellulomonas flavigena Actinobacteria Rare +
Cellulomonas hominis Actinobacteria Rare + R(>8) (0.06-0.125) M(0.25-8)
Cellulomonas massiliensis Actinobacteria Rare + R R
Cellulomonas parahominis Actinobacteria Rare +
Cellulomonas timonensis Actinobacteria Rare + R R S S S R
Cellulosilyticum lentocellum Firmicutes Rare neg
Cellulosilyticum ruminicola Firmicutes Rare neg
Cellulosimicrobium cellulans Actinobacteria Rare +
Centipeda periodontii Firmicutes Rare neg
Cerasibacillus quisquiliarum Firmicutes Non +
Cetobacterium somerae Fusobacteria Rare neg S(<8) R(512) R(256) S(<2) S(10KB)
Chelatococcus asaccharovorans Proteobacteria Unlikely neg M(30KB) R(25KB) R(30KB) S(30KB) S(300U)
Chitinophaga agri Bacteroidetes Unlikely neg
Chlamydia trachomatis Chlamydiae Non neg S
Chloracidobacterium thermophilum Acidobacteria Non neg
Christensenella hongkongensis Firmicutes Minor + S(clinic) S(<0.02) S(2) R S
Christensenella massiliensis Firmicutes Rare neg
Christensenella minuta Firmicutes Minor neg S(8) S(0.12) S(0.03)
Christensenella timonensis Firmicutes Minor neg
Chromobacterium violaceum Proteobacteria Unlikely neg M(10KB) S(200KB) S(clinic) R(10KB) R(50KB)
Chromohalobacter japonicus Proteobacteria Unlikely neg R(30KB) S(25KB) R(30KB) R(30KB) R(300U)
Chromohalobacter salexigens Proteobacteria Unlikely neg
Chryseobacterium gallinarum Bacteroidetes Unlikely neg
Chryseobacterium gleum Bacteroidetes Unlikely neg
Chryseobacterium hominis Bacteroidetes Rare neg S(25KB) vr(10KB)
Chryseobacterium indologenes Bacteroidetes Rare neg M(30KB) M(25KB) S(25KB) R(2KB) R(10KB) R(300KB)
Chryseobacterium oranimense Bacteroidetes Rare neg
Chryseobacterium taklimakanense Bacteroidetes Rare neg S(30KB) S(300KB) S(30KB) S(30KB) S(2KB) S(2KB) S(30KB)
Chryseobacterium viscerum Bacteroidetes Non neg
Chryseomicrobium amylolyticum Firmicutes Rare +
Citrobacter amalonaticus Proteobacteria Rare neg S S S S R R R S R
Citrobacter braakii Proteobacteria Rare neg S S S(32) S M(2/38) R R R S R
Citrobacter europaeus Proteobacteria Rare neg
Citrobacter farmeri Proteobacteria Minor neg S S S S R R R S R
Citrobacter freundii Proteobacteria Minor neg S S S(32) S(200) R(19.5) R M(2/38) R R R S R
Citrobacter gillenii Proteobacteria Rare neg S S S S R R R S R
Citrobacter intermedius Proteobacteria Unlikely neg vr(50) S(200)
Citrobacter koseri Proteobacteria Minor neg S S S(32) S R M(2/38) R R(>32/>32), W(>32) R S R
Citrobacter murliniae Proteobacteria Rare neg S S S S R R R S R
Citrobacter pasteurii Proteobacteria Rare neg
Citrobacter portucalensis Proteobacteria Rare neg
Citrobacter rodentium Proteobacteria Rare neg
Citrobacter sedlakii Proteobacteria Rare neg S S S(32) S M(2/38) R R R S R
Citrobacter werkmanii Proteobacteria Rare neg S(32) M(2/38)
Citrobacter youngae Proteobacteria Rare neg S S S(32) S M(2/38) R R R S R
Citroniella saccharovorans Firmicutes Rare +
Cloacibacillus evryensis Synergistetes Minor neg S(0.06-0.5) R S(0.25-0.5)
Cloacibacillus porcorum Synergistetes Rare neg S(0.5) R(512) S(0.5) S(<4)
Cloacibacterium normanense Bacteroidetes Rare neg S(30KB)
Clostridioides difficile Firmicutes Widespread + S(2/4), W(0.125–>32) R(96) R S(0.25/0.5), W(0.125-0.5) R R R R(32) R M(6) R(>32) S(0.25/0.25), W(0.125-0.5) S(0.25/0.25), W(0.125-0.25) S(1/1), W(0.06-2) M(0.25/8), W(0.06->32) R S(1/2), W(0.5-4) R(>1024) S(0.0156-1)
Clostridioides mangenotii Firmicutes Rare + S S
Clostridium acetobutylicum Firmicutes Rare +
Clostridium amazonense Firmicutes Rare +
Clostridium amazonitimonense Firmicutes Rare +
Clostridium aminobutyricum Firmicutes Rare +
Clostridium aminophilum Firmicutes Rare +
Clostridium amylolyticum Firmicutes Rare +
Clostridium anorexicamassiliense Firmicutes Rare +
Clostridium argentinense Firmicutes Rare +
Clostridium aurantibutyricum Firmicutes Rare +
Clostridium autoethanogenum Firmicutes Rare +
Clostridium baratii Firmicutes Minor + S(1/2), W(0.25-2) S(0.25/1), W(0.06–8) S(1/2), W(0.06-8) M(2/16), W(0.06->32) M(0.5/2), W(0.03-2)
Clostridium beijerinckii Firmicutes Minor +
Clostridium boliviensis Firmicutes Rare +
Clostridium bornimense Firmicutes Rare vr
Clostridium botulinum Gp I Firmicutes Unlikely +
Clostridium botulinum Gp II Firmicutes Unlikely +
Clostridium botulinum Gp III Firmicutes Unlikely +
Clostridium botulinum Gp IV Firmicutes Unlikely +
Clostridium budayi Firmicutes Rare +
Clostridium butyricum Firmicutes Widespread + S(2/4), W(0.5-4) S(0.5/2), W(0.02-2) S(0.125/0.5), W(0.015-1) S(0.25/1), W(0.06–8) S(0.5/2), W(0.25->32) S(0.06/4), W(0.02-8) S(0.5/2), W(0.03-2)
Clostridium cadaveris Firmicutes Rare + S(2/4), W(0.125–>32) S(0.12/0.5), W(0.12-1) S(0.03/0.06), W(0.008-0.06) S(0.125/0.5), W(0.015-1) S(0.06/0.5), W(0.06-4) S(1/2), W(0.5-2) S(0.06/4), W(0.02-8) M(1/8), W(0.06-16)
Clostridium cagae Firmicutes Rare +
Clostridium carboxidivorans Firmicutes Rare +
Clostridium carnis Firmicutes Rare +
Clostridium celatum Firmicutes Minor +
Clostridium cellulosi Firmicutes Unlikely neg
Clostridium cellulovorans Firmicutes Rare neg
Clostridium chartatabidum Firmicutes Rare +
Clostridium chauvoei Firmicutes Rare +
Clostridium cochlearium Firmicutes Minor + S(2/4), W(0.125–>32) S(0.5/2), W(0.02-2) S(0.125/0.5), W(0.015-1) S(0.25/1), W(0.06–8) S(0.5/2), W(0.25->32) S(0.06/4), W(0.02-8) S(1/8), W(0.06-16)
Clostridium cocleatum Firmicutes Rare +
Clostridium colicanis Firmicutes Rare neg S(2) W(2-32)
Clostridium colinum Firmicutes Rare +
Clostridium combesii Firmicutes Rare + S(12) S(0.25/4), W(0.03->128) S(0.125/0.125), W(0.06–0.25) S(0.5/2), W(0.25–2) S(0.03/0.5), W(0.03)
Clostridium culturomicium Firmicutes Rare + S S
Clostridium dakarense Firmicutes Rare + S R S
Clostridium diolis Firmicutes Rare +
Clostridium disporicum Firmicutes Minor + S(1) S(0.5)
Clostridium drakei Firmicutes Unlikely +
Clostridium estertheticum Firmicutes Unlikely +
Clostridium fallax Firmicutes Rare + S(0.5/2), W(0.02-2) S(0.125/0.5), W(≤0.015-1) S(0.5/2), W(0.25->32) M(1/8), W(0.06-16)
Clostridium felsineum Firmicutes Rare +
Clostridium fessum Firmicutes Rare +
Clostridium gasigenes Firmicutes Unlikely +
Clostridium haemolyticum Firmicutes Rare +
Clostridium herbivorans Firmicutes Rare +
Clostridium hylemonae Firmicutes Minor + S(0.25/1), W(0.06–1) S(1/2), W(0.25–32) M(2/16), W(0.06–>32)
Clostridium ihumii Firmicutes Rare + S R S
Clostridium innocuum Firmicutes Widespread + S(8/16), W(8–16) S(0.12/0.5), W(0.12-1) S(0.25/0.25), W(0.125-0.5) S(0.5/1), W(0.125–1) S(8/16), W(1–16) M(0.5/>32), W(0.25->32) M(4/8), W(2-8)
Clostridium intestinale Firmicutes Rare +
Clostridium isatidis Firmicutes Unlikely + R
Clostridium jeddahense Firmicutes Rare + S R S
Clostridium jeddahitimonense Firmicutes Rare + S S S
Clostridium kluyveri Firmicutes Unlikely vr S S
Clostridium leptum Firmicutes Widespread + S(2/4), W(0.125–>32) S(0.25/2), W(0.03–2) S(0.25/1), W(0.06–8) S(1/2), W(0.06-8) S(0.25/0.25), W(0.03–8) S(0.5/2), W(0.03-2)
Clostridium magnum Firmicutes Rare neg
Clostridium malenominatum Firmicutes Rare + S(0.5/2), W(0.02-2) S(1/4), W(0.25–16) M(0.5/16), W(0.03–32) S(1/4), W(0.06–8)
Clostridium manihotivorum Firmicutes Rare +
Clostridium massiliamazoniense Firmicutes Rare +
Clostridium massiliodielmoense Firmicutes Rare +
Clostridium mediterraneense Firmicutes Rare +
Clostridium merdae Firmicutes Rare +
Clostridium metallolevans Firmicutes Rare +
Clostridium methoxybenzovorans Firmicutes Rare +
Clostridium methylpentosum Firmicutes Moderate +
Clostridium minihomine Firmicutes Rare +
Clostridium moniliforme Firmicutes Rare + S(12) S(1/2), W(0.25-4) S(0.06/1), W(0.03–32) S(0.5/0.5), W(0.06-8)
Clostridium neonatale Firmicutes Minor + S S S
Clostridium niameyense Firmicutes Rare + S R R S S S R
Clostridium nigeriense Firmicutes Rare +
Clostridium nitritogenes Firmicutes Rare +
Clostridium novyi A Firmicutes Rare + S S(0.5/2), W(0.02-2) S(0.125/0.5), W(0.015-1) S(0.25/1), W(0.06–8) S(0.5/2), W(0.25->32) S(0.06/4), W(0.02-8)
Clostridium oceanicum Firmicutes Rare +
Clostridium paraputrificum Firmicutes Moderate + S(0.5/2), W(0.02-2) S(0.03/0.06), W(0.008-0.06) S(0.125/0.5), W(≤0.015-1) S(0.06/0.5), W(0.06-4) S(1/2), W(0.5-2) S(0.06/4), W(0.02-8) R(>32/>32), W(16->32)
Clostridium pasteurianum Firmicutes Rare + S S
Clostridium perfringens Firmicutes Widespread + S(1/2), W(0.5-2) M(24) R S(1/2), W(0.5-2) S R R R(>1024) R R(>32) S(3) S(0.06/0.125), W(0.03-0.125) S(0.06/0.125), W(0.03-0.25) S(0.5/1), W(0.25-2) S(0.5/4), W(0.02->256) S S(1/1), W(0.25-1) R(>1024) S
Clostridium phoceensis Firmicutes Rare neg
Clostridium polyendosporum Firmicutes Rare +
Clostridium polynesiense Firmicutes Rare + S(0.38) S(1) S(0.19)
Clostridium polysaccharolyticum Firmicutes Rare neg
Clostridium populeti Firmicutes Rare neg
Clostridium punense Firmicutes Rare + R R R R
Clostridium putrefaciens Firmicutes Minor +
Clostridium rectalis Firmicutes Rare +
Clostridium roseum Firmicutes Rare +
Clostridium saccharobutylicum Firmicutes Unlikely +
Clostridium saccharoperbutylacetonicum Firmicutes Rare +
Clostridium sardiniense Firmicutes Rare + S(4) R(32)
Clostridium sartagoforme Firmicutes Minor + S(0.25/1), W(0.06–1) S(1/2), W(0.25–32) M(2/16), W(0.06–>32)
Clostridium saudiense Firmicutes Minor + S S S
Clostridium scatologenes Firmicutes Rare +
Clostridium schirmacherense Firmicutes Unlikely +
Clostridium scindens Firmicutes Moderate + R(12) S(0.25/2), W(0.03–2) S(1/2), W(0.25–32) S(1/8), W(0.06–8)
Clostridium senegalense Firmicutes Rare + S R S
Clostridium septicum Firmicutes Rare + S(2/4), W(0.5-4) M(1/>128), W(0.12->128) S(0.5/4), W(0.03-4)
Clostridium sporogenes Firmicutes Minor + S(2/4), W(0.5-4) S(0.12/0.5), W(0.12-1) S(0.25/1), W(0.06–8) S(1/2), W(0.06-8) S(0.5/4), W(0.03-4) S(0.5/2), W(0.03-2)
Clostridium sporosphaeroides Firmicutes Minor +
Clostridium subterminale Firmicutes Rare + S(0.5/1), W(0.03–1) S(0.03/2), W(0.015–8) S(0.25/1), W(0.06–8) S(1/2), W(0.06-8) M(1/16), W(0.03–32) S(0.5/2), W(0.03-2)
Clostridium sulfidigenes Firmicutes Rare +
Clostridium symbiosum Firmicutes Widespread neg S(2/4), W(0.125–>32) S(0.25/2), W(0.03–2) S(0.25/1), W(0.06–8) S(1/2), W(0.06-8) S(1/8), W(0.06–8) S(0.5/2), W(0.03-2)
Clostridium taeniosporum Firmicutes Unlikely +
Clostridium tertium Firmicutes Moderate + S(2/4), W(0.125–>32) S(1/1), W(0.25-2) S(0.06/0.5), W(0.06-4) S(1/2), W(0.5-2) M(1/8), W(0.03-8) R(>32/>32), W(16->32)
Clostridium tetani Firmicutes Unlikely +
Clostridium thermarum Firmicutes Unlikely +
Clostridium thermobutyricum Firmicutes Rare vr
Clostridium thiosulfatireducens Firmicutes Rare +
Clostridium transplantifaecale Firmicutes Rare +
Clostridium tyrobutyricum Firmicutes Rare +
Clostridium vincentii Firmicutes Rare +
Clostridium viride Firmicutes Rare +
Colibacter massiliensis Firmicutes Rare + R R R R
Colidextribacter massiliensis Firmicutes Rare neg
Collinsella aerofaciens Actinobacteria Widespread + S(2/8), W(0.25–8) R S(0.125/1), W(≤0.03-2) S R R R R R S(0.125/0.125), W(0.06–0.25) S(0.5/2), W(0.25-2) S(0.25/0.25), W(≤0.03-0.25) S M(0.25/4), W(0.03-16) R S
Collinsella bouchesdurhonensis Actinobacteria Minor + S(0.064) S(0.016) S(1) R(2) R(>256)
Collinsella ihumii Actinobacteria Rare +
Collinsella intestinalis Actinobacteria Moderate +
Collinsella massiliensis Actinobacteria Rare + S R S
Collinsella phocaeensis Actinobacteria Rare neg
Collinsella provencensis Actinobacteria Rare +
Collinsella stercoris Actinobacteria Minor +
Collinsella tanakaei Actinobacteria Minor +
Collinsella vaginalis Actinobacteria Rare +
Comamonas aquatica Proteobacteria Non neg
Comamonas denitrificans Proteobacteria Rare neg S(30KB)
Comamonas kerstersii Proteobacteria Rare neg S
Comamonas koreensis Proteobacteria Unlikely neg
Comamonas terrigena Proteobacteria Unlikely neg S
Comamonas testosteroni Proteobacteria Rare neg
Comamonas thiooxydans Proteobacteria Rare neg
Companilactobacillus alimentarius Firmicutes Rare +
Companilactobacillus farciminis Firmicutes Rare +
Companilactobacillus mindensis Firmicutes Unlikely +
Companilactobacillus versmoldensis Firmicutes Unlikely +
Conexibacter woesei Actinobacteria Rare + M(30KB) S(300KB) R(5KB) S(30KB) M(30KB) R(2KB) S(30KB) S(300U)
Congobacterium massiliense Firmicutes Rare +
Coprobacillus cateniformis Firmicutes Moderate +
Coprobacter fastidiosus Bacteroidetes Moderate neg S(10KB) S(5KB) S(25KB) S(30KB) S(2KB) S(10KB)
Coprobacter secundus Bacteroidetes Moderate neg S(5KB) S(30KB) S(2KB) S(10KB)
Coprobacter secundus subsp. similis Bacteroidetes Rare neg
Coprococcus catus Firmicutes Widespread +
Coprococcus comes Firmicutes Widespread + S R S S R R R R R S S S S S
Coprococcus eutactus Firmicutes Widespread +
Coprococcus phoceensis Firmicutes Rare vr
Coraliomargarita akajimensis Verrucomicrobia Non neg
Coriobacterium glomerans Actinobacteria Unlikely +
Corynebacterium accolens Actinobacteria Rare + S(30KB) R S(2/2), W(0.125–2) R(2/>64), W(0.06–>64) S(0.06/0.25), W(0.03–0.5) S(100U)
Corynebacterium afermentans Actinobacteria Rare + R vr S(0.25/0.5), W(0.25-1) S(0.25/0.5), W(0.03-2) R(>64/>128), W(0.12->128) S(0.03/1), W(0.03-8) S
Corynebacterium ammoniagenes Actinobacteria Rare + S S S vr S
Corynebacterium amycolatum Actinobacteria Rare + S(0.25/0.5), W(0.25-0.5) S(0.5/0.5), W(0.12-0.5) S(0.5/0.5), W(0.25-0.5) R(>64/>64), W(0.5->64) R(>128/>128), W(>128-) S(0.03/1), W(0.03-8)
Corynebacterium appendicis Actinobacteria Rare +
Corynebacterium argentoratense Actinobacteria Rare + S(2/2), W(0.125–2)
Corynebacterium aurimucosum Actinobacteria Rare + S(0.5/0.5), W(0.125–1) R(>64/>64), W(>64–>64) S(0.5/2), W(0.06–2)
Corynebacterium bouchesdurhonense Actinobacteria Rare +
Corynebacterium bovis Actinobacteria Rare +
Corynebacterium callunae Actinobacteria Unlikely +
Corynebacterium casei Actinobacteria Rare +
Corynebacterium coyleae Actinobacteria Rare + S S S vr
Corynebacterium cystitidis Actinobacteria Rare + R(500U)
Corynebacterium diphtheriae Actinobacteria Non vr
Corynebacterium doosanense Actinobacteria Rare +
Corynebacterium durum Actinobacteria Minor + S S
Corynebacterium efficiens Actinobacteria Rare +
Corynebacterium falsenii Actinobacteria Rare + S(1-2) R(>256) S(1-2) S(0.03)
Corynebacterium flavescens Actinobacteria Rare vr
Corynebacterium freneyi Actinobacteria Rare + R S(vr) S S
Corynebacterium genitalium Actinobacteria Rare + S(5) S(2)
Corynebacterium glaucum Actinobacteria Rare +
Corynebacterium glucuronolyticum Actinobacteria Rare + S(0.25/1), W(0.03–1) S(0.25/0.5), W(0.25–0.5) R(>8/>8), W(2–>8) S(0.125/0.5), W(0.06–0.5) R
Corynebacterium glutamicum Actinobacteria Rare +
Corynebacterium ihumii Actinobacteria Rare + R S S
Corynebacterium jeddahense Actinobacteria Rare + R R S
Corynebacterium jeikeium Actinobacteria Rare + S(0.25/1), W(0.03–1) S(0.5/0.5), W(0.5-0.5) R(>8/>8), W(2–>8) S(0.25/0.5), W(0.125-0.5)
Corynebacterium kroppenstedtii Actinobacteria Minor + S S
Corynebacterium lipophiloflavum Actinobacteria Rare + S(2) R(>256) S(0.5) S(0.5) S(0.125) S(0.125)
Corynebacterium lujinxingii Actinobacteria Rare +
Corynebacterium matruchotii Actinobacteria Unlikely +
Corynebacterium minutissimum Actinobacteria Rare + S(0.25/0.5), W(0.25-0.5) S(0.5/0.5), W(0.25-0.5) R(>32/>32), W(0.02->32) M(>2/>128), W(0.5->128) S(0.03/1), W(0.03-8)
Corynebacterium mucifaciens Actinobacteria Rare + M(8), W(4-128) R(>256) S(0.5), W0.25-0.5) S(0.5) R(>32), W(0.25->32) S(0.25), W0.125-0.5)
Corynebacterium neomassiliense Actinobacteria Rare +
Corynebacterium otitidis Actinobacteria Rare + S(0.5-2) R(512) R(64-256) R(128-1024) S(1-8) R S(0.25-1) S(1-2) S(0.06-2) S(0.06-8) S(0.13-2)
Corynebacterium pacaense Actinobacteria Rare +
Corynebacterium propinquum Actinobacteria Rare + M(2->32) S(0.5/9.5,vr), W(<0.5->76) S(2/2), W(0.125–2) R(0.12->2,vr) S(0.006-0.5)
Corynebacterium provencense Actinobacteria Rare +
Corynebacterium pseudodiphtheriticum Actinobacteria Rare + S(2-4) S(0.5/9.5,vr), W(<0.5->76) S(0.05-1) R(0.12->2,vr) S(0.25/0.5), W(0.125-0.5)
Corynebacterium pseudogenitalium Actinobacteria Rare + S(30KB) R S(1000KB) S S S S(0.25/0.5), W(0.25–1) S(2KB) R S(0.06/0.25), W(0.03–0.5) S(300U)
Corynebacterium pyruviciproducens Actinobacteria Rare + S S
Corynebacterium riegelii Actinobacteria Rare + S(1-4) R(>256) S(0.5) S(0.03)
Corynebacterium sanguinis Actinobacteria Rare + S(0.25/0.5), W(0.25–1) R(2KB,vr) S(0.06/0.25), W(0.03–0.5)
Corynebacterium simulans Actinobacteria Rare + S(0.25/1), W(0.03–1) S(0.25/0.5), W(0.25–0.5) R(>8/>8), W(2–>8) S(0.125/0.5), W(0.06–0.5) S
Corynebacterium singulare Actinobacteria Rare +
Corynebacterium stationis Actinobacteria Rare + S S S S S
Corynebacterium striatum Actinobacteria Rare + S(0.25/0.5), W(0.015-1) S(0.25/0.25), W(0.12-0.5) S(0.25/0.5), W(0.125-0.5) R(>16/>16), W(0.12->16) R(>128/>128), W(0.25->128) S(0.25/0.5), W(0.125-0.5)
Corynebacterium suicordis Actinobacteria Rare +
Corynebacterium sundsvallense Actinobacteria Rare + S(30KB)
Corynebacterium tuberculostearicum Actinobacteria Rare + R(300KB) S(0.5/0.5), W(0.125–1) R(2KB,vr) S(0.5/2), W(0.06–2)
Corynebacterium ulcerans Actinobacteria Rare + S(2/2), W(0.125–2)
Corynebacterium urealyticum Actinobacteria Rare + S(0.25/1), W(0.03–1) S(0.25/0.5), W(0.25–0.5) R(>8/>8), W(2–>8) S(0.125/0.5), W(0.06–0.5)
Corynebacterium ureicelerivorans Actinobacteria Rare +
Corynebacterium urinapleomorphum Actinobacteria Rare +
Corynebacterium variabile Actinobacteria Unlikely +
Corynebacterium wankanglinii Actinobacteria Rare +
Corynebacterium xerosis Actinobacteria Rare + S(0.25/0.5), W(0.06-2) R(2/>64), W(0.06–>64) M(0.25/8), W(0.03->32)
Crassaminicella thermophila Firmicutes Unlikely +
Criibacterium bergeronii Firmicutes Rare vr
Cronobacter condimenti Proteobacteria Unlikely neg S(30KB) S(2.5KB)
Cronobacter muytjensii Proteobacteria Rare neg
Cronobacter sakazakii Proteobacteria Minor neg S(4-8) W(8-32) vr(250) S(0.25) S(10,vr)
Cronobacter turicensis Proteobacteria Rare neg
Cruoricaptor ignavus Bacteroidetes Rare neg S R R R S R
Cryptobacterium curtum Actinobacteria Minor +
Culturomica massiliensis Bacteroidetes Rare neg
Cupriavidus metallidurans Proteobacteria Unlikely neg R(5KB) R(25KB) vr(300KB)
Curtobacterium flaccumfaciens Actinobacteria Unlikely +
Cutibacterium acnes Actinobacteria Moderate + S(1/2), W(0.5–8) R(32/>32), W(0.125->32) S(1/2), W(1-2) S(0.25/1), W(0.25–>8) S(0.25/0.25), W(0.25-0.5) S(0.5/1), W(0.5-1) S(≤0.03/0.5), W(≤0.03->32) S(0.5/1), W(0.125-1)
Cutibacterium acnes subsp. defendens Actinobacteria Rare +
Cutibacterium avidum Actinobacteria Rare + S(1/2), W(0.5–8) R(32/>32), W(0.125->32) R(>8/>8), W(4->8) S(0.25/0.5), W(0.03-0.5) S(0.5/1), W(0.125–1) S(0.5/0.5), W(0.5-1) S(≤0.03/0.5), W(≤0.03->32) M(2/2), W(1-2)
Cutibacterium granulosum Actinobacteria Minor + R(>32/>32), W(8->32) R(>8/>8), W(8->8) S(0.25/0.5), W(0.03-0.5) S(0.5/1), W(0.125–1) S(0.5/1), W(0.5-1) S(0.015/0.03), W(≤0.015-0.03) S(0.5/2), W(0.125-2)
Cytophaga hutchinsonii Bacteroidetes Rare neg
Dakarella massiliensis Proteobacteria Rare neg S R R S
Dakotella fusiforme Firmicutes Rare +
Dehalobacter restrictus Firmicutes Non neg
Dehalobacterium formicoaceticum Firmicutes Unlikely +
Dehalococcoides mccartyi Chloroflexi Unlikely unk
Deinococcus aquaticus Deinococcus-Thermus Unlikely neg
Deinococcus caeni Deinococcus-Thermus Unlikely neg
Deinococcus geothermalis Deinococcus-Thermus Non +
Deinococcus proteolyticus Deinococcus-Thermus Unlikely +
Deinococcus reticulitermitis Deinococcus-Thermus Unlikely neg
Deinococcus wulumuqiensis Deinococcus-Thermus Unlikely +
Delftia acidovorans Proteobacteria Rare neg
Delftia lacustris Proteobacteria Unlikely neg
Delftia tsuruhatensis Proteobacteria Rare neg
Dellaglioa algida Firmicutes Rare +
Denitrobacterium detoxificans Actinobacteria Rare +
Dermabacter hominis Actinobacteria Rare + vr(0.25-64) vr(8-256) vr(16-128) R R R S(0.06-0.25) S(0.5/1), W(0.25-4) vr(0.03-64) vr(0.06-64) M(0.125/8), W(0.02-8) S(0.13-1)
Dermacoccus barathri Actinobacteria Non +
Dermacoccus nishinomiyaensis Actinobacteria Rare + S(vr) S
Desemzia incerta Firmicutes Rare +
Desnuesiella massiliensis Firmicutes Rare + R(>256) R(>256)
Desulfitobacterium dichloroeliminans Firmicutes Unlikely +
Desulfitobacterium hafniense Firmicutes Minor neg
Desulfococcus multivorans Proteobacteria Rare neg
Desulfocurvibacter africanus Proteobacteria Unlikely neg
Desulfofarcimen acetoxidans Firmicutes Unlikely neg
Desulfomicrobium baculatum Proteobacteria Unlikely neg
Desulfomicrobium orale Proteobacteria Unlikely neg
Desulforamulus reducens Firmicutes Unlikely +
Desulforudis audaxviator Firmicutes Unlikely +
Desulfoscipio gibsoniae Firmicutes Rare neg
Desulfosporosinus youngiae Firmicutes Rare neg
Desulfotomaculum ruminis Firmicutes Unlikely +
Desulfovibrio desulfuricans Proteobacteria Minor neg S(0.25/0.25), W(0.125–0.25) R(>32/>32), W(>32) S(0.25/1), W(0.25–>32) R(>32/>32), W(>32)
Desulfovibrio diazotrophicus Proteobacteria Rare neg
Desulfovibrio fairfieldensis Proteobacteria Minor neg R(>8) S(0.25/0.25), W(0.125–0.25) R(>32/>32), W(>32) S(0.25/1), W(0.25–>32) R(>32/>32), W(>32)
Desulfovibrio intestinalis Proteobacteria Rare neg
Desulfovibrio legallii Proteobacteria Rare + R(200)
Desulfovibrio longreachensis Proteobacteria Rare neg
Desulfovibrio piger Proteobacteria Moderate neg S(2/8), W(0.25–32) S(0.25/0.5), W(0.06–1) M(0.25/>32), W(0.06->32)
Desulfovibrio trichonymphae Proteobacteria Non unk
Desulfovibrio vulgaris Proteobacteria Rare neg S(0.25/0.5), W(0.06–1) S(0.25/1), W(0.06–>32)
Desulfurispirillum indicum Chrysiogenetes Unlikely neg
Desulfurobacterium thermolithotrophum Aquificae Non neg
Devosia chinhatensis Proteobacteria Rare neg S(30KB) S(30KB) R(300U)
Devosia limi Proteobacteria Unlikely neg R(30KB) S(30KB)
Devosia riboflavina Proteobacteria Unlikely neg R(30KB) S(30KB)
Dialister hominis Firmicutes Rare neg S(30KB) R(30KB) S(10KB)
Dialister invisus Firmicutes Moderate neg S(50KB) R(5KB) S(10KB)
Dialister massiliensis Firmicutes Rare neg
Dialister micraerophilus Firmicutes Rare neg S(50KB) R(5KB) R(10KB) S(1000KB)
Dialister pneumosintes Firmicutes Minor neg S(2/8), W(0.25–32) S(0.125/4), W(≤0.03-4) R(5KB) S(≤0.03/2), W(≤0.03-2) R(10KB)
Dialister propionicifaciens Firmicutes Rare neg S(50KB) R(5KB) R(10KB) S(1000KB)
Dialister succinatiphilus Firmicutes Minor neg S(10KB)
Dielma fastidiosa Firmicutes Minor neg S R
Dietzia cercidiphylli Actinobacteria Unlikely +
Dietzia cinnamea Actinobacteria Rare +
Dietzia kunjamensis Actinobacteria Unlikely +
Dietzia maris Actinobacteria Rare +
Dietzia natronolimnaea Actinobacteria Rare + S(25KB) S(30KB) R(5KB) R(300U) S(10KB)
Dolosigranulum pigrum Firmicutes Unlikely +
Dorea faecis Firmicutes Minor
Dorea formicigenerans Firmicutes Widespread + S R S S R R R R R S S S S S
Dorea hylemonae Firmicutes Rare
Dorea longicatena Firmicutes Widespread +
Dorea phocaeensis Firmicutes Rare neg
Dorea scindens Firmicutes Rare
Drancourtella massiliensis Firmicutes Rare + S S R S S S S
Dubosiella newyorkensis Firmicutes Rare +
Duncaniella dubosii Bacteroidetes Unlikely neg
Duncaniella muris Bacteroidetes Rare neg
Duodenibacillus massiliensis Proteobacteria Minor +
Dyadobacter beijingensis Bacteroidetes Unlikely neg S(25KB) S(30KB) S(20KB)
Dyadobacter fermentans Bacteroidetes Unlikely neg S(25KB) S(25KB) R(30KB)
Dysgonomonas capnocytophagoides Bacteroidetes Rare neg M(4) S(1.5) R(256) S(0.125) R(256) R(48) S(0.25)
Dysgonomonas gadei Bacteroidetes Rare neg M(4) S(1.5) R(256) S(0.125) R(256) R(48) S(0.25)
Dysgonomonas massiliensis Bacteroidetes Rare neg R(1024) S(1.5) M(3) R(>32) R(>256) R(>256)
Dysgonomonas mossii Bacteroidetes Rare neg
Dysosmobacter welbionis Firmicutes Moderate neg
Edwardsiella tarda Proteobacteria Minor neg S W(0.5-32) W(4-8) S R(5000) R(312.5) R(32->128) W(4-64) R R R(32-64) S
Eggerthella guodeyinii Actinobacteria Rare +
Eggerthella lenta Actinobacteria Widespread + S(4/8), W(2–8) R S(0.125/1), W(≤0.03-2) S R R R R S S(0.25/0.5), W(0.06-0.5) S(1/2), W(1-2) S(0.25/0.25), W(≤0.03-0.25) S M(2/16), W(0.125-16) S S
Eggerthella sinensis Actinobacteria Rare + S(0.25) M(3)
Eggerthella timonensis Actinobacteria Rare + S(0.19) S(0.125) S(1.5) R(64) R(256)
Eggerthia catenaformis Firmicutes Minor + S(4/16), W(1–>32) R(32/>32), W(0.125->32) M(1/>64), W(0.06–>64) M(8/>32), W(0.25–>32) S(≤0.03/0.5), W(≤0.03->32) M(4/>32), W(0.25->32)
Eikenella corrodens Proteobacteria Rare neg S(1/2), W(1-2) R(>32/>32), W(8->32) S(0.06/0.5), W(≤0.06-0.5) R(9.5/38) S(0.8/0.8), W(8–>8) R(>32/>32), W(8->32) R S(≤0.25-1) S(≤0.25-1)
Eisenbergiella massiliensis Firmicutes Moderate neg
Eisenbergiella tayi Firmicutes Moderate neg S(5KB) S(5KB) R(10KB)
Elizabethkingia meningoseptica Bacteroidetes Unlikely neg vr R R
Elizabethkingia miricola Bacteroidetes Non neg
Ellagibacter isourolithinifaciens Actinobacteria Rare +
Elusimicrobium minutum Elusimicrobia Unlikely neg
Emergencia timonensis Firmicutes Minor +
Empedobacter brevis Bacteroidetes Rare neg
Empedobacter falsenii Bacteroidetes Rare neg S(30KB) S(1.25/24) S(30KB) S(2KB) R S(300U)
Enhydrobacter aerosaccus Proteobacteria Rare neg
Enorma massiliensis Actinobacteria Minor + S S R S
Enorma phocaeensis Actinobacteria Rare neg
Enorma timonensis Actinobacteria Rare + S R S
Ensifer adhaerens Proteobacteria Unlikely neg R(30KB) M(30KB)
Enterobacter asburiae Proteobacteria Minor neg
Enterobacter cancerogenus Proteobacteria Minor neg
Enterobacter cloacae Proteobacteria Moderate neg R(512/1024), W(32–1,024) S(0.06/0.5), W(0.03-32) M(>0.5/>4), W(0.12->4) R(512/1024), W(256–1,024) R(>32/>32), W(>32) R(>64/>128), W(≤1->128)
Enterobacter cloacae subsp. dissolvens Proteobacteria Rare neg
Enterobacter himalayensis Proteobacteria Minor
Enterobacter hormaechei subsp. hormaechei Proteobacteria Minor neg
Enterobacter hormaechei subsp. steigerwaltii Proteobacteria Rare neg
Enterobacter hormaechei subsp. xiangfangensis Proteobacteria Rare neg R(5KB)
Enterobacter kobei Proteobacteria Rare neg
Enterobacter ludwigii Proteobacteria Rare neg S S S
Enterobacter massiliensis Proteobacteria Rare neg R R S S
Enterobacter mori Proteobacteria Rare neg
Enterobacter roggenkampii Proteobacteria Rare neg
Enterobacter soli Proteobacteria Rare neg
Enterobacter timonensis Proteobacteria Rare neg
Enterocloster aldenensis Firmicutes Minor + S(2/4), W(0.5-4) S(0.06/0.125), W(0.06-0.125) S(1/1), W(0.5–1.0) S(2/4), W(1-4) M(2/8), W(0.125–8)
Enterocloster asparagiformis Firmicutes Moderate +
Enterocloster bolteae Firmicutes Widespread + S(2/2), W(1-8) R(362) R S(0.125), W(0.06-1) S R R R(1024) R S(2.0) S(1.5) M(9.8) S(1/1), W(0.5–1.0) S(1/2), W(0.06-4) S M(2/8), W(0.125–8) M(55) S
Enterocloster citroniae Firmicutes Moderate + S(2), W(2-4) S(0.06/0.25), W(0.06–0.5) S(1/1), W(0.5–1.0) M(0.5/32), W(0.06–>128) M(2/8), W(0.125–8)
Enterocloster clostridioformis Firmicutes Widespread + S(2/4), W(1–8) S(0.25/2), W(0.03–2) S(0.03/2), W(0.015–8) S(4/8), W(1–8) S(0.5/1), W(0.25->32) S(0.125), W(0.06-1) S(1/4), W(0.25-8)
Enterocloster lavalensis Firmicutes Minor + S(<0.064) S(<1.5) R(>256) S R(10KB)
Enterococcus asini Firmicutes Rare +
Enterococcus avium Firmicutes Minor + R(>1024/>1024), W(>1024-?) M(≤0.5/4) M(>0.5/>2), W(≤0.5->2) M(>0.5/>16), W(≤0.12->16) S(1/4), W(0.25->64) R(>16/>16), W(≤0.12->16) M(1/4), W(0.03-8)
Enterococcus burkinafasonensis Firmicutes Rare +
Enterococcus caccae Firmicutes Rare +
Enterococcus canintestini Firmicutes Rare +
Enterococcus canis Firmicutes Rare + M(≤0.5/4) R(>8/>8)
Enterococcus casseliflavus Firmicutes Moderate + M(≤0.5/4) M(>0.5/>16), W(≤0.12->16) M(>2/>16), W(0.25->16) R(>16/>16), W(≤0.12->16) M(1/4), W(0.03-8)
Enterococcus cecorum Firmicutes Rare + S(30KB) S(300KB) R(>256) R(30KB) S(30KB) R(>16/>16), W(0.122->16) W(<0.12-128) W(<1-128)
Enterococcus columbae Firmicutes Rare +
Enterococcus devriesei Firmicutes Moderate +
Enterococcus diestrammenae Firmicutes Rare +
Enterococcus dispar Firmicutes Rare +
Enterococcus durans Firmicutes Moderate + S(0.5/>2), W(≤0.5->2) M(0.5/>16), W(≤0.12->16) M(>2/>16), W(0.25->16) R(>16/>16), W(≤0.12->16) M(1/4), W(0.03-8)
Enterococcus eurekensis Firmicutes Rare +
Enterococcus faecalis Firmicutes Widespread + R(>8/>16), W(0.25->16) R(>512/>512), W(>512) S M(≤0.5/4) M(1/>1), W(≤0.5->1) M(>0.5/>16), W(≤0.12->16) R(>16/>16), W(0.5–>16) R(>16/>16), W(2–>16) W(0.39->100) S(1/1), W(0.25-2)
Enterococcus faecium Firmicutes Widespread + R(8/16), W(≤0.12->16) R(>512/>512), W(256->512) M(≤0.5/4) S(>1/>1), W(≤0.5->1) R(128-) S(0.12/0.5), W(0.12-0.5) R(>128/>128), W(25->128) R(>16/>16), W(0.25–>16) M(1/4), W(0.03-8)
Enterococcus gallinarum Firmicutes Rare + S M(≤0.5/4) S(0.5-1) M(>1/>16), W(0.25->16) R(>16/>16), W(≤0.12->16) M(1/4), W(0.03-8)
Enterococcus gilvus Firmicutes Rare +
Enterococcus haemoperoxidus Firmicutes Rare +
Enterococcus hermanniensis Firmicutes Rare +
Enterococcus hirae Firmicutes Minor + W(3.13-50) S(>0.5/>2), W(≤0.5->2) M(>0.5/>16), W(≤0.12->16) M(>1/>16), W(0.25->16) W(0.1->100) M(1/4), W(0.03-8)
Enterococcus italicus Firmicutes Rare + S
Enterococcus lactis Firmicutes Rare + S
Enterococcus malodoratus Firmicutes Rare + S(0.5/2), W(0.125–2)
Enterococcus massiliensis Firmicutes Rare + R R S S R
Enterococcus mediterraneensis Firmicutes Rare +
Enterococcus moraviensis Firmicutes Rare +
Enterococcus mundtii Firmicutes Rare + M(0.5/>16), W(≤0.12->16) M(>1/>16), W(0.25->16) M(1/4), W(0.03-8)
Enterococcus pallens Firmicutes Rare +
Enterococcus phoeniculicola Firmicutes Rare +
Enterococcus pseudoavium Firmicutes Rare +
Enterococcus raffinosus Firmicutes Rare +
Enterococcus saccharolyticus Firmicutes Rare + S R S R R R R R R S S S R S
Enterococcus saigonensis Firmicutes Unlikely +
Enterococcus sulfureus Firmicutes Rare +
Enterococcus thailandicus Firmicutes Rare + R
Enterococcus timonensis Firmicutes Rare + R(12) R(256) S(0.75) S(1) S(2)
Enterococcus villorum Firmicutes Rare +
Enteroscipio rubneri Actinobacteria Rare +
Enterovibrio nigricans Proteobacteria Unlikely neg
Ereboglobus luteus Verrucomicrobia Unlikely neg
Erwinia billingiae Proteobacteria Unlikely neg
Erwinia tasmaniensis Proteobacteria Unlikely neg
Erwinia teleogrylli Proteobacteria Rare neg
Erysipelatoclostridium ramosum Firmicutes Widespread + S(2/4), W(0.5-4) R S(1/2), W(0.25-2) S S(0.03/0.06), W(≤0.008-0.06) R R R R S S(1/1), W(0.25-1) S(≤0.06/0.5), W(≤0.06-4) S(4/8), W(2-8) S(0.5/4), W(≤0.03-4) S R(>32/>32), W(8->32) R S
Erysipelatoclostridium saccharogumia Firmicutes Minor
Erysipelatoclostridium spiroforme Firmicutes Minor
Erysipelothrix larvae Firmicutes Rare +
Escherichia albertii Proteobacteria Minor neg S(30) R
Escherichia coli Proteobacteria Widespread neg S S R R(256/512), W(128–1,024) S R R R R S S R R(128/256), W(64–256) R(>32/>32), W(>32) R S R
Escherichia dysenteriae Proteobacteria Rare
Escherichia fergusonii Proteobacteria Minor neg S vr S R
Escherichia marmotae Proteobacteria Unlikely neg S(50KB) S(25KB) S(300U)
Escherichia ruysiae Proteobacteria Rare neg
Ethanoligenens harbinense Firmicutes Rare +
Eubacterium barkeri Firmicutes Rare + S S R
Eubacterium biforme Firmicutes Moderate +
Eubacterium brachy Firmicutes Rare + S(12) S(0.25/1)W(0.02-1) S(0.25/1), W(0.06-2) S(0.125/0.125), W(0.06–0.25) S(0.5/2)W(0.25-2) S(0.06/0.5), W(0.02-1) M(0.5/16), W(0.06->32)
Eubacterium callanderi Firmicutes Minor +
Eubacterium cellulosolvens Firmicutes Minor +
Eubacterium coprostanoligenes Firmicutes Minor +
Eubacterium dolichum Firmicutes Moderate +
Eubacterium infirmum Firmicutes Rare +
Eubacterium limosum Firmicutes Moderate + S(2/8), W(0.25–8) S(0.25/1), W(0.02-1) S(0.25/1), W(0.06-2) S(0.125/0.125), W(0.06–0.25) S(0.125/0.25), W(0.06-0.25) S(0.06/0.5), W(0.02-1) M(0.5/16), W(0.06->32)
Eubacterium maltosivorans Firmicutes Rare +
Eubacterium multiforme Firmicutes Rare +
Eubacterium nodatum Firmicutes Rare + S(12) R(8/16), W(0.12->64) S(1.6)
Eubacterium oxidoreducens Firmicutes Rare +
Eubacterium plexicaudatum Firmicutes Rare +
Eubacterium pyruvativorans Firmicutes Rare +
Eubacterium ramulus Firmicutes Moderate +
Eubacterium rectale Firmicutes Widespread + S(3) R(>1024) R S(1.5) S R R R(>1024) R R(>32) R(>32) S(0.064) S(1) S(<0.016) S R(32) S
Eubacterium ruminantium Firmicutes Rare +
Eubacterium saphenum Firmicutes Rare +
Eubacterium siraeum Firmicutes Widespread +
Eubacterium sulci Firmicutes Rare + S(12) S(1.6)
Eubacterium tenue Firmicutes Minor + S(0.25/1), W(0.02-1) S(0.25/1), W(0.06-2) S(0.5/2), W(0.25-2) S(0.06/0.5), W(0.02-1) S(0.5/0.5), W(0.06-8)
Eubacterium uniforme Firmicutes Rare +
Eubacterium ventriosum Firmicutes Widespread +
Eubacterium xylanophilum Firmicutes Rare +
Eubacterium yurii Firmicutes Rare + S S
Ewingella americana Proteobacteria Rare neg S S S R
Exiguobacterium aurantiacum Firmicutes Rare + S(10KB) S(5KB)
Exiguobacterium marinum Firmicutes Rare vr
Exiguobacterium mexicanum Firmicutes Rare +
Exiguobacterium undae Firmicutes Rare +
Ezakiella coagulans Bacteroidetes Minor neg
Ezakiella massiliensis Bacteroidetes Rare +
Ezakiella peruensis Firmicutes Rare +
Facklamia hominis Firmicutes Rare + S(2-8) M(0.12-8) S(0.12-1) S(0.06-2)
Facklamia languida Firmicutes Rare + S(2-8) M(0.12-8) S(0.12-1) S(0.06-2)
Faecalibacillus faecis Firmicutes Rare +
Faecalibacillus intestinalis Firmicutes Rare +
Faecalibacterium prausnitzii Firmicutes Widespread neg S S
Faecalibaculum rodentium Firmicutes Rare +
Faecalicatena contorta Firmicutes Minor + S(2/8), W(0.25–8) S(0.25/1), W(0.02-1) S(0.25/1), W(0.06-2) S(0.125/0.125), W(0.06–0.25) S(0.5/2), W(0.25-2) S(0.06/0.5), W(0.02-1) M(1/16), W(0.06->32)
Faecalicatena faecis Firmicutes Moderate
Faecalicatena fissicatena Firmicutes Minor +
Faecalicatena glycyrrhizinilyticum Firmicutes Minor
Faecalicatena gnavus Firmicutes Moderate
Faecalicatena lactaris Firmicutes Moderate
Faecalicatena orotica Firmicutes Minor + S(0.12/0.5), W(0.12-1) S(0.125/0.5), W(≤0.015-1) S(0.5/2), W(0.25->32) S(0.06/4), W(0.02-8) M(1/8), W(0.06-16)
Faecalicatena torques Firmicutes Moderate
Faecalicoccus pleomorphus Firmicutes Minor + R(10)
Faecalimonas umbilicata Firmicutes Rare +
Faecalitalea cylindroides Firmicutes Widespread + S(12) S(0.5/2), W(0.125–4) S(0.5/1), W(0.25–4) S(0.06/1), W(0.06–>128) M(0.5/16), W(0.06–32)
Fannyhessea vaginae Actinobacteria Minor + M(8/32), W(4-64)
Fastidiosipila sanguinis Firmicutes Rare + R(5KB) S(5KB) R(10KB)
Fenollaria massiliensis Firmicutes Minor neg S S
Fenollaria timonensis Firmicutes Rare neg
Fermentimonas caenicola Bacteroidetes Rare neg
Ferrimonas balearica Proteobacteria Rare neg
Fibrobacter succinogenes Fibrobacteres Unlikely neg
Fictibacillus arsenicus Firmicutes Unlikely + S(30KB)
Filifactor alocis Firmicutes Minor neg S(12) S(1.6)
Filifactor villosus Firmicutes Unlikely + S(12)
Finegoldia magna Firmicutes Widespread + M(2/8), W(1-32) S(0.25/1), W(0.125-2) S(≤0.008/0.016), W(≤0.008-0.03) S(0.06/0.125), W(0.015–0.125) S(0.125/0.125), W(≤0.006-0.25) S(0.5/1), W(0.25-1) S(≤0.03/0.5), W(≤0.03->32) S(0.5/1), W(0.125-1)
Flaviflexus massiliensis Actinobacteria Rare +
Flavobacterium banpakuense Bacteroidetes Unlikely neg
Flavobacterium caeni Bacteroidetes Non neg R(30KB) S(30KB) S(30KB) R(300U)
Flavobacterium cheniae Bacteroidetes Rare neg
Flavobacterium daejeonense Bacteroidetes Unlikely neg
Flavobacterium lindanitolerans Bacteroidetes Rare neg R(30KB) S(30KB) S(30KB)
Flavobacterium oncorhynchi Bacteroidetes Unlikely neg
Flavobacterium sakaeratica Bacteroidetes Rare neg
Flavonifractor plautii Firmicutes Widespread vr M(1/>32), W(0.125–>32) M(8) S(0.06/1), W(0.03–1)
Flexispira rappini Proteobacteria Rare neg S S S(vr) S
Flintibacter butyricus Firmicutes Rare neg
Fournierella massiliensis Firmicutes Moderate neg S S S S
Francisella tularensis Proteobacteria Non neg
Franconibacter pulveris Proteobacteria Rare neg
Fredinandcohnia humi Firmicutes Non +
Fretibacterium fastidiosum Synergistetes Rare neg
Fructilactobacillus florum Firmicutes Unlikely +
Fructilactobacillus fructivorans Firmicutes Unlikely +
Fructilactobacillus sanfranciscensis Firmicutes Rare +
Fucophilus fucoidanolyticus Verrucomicrobia Rare neg
Fundidesulfovibrio putealis Proteobacteria Rare neg
Furfurilactobacillus rossiae Firmicutes Unlikely +
Fusicatenibacter saccharivorans Firmicutes Moderate +
Fusobacterium canifelinum Fusobacteria Rare neg S(0.125/0.5), W(0.06–0.5) S(0.06/0.125), W(0.03–0.125)
Fusobacterium gonidiaformans Fusobacteria Minor neg S(1/2), W(0.5–2) S(0.25/4), W(0.125-0.5) R(512/>8,192), W(128–>8,192) S(0.06/0.125), W(≤0.015-2)
Fusobacterium massiliense Fusobacteria Rare neg R(50KB) S(4KB) R(25KB) R(30KB) S(15KB) S(50KB)
Fusobacterium mortiferum Fusobacteria Moderate neg S(2/8), W(0.5-32) S(0.125/0.5), W(<0.125-0.5) S(0.03/0.06), W(0.03-0.125) R(>256/>256), W(64–>256) R(512/1024), W(0.5->1024) S(0.06/0.125), W(0.06-0.125)
Fusobacterium naviforme Fusobacteria Rare neg S(0.125/1), W(≤0.03-2) S(≤0.03/≤0.03), W(≤0.03-0.06)
Fusobacterium necrogenes Fusobacteria Rare neg S(0.5/1), W(0.125-1) S(1/8), W(0.06-8)
Fusobacterium necrophorum Fusobacteria Minor neg S(2/8), W(0.5-32) S(0.125/1), W(≤0.03-2) S(≤0.008-0.016) W(>16-) R(512/1024), W(0.5->1024) S(≤0.03/≤0.03), W(≤0.03-0.06) S(0.01-3.1) R(>32/>32), W(16–>32) W(0.2-12.5) W(8.1-100)
Fusobacterium necrophorum subsp. funduliforme Fusobacteria Rare neg
Fusobacterium nucleatum Fusobacteria Minor neg S(2/8), W(0.5-32) S R S(≤0.03/0.125), W(≤0.03-0.125) S S(0.016/0.03), W(≤0.008-0.03) R R R R R R R(>16/>16), W(16->16) R(>512/>512), W(512->512) S(≤0.03/≤0.03), W(≤0.03-≤0.03) S R(>32/>32), W(16–>32) S S
Fusobacterium nucleatum subsp. animalis Fusobacteria Rare neg S S(0.25/4), W(0.125–0.5) R(5KB) S(0.06/0.125), W(≤0.015–2) S(10KB)
Fusobacterium nucleatum subsp. nucleatum Fusobacteria Minor neg S(1.5) M(4) S(0.125/0.5), W(0.03–2) R(>1024) R(>32) R(>32) R(>256) R(>256) S(<0.016) S(0.75)
Fusobacterium nucleatum subsp. polymorphum Fusobacteria Rare neg S S R(5KB) S(10KB)
Fusobacterium nucleatum subsp. vincentii Fusobacteria Rare neg S S R(5KB) S(10KB)
Fusobacterium perfoetens Fusobacteria Rare neg S(30KB) R(30KB) S(2KB) M(10KB) M(300U)
Fusobacterium periodonticum Fusobacteria Minor neg R(5) S(5)
Fusobacterium pseudoperiodonticum Fusobacteria Unlikely neg
Fusobacterium russii Fusobacteria Minor neg S(0.125/0.25), W(≤0.015-0.25) R(512/>8,192), W(128–>8,192) S(0.03/0.05), W(≤0.015-0.125)
Fusobacterium ulcerans Fusobacteria Rare neg S(0.5/1), W(0.125–1) S(1/8), W(0.06–8)
Fusobacterium varium Fusobacteria Moderate neg S(2/8), W(0.5-32) S(0.25/0.5), W(0.25-0.5) S(0.5/1), W(0.25-1.0) R(>256/>256), W(64–>256) R(512/1024), W(0.5->1024) M(4/16), W(2->16)
Gabonia massiliensis Bacteroidetes Rare neg R S R R R
Gabonibacter massiliensis Bacteroidetes Minor neg S S R R
Gabonibacter timonensis Bacteroidetes Rare +
Gallibacterium anatis Proteobacteria Rare neg
Gardnerella leopoldii Actinobacteria Unlikely neg
Gardnerella vaginalis Actinobacteria Minor neg R(vr) R(>8/>32), W(<0.25->32) S(0.03/0.125), W(0.03-0.25) R
Gemella asaccharolytica Firmicutes Rare vr S(5KB) R(10KB)
Gemella haemolysans Firmicutes Minor + S R S S S
Gemella morbillorum Firmicutes Minor + S(0.25/2), W(0.06–>128) S(0.125/0.25), W(0.06–0.5) S(0.5/0.5), W(0.125-1) M(2/>256), W(0.016->256) S(0.25/2), W(≤0.03-16)
Gemella sanguinis Firmicutes Minor +
Gemmatimonas groenlandica Gemmatimonadetes Non neg R(25KB)
Gemmiger formicilis Firmicutes Moderate neg
Gemmiger variabile Firmicutes Moderate
Geobacillus stearothermophilus Firmicutes Unlikely + I
Geobacillus vulcani Firmicutes Unlikely +
Geodermatophilus obscurus Actinobacteria Non +
Georgenia muralis Actinobacteria Rare +
Georgenia satyanarayanai Actinobacteria Unlikely + S(30KB) S(30KB) S(30KB)
Geosporobacter ferrireducens Firmicutes Unlikely neg
Gleimia europaea Actinobacteria Rare + S(0.5/1),W(0.25-1) R(>32/>32), W(0.25->32) S(0.125/0.25),W(0.0625-0.25) S(1/1),W(0.5-1) M(0.032/0.032),W(0.016->32) M(2/32), W(0.03->32)
Globicatella sulfidifaciens Firmicutes Rare vr R R
Glutamicibacter arilaitensis Actinobacteria Unlikely +
Glutamicibacter protophormiae Actinobacteria Rare +
Gorbachella massiliensis Firmicutes Rare neg
Gordonia alkanivorans Actinobacteria Rare + S(30KB) S(100KB) R(2KB) M(300U)
Gordonia rubripertincta Actinobacteria Unlikely +
Gordonia terrae Actinobacteria Rare + S(0.125) R(8)
Gordonibacter massiliensis Actinobacteria Rare +
Gordonibacter pamelaeae Actinobacteria Moderate +
Gordonibacter urolithinfaciens Actinobacteria Minor +
Gorillibacterium timonense Firmicutes Rare neg
Gottschalkia acidurici Firmicutes Unlikely +
Gracilibacillus dipsosauri Firmicutes Rare +
Gracilibacillus massiliensis Firmicutes Rare + R S S
Gracilibacillus phocaeensis Firmicutes Rare +
Gracilibacillus thailandensis Firmicutes Non + R(30KB) S(30KB)
Gracilibacillus timonensis Firmicutes Rare +
Granulicatella adiacens Firmicutes Minor + R(16->256) S(0.25-0.5)
Granulicatella elegans Firmicutes Minor + W(0.5->512) S(0.5-4)
Granulicatella para-adiacens Firmicutes Rare + S(<0.25) S(1.5)
Grimontia hollisae Proteobacteria Rare neg S(30KB) S(250KB) S(10KB) S(50U)
Gulosibacter bifidus Actinobacteria Unlikely +
Haemophilus ducreyi Proteobacteria Rare neg
Haemophilus haemolyticus Proteobacteria Minor neg
Haemophilus influenzae Proteobacteria Minor neg S(0.5/8), W(0.25-16) W(100->1000) S(0.2-0.8) M(0.25/8), W(<0.25->8) W(>200) R(8/>32), W(2–>32) W(4-16) S(0.4-0.8) S(0.8-) R(8/16), W(2->16)
Haemophilus parahaemolyticus Proteobacteria Minor neg
Haemophilus parainfluenzae Proteobacteria Widespread neg S(0.5/2), W(0.5-2) S(0.06/1), W(0.06->2) S(0.8/0.8), W(≤0.015–>8) M(2/>256), W(0.016->256)
Haemophilus paraphrohaemolyticus Proteobacteria Rare neg S(10KB)
Haemophilus pittmaniae Proteobacteria Minor neg
Haemophilus quentini Proteobacteria Rare neg S S
Haemophilus sputorum Proteobacteria Minor neg
Hafnia alvei Proteobacteria Minor neg R S(≤0.5/≤0.5), W(≤0.5->2) R(>32/>32), W(>32) S(vr) S(vr) S
Hafnia paralvei Proteobacteria Rare neg
Hahella ganghwensis Proteobacteria Rare neg
Halanaerobaculum tunisiense Firmicutes Unlikely neg
Halobacillus dabanensis Firmicutes Unlikely +
Halobacillus ihumii Firmicutes Rare + S R R S S
Halobacillus karajensis Firmicutes Non + S(30KB) M(5KB)
Halobacillus massiliensis Firmicutes Unlikely +
Halobacillus salinus Firmicutes Rare +
Halobacillus trueperi Firmicutes Unlikely +
Halobacteroides halobius Firmicutes Unlikely neg
Haloferax alexandrinus Euryarchaeota Unlikely neg R(30KB) S(30KB)
Haloferax massiliensis Euryarchaeota Rare neg
Haloimpatiens massiliensis Firmicutes Rare +
Halomonas massiliensis Proteobacteria Rare neg
Halomonas muralis Proteobacteria Non neg R R R
Halomonas salina Proteobacteria Non neg S(30KB) M(25KB) R(2U) S(50KB) S(300U)
Halomonas utahensis Proteobacteria Unlikely neg S(30KB)
Halopseudomonas bauzanensis Proteobacteria Unlikely neg S(30KB)
Halopseudomonas pelagia Proteobacteria Unlikely neg S(20KB) R(20KB) S(25KB)
Haploplasma axanthum Tenericutes Unlikely neg
Harryflintia acetispora Firmicutes Rare neg
Hathewaya histolytica Firmicutes Rare + S(0.5/0.5), W(≤0.125-1) S(0.03/0.06), W(≤0.008-0.06) S(≤0.06/0.5), W(≤0.06-4) S(1/2), W(0.5-2) S(1/8), W(0.03-8)
Hathewaya limosa Firmicutes Rare + S(30KB) vr(2KB) vr(30KB) R(300U)
Hathewaya massiliensis Firmicutes Rare +
Helcobacillus massiliensis Actinobacteria Rare +
Helcococcus sueciensis Firmicutes Rare +
Helicobacter bilis Proteobacteria Unlikely neg S(4)
Helicobacter canadensis Proteobacteria Unlikely neg
Helicobacter canis Proteobacteria Unlikely neg S(4) R
Helicobacter cinaedi Proteobacteria Rare neg S vr S(<4) R S(<8) vr
Helicobacter felis Proteobacteria Non neg S
Helicobacter fennelliae Proteobacteria Rare neg S S S(<4) R S(<8) S
Helicobacter heilmannii Proteobacteria Non neg
Helicobacter macacae Proteobacteria Unlikely neg
Helicobacter pametensis Proteobacteria Rare neg
Helicobacter pullorum Proteobacteria Minor neg W(1-16)
Helicobacter pylori Proteobacteria Non neg S(2/4), W(2-8) M(3.13/6.25), W(0.05-12.5) M(4/16), W(1-128) R R(>100/>100), R(50->100) S(0.39/1.56), W(0.1-50) M(6.4/12.8), W(3.2-12.8) R(8/32), W(2-6.4)
Helicobacter rodentium Proteobacteria Rare neg
Helicobacter winghamensis Proteobacteria Rare neg
Heliomicrobium modesticaldum Firmicutes Unlikely neg
Herbaspirillum autotrophicum Proteobacteria Unlikely neg
Herbaspirillum huttiense Proteobacteria Rare neg R
Herbinix hemicellulosilytica Firmicutes Unlikely +
Herbinix luporum Firmicutes Unlikely +
Herminiimonas contaminans Proteobacteria Unlikely neg
Hespellia porcina Firmicutes Rare +
Hespellia stercorisuis Firmicutes Rare +
Heyndrickxia oleronia Firmicutes Unlikely neg
Heyndrickxia sporothermodurans Firmicutes Unlikely +
Histophilus somni Proteobacteria Rare neg
Holdemanella biformis Firmicutes Moderate + S(1/2), W(0.25–32)
Holdemania filiformis Firmicutes Moderate + R(5KB)
Holdemania massiliensis Firmicutes Minor + S S S
Holophaga foetida Acidobacteria Non neg
Howardella ureilytica Firmicutes Rare +
Hugonella massiliensis Actinobacteria Rare + S S S S S S R
Humisphaera borealis Planctomycetes Unlikely neg
Hungatella effluvii Firmicutes Minor +
Hungatella hathewayi Firmicutes Widespread + M(2/4), W(1-32) S(0.25/0.5), W(0.06-2) S(1/1), W(0.5–1.0) S(0.5/1.5), W(0.06-32) M(2/8), W(0.125–8)
Hungatella saccharolyticum Firmicutes Rare
Hungatella xylanolytica Firmicutes Rare neg
Hydrogenibacillus schlegelii Firmicutes Unlikely vr
Hydrogenoanaerobacterium saccharovorans Firmicutes Rare neg
Hydrogenophaga pseudoflava Proteobacteria Unlikely neg S(30KB) S(30KB) S(300U)
Hydrogenovibrio crunogenus Proteobacteria Unlikely neg
Hymenobacter rigui Bacteroidetes Rare neg
Hymenobacter russus Bacteroidetes Unlikely neg
Hyphomicrobium facile Proteobacteria Rare neg
Ihubacter massiliensis Firmicutes Rare neg
Ihuprevotella massiliensis Bacteroidetes Rare neg
Ileibacterium valens Firmicutes Rare +
Inediibacterium massiliense Firmicutes Rare + R R R R
Intestinibacillus massiliensis Firmicutes Rare neg
Intestinibacter bartlettii Firmicutes Widespread + S(1) R(>64) S(4) S(0.25) R(10KB)
Intestinibaculum porci Firmicutes Unlikely +
Intestinimonas butyriciproducens Firmicutes Moderate + S(0.75) S(0.016) R(>32) S(0.029) S(0.48) S(0.022) R(30)
Intestinimonas gabonensis Firmicutes Rare neg
Intestinimonas massiliensis Firmicutes Moderate neg S(0.5)
Intestinimonas timonensis Firmicutes Rare neg
Isoptericola variabilis Actinobacteria Rare +
Janibacter anophelis Actinobacteria Rare +
Janibacter hoylei Actinobacteria Non +
Janibacter limosus Actinobacteria Unlikely + S(30KB) S(2KB) S(300U)
Janibacter terrae Actinobacteria Rare +
Jeotgalibaca arthritidis Firmicutes Unlikely +
Jeotgalibaca porci Firmicutes Unlikely +
Jeotgalicoccus halotolerans Firmicutes Rare +
Johnsonella ignava Firmicutes Rare neg
Jonquetella anthropi Synergistetes Rare neg
Kalamiella piersonii Proteobacteria Unlikely neg
Kallipyga gabonensis Firmicutes Rare + S R R R R
Kallipyga massiliensis Firmicutes Rare + R S R S
Kandleria vitulina Firmicutes Rare +
Kerstersia gyiorum Proteobacteria Rare neg
Khelaifiella massiliensis Firmicutes Rare +
Kineothrix alysoides Firmicutes Rare neg
Kingella denitrificans Proteobacteria Unlikely neg
Kingella kingae Proteobacteria Rare neg S(<0.03-0.1)
Kingella oralis Proteobacteria Unlikely neg S R(1)
Kiritimatiella glycovorans Kiritimatiellaeota Unlikely neg S(10KB)
Klebsiella aerogenes Proteobacteria Moderate neg R(512/1024), W(32–1,024) M(4/32) R(512/1024), W(256–1,024) R(>32/>32), W(>32)
Klebsiella grimontii Proteobacteria Minor neg
Klebsiella michiganensis Proteobacteria Minor neg
Klebsiella oxytoca Proteobacteria Moderate neg R(512/1024), W(128–1,024) R S R(1024/1024), W(256–1,024) R(>32/>32), W(>32)
Klebsiella pneumoniae Proteobacteria Widespread neg W(12.5-) R(12/32), W(1.5->1024) R(512/1024), W(128–1,024) vr vr R(1024/1024), W(256–1,024) M(2/>256), W(0.016->256) R(32/64), W(0.5-64)
Klebsiella pneumoniae subsp. ozaenae Proteobacteria Rare neg
Klebsiella pneumoniae subsp. rhinoscleromatis Proteobacteria Rare neg
Klebsiella quasipneumoniae subsp. quasipneumoniae Proteobacteria Minor neg
Klebsiella quasivariicola Proteobacteria Minor
Klebsiella variicola Proteobacteria Minor neg
Kluyvera ascorbata Proteobacteria Minor neg M(<4/8), W(1->64) S(250KB,vr) S(10KB)
Kluyvera cryocrescens Proteobacteria Rare neg W(4->64)
Kluyvera georgiana Proteobacteria Rare neg
Kluyvera intermedia Proteobacteria Rare neg
Kocuria carniphila Actinobacteria Unlikely +
Kocuria marina Actinobacteria Rare + S R
Kocuria palustris Actinobacteria Unlikely + S R S S S
Kocuria polaris Actinobacteria Unlikely + S R S S S R
Kocuria rhizophila Actinobacteria Unlikely + S R S S S
Kocuria rosea Actinobacteria Unlikely + S R S S S
Kocuria salsicia Actinobacteria Unlikely +
Kocuria varians Actinobacteria Rare + M S M S
Kosakonia cowanii Proteobacteria Minor neg
Krasilnikoviella flava Actinobacteria Rare +
Kurthia gibsonii Firmicutes Rare + S(25KB) S(200KB) R(1.5KB) R(2KB) S(5KB) S(25KB) vr(100U) S(10KB)
Kurthia massiliensis Firmicutes Rare + R S R S
Kurthia senegalensis Firmicutes Rare + R S S
Kurthia sp. Dielmo Firmicutes Rare +
Kurthia zopfii Firmicutes Rare + S(25KB) S(200KB) R(1.5KB) S(2KB,vr) S(5KB) S(25KB) vr(100U) S(10KB)
Kushneria sinocarnis Firmicutes Unlikely neg R(30KB) S(300KB) R(5KB) R(25KB)
Kytococcus schroeteri Actinobacteria Rare + S R S S
Kytococcus sedentarius Actinobacteria Rare + S R S S
Labilithrix luteola Proteobacteria Non neg S
Lachnoanaerobaculum orale Firmicutes Rare + S(5KB) S(5KB) R(10KB)
Lachnoanaerobaculum saburreum Firmicutes Rare + S(0.06/0.25), W(0.06-0.5) S(0.25/1), W(0.06-2) S(0.5/2), W(0.25-2) S(0.25/0.25), W(≤0.03-0.25) M(0.5/16), W(0.06->32) R(10)
Lachnoanaerobaculum umeaense Firmicutes Rare + S(5) S(5) R(10)
Lachnobacterium bovis Firmicutes Rare +
Lachnoclostridium bouchesdurhonense Firmicutes Rare neg
Lachnoclostridium edouardi Firmicutes Minor +
Lachnoclostridium massiliosenegalense Firmicutes Rare +
Lachnoclostridium pacaense Firmicutes Rare vr S S
Lachnoclostridium phocaeense Firmicutes Rare + S S S S R
Lachnoclostridium phytofermentans Firmicutes Minor neg
Lachnoclostridium touaregense Firmicutes Rare +
Lachnospira eligens Firmicutes Widespread + S R S S R R R R R S S S S S
Lachnospira multipara Firmicutes Rare +
Lachnospira pectinoschiza Firmicutes Minor +
Lachnospira rogosae Firmicutes Moderate
Lacrimispora aerotolerans Firmicutes Rare neg
Lacrimispora amygdalina Firmicutes Rare +
Lacrimispora celerecrescens Firmicutes Rare + S(0.25/2), W(0.03–2) S(1)
Lacrimispora indolis Firmicutes Minor neg S(0.25/1), W(0.06–1) S(1/2), W(0.25–32) M(2/16), W(0.06–>32)
Lacrimispora saccharolytica Firmicutes Moderate neg
Lacrimispora sphenoides Firmicutes Minor + S(2/4), W(0.125–>32) S(0.5/1), W(0.03–1) S(0.03/2), W(0.015–8) S(0.25/1), W(0.06–8) S(1/2), W(≤0.06-8) M(1/16), W(0.03–32) M(2/8), W(≤0.03-8)
Lacticaseibacillus casei Firmicutes Rare + S(4/16), W(1–>32) R(>32/>32), W(0.5->32) R(64-≥256) M(>0.5/>32), W(0.06->32) M(1/>64), W(0.06–>64) R(>32/>32), W(>32–>32) S(0.125/2), W(0.02->32) W(0.125-32) M(>2/>32), W(0.25->32) W(0.125-32)
Lacticaseibacillus paracasei Firmicutes Minor + S(1.9) R R(>512/>512), W(2->512) R R R R R S R(256/>512), W(0.5->512) S(≤0.25-4) S S(0.98) R R
Lacticaseibacillus paracasei subsp. tolerans Firmicutes Unlikely +
Lacticaseibacillus paragasseri Firmicutes Unlikely + R(>32/>32), W(1–>32) R(>32/>32), W(0.25–>32) S(2/4), W(0.25–>32)
Lacticaseibacillus rhamnosus Firmicutes Moderate + S(0.5-8) R(>32/>32), W(0.5->32) R(64-≥256) W(2-8) M(>0.5/>32), W(0.06->32) M(1/>64), W(0.06–>64) R(>32/>32), W(>32–>32) S(0.125/2), W(0.02->32) W(≤0.125-2) M(1/16), W(≤0.03-32) W(0.125-32)
Lacticaseibacillus saniviri Firmicutes Unlikely +
Lacticaseibacillus sharpeae Firmicutes Unlikely +
Lacticaseibacillus zeae Firmicutes Unlikely +
Lacticigenium naphtae Firmicutes Non vr S S
Lactiplantibacillus paraplantarum Firmicutes Rare + R(32/>32), W(0.125->32) S(≤0.03/0.5), W(≤0.03->32)
Lactiplantibacillus pentosus Firmicutes Rare +
Lactiplantibacillus plantarum Firmicutes Moderate + S(4/16), W(1–>32) R(>32/>32), W(0.125->32) W(32-≥256) W(≤0.125-8) M(>0.5/>32), W(0.06->32) M(1/>64), W(0.06–>64) M(4/>32), W(0.25–>32) S(0.125/2), W(0.02->32) W(0.125-8) M(1/16), W(≤0.03-32) W(0.125-8)
Lactiplantibacillus xiangfangensis Firmicutes Rare +
Lactobacillus acidophilus Firmicutes Widespread + S(4/16), W(1–>32) R(>32/>32), W(0.5->32) W(4-≥256) W(2-64) M(>0.5/>32), W(0.06->32) M(1/>64), W(0.06–>64) M(4/>32), W(0.25–>32) S(0.125/2), W(0.02->32) W(0.125-4) M(1/16), W(≤0.03-32) S(0.125-1)
Lactobacillus amylolyticus Firmicutes Unlikely +
Lactobacillus amylovorus Firmicutes Minor + W(≤0.12-≥256)
Lactobacillus crispatus Firmicutes Moderate + R(>32/>32), W(2–>32) R(>64/>64), W(0.25–>64) S(0.125/2), W(0.06–4) S(2/4), W(0.25–>32)
Lactobacillus delbrueckii subsp. bulgaricus Firmicutes Rare +
Lactobacillus delbrueckii subsp. delbrueckii Firmicutes Minor + S(4/16), W(1–>32) R(32/>32), W(0.125->32) W(8-≥256) M(1/>64), W(0.06–>64) M(>4/>32), W(0.25->32) S(≤0.03/0.5), W(≤0.03->32) W(0.125-128) M(1/16), W(≤0.03-32) W(0.125-32)
Lactobacillus delbrueckii subsp. lactis Firmicutes Unlikely + R(>128/>128), W(0.5–>128) M(1/>64), W(0.06–>64) M(4/>32), W(0.25–>32) S(0.06/2), W(0.03–>128)
Lactobacillus equicursoris Firmicutes Rare +
Lactobacillus gasseri Firmicutes Moderate + R(>32/>32), W(2–>32) R(>64/>64), W(0.25–>64) S(0.125/2), W(0.06–4) M(4/>32), W(0.25->32)
Lactobacillus gigeriorum Firmicutes Unlikely +
Lactobacillus hamsteri Firmicutes Rare +
Lactobacillus helveticus Firmicutes Rare + S(≤0.12-4)
Lactobacillus hominis Firmicutes Unlikely +
Lactobacillus iners Firmicutes Rare + R(>32/>32), W(1–>32) S(1/2), W(0.25–4.0) S(2/4), W(0.25–>32)
Lactobacillus intestinalis Firmicutes Unlikely +
Lactobacillus jensenii Firmicutes Unlikely + R(>32/>32), W(0.5->32) M(>0.5/>32), W(0.06->32) M(1/>64), W(0.06–>64) S(1/2), W(0.25–4.0) S(0.125/2), W(0.02->32) M(1/16), W(≤0.03-32)
Lactobacillus johnsonii Firmicutes Minor + R(>32/>32), W(2–>32) R(256/>512), W(0.5->512)
Lactobacillus kalixensis Firmicutes Minor +
Lactobacillus kefiranofaciens Firmicutes Rare +
Lactobacillus leichmannii Firmicutes Rare + M(1/>32), W(0.25–>32) S(1/4), W(0.25-8) S(0.5/4), W(0.03->32) M(4/>32), W(0.25->32)
Lactobacillus pasteurii Firmicutes Unlikely +
Lactobacillus psittaci Firmicutes Unlikely +
Lactobacillus rogosae Firmicutes Rare +
Lactobacillus timonensis Firmicutes Unlikely +
Lactobacillus ultunensis Firmicutes Minor +
Lactococcus cremoris Firmicutes Rare + S(0.5/0.5), W(0.5–128)
Lactococcus garvieae Firmicutes Minor +
Lactococcus lactis subsp. lactis Firmicutes Widespread + S(0.5/0.5), W(0.5–128)
Lactococcus petauri Firmicutes Rare +
Lactococcus plantarum Firmicutes Rare +
Lactococcus raffinolactis Firmicutes Minor +
Lactonifactor longoviformis Firmicutes Minor neg R(5) S(0.5)
Lacunisphaera limnophila Verrucomicrobia Unlikely neg
Lagierella massiliensis Firmicutes Rare + R(4) S(0.023) S(0.094) S(0.094)
Lancefieldella parvula Actinobacteria Minor + S(12) S(0.5/2), W(0.125–4) S(1/2), W(0.25–4.0) S(1.6, vr) M(0.5/16), W(0.06–32)
Lancefieldella rimae Actinobacteria Minor + S(12) S(0.5/2), W(0.125–4) S(1/2), W(0.25–32) S(1.6) M(0.5/16), W(0.06–32)
Lapidilactobacillus dextrinicus Firmicutes Non +
Laribacter hongkongensis Proteobacteria Rare neg S R S R R S R
Lascolabacillus massiliensis Bacteroidetes Rare neg
Latilactobacillus curvatus Firmicutes Minor + S(1-4) R(128-≥256) R(≥256-) W(8-64) W(0.5-16) W(4-32)
Latilactobacillus sakei Firmicutes Minor + S(1-4) R(128-≥256) R(≥256-) W(8-64) W(0.5-16) W(4-32)
Latilactobacillus sakei subsp. carnosus Firmicutes Rare +
Lautropia mirabilis Proteobacteria Minor neg
Lawsonella clevelandensis Actinobacteria Rare vr
Lawsonia intracellularis Proteobacteria Unlikely neg
Lawsonibacter asaccharolyticus Firmicutes Moderate + S R S R
Leclercia adecarboxylata Proteobacteria Rare neg S S S
Lederbergia galactosidilyticus Firmicutes Rare +
Lederbergia lentus Firmicutes Unlikely +
Legionella bozemanae Proteobacteria Non neg
Legionella pneumophila Proteobacteria Non neg
Lelliottia amnigena Proteobacteria Rare neg
Lelliottia nimipressuralis Proteobacteria Rare neg
Leminorella grimontii Proteobacteria Rare neg S(30KB) S(250,vr) S(10KB)
Leminorella richardii Proteobacteria Rare neg S(30KB) S(250KB) R S(10KB)
Lentibacillus massiliensis Firmicutes Rare +
Lentibacillus timonensis Firmicutes Rare +
Lentilactobacillus buchneri subsp. buchneri Firmicutes Minor + S(4-) W(0.5-128) R(≥256-) S(≤0.125-1) W(2-32)
Lentilactobacillus diolivorans Firmicutes Unlikely +
Lentilactobacillus farraginis Firmicutes Unlikely +
Lentilactobacillus hilgardii Firmicutes Rare +
Lentilactobacillus kefiri Firmicutes Non +
Lentilactobacillus kisonensis Firmicutes Unlikely +
Lentilactobacillus otakiensis Firmicutes Unlikely +
Lentilactobacillus parabuchneri Firmicutes Rare +
Lentilactobacillus parafarraginis Firmicutes Unlikely +
Lentilactobacillus senioris Firmicutes Unlikely +
Leptospira interrogans Spirochaetes Non neg
Leptotrichia amnionii Fusobacteria Rare neg
Leptotrichia buccalis Fusobacteria Rare neg S(<0.75) S(0.125/1), W(≤0.03-2) R(>256) S(≤0.03/≤0.03), W(≤0.03-0.06) S(10KB)
Leptotrichia hofstadii Fusobacteria Rare neg
Leptotrichia hongkongensis Fusobacteria Rare vr M(8) S(0.5)
Leptotrichia massiliensis Fusobacteria Rare +
Leptotrichia shahii Fusobacteria Rare neg
Leptotrichia wadei Fusobacteria Rare neg
Leucobacter aridicollis Actinobacteria Unlikely +
Leuconostoc carnosum Firmicutes Unlikely +
Leuconostoc citreum Firmicutes Minor + R
Leuconostoc gelidum Firmicutes Rare +
Leuconostoc gelidum subsp. gasicomitatum Firmicutes Non +
Leuconostoc holzapfelii Firmicutes Rare +
Leuconostoc inhae Firmicutes Unlikely +
Leuconostoc kimchii Firmicutes Rare +
Leuconostoc lactis Firmicutes Minor + R
Leuconostoc mesenteroides subsp. cremoris Firmicutes Rare +
Leuconostoc mesenteroides subsp. mesenteroides Firmicutes Minor + R
Leuconostoc pseudomesenteroides Firmicutes Unlikely + R
Levilactobacillus brevis Firmicutes Minor + S(0.125-8) R(>32/>32), W(0.5->32) R(16-≥256) M(>0.5/>32), W(0.06->32) M(1/>64), W(0.06–>64) R(>32/>32), W(>32–>32) S(0.125/2), W(0.02->32) W(0.25-128) M(>2/>32), W(0.25->32) W(0.25-4)
Levilactobacillus brevis subsp. gravesensis Firmicutes Unlikely +
Levilactobacillus namurensis Firmicutes Unlikely +
Levilactobacillus parabrevis Firmicutes Unlikely +
Levyella massiliensis Firmicutes Rare +
Ligilactobacillus acidipiscis Firmicutes Unlikely +
Ligilactobacillus agilis Firmicutes Rare +
Ligilactobacillus animalis Firmicutes Minor +
Ligilactobacillus ceti Firmicutes Unlikely +
Ligilactobacillus equi Firmicutes Unlikely +
Ligilactobacillus murinus Firmicutes Rare +
Ligilactobacillus pobuzihii Firmicutes Unlikely +
Ligilactobacillus ruminis Firmicutes Widespread +
Ligilactobacillus salivarius Firmicutes Widespread + S(2-4) R(>64/>64), W(0.125–>64) W(0.25-64) R(>64/>64), W(0.25–>64) S(0.125/2), W(0.06–4) W(≤0.125-16)
Limnobacter thiooxidans Proteobacteria Unlikely neg
Limnochorda pilosa Firmicutes Unlikely neg
Limosilactobacillus antri Firmicutes Rare + R(>64/>64), W(0.125–>64) R(>64/>64), W(0.25–>64) S(0.125/2), W(0.06–4)
Limosilactobacillus caccae Firmicutes Rare + R(4KB) S(300KB) R(30KB) R(30KB) R(50KB) S(10KB)
Limosilactobacillus coleohominis Firmicutes Unlikely +
Limosilactobacillus fermentum Firmicutes Widespread + S(4/16), W(1–>32) R(>512/>512), W(2->512) R(32-≥256) M(1/>64), W(0.06–>64) M(4/>32), W(0.25–>32) M(0.5/8), W(0.06–>32) W(0.25-8) M(1/16), W(≤0.03-32) W(4-16)
Limosilactobacillus frumenti Firmicutes Non +
Limosilactobacillus gastricus Firmicutes Unlikely +
Limosilactobacillus ingluviei Firmicutes Non +
Limosilactobacillus mucosae Firmicutes Rare +
Limosilactobacillus oris Firmicutes Minor + R(32/>32), W(0.125->32) M(>0.5/>32), W(0.06->32) R(256/>512), W(0.5->512) S(≤0.03/0.5), W(≤0.03->32) M(>2/>32), W(0.25->32)
Limosilactobacillus reuteri Firmicutes Minor + S(2-8) R(>64/>64), W(0.125–>64) W(0.25-≥256) R(>64/>64), W(0.25–>64) S(0.125/2), W(0.06–4) W(≤0.125-16)
Limosilactobacillus vaginalis Firmicutes Rare + R(>32/>32), W(2–>32) R(256/>512), W(0.5->512)
Limosilactobacillus walteri Firmicutes Rare +
Liquorilactobacillus mali Firmicutes Unlikely +
Liquorilactobacillus satsumensis Firmicutes Non +
Liquorilactobacillus vini Firmicutes Unlikely +
Listeria floridensis Firmicutes Rare +
Listeria grayi Firmicutes Rare + S R S
Listeria innocua Firmicutes Rare + S S S
Listeria ivanovii Firmicutes Rare +
Listeria marthii Firmicutes Rare +
Listeria monocytogenes Firmicutes Rare + S(1.95-) R S(0.5/0.5), W(0.25-0.5) S(0.25/0.5), W(0.12-0.5) S(0.12/1), W(≤0.12->16) M(4/4), W(2-8) S
Listeria seeligeri Firmicutes Rare +
Listeria welshimeri Firmicutes Rare +
Litchfieldia alkalitelluris Firmicutes Rare +
Loigolactobacillus bifermentans Firmicutes Unlikely + R(>32/>32), W(2–>32)
Loigolactobacillus coryniformis Firmicutes Minor +
Loigolactobacillus coryniformis subsp. torquens Firmicutes Unlikely +
Longicatena caecimuris Firmicutes Rare +
Lutispora thermophila Firmicutes Unlikely neg
Luxibacter massiliensis Firmicutes Rare +
Lysinibacillus boronitolerans Firmicutes Rare + S(8) R R R R R R
Lysinibacillus fusiformis Firmicutes Rare vr R(8)
Lysinibacillus macroides Firmicutes Unlikely vr
Lysinibacillus meyeri Firmicutes Unlikely + R R
Lysinibacillus sphaericus Firmicutes Rare + R(8,vr)
Lysinibacillus varians Firmicutes Rare +
Lysinibacillus xylanilyticus Firmicutes Rare +
Lysobacter soli Proteobacteria Rare neg
Macellibacteroides fermentans Bacteroidetes Rare + S(10KB)
Macrococcus caseolyticus Firmicutes Unlikely + R(5KB)
Mageeibacillus indolicus Firmicutes Rare vr S(0.25-0.5) S S(0.125) R
Mahella australiensis Firmicutes Unlikely +
Mailhella massiliensis Proteobacteria Rare neg
Mameliella alba Proteobacteria Unlikely neg S S
Mammaliicoccus fleurettii Firmicutes Rare + S(4) S(0.5-20) S(0.5-1.0) S(0.06-0.1) S(0.06-0.5) R R
Mammaliicoccus lentus Firmicutes Rare +
Mammaliicoccus sciuri Firmicutes Rare + S(≤0.5/1) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) M(1.6-12.5)
Mammaliicoccus vitulinus Firmicutes Unlikely + S R
Mannheimia granulomatis Proteobacteria Rare neg
Mannheimia haemolytica Proteobacteria Rare neg
Mannheimia succiniciproducens Proteobacteria Rare neg S
Marasmitruncus massiliensis Firmicutes Rare +
Marseilla massiliensis Bacteroidetes Rare neg
Marseillibacter massiliensis Firmicutes Rare neg
Marvinbryantia formatexigens Firmicutes Moderate +
Massilia aurea Proteobacteria Unlikely neg S(30KB) S(30KB) S(30KB)
Massilia brevitalea Proteobacteria Non neg
Massilia haematophila Proteobacteria Rare neg S(5KB) S(25KB) S(300U)
Massilia norwichensis Proteobacteria Unlikely neg
Massilia timonae Proteobacteria Non neg R(32) S(<0.03) S(<2) S
Massilia varians Proteobacteria Unlikely neg S(5KB) S(25KB) S(300U)
Massilibacillus massiliensis Firmicutes Rare +
Massilibacterium senegalense Firmicutes Rare neg R S
Massilicoli timonensis Firmicutes Rare neg
Massiliimalia massiliensis Firmicutes Rare neg S(0.016) S(1)
Massiliimalia timonensis Firmicutes Minor + S(0.032) S(0.25)
Massilimicrobiota timonensis Firmicutes Moderate neg
Massilioclostridium coli Firmicutes Moderate neg R S R S S R
Massiliprevotella massiliensis Bacteroidetes Rare neg
Massilistercora timonensis Firmicutes Rare neg
Mediterranea massiliensis Bacteroidetes Rare neg R S R R R
Mediterraneibacter faecis Firmicutes Minor +
Mediterraneibacter glycyrrhizinilyticus Firmicutes Minor +
Mediterraneibacter massiliensis Firmicutes Rare + S(0.19) S(0.016) S(2) S(1)
Megalodesulfovibrio gigas Proteobacteria Unlikely neg
Megamonas funiformis Firmicutes Minor neg
Megamonas hypermegale Firmicutes Moderate neg S S(10KB) S(10KB)
Megamonas rupellensis Firmicutes Rare neg S(30KB) S(4KB) R(30KB)
Megasphaera cerevisiae Firmicutes Rare neg
Megasphaera elsdenii Firmicutes Moderate neg R(5KB) S(10KB)
Megasphaera indica Firmicutes Rare neg R(5KB) R(10KB)
Megasphaera massiliensis Firmicutes Rare neg R R R S R
Megasphaera micronuciformis Firmicutes Minor neg S(4KB) S(5KB) S(10KB)
Megasphaera stantonii Firmicutes Rare neg S R S
Meiothermus silvanus Deinococcus-Thermus Unlikely neg
Merdibacter massiliensis Firmicutes Rare neg
Merdimonas faecis Firmicutes Rare +
Mesobacillus jeotgali Firmicutes Rare vr
Mesobacillus subterraneus Firmicutes Rare neg S(10KB) S(10KB)
Mesorhizobium australicum Proteobacteria Unlikely neg S(40KB)
Mesorhizobium jarvisii Proteobacteria Unlikely neg S(300U)
Mesorhizobium loti Proteobacteria Rare neg R
Mesorhizobium muleiense Proteobacteria Unlikely neg
Mesosutterella multiformis Proteobacteria Rare neg
Metabacillus galliciensis Firmicutes Unlikely +
Metabacillus idriensis Firmicutes Rare +
Metabacillus litoralis Firmicutes Rare vr
Metabacillus niabensis Firmicutes Rare +
Metakosakonia massiliensis Proteobacteria Rare neg S(30KB) R(25KB) R(30KB) R(10KB)
Metamycoplasma anseris Tenericutes Unlikely unk
Metaprevotella massiliensis Bacteroidetes Rare neg
Methanobrevibacter arboriphilus Euryarchaeota Rare +
Methanobrevibacter millerae Euryarchaeota Rare +
Methanobrevibacter oralis Euryarchaeota Rare +
Methanobrevibacter ruminantium Euryarchaeota Rare +
Methanobrevibacter smithii Euryarchaeota Moderate +
Methanococcus voltae Euryarchaeota Rare neg
Methanomassiliicoccus intestinalis Euryarchaeota Rare +
Methanomassiliicoccus luminyensis Candidatus Thermoplasmatota Rare +
Methanomethylophilus alvus Candidatus Thermoplasmatota Rare
Methanosphaera stadtmanae Euryarchaeota Minor +
Methylibium petroleiphilum Proteobacteria Unlikely neg
Methylobacterium adhaesivum Proteobacteria Unlikely neg
Methylobacterium brachiatum Proteobacteria Unlikely neg
Methylobacterium jeotgali Proteobacteria Non neg
Methylobacterium mesophilicum Proteobacteria Non neg R(5KB) R R R(10KB)
Methylobacterium organophilum Proteobacteria Unlikely neg
Methylobacterium oryzae Proteobacteria Unlikely neg R
Methylobacterium phyllosphaerae Proteobacteria Unlikely neg R(500)
Methylobacterium radiotolerans Proteobacteria Non neg R R R
Methylomusa anaerophila Firmicutes Unlikely neg
Methylorubrum aminovorans Proteobacteria Rare neg
Methylorubrum extorquens Proteobacteria Non neg R R R
Methylorubrum populi Proteobacteria Unlikely neg
Methylorubrum thiocyanatum Proteobacteria Unlikely neg
Methylorubrum zatmanii Proteobacteria Unlikely neg R S R R
Methyloversatilis discipulorum Proteobacteria Rare neg
Methyloversatilis universalis Proteobacteria Rare neg R(30KB) R(29KB) R(5KB)
Microbacterium aurum Actinobacteria Rare +
Microbacterium chocolatum Actinobacteria Unlikely +
Microbacterium deminutum Actinobacteria Unlikely +
Microbacterium esteraromaticum Actinobacteria Unlikely +
Microbacterium foliorum Actinobacteria Unlikely +
Microbacterium ginsengisoli Actinobacteria Non +
Microbacterium gubbeenense Actinobacteria Unlikely +
Microbacterium hydrocarbonoxydans Actinobacteria Unlikely +
Microbacterium kitamiense Actinobacteria Unlikely +
Microbacterium lacticum Actinobacteria Unlikely +
Microbacterium liquefaciens Actinobacteria Unlikely +
Microbacterium luteolum Actinobacteria Non +
Microbacterium maritypicum Actinobacteria Unlikely +
Microbacterium mitrae Actinobacteria Unlikely +
Microbacterium natoriense Actinobacteria Unlikely +
Microbacterium oleivorans Actinobacteria Unlikely +
Microbacterium oxydans Actinobacteria Unlikely +
Microbacterium paraoxydans Actinobacteria Rare + W(3-4)
Microbacterium phyllosphaerae Actinobacteria Unlikely +
Microbacterium saccharophilum Actinobacteria Unlikely +
Microbacterium schleiferi Actinobacteria Unlikely +
Microbacterium sediminicola Actinobacteria Unlikely +
Microbacterium testaceum Actinobacteria Non +
Microbispora rosea Actinobacteria Rare +
Micrococcus cohnii Actinobacteria Unlikely +
Micrococcus endophyticus Actinobacteria Unlikely +
Micrococcus luteus Actinobacteria Minor + S(1-)
Micrococcus lylae Actinobacteria Rare +
Micrococcus terreus Actinobacteria Rare +
Microlunatus phosphovorus Actinobacteria Unlikely +
Micromonospora aurantiaca Actinobacteria Rare +
Micropruina glycogenica Actinobacteria Rare +
Microvirga aerophila Proteobacteria Unlikely neg
Microvirga massiliensis Proteobacteria Rare neg S(4KB) R(300KB) R(30KB)
Microvirgula aerodenitrificans Proteobacteria Unlikely neg
Millionella massiliensis Bacteroidetes Rare neg
Miniphocaeibacter massiliensis Firmicutes Rare +
Mitsuokella jalaludinii Firmicutes Minor neg
Mitsuokella multacida Firmicutes Moderate neg S(10KB) S(10KB)
Mixta calida Proteobacteria Rare neg
Mixta intestinalis Proteobacteria Rare neg
Mobilibacterium massiliense Firmicutes Rare neg
Mobilibacterium timonense Firmicutes Rare neg
Mobilicoccus massiliensis Actinobacteria Rare + R R R S S
Mobiluncus curtisii Actinobacteria Rare vr S R
Moellerella wisconsensis Proteobacteria Rare neg S(30KB) R(250KB,vr) R(10KB)
Mogibacterium diversum Firmicutes Rare +
Mogibacterium neglectum Firmicutes Rare + S(0.5/2), W(0.125–4)
Mogibacterium pumilum Firmicutes Rare +
Mogibacterium timidum Firmicutes Rare + S(0.125/1), W(≤0.03-2) S(0.25/1), W(0.06-2) S(0.5/2), W(0.25-2) S(0.25/0.25), W(≤0.03-0.25) M(0.5/16), W(0.06->32)
Mogibacterium vescum Firmicutes Unlikely +
Monoglobus pectinilyticus Firmicutes Minor +
Moorella glycerini Firmicutes Unlikely + S
Moraxella catarrhalis Proteobacteria Unlikely neg M(≤8/≤8), W(≤8-?) S(0.25/0.5), W(<0.25->8) S(0.8/0.8), W(8–>8) M(2/>256), W(0.016->256) S(0.06/0.06), W(≤0.03-0.25)
Moraxella osloensis Proteobacteria Unlikely neg S(0.8/0.8), W(8–>8)
Mordavella massiliensis Firmicutes Rare neg
Morganella morganii Proteobacteria Minor neg S R(>200) R R R R
Moryella indoligenes Firmicutes Rare + S(4KB) R S(5KB) S(10KB) S
Mucispirillum schaedleri Deferribacteres Rare neg
Murdochiella asaccharolytica Firmicutes Rare + S(5KB) R(10KB)
Murdochiella massiliensis Firmicutes Rare + R S S R
Murdochiella vaginalis Firmicutes Rare + S S S S R
Muribaculum gordoncarteri Bacteroidetes Unlikely neg
Muribaculum intestinale Bacteroidetes Minor neg
Murimonas intestini Firmicutes Rare +
Mycobacterium abscessus Actinobacteria Unlikely vr R(10KB)
Mycobacterium avium Actinobacteria Unlikely vr R
Mycobacterium avium subsp. paratuberculosis Actinobacteria Unlikely vr
Mycobacterium colombiense Actinobacteria Rare vr
Mycobacterium florentinum Actinobacteria Rare vr
Mycobacterium fortuitum Actinobacteria Rare vr R(>256) W(1-2) R(32)
Mycobacterium gastri Actinobacteria Rare vr
Mycobacterium gordonae Actinobacteria Rare vr W(8-) W(2-)
Mycobacterium interjectum Actinobacteria Rare vr
Mycobacterium kansasii Actinobacteria Unlikely vr
Mycobacterium lentiflavum Actinobacteria Rare vr
Mycobacterium simiae Actinobacteria Rare vr
Mycobacterium terrae Actinobacteria Rare vr
Mycobacterium tuberculosis Actinobacteria Non vr M(2/8), W(0.5-64)
Mycobacterium tuberculosis variant africanum Actinobacteria Non vr
Mycobacterium tuberculosis variant bovis Actinobacteria Unlikely +
Mycobacteroides abscessus subsp. bolletii Actinobacteria Unlikely + R(>256) M(25KB) R(>256) R(>256) M(50KB)
Mycolicibacterium aubagnense Actinobacteria Non + R(256) S(<2) R(64) R(>256) M(>2)
Mycolicibacterium cosmeticum Actinobacteria Unlikely vr S(8)
Mycolicibacterium houstonense Actinobacteria Rare + S S R
Mycolicibacterium mageritense Actinobacteria Unlikely +
Mycolicibacterium neoaurum Actinobacteria Rare +
Mycoplasma hominis Tenericutes Rare neg S(8-) S(0.016/0.031), W(≤0.008-0.125)
Mycoplasma muris Tenericutes Rare neg
Mycoplasma pneumoniae Tenericutes Rare neg
Mycoplasmopsis arginini Tenericutes Unlikely neg
Mycoplasmopsis californica Tenericutes Unlikely neg
Myroides odoratimimus Bacteroidetes Unlikely neg
Myroides odoratus Bacteroidetes Unlikely neg
Nakamurella multipartita Actinobacteria Unlikely +
Nanosynbacter lyticus Candidatus Saccharibacteria Unlikely +
Natronorubrum bangense Euryarchaeota Non neg
Nautilia nitratireducens Proteobacteria Unlikely neg S(100KB)
Ndongobacter massiliensis Firmicutes Unlikely neg
Necropsobacter rosorum Proteobacteria Rare neg
Negativibacillus massiliensis Firmicutes Minor neg R(50KB) R(4KB) R(25KB) R(30KB) R(15KB)
Negativicoccus massiliensis Firmicutes Rare neg
Negativicoccus succinicivorans Firmicutes Rare neg S(50KB) R(5KB) R(10KB) S(1000KB)
Neglecta timonensis Firmicutes Rare +
Neisseria bacilliformis Proteobacteria Rare neg S(0.002-0.5)
Neisseria canis Proteobacteria Rare neg S
Neisseria cinerea Proteobacteria Minor neg R(128/>256), W(16->256) vr
Neisseria elongata Proteobacteria Minor neg S S(0.8/0.8), W(≤0.015–>8) R(128/>256), W(16->256) S
Neisseria flava Proteobacteria Rare neg
Neisseria flavescens Proteobacteria Minor neg
Neisseria gonorrhoeae Proteobacteria Non neg S(0.5-4) R(8-64) R
Neisseria lactamica Proteobacteria Rare neg S
Neisseria macacae Proteobacteria Rare neg
Neisseria meningitidis Proteobacteria Unlikely neg S(0.25/1), W(0.25-1) S
Neisseria mucosa Proteobacteria Rare neg S
Neisseria oralis Proteobacteria Rare neg
Neisseria perflava Proteobacteria Rare neg S
Neisseria polysaccharea Proteobacteria Rare neg
Neisseria shayeganii Proteobacteria Rare neg
Neisseria sicca Proteobacteria Rare neg S
Neisseria subflava Proteobacteria Rare neg S
Neoactinobaculum massilliense Actinobacteria Rare +
Neobacillus bataviensis Firmicutes Rare +
Neobacillus fumarioli Firmicutes Unlikely + S(50KB) S(50KB) S(100KB)
Neobacillus jeddahensis Firmicutes Rare + R R R
Neobacillus massiliamazoniensis Firmicutes Rare +
Neobacillus niacini Firmicutes Rare +
Neobacillus pocheonensis Firmicutes Unlikely +
Neobacillus soli Firmicutes Rare +
Neobittarella massiliensis Firmicutes Moderate +
Neofamilia massiliensis Firmicutes Rare
Nesterenkonia massiliensis Actinobacteria Rare + R R S
Nevskia ramosa Proteobacteria Unlikely neg
Niallia nealsonii Firmicutes Rare + R R
Niameybacter massiliensis Firmicutes Rare +
Nigerium massiliense Actinobacteria Rare +
Nitriliruptor alkaliphilus Actinobacteria Unlikely +
Nitrosomonas eutropha Proteobacteria Rare neg
Nocardia asteroides Actinobacteria Rare + R(50/-), W(12.5->400) R(1600) R(1600) R(200/-), W(3.1-200) R(25/-), W(0.8-200) R(400/-), W(100->400) R(400/-), W(100->400) R(100) S(5)
Nocardia brevicatena Actinobacteria Rare + R(50KB) R(100KB) R(50KB)
Nocardia cyriacigeorgica Actinobacteria Rare +
Nocardia mangyaensis Actinobacteria Unlikely + S S
Nocardia otitidiscaviarum Actinobacteria Rare + S R R S
Nocardioides jensenii Actinobacteria Unlikely +
Nocardioides kribbensis Actinobacteria Unlikely +
Nocardioides massiliensis Actinobacteria Unlikely + R S S
Nosocomiicoccus massiliensis Firmicutes Rare + R R S
Noviherbaspirillum massiliense Proteobacteria Rare neg S S
Novosphingobium capsulatum Proteobacteria Unlikely neg S R(5KB) S(25KB) M(300KB)
Numidum massiliense Firmicutes Rare + S R R S R R
Obesumbacterium proteus Proteobacteria Rare neg
Oceanidesulfovibrio marinus Proteobacteria Unlikely neg
Oceanithermus profundus Deinococcus-Thermus Unlikely neg
Oceanobacillus caeni Firmicutes Rare +
Oceanobacillus iheyensis Firmicutes Unlikely + S S
Oceanobacillus jeddahense Firmicutes Rare + R S R S
Oceanobacillus manasiensis Firmicutes Rare + S(20KB)
Oceanobacillus massiliensis Firmicutes Rare + R S R S
Oceanobacillus oncorhynchi Firmicutes Non +
Oceanobacillus picturae Firmicutes Unlikely +
Oceanobacillus senegalensis Firmicutes Unlikely +
Oceanobacillus sojae Firmicutes Rare +
Oceanobacillus timonensis Firmicutes Unlikely +
Ochrobactrum anthropi Proteobacteria Unlikely neg R R S S S
Ochrobactrum intermedium Proteobacteria Unlikely neg R R S R R
Odoribacter laneus Bacteroidetes Minor neg
Odoribacter massiliensis Bacteroidetes Minor
Odoribacter splanchnicus Bacteroidetes Widespread neg S(4/-), W(2–16) R S(0.25/-), W(0.06–0.5) S R R R R S R S(0.06/-), W(0.06->32) S R S
Oenococcus oeni Firmicutes Unlikely +
Oerskovia turbata Actinobacteria Rare +
Okadaella gastrococcus Firmicutes Rare neg R
Olegusella massiliensis Actinobacteria Rare + R S R S S S R
Oleidesulfovibrio alaskensis Proteobacteria Rare neg
Oleidesulfovibrio vietnamensis Proteobacteria Rare neg S(30KB) S(5KB)
Oligella urethralis Proteobacteria Rare neg
Olsenella congonensis Actinobacteria Rare +
Olsenella massiliensis Actinobacteria Rare +
Olsenella phocaeensis Actinobacteria Rare +
Olsenella profusa Actinobacteria Rare +
Olsenella timonensis Actinobacteria Rare +
Olsenella uli Actinobacteria Rare + R(32/>32), W(0.125->32) S(1/4), W(0.25-8) S(≤0.03/0.5), W(≤0.03->32) M(4/>32), W(0.25->32)
Olsenella urininfantis Actinobacteria Rare +
Oribacterium asaccharolyticum Firmicutes Rare vr S(50KB) R(10KB)
Oribacterium parvum Firmicutes Rare vr S S R S
Oribacterium sinus Firmicutes Minor vr S S(4KB) R S(5KB) S R(10KB)
Ornithinibacillus contaminans Firmicutes Unlikely +
Ornithinibacillus massiliensis Firmicutes Rare +
Ornithobacterium rhinotracheale Bacteroidetes Rare neg S R
Oscillibacter massiliensis Firmicutes Rare neg
Oscillibacter ruminantium Firmicutes Rare neg
Oscillibacter valericigenes Firmicutes Minor neg
Oscillospira guillermondii Firmicutes Rare +
Ottowia massiliensis Pseudomonadota Rare neg
Oxalobacter formigenes Proteobacteria Moderate neg S(5KB) S(25KB) S S
Pacaella massiliensis Synergistetes Rare neg
Paenarthrobacter aurescens Actinobacteria Rare +
Paenarthrobacter ilicis Actinobacteria Non +
Paenibacillus alvei Firmicutes Unlikely + S
Paenibacillus amylolyticus Firmicutes Rare +
Paenibacillus anaericanus Firmicutes Rare neg S(30KB) R(10KB) S(300U)
Paenibacillus antibioticophila Firmicutes Rare + R S S
Paenibacillus azoreducens Firmicutes Rare vr
Paenibacillus barcinonensis Firmicutes Unlikely +
Paenibacillus barengoltzii Firmicutes Unlikely +
Paenibacillus borealis Firmicutes Unlikely neg
Paenibacillus bouchesdurhonensis Firmicutes Rare neg R(4KB) S(25KB) S(30KB) S(15KB) S(50KB)
Paenibacillus chibensis Firmicutes Unlikely +
Paenibacillus chitinolyticus Firmicutes Rare vr
Paenibacillus cineris Firmicutes Rare vr S(50KB) S(50KB) S(100KB)
Paenibacillus cookii Firmicutes Unlikely vr S(50KB) S(50KB) S(100KB)
Paenibacillus daejeonensis Firmicutes Rare vr
Paenibacillus dendritiformis Firmicutes Rare neg
Paenibacillus donghaensis Firmicutes Unlikely +
Paenibacillus durus Firmicutes Rare +
Paenibacillus faecis Firmicutes Rare +
Paenibacillus favisporus Firmicutes Rare vr
Paenibacillus glucanolyticus Firmicutes Rare neg S(0.002/0.018) S(0.5)
Paenibacillus graminis Firmicutes Unlikely +
Paenibacillus ihuae Firmicutes Rare + S R S S S S
Paenibacillus ihumii Firmicutes Rare neg R S S S
Paenibacillus illinoisensis Firmicutes Rare +
Paenibacillus jamilae Firmicutes Rare vr
Paenibacillus kribbensis Firmicutes Rare vr
Paenibacillus lactis Firmicutes Rare neg
Paenibacillus larvae Firmicutes Rare +
Paenibacillus lautus Firmicutes Rare vr R(30KB) R(25KB) R(2KB)
Paenibacillus macerans Firmicutes Rare + S
Paenibacillus motobuensis Firmicutes Rare neg
Paenibacillus mucilaginosus Firmicutes Unlikely neg
Paenibacillus naphthalenovorans Firmicutes Unlikely +
Paenibacillus odorifer Firmicutes Unlikely +
Paenibacillus pabuli Firmicutes Rare +
Paenibacillus pasadenensis Firmicutes Rare +
Paenibacillus phocaensis Firmicutes Rare neg R R S R
Paenibacillus polymyxa Firmicutes Rare neg S
Paenibacillus provencensis Firmicutes Rare neg R S S S R S
Paenibacillus pueri Firmicutes Rare +
Paenibacillus rhizosphaerae Firmicutes Unlikely +
Paenibacillus riograndensis Firmicutes Unlikely vr
Paenibacillus rubinfantis Firmicutes Rare neg R(4KB) S(25KB) S(30KB) R(15KB) S(50KB)
Paenibacillus sabinae Firmicutes Rare +
Paenibacillus senegalensis Firmicutes Rare neg R S S
Paenibacillus senegalimassiliensis Firmicutes Rare vr R(4KB) S(25KB) S(30KB) S(15KB) R(50KB)
Paenibacillus stellifer Firmicutes Unlikely +
Paenibacillus thiaminolyticus Firmicutes Unlikely +
Paenibacillus timonensis Firmicutes Rare + R S
Paenibacillus tuaregi Firmicutes Rare vr R(4KB) S(25KB) S(30KB) S(15KB) R(50KB)
Paenibacillus typhae Firmicutes Rare + S(1)
Paenibacillus urinalis Firmicutes Rare neg
Paenibacillus xylanilyticus Firmicutes Rare +
Paeniclostridium ghonii Firmicutes Rare + S(50KB) R(100KB) S(100KB) R(100KB)
Paeniclostridium sordellii Firmicutes Minor + S(2/4), W(0.125–>32) S(1/1), W(≤0.125-1) S(0.03/0.06), W(≤0.008-0.06) S(≤0.06/0.5), W(≤0.06-4) S(0.5/1), W(0.25-1) M(2/16), W(0.016->64) R(8/16), W(2-16)
Paenisporosarcina quisquiliarum Firmicutes Unlikely +
Paludibacter jiangxiensis Bacteroidetes Rare neg
Paludibacter propionicigenes Bacteroidetes Unlikely neg
Paludibaculum fermentans Acidobacteria Unlikely neg S R S
Paludicola psychrotolerans Firmicutes Rare +
Pannonibacter phragmitetus Proteobacteria Unlikely neg
Pantoea agglomerans Proteobacteria Minor neg S(50) S(200) S(200) S(≤0.5/≤0.5), W(≤0.5-) S(0.008/0.015), W(0.008-0.06)
Pantoea conspicua Proteobacteria Rare neg
Pantoea eucalypti Proteobacteria Rare neg
Pantoea rodasii Proteobacteria Unlikely neg
Pantoea septica Proteobacteria Rare neg S(clinic)
Pantoea vagans Proteobacteria Rare neg
Papillibacter cinnamivorans Firmicutes Rare +
Parabacteroides bouchesdurhonensis Bacteroidetes Minor neg
Parabacteroides chinchillae Bacteroidetes Minor neg
Parabacteroides distasonis Bacteroidetes Widespread neg S(4/8), W(1-8) R S(1/2), W(0.5-4) S S(0.016/0.016), W(≤0.008-0.06) R R R R R R(64/128), W(16–128) R(64/128), W(32–256) M(2/4), W(0.5-16) S R(>32/>32), W(>32) R S
Parabacteroides faecis Bacteroidetes Rare neg
Parabacteroides goldsteinii Bacteroidetes Moderate neg S(1/1), W(0.125–4) R(≤32) M(4/>128), W(0.06–>128)
Parabacteroides gordonii Bacteroidetes Minor neg
Parabacteroides johnsonii Bacteroidetes Moderate neg
Parabacteroides massiliensis Bacteroidetes Rare neg S(1/2), W(0.25–2) M(1/>32), W(0.25–>32)
Parabacteroides merdae Bacteroidetes Widespread neg S(4/8), W(0.5–8) R S(1/2), W(0.5-4) R R R R R R R(128/128), W(32–128) M(0.032/>256), W(0.016->256) S S S
Parabacteroides pacaensis Bacteroidetes Rare neg
Parabacteroides pekinense Bacteroidetes Rare neg
Parabacteroides provencensis Bacteroidetes Rare neg
Parabacteroides timonensis Bacteroidetes Minor neg
Paraburkholderia fungorum Proteobacteria Rare neg
Paraburkholderia phytofirmans Proteobacteria Unlikely neg
Paracholeplasma brassicae Tenericutes Unlikely neg
Paraclostridium benzoelyticum Firmicutes Rare + S R S R
Paraclostridium bifermentans Firmicutes Moderate + S(2/4) S(0.5/2), W(0.02-2) S(0.03/0.06), W(≤0.008-0.06) S(0.125/0.5), W(≤0.015-1) S(≤0.06/0.5), W(≤0.06-4) S(0.5/2), W(0.25->32) M(2/16), W(0.06->32) M(2/4), W(0.5-8)
Paracoccus aminovorans Proteobacteria Rare neg
Paracoccus carotinifaciens Proteobacteria Unlikely neg
Paracoccus denitrificans Proteobacteria Rare neg S(50KB)
Paracoccus haeundaensis Proteobacteria Unlikely neg
Paracoccus marcusii Proteobacteria Non neg
Paracoccus marinus Proteobacteria Unlikely neg
Paracoccus sphaerophysae Proteobacteria Unlikely neg R(50KB)
Paracoccus yeei Proteobacteria Rare neg
Paraeggerthella hongkongensis Actinobacteria Rare + S(0.25-1) S(0.75-1.5)
Parafannyhessea umbonata Actinobacteria Unlikely +
Paraliobacillus quinghaiensis Firmicutes Non +
Paramuribaculum intestinale Bacteroidetes Rare neg
Paraprevotella clara Bacteroidetes Moderate neg
Paraprevotella xylaniphila Bacteroidetes Moderate neg
Pararheinheimera texasensis Proteobacteria Rare neg
Parascardovia denticolens Actinobacteria Rare +
Parasphingorhabdus flavimaris Proteobacteria Unlikely neg
Parasporobacterium paucivorans Firmicutes Rare neg
Parasutterella excrementihominis Proteobacteria Moderate neg
Parasutterella secunda Proteobacteria Rare neg
Paratractidigestivibacter faecalis Actinobacteria Rare +
Paremcibacter congregatus Proteobacteria Unlikely neg R
Parolsenella catena Actinobacteria Rare + S S S
Parolsenella massiliensis Actinobacteria Rare + S S S S
Parvibacter caecicola Actinobacteria Rare + S(0.069) S(0.59) S(<0.016) R(>256)
Parvimonas micra Firmicutes Moderate + S(3/6), W(0.75-6) S(0.125/0.25), W(0.06-0.25) S(≤0.008/0.016), W(≤0.008-0.03) S(0.03/0.125), W(0.015–0.25) S(0.125/0.125), W(≤0.006-0.25) S(0.5/1), W(0.125-1) S(0.023–0.38), W(≤0.03-0.25) S(0.5/1), W(0.125-1)
Pasteurella aerogenes Proteobacteria Rare neg
Pasteurella dagmatis Proteobacteria Rare neg S(0.06/0.06), W(0.03–0.125) M(4/8), W(4–8)
Pasteurella multocida Proteobacteria Rare neg S(0.06/0.125), W(0.015–0.125) R(16/16), W(4–>16)
Paucilactobacillus oligofermentans Firmicutes Non +
Paucilactobacillus suebicus Firmicutes Unlikely +
Paucilactobacillus vaccinostercus Firmicutes Unlikely +
Paucisalibacillus globulus Firmicutes Unlikely +
Pauljensenia bouchesdurhonensis Actinobacteria Minor +
Pauljensenia cellulosilytica Actinobacteria Rare +
Pauljensenia hongkongensis Actinobacteria Rare +
Pauljensenia keddieii Actinobacteria Minor +
Pauljensenia odontolyticus Actinobacteria Rare +
Pauljensenia turicensis Actinobacteria Rare +
Pectobacterium wasabiae Proteobacteria Unlikely neg
Pediococcus acidilactici Firmicutes Rare + S(4) M(16) R(512)
Pediococcus claussenii Firmicutes Rare
Pediococcus damnosus Firmicutes Unlikely + S
Pediococcus pentosaceus Firmicutes Minor + M(8) R(256) S(2) S(≤1)
Pedobacter cryoconitis Proteobacteria Non neg R(8) S(16)
Pedobacter daejeonensis Proteobacteria Unlikely neg
Pedobacter panaciterrae Bacteroidetes Unlikely neg
Pedobacter terricola Bacteroidetes Non neg S(100KB) S(15KB) S(5KB) M(100U)
Pedomicrobium ferrugineum Proteobacteria Rare neg S(100KB) S(100KB) R(100KB) R(100KB)
Pelistega indica Proteobacteria Rare neg
Pelobacter propionicus Proteobacteria Rare neg
Pelomonas aquatica Proteobacteria Rare neg
Pelomonas puraquae Proteobacteria Rare neg
Pelomonas saccharophila Proteobacteria Rare neg
Peptacetobacter hiranonis Firmicutes Minor +
Peptoclostridium acidaminophilum Firmicutes Unlikely +
Peptococcus niger Firmicutes Rare +
Peptoniphilus asaccharolyticus Firmicutes Minor + S(2/4), W(1–8) S(0.5/2), W(≤0.125-2) S(0.008/0.016), W(0.008-0.03) S(0.06/0.125), W(0.03–0.25) S(0.125/0.125), W(0.006-0.25) S(0.5/1), W(0.125-1.0) M(0.06/>16), W(0.06->16) S(≤0.03/≤0.03), W(≤0.03-0.25)
Peptoniphilus catoniae Firmicutes Rare +
Peptoniphilus colimassiliensis Firmicutes Rare +
Peptoniphilus duerdenii Firmicutes Rare + S(5KB) R(10KB)
Peptoniphilus gorbachii Firmicutes Rare + S(0.25-4) S(1) S(10KB)
Peptoniphilus grossensis Firmicutes Rare + S S R S
Peptoniphilus harei Firmicutes Minor + M(3/3), W(1.5-4) S(0.5/1), W(0.25–2) S(0.03/0.125), W(0.015–0.25) S(0.25/0.5), W(0.06–0.5) S(0.25/1.5), W(0.094-1.5) S(0.25/1), W(0.03–1)
Peptoniphilus indolicus Firmicutes Rare + S(0.25/1), W(0.03–2) S(0.25/0.5), W(0.06–1) R(32) S(0.125/0.5), W(0.03–1)
Peptoniphilus ivorii Firmicutes Rare + S(0.75–1.0) S(0.25/1), W(0.03–2) S(0.25/0.5), W(0.06–1) S(0.016–0.125) S(0.125/0.5), W(0.03–1)
Peptoniphilus koenoeneniae Firmicutes Rare + S(5KB) R(10KB)
Peptoniphilus lacrimalis Firmicutes Minor + S(0.75-3) S(0.25/1), W(0.03–2) S(0.25/0.5), W(0.06–1) S(0.016-0.38) S(0.125/0.5), W(0.03–1)
Peptoniphilus obesi Firmicutes Rare + S S R S
Peptoniphilus pacaensis Firmicutes Rare + S S
Peptoniphilus phoceensis Firmicutes Rare +
Peptoniphilus senegalensis Firmicutes Rare + S S S
Peptoniphilus timonensis Firmicutes Rare + S S S
Peptostreptococcus anaerobius Firmicutes Moderate + M(2/8), W(1-32) S(0.25/1), W(0.125-2) S(≤0.008/0.016), W(≤0.008-0.03) S(0.03/0.125), W(0.015–0.25) S(0.125/0.125), W(≤0.006-0.25) S(0.5/1), W(0.125-1) S(≤0.03/0.5), W(≤0.03->32) S(0.25/2), W(≤0.03-16)
Peptostreptococcus russellii Firmicutes Rare +
Peptostreptococcus stomatis Firmicutes Minor + S(0.25/1), W(0.06–1) S(0.25/0.5), W(0.125–0.5) S(0.06/0.25), W(0.06–0.5)
Peribacillus psychrosaccharolyticus Firmicutes Unlikely vr vr(8) S(8)
Peribacillus simplex Firmicutes Rare vr
Petrimonas mucosa Bacteroidetes Unlikely neg
Petrimonas sulfuriphila Bacteroidetes Rare neg
Petrobacter succinatimandens Proteobacteria Rare neg
Petrocella atlantisensis Firmicutes Unlikely +
Phascolarctobacterium faecium Firmicutes Minor neg R S
Phascolarctobacterium succinatutens Firmicutes Moderate neg
Phenylobacterium falsum Proteobacteria Unlikely neg S(30KB) S(50KB) S(300U)
Phenylobacterium haematophilum Proteobacteria Rare neg
Phenylobacterium lituiforme Proteobacteria Unlikely neg S S
Phocaeicola barnesiae Bacteroidetes Moderate neg
Phocaeicola coprocola Bacteroidetes Widespread neg S(0.25) R(>1024)
Phocaeicola coprophilus Bacteroidetes Widespread neg
Phocaeicola dorei Bacteroidetes Widespread neg S(2/2), W(0.5–2) R(24) M(2/>128), W(0.06–>128)
Phocaeicola massiliensis Bacteroidetes Minor neg R(5KB) R(10KB)
Phocaeicola paurosaccharolyticus Bacteroidetes Rare neg
Phocaeicola plebeius Bacteroidetes Widespread neg
Phocaeicola salanitronis Bacteroidetes Minor neg
Phocaeicola sartorii Bacteroidetes Moderate neg S(0.11) S(4.7) S(<0.016)
Phocaeicola vulgatus Bacteroidetes Widespread neg S(4/8), W(2-8) R(>1024) R S(1/2), W(0.25-4) S S(0.03/0.25), W(0.06-0.125) R R R(>1024) R R(>32) S(2) R(64/128), W(16–128) R(64/128), W(32–256) S(0.125/0.5), W(≤0.016->32) S R(>32/>32), W(>32) R(>1024) S
Phocea massiliensis Firmicutes Minor neg
Phoenicibacter congonensis Actinobacteria Rare + S(0.023) S(0.032) S(0.25) M(6) R(>256)
Phyllobacterium myrsinacearum Proteobacteria Rare neg S(30KB)
Pigmentiphaga kullae Proteobacteria Rare neg
Planococcus massiliensis Firmicutes Unlikely + S S S
Planococcus rifietoensis Firmicutes Unlikely + S(10KB) S(30KB) S(15KB) S(30KB) S(10KB)
Planomicrobium chinense Firmicutes Unlikely +
Planomicrobium koreense Firmicutes Unlikely +
Planomicrobium okeanokoites Firmicutes Unlikely +
Plesiomonas shigelloides Proteobacteria Rare neg R(5000) R(128) S M(4)
Pluralibacter gergoviae Proteobacteria Rare neg S(30KB,vr)) S(250KB) S(10KB)
Pontibacillus litoralis Firmicutes Rare + S(30KB) S(2KB) R(30KB) R(30KB)
Porphyromonas asaccharolytica Bacteroidetes Minor neg S(1/2), W(1–2) S(1/2), W(≤0.125-2) S(0.03/0.125), W(≤0.008-0.25) S(<1/<1), W(<1) S(2/4), W(<1–4) S(0.016/0.016), W(0.008-0.03) R(>32/>32), W(>32)
Porphyromonas bennonis Bacteroidetes Rare neg M R
Porphyromonas cangingivalis Bacteroidetes Unlikely neg S(0.03/0.125), W(≤0.015–0.25) S(4/8), W(2–>8) S(≤0.015/≤0.015), W(≤0.015)
Porphyromonas canoris Bacteroidetes Rare neg S(0.25/0.25), W(≤0.015–0.5) S(4/8), W(2–>8) S(≤0.015/≤0.015), W(≤0.015)
Porphyromonas crevioricanis Bacteroidetes Unlikely neg
Porphyromonas endodontalis Bacteroidetes Minor neg S(0.125/4), W(≤0.03-4) S(≤0.03/2), W(≤0.03-2)
Porphyromonas gingivalis Bacteroidetes Unlikely neg S(1/2), W(1–2) S(0.125/4), W(≤0.03-4) S(0.03/0.125), W(≤0.008-0.25) M(2/16), W(≤0.06->16) S(2/4), W(1–8) S(≤0.03/2), W(≤0.03-2) R(>32/>32), W(>32)
Porphyromonas levii Bacteroidetes Rare neg S(0.25/1), W(0.12-1) S(4/8), W(2–>8) M(0.125/>128), W(0.125->128) R(>32/>32), W(>32)
Porphyromonas macacae Bacteroidetes Rare neg S(0.06/0.125), W(≤0.015–0.125) S(8/0.8), W(2–>8) S(≤0.015/≤0.015), W(≤0.015–0.03)
Porphyromonas somerae Bacteroidetes Minor neg S(0.125/0.5), W(0.03–1) S(4/8), W(2–8) S(0.06/1), W(0.06–>128) R(>32/>32), W(>32)
Porphyromonas uenonis Bacteroidetes Minor neg S(0.125/0.5), W(0.03–1) S(2/2), W(0.5–4) S(0.06/1), W(0.06–>128)
Pragia fontium Proteobacteria Rare neg
Prevotella albensis Bacteroidetes Rare neg
Prevotella amnii Bacteroidetes Rare neg
Prevotella aurantiaca Bacteroidetes Rare neg
Prevotella baroniae Bacteroidetes Rare neg S(0.5/1), W(0.25–2) R(0.03/>32), W(0.03->32)
Prevotella bergensis Bacteroidetes Moderate neg S(1/2), W(0.06–4) R(0.03/>32), W(0.03->32)
Prevotella bivia Bacteroidetes Moderate neg S(2/4), W(1–8) S(2/2), W(0.5-4) S(0.25/0.5), W(0.125-0.5) S(2/2), W(1-4) R(128/>512), W(64->512) S(≤0.015/0.03), W(≤0.015->32) R(>32/>32), W(>32)
Prevotella brevis Bacteroidetes Minor neg S(0.5/2), W(0.25-2) S(0.06/2), W(0.06-4)
Prevotella bryantii Bacteroidetes Rare neg
Prevotella buccae Bacteroidetes Minor neg S(2/4), W(1-4) S(0.5/1), W(0.06-2) S(0.03/0.125), W(≤0.008-0.25) M(2/16), W(≤0.06->16) R(>16/>16), W(1->16) S(≤0.03/≤0.03), W(≤0.03->32)
Prevotella buccalis Bacteroidetes Minor neg S(0.25/1), W(0.125-1) R S(0.03/0.5), W(0.03-4) R
Prevotella conceptionensis Bacteroidetes Rare neg
Prevotella copri Bacteroidetes Widespread neg M(8) R(>1024) R S(1) S R R R(12) R R(>32) S(1) S(1) R(32) S(0.016) S S(12) S
Prevotella corporis Bacteroidetes Moderate neg S(2/4), W(1–8) S(1/2), W(≤0.125-2) S(0.03/0.125), W(≤0.008-0.25) M(2/16), W(≤0.06->16) R(>16/>16), W(1->16) S(≤0.016/0.016), W(≤0.016->32)
Prevotella dentalis Bacteroidetes Minor neg S(0.5/1), W(0.06-2) S(≤0.03/≤0.03), W(≤0.03->32)
Prevotella dentasini Bacteroidetes Rare neg
Prevotella denticola Bacteroidetes Minor neg S(12) S(0.25/1), W(≤0.03-2) R(>64/>64), W(>64) S(≤0.03/0.25), W(≤0.03->32)
Prevotella disiens Bacteroidetes Minor neg S(0.5/1), W(0.06-2) S(0.03/0.125), W(≤0.008-0.25) M(2/16), W(≤0.06->16) R(>16/>16), W(1->16) S(≤0.03/≤0.03), W(≤0.03->32) R(>32/>32), W(>32)
Prevotella enoeca Bacteroidetes Rare neg S(12) S(0.8/0.8), W(0.8) S(1.6)
Prevotella falsenii Bacteroidetes Rare
Prevotella fusca Bacteroidetes Unlikely neg R S
Prevotella herbatica Bacteroidetes Unlikely neg
Prevotella histicola Bacteroidetes Rare neg
Prevotella ihumii Bacteroidetes Rare neg
Prevotella intermedia Bacteroidetes Minor neg S(2/4), W(1-4) S(0.25/0.5), W(≤0.03-1) S(0.016/0.03), W(≤0.008-0.03) S(0.5/1), W(0.125-2) R(128/>512), W(64->512) S(≤0.03/≤0.03), W(≤0.03-≤0.03) R(>32/>32), W(>32)
Prevotella jejuni Bacteroidetes Rare neg R(5KB) S(10KB) S(1000KB)
Prevotella lascolaii Bacteroidetes Minor neg
Prevotella loescheii Bacteroidetes Rare neg S(12) S(0.25/1), W(≤0.03-2) S(0.03/0.125), W(≤0.008-0.25) M(2/16), W(≤0.06->16) R(>16/>16), W(1->16) S(≤0.03/0.25), W(≤0.03->32) R(>32/>32), W(>32)
Prevotella maculosa Bacteroidetes Rare neg R(5KB) R(10KB)
Prevotella marseillensis Bacteroidetes Rare neg
Prevotella marshii Bacteroidetes Rare neg
Prevotella melaninogenica Bacteroidetes Moderate neg S(2/4), W(1–8) S(0.25/1), W(≤0.03-2) S(0.06/0.125), W(0.03-0.125) S(2/4), W(14-4) R(128/>512), W(64->512) S(≤0.03/0.25), W(≤0.03->32) R(>32/>32), W(>32)
Prevotella merdae Bacteroidetes Rare neg
Prevotella micans Bacteroidetes Rare neg R(5KB) S(10KB)
Prevotella multiformis Bacteroidetes Rare neg
Prevotella multisaccharivorax Bacteroidetes Minor neg
Prevotella nanceiensis Bacteroidetes Rare neg S(1/2), W(0.06–4) R(5KB) R(0.03/>32), W(0.03->32) R(10KB) S(1000)
Prevotella nigrescens Bacteroidetes Minor neg S(0.25/0.5), W(≤0.03-1) R(128/>512), W(64->512) S(≤0.03/≤0.03), W(≤0.03-≤0.03) R(>32/>32), W(>32)
Prevotella oralis Bacteroidetes Minor neg S(2/4), W(1-4) S(0.5/1), W(0.06-2) S(≤0.03/≤0.03), W(≤0.03->32)
Prevotella oris Bacteroidetes Moderate neg S(2/4), W(1–8) S(1/2), W(≤0.125-2) S(0.03/0.125), W(≤0.008-0.25) M(2/16), W(≤0.06->16) R(>16/>16), W(1->16) S(≤0.016/0.016), W(≤0.016->32)
Prevotella oryzae Bacteroidetes Unlikely neg
Prevotella oulorum Bacteroidetes Rare neg
Prevotella pallens Bacteroidetes Rare neg S(0.25/0.5), W(≤0.03-1) R S(≤0.03/≤0.03), W(≤0.03-≤0.03) S
Prevotella paludivivens Bacteroidetes Rare neg
Prevotella phocaeensis Bacteroidetes Rare neg S(4KB) S(25KB) S(30KB) S(15KB) S(50KB)
Prevotella pleuritidis Bacteroidetes Rare neg
Prevotella rara Bacteroidetes Rare neg S S S
Prevotella rectalis Bacteroidetes Rare neg
Prevotella ruminicola Bacteroidetes Minor neg S(0.5/2), W(0.25-2) S(≤0.062/2), W(<0.062-4)
Prevotella saccharolytica Bacteroidetes Rare neg
Prevotella salivae Bacteroidetes Rare neg
Prevotella scopos Bacteroidetes Unlikely neg R R
Prevotella seregens Bacteroidetes Rare
Prevotella shahii Bacteroidetes Rare neg
Prevotella stercorea Bacteroidetes Moderate neg
Prevotella timonensis Bacteroidetes Minor neg S(0.125/0.5), W(0.03–1) S(30KB)
Prevotella veroralis Bacteroidetes Minor neg S(12) S(1.6)
Prevotellamassilia timonensis Bacteroidetes Minor neg
Priestia flexa Firmicutes Rare vr S(4) S(8)
Priestia koreensis Firmicutes Unlikely +
Priestia megaterium Firmicutes Rare + S(8) S R S(8)
Prochlorococcus marinus Cyanobacteria Rare neg
Prolixibacter bellariivorans Bacteroidetes Unlikely neg
Propionibacterium acidifaciens Actinobacteria Rare + S(5KB) R(10KB)
Propionibacterium freudenreichii Actinobacteria Rare + S(0.5/1), W(0.25–1)
Propionimicrobium lymphophilum Actinobacteria Rare neg S(0.5/1), W(0.25–1)
Prosthecobacter fluviatilis Verrucomicrobia Rare neg
Proteiniphilum saccharofermentans Bacteroidetes Unlikely neg
Proteus mirabilis Proteobacteria Moderate neg S R(>200) R S R(83) S(>0.5/>2), W(≤0.5->2) R(>32/>32), W(>32) R R
Proteus penneri Proteobacteria Rare neg R R vr(250) R(10KB) R
Proteus vulgaris Proteobacteria Rare neg vr R(>200) R R(2500) R(156) S(>0.5/>2), W(≤0.5->2) R(1000) R R
Provencibacterium massiliense Firmicutes Moderate neg
Providencia alcalifaciens Proteobacteria Minor neg R S
Providencia heimbachae Proteobacteria Rare neg W(8-16) R(32-64) S(1) S(0.06-0.12)
Providencia rettgeri Proteobacteria Minor neg R(>200) vr S S(>0.5/>2), W(≤0.5->2) R R
Providencia rustigianii Proteobacteria Rare neg S(30KB) R(10KB)
Providencia stuartii Proteobacteria Rare neg R S(>0.5/>2), W(≤0.5->2) R R
Pseudarthrobacter oxydans Actinobacteria Rare +
Pseudarthrobacter polychromogenes Actinobacteria Unlikely vr
Pseudescherichia vulneris Proteobacteria Rare neg S(30KB) S(300KB) S(25KB) R(2KB) S(300U)
Pseudobutyrivibrio ruminis Firmicutes Rare neg
Pseudobutyrivibrio xylanivorans Firmicutes Unlikely neg
Pseudochrobactrum asaccharolyticum Proteobacteria Rare neg
Pseudochrobactrum saccharolyticum Proteobacteria Rare neg
Pseudocitrobacter anthropi Proteobacteria Rare neg R(256) S R S
Pseudocitrobacter faecalis Proteobacteria Rare neg R R(256) S R S
Pseudoclavibacter alba Actinobacteria Rare +
Pseudoclavibacter helvolus Actinobacteria Unlikely +
Pseudoclavibacter sp. Timone Actinobacteria Rare + R R S(≤4) R
Pseudoclostridium thermosuccinogenes Firmicutes Unlikely neg
Pseudodesulfovibrio aespoeensis Proteobacteria Unlikely neg
Pseudodesulfovibrio indicus Proteobacteria Unlikely neg
Pseudoflavonifractor capillosus Firmicutes Moderate neg S(2/8), W(0.25–32) S(0.125/4), W(≤0.03-4) S(0.25-0.5) M(4-8) S(≤0.03/2), W(≤0.03-2)
Pseudoglutamicibacter albus Actinobacteria Rare + S
Pseudoglutamicibacter cumminsii Actinobacteria Unlikely + M(2/32), W(1–64) R(32/>256), W(16–>256) S(0.5/0.5), W(0.125–0.5) S(1/1), W(0.5–1) S(0.125/1), W(0.03–1) S(0.25/0.25), W(0.125–0.5)
Pseudomonas aeruginosa Proteobacteria Rare neg R(250) R(>200) R(>64/-) M(8/16), W(>32-) R(5000) M(>1) M(>4/>4), W(0.12->4) S(0.8-1.2) vr R(>32/>32), W(4–>32) R(>1000) M(2/4), W(1-16)
Pseudomonas alcaligenes Proteobacteria Non neg
Pseudomonas alcaliphila Proteobacteria Rare neg
Pseudomonas asiatica Proteobacteria Rare neg S(≤0.5-2)
Pseudomonas asplenii Proteobacteria Unlikely neg
Pseudomonas boreopolis Proteobacteria Non neg
Pseudomonas caricapapayae Proteobacteria Non neg
Pseudomonas chlororaphis Proteobacteria Non neg
Pseudomonas citronellolis Proteobacteria Rare neg
Pseudomonas fluorescens Proteobacteria Unlikely neg S S
Pseudomonas fragi Proteobacteria Rare neg
Pseudomonas fulva Proteobacteria Rare neg
Pseudomonas gessardii Proteobacteria Non neg
Pseudomonas japonica Proteobacteria Non neg
Pseudomonas libanensis Proteobacteria Non neg
Pseudomonas lundensis Proteobacteria Non neg
Pseudomonas luteola Proteobacteria Unlikely neg
Pseudomonas massiliensis Proteobacteria Non neg R R S
Pseudomonas mendocina Proteobacteria Rare neg
Pseudomonas migulae Proteobacteria Non neg
Pseudomonas monteilii Proteobacteria Unlikely neg
Pseudomonas mosselii Proteobacteria Non neg
Pseudomonas nitroreducens Proteobacteria Unlikely neg
Pseudomonas oleovorans Proteobacteria Unlikely neg
Pseudomonas oryzihabitans Proteobacteria Unlikely neg
Pseudomonas parafulva Proteobacteria Unlikely neg
Pseudomonas protegens Proteobacteria Unlikely neg
Pseudomonas putida Biovar A Proteobacteria Rare neg
Pseudomonas putida Biovar B Proteobacteria Rare neg
Pseudomonas rhodesiae Proteobacteria Non neg
Pseudomonas saudiphocaensis Proteobacteria Rare neg
Pseudomonas straminea Proteobacteria Unlikely neg
Pseudomonas stutzeri Proteobacteria Unlikely neg
Pseudomonas taetrolens Proteobacteria Non neg
Pseudomonas tolaasii Proteobacteria Unlikely neg
Pseudomonas veronii Proteobacteria Rare neg
Pseudomonas weihenstephanensis Proteobacteria Unlikely neg
Pseudomonas xanthomarina Proteobacteria Non neg S(15KB) S(300U)
Pseudomonas yamanorum Proteobacteria Unlikely neg R R R R R R
Pseudomonas zhaodongensis Proteobacteria Unlikely neg
Pseudonocardia dioxanivorans Actinobacteria Unlikely +
Pseudoprevotella muciniphila Bacteroidetes Rare neg
Pseudopropionibacterium massiliense Actinobacteria Rare +
Pseudoramibacter alactolyticus Firmicutes Rare + S(12) S(0.5/2), W(0.125–4) S(0.125/0.125), W(0.06–0.25) S(1/2), W(0.25-4) S(0.06/2), W(0.06–>128) S(0.5/0.5), W(0.06-8)
Pseudoruegeria marinistellae Proteobacteria Rare neg
Pseudoruminococcus massiliensis Firmicutes Rare neg
Pseudoxanthomonas broegbernensis Proteobacteria Unlikely neg R(30KB)
Pseudoxanthomonas japonensis Proteobacteria Unlikely neg S(0.02) S*<2) R(128)
Pseudoxanthomonas mexicana Proteobacteria Rare neg S(0.02) S(<2) I(16)
Pseudoxanthomonas spadix Proteobacteria Rare neg
Pseudoxanthomonas suwonensis Proteobacteria Rare neg
Pseudoxanthomonas taiwanensis Proteobacteria Rare neg
Psychrobacter alimentarius Proteobacteria Unlikely + S(100KB) M(5KB) S(300U)
Psychrobacter arenosus Proteobacteria Unlikely neg
Psychrobacter cibarius Proteobacteria Unlikely neg R(15KB) S(300U)
Psychrobacter faecalis Proteobacteria Unlikely neg
Psychrobacter fulvigenes Proteobacteria Rare neg
Psychrobacter maritimus Proteobacteria Unlikely neg
Psychrobacter namhaensis Proteobacteria Unlikely neg S(100KB) R(5KB) S(300U)
Psychrobacter phenylpyruvicus Proteobacteria Rare neg
Psychrobacter pulmonis Proteobacteria Unlikely neg
Pusillimonas faecalis Firmicutes Rare neg
Pygmaiobacter massiliensis Firmicutes Minor +
Pyramidobacter piscolens Synergistetes Minor neg S(5KB) R(2.5KB) S(2KB)
Rahnella aquatilis Proteobacteria Unlikely neg
Ralstonia mannitolilytica Proteobacteria Rare neg R(5KB) R(25KB) R(300KB)
Ralstonia pickettii Biovar Va-1&2 Proteobacteria Rare neg S(5KB) S(25KB) R(300KB)
Raoultella ornithinolytica Proteobacteria Minor neg S S S
Raoultella planticola Proteobacteria Rare neg S(30KB) S(300KB)
Raoultella terrigena Proteobacteria Rare neg
Raoultibacter massiliensis Actinobacteria Rare + S(0.023) R R
Raoultibacter timonensis Actinobacteria Rare + S(0.064) R R
Rheinheimera perlucida Proteobacteria Unlikely neg
Rhizobium metallidurans Proteobacteria Unlikely neg
Rhizorhabdus wittichii Proteobacteria Unlikely neg R R vr
Rhodanobacter ginsenosidimutans Proteobacteria Unlikely neg
Rhodococcus erythropolis Actinobacteria Rare +
Rhodococcus hoagii Actinobacteria Rare + S(1/1), W(≤0.03-4) S(0.25/0.25), W(0.12-0.25) S(0.25/0.5), W(0.12-0.5) R(16/16), W(0.25-16)
Rhodococcus jostii Actinobacteria Non +
Rhodococcus opacus Actinobacteria Unlikely +
Rhodococcus qingshengii Actinobacteria Unlikely +
Rhodococcus rhodochrous Actinobacteria Rare +
Rhodoplanes serenus Proteobacteria Unlikely neg
Rhodothermus marinus Bacteroidetes Non neg S S S R
Riemerella columbina Bacteroidetes Rare neg
Rikenella microfusus Bacteroidetes Rare neg R(10KB) R(300KB) R(10KB)
Risungbinella massiliensis Firmicutes Rare + R S S
Robertmurraya andreesenii Firmicutes Unlikely +
Robertmurraya kyonggiensis Firmicutes Rare +
Robertmurraya massiliosenegalensis Firmicutes Rare + R S S
Robinsoniella peoriensis Firmicutes Rare +
Romboutsia hominis Firmicutes Rare +
Romboutsia ilealis Firmicutes Rare vr S(<0.016) S(0.125)
Romboutsia lituseburensis Firmicutes Minor +
Romboutsia maritimum Firmicutes Rare +
Romboutsia timonensis Firmicutes Moderate +
Romboutsia weinsteinii Firmicutes Rare +
Roseburia faecis Firmicutes Widespread vr
Roseburia hominis Firmicutes Widespread vr S R S S R R R R R S S S S S
Roseburia intestinalis Firmicutes Widespread vr S(2) R(32) R S(0.5) S R R R(>1024) R R(>32) R(>32) S(0.094) S(0.25) S(<0.016) S S(6) S
Roseburia inulinivorans Firmicutes Widespread vr
Roseobacter denitrificans Proteobacteria Non neg S(100KB) S(100U)
Roseomonas gilardii Proteobacteria Rare neg R R R
Roseomonas mucosa Proteobacteria Rare neg W(0.13->32)
Rossellomorea aquimaris Firmicutes Unlikely vr
Rossellomorea marisflavi Firmicutes Rare vr
Rossellomorea vietnamensis Firmicutes Rare +
Rothia aeria Actinobacteria Minor +
Rothia dentocariosa Actinobacteria Minor + S(0.25/-), W(≤0.015–>8) M(2/>256), W(0.016->256)
Rothia halotolerans Actinobacteria Unlikely +
Rothia koreensis Actinobacteria Rare +
Rothia kristinae Actinobacteria Rare + S S vr S
Rothia mucilaginosa Actinobacteria Moderate + S M(2/>256), W(0.016->256) S S S
Rothia terrae Actinobacteria Rare + S(30KB) S(30KB)
Rubeoparvulum massiliense Firmicutes Rare neg R R R R
Rubinisphaera brasiliensis Planctomycetes Non neg
Rubneribacter badeniensis Actinobacteria Minor +
Rubrobacter xylanophilus Actinobacteria Non +
Rudanella lutea Bacteroidetes Unlikely neg
Ruminiclostridium cellobioparum Firmicutes Rare vr
Ruminiclostridium cellulolyticum Firmicutes Unlikely +
Ruminiclostridium herbifermentans Firmicutes Unlikely vr
Ruminiclostridium josui Firmicutes Rare +
Ruminococcus albus Firmicutes Moderate +
Ruminococcus bicirculans Firmicutes Moderate +
Ruminococcus bovis Firmicutes Unlikely +
Ruminococcus bromii Firmicutes Widespread + S R S S R R R R R S S S R S
Ruminococcus callidus Firmicutes Widespread +
Ruminococcus champanellensis Firmicutes Moderate +
Ruminococcus flavefaciens Firmicutes Moderate +
Ruminococcus gauvreauii Firmicutes Minor + S(<0.125) R(>256) R(>256) R(10KB)
Ruminococcus gnavus Firmicutes Widespread + S(3) R S(0.25/1), W(0.03–2) S R R R R S S(0.25/0.5), W(0.06–1) S(0.38) S S(0.125/0.5), W(0.03–1) R S
Ruminococcus lactaris Firmicutes Widespread +
Ruminococcus phoceensis Firmicutes Rare +
Ruminococcus torques Firmicutes Widespread + S R S R R R R R R S S S S S
Rummeliibacillus pycnus Firmicutes Unlikely + S
Rummeliibacillus stabekisii Firmicutes Rare +
Rummeliibacillus suwonensis Firmicutes Rare +
Ruoffia tabacinasalis Firmicutes Rare + S(2-8) M(0.12-8) S(0.12-1) S(0.06-2)
Ruthenibacterium lactatiformans Firmicutes Moderate neg S(30KB) R(2KB)
Saccharibacillus brassicae Firmicutes Unlikely + S S
Saccharofermentans acetigenes Firmicutes Non +
Salimicrobium jeotgali Firmicutes Non + R(15KB) R
Salinicoccus halodurans Firmicutes Unlikely + S(30KB) S(30KB) S(5KB)
Salinisphaera halophila Proteobacteria Non neg S(30KB) S(5KB)
Salinivibrio costicola Proteobacteria Rare neg
Salmonella bongori Proteobacteria Rare neg
Salmonella enterica Proteobacteria Unlikely neg
Salmonella enterica subsp. arizonae Proteobacteria Non neg
Salmonella enterica subsp. enterica serovar Choleraesuis Proteobacteria Unlikely neg
Salmonella enterica subsp. enterica serovar Enteritidis Proteobacteria Rare neg
Salmonella enterica subsp. enterica serovar Paratyphi A Proteobacteria Rare neg
Salmonella enterica subsp. enterica serovar Typhi Proteobacteria Rare neg
Salmonella enterica subsp. enterica serovar Typhimurium Proteobacteria Rare neg
Sanguibacter massiliensis Actinobacteria Rare +
Sarcina maxima Firmicutes Rare +
Sarcina ventriculi Firmicutes Minor + S S S
Scardovia inopinata Actinobacteria Rare +
Scardovia wiggsiae Actinobacteria Minor +
Schaalia cardiffensis Actinobacteria Rare + S R R
Schaalia hyovaginalis Actinobacteria Rare +
Schaalia meyeri Actinobacteria Rare + R(>32/>32), W(0.25->32) S(0.25/0.5), W(0.125–0.5) S(0.5/0.5), W(02.5-1) S(0.06/0.12), W(0.03–0.12) M(2/8), (0.5-16)
Schaalia odontolytica Actinobacteria Moderate + S(1/2), W(0.5–8) R(8/>32), W(≤0.03->32) S(1/1), W(0.5-1) M(0.125/>32), W(≤0.03->32) R(16/32), W(16->32)
Schaalia radingae Actinobacteria Rare + R(8/>32), W(≤0.03->32) M(0.125/>32), W(≤0.03->32)
Schaalia turicensis Actinobacteria Rare + R(8/>32), W(≤0.03->32) S(0.5/0.5), W(02.5-1) M(0.125/>32), W(≤0.03->32) M(2/8), (0.5-16)
Schleiferilactobacillus harbinensis Firmicutes Unlikely +
Schleiferilactobacillus perolens Firmicutes Unlikely +
Schleiferilactobacillus shenzhenensis Firmicutes Unlikely
Schlesneria paludicola Planctomycetes Unlikely neg R(30KB) R(10KB) R(30KB)
Schnuerera ultunensis Firmicutes Unlikely +
Sebaldella termitidis Fusobacteria Unlikely neg
Sediminibacillus massiliensis Firmicutes Rare +
Sediminispirochaeta smaragdinae Spirochaetes Unlikely neg
Selenomonas artemidis Firmicutes Rare neg S(12) S(1.6)
Selenomonas bovis Firmicutes Rare neg
Selenomonas flueggei Firmicutes Rare neg S(12) S(1.6)
Selenomonas infelix Firmicutes Rare neg S(12) S(1.6)
Selenomonas noxia Firmicutes Rare neg S(12) S(1.6)
Selenomonas ruminantium Firmicutes Minor neg
Selenomonas sputigena Firmicutes Rare neg
Selenomonas timonae Firmicutes Unlikely neg
Sellimonas intestinalis Firmicutes Minor +
Senegalia massiliensis Firmicutes Rare +
Senegalimassilia anaerobia Actinobacteria Minor +
Senegalimassilia faecalis Actinobacteria Rare +
Serratia ficaria Proteobacteria Rare neg S S S
Serratia fonticola Proteobacteria Rare neg
Serratia liquefaciens Proteobacteria Rare neg R(>32/>32), W(>32)
Serratia marcescens Proteobacteria Minor neg S(<2) R(>100) R S(200) R(90) S(0.5/1), W(≤0.5->2) R(>32/>32), W(>32) R R(>64/>128), W(≤1->128)
Serratia odorifera Proteobacteria Rare neg S(≥0.5/≥2), W(≤0.5->2)
Serratia quinivorans Proteobacteria Rare neg
Serratia ureilytica Proteobacteria Rare neg R(20KB)
Sharpea azabuensis Firmicutes Rare +
Shewanella algae Proteobacteria Unlikely neg
Shewanella carassii Proteobacteria Rare neg S S I
Shewanella decolorationis Proteobacteria Rare neg
Shewanella xiamenensis Proteobacteria Rare neg
Shigella boydii Proteobacteria Rare neg
Shigella dysenteriae Proteobacteria Unlikely neg S(<2)
Shigella flexneri Proteobacteria Minor neg M(4/128) R(2500) R(≥128/≥128) R(76)
Shigella sonnei Proteobacteria Minor neg M(4/8) R(2500) R(>128) S(>0.5/>2), W(≤0.5->2)
Shuttleworthia satelles Firmicutes Rare +
Silanimonas lenta Proteobacteria Non neg S(15KB) S(10KB)
Skermanella aerolata Proteobacteria Unlikely neg
Slackia equolifaciens Actinobacteria Rare +
Slackia exigua Actinobacteria Rare + S(0.5/2), W(0.125–4) S(0.5/1), W(0.25–4) S(0.06/2), W(0.06–>128) M(0.5/16), W(0.06–32)
Slackia faecicanis Actinobacteria Rare +
Slackia heliotrinireducens Actinobacteria Rare + S(1.5) S(0.5/2), W(0.06->32) S(0.25/1), W(0.06–1) S(0.06/2), W(0.06–16)
Slackia isoflavoniconvertens Actinobacteria Rare +
Slackia piriformis Actinobacteria Minor +
Sneathia sanguinegens Fusobacteria Rare neg
Sneathia vaginalis Fusobacteria Rare neg S(1.25) S(0.5) S(1.0) S(5)
Sodaliphilus pleomorphus Bacteroidetes Rare neg
Soleaferrea massiliensis Firmicutes Rare +
Solibacillus silvestris Firmicutes Unlikely +
Solibaculum mannosilyticum Firmicutes Rare vr
Solobacterium moorei Firmicutes Minor + S(0.5/2), W(0.125–4) S(0.5/1), W(0.25–4) S(0.06/2), W(0.06–>128) M(0.5/16), W(0.06–32)
Sorangium cellulosum Proteobacteria Rare neg
Sphaerotilus natans Proteobacteria Unlikely neg
Sphingobacterium alimentarium Bacteroidetes Unlikely neg
Sphingobacterium faecium Bacteroidetes Rare neg
Sphingobacterium mizutaii Bacteroidetes Unlikely neg M(30KB) M(25KB) M(25KB) M(2KB) R(10KB) R(300KB)
Sphingobacterium multivorum Bacteroidetes Rare neg S(30KB,vr) S(25KB,vr) S(25KB,vr) vr(2KB) R(300KB)
Sphingobacterium nematocida Bacteroidetes Unlikely neg
Sphingobacterium siyangense Bacteroidetes Rare neg S R
Sphingobacterium spiritivorum Bacteroidetes Rare neg
Sphingobacterium thalpophilum Bacteroidetes Unlikely neg R(>8)
Sphingobium xenophagum Proteobacteria Unlikely neg
Sphingomonas adhaesiva Proteobacteria Unlikely neg S R(5KB) R(25KB) R(300KB)
Sphingomonas aerolata Proteobacteria Non neg
Sphingomonas aestuarii Proteobacteria Unlikely neg
Sphingomonas azotifigens Proteobacteria Rare neg
Sphingomonas bisphenolicum Proteobacteria Unlikely neg
Sphingomonas echinoides Proteobacteria Unlikely neg
Sphingomonas glacialis Proteobacteria Unlikely neg S(30KB)
Sphingomonas hankookensis Proteobacteria Rare neg S(100KB) R(15KB) S(5KB) M(100U)
Sphingomonas koreensis Proteobacteria Unlikely neg
Sphingomonas melonis Proteobacteria Rare neg
Sphingomonas panni Proteobacteria Rare neg
Sphingomonas paucimobilis Proteobacteria Rare neg S S R(5KB) S(25KB) R
Sphingomonas pseudosanguinis Proteobacteria Rare neg
Sphingomonas sinipercae Proteobacteria Unlikely neg
Sphingomonas yabuuchiae Proteobacteria Rare neg
Sphingopyxis bauzanensis Proteobacteria Unlikely neg S(100KB) S(100KB)
Spiribacter roseus Proteobacteria Non neg
Spirochaeta coccoides Spirochaetes Rare neg
Spirochaeta thermophila Spirochaetes Non neg S S
Spirosoma linguale Bacteroidetes Unlikely neg
Sporobacter termitidis Firmicutes Rare +
Sporolactobacillus laevolacticus Firmicutes Unlikely +
Sporolactobacillus nakayamae subsp. racemicus Firmicutes Rare +
Sporomusa termitida Firmicutes Unlikely neg
Sporosarcina aquimarina Firmicutes Non +
Sporosarcina koreensis Firmicutes Unlikely +
Sporosarcina luteola Firmicutes Rare vr
Sporosarcina siberiensis Firmicutes Unlikely +
Stackebrandtia nassauensis Actinobacteria Unlikely +
Staphylococcus arlettae Firmicutes Rare + R S R R(8)
Staphylococcus aureus subsp. aureus Firmicutes Minor + R(16/16), W(≤0.12->16) R(256/>1024), W(128->1024) S(2) S(2/2), W(0.25-4) S(≤0.25/≤0.25), W(≤0.25->4) S(≤0.25/≤0.25), W(≤0.25->4) S(0.5/2), W(≤0.12->16) S(1/1), W(0.25-4) M(2/>256), W(0.016->256) S(0.25/0.5), W(≤0.015-1) R(32) S(0.25/0.25), W(0.12->32)
Staphylococcus auricularis Firmicutes Rare + R(12.5/100), W(0.05->200) S(≤0.5/1) S(>1/>2), W(≤0.5->2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) S
Staphylococcus capitis subsp. capitis Firmicutes Rare + R(12.5/100), W(0.05->200) S(≤0.5/1) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) S(0.05-0.1)
Staphylococcus caprae Firmicutes Rare + S(≤0.5/1) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) S(0.1)
Staphylococcus carnosus Firmicutes Rare + S
Staphylococcus cohnii subsp. cohnii Firmicutes Rare + S S(0.125/0.25), W(0.06–0.25) S(0.125/0.25), W(0.016–2) S(1/1), W(0.5–1) S(0.125/1), W(0.06–8) M(≥1.6) S(0.5/1), W(0.25–1) R(3.1-12.5)
Staphylococcus condimenti Firmicutes Rare + S
Staphylococcus devriesei Firmicutes Rare +
Staphylococcus epidermidis Firmicutes Widespread + vr R(256/>1024), W(128->1024) S S(0.125/0.25), W(0.06–8) S(>1/>1), W(≤0.5->1) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(2/>256), W(0.016->256) S(1/2), W(0.06-4) S S(0.25/0.25), W(0.12->16)
Staphylococcus equorum subsp. equorum Firmicutes Rare + R S(0.06/0.5), W(0.015-4) S(vr) R(16)
Staphylococcus gallinarum Firmicutes Rare + S(4-16) S(4-32) M(2->128) R(4-32)
Staphylococcus haemolyticus Firmicutes Minor + R(12.5/100), W(0.05->200) S S S(>1/>1), W(≤0.5->1) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.03-1) S
Staphylococcus hominis subsp. hominis Firmicutes Minor + R(12.5/100), W(0.05->200) S S(≤0.5/1) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) S(0.1-0.2)
Staphylococcus hyicus Firmicutes Rare + S(25-50) S(0.8-1.6) S(0.5/1), W(0.125–1) S(0.05-0.1)
Staphylococcus intermedius Firmicutes Rare + S(0.5/1), W(0.25-2) S W(2.93-7.5)
Staphylococcus kloosii Firmicutes Rare + S(2-32) S(0.4-0.4) R(16-64)
Staphylococcus lugdunensis Firmicutes Rare + S(2-4) M(2-16) S(5-10) M(2-4) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) S(0.125/1), W(0.06–8) S(0.25/0.5), W(0.06-2) S(0.12) R
Staphylococcus nepalensis Firmicutes Rare + S S R S S S S S R S S S R
Staphylococcus pasteuri Firmicutes Minor + S(30,vr) S(50KB) S(300KB) S(5KB) S(30KB) vr(15KB) S(5KB) S(10KB) R(500KB)
Staphylococcus petrasii Firmicutes Rare + S(5)
Staphylococcus pettenkoferi Firmicutes Rare + R vr S vr S R S
Staphylococcus pseudintermedius Firmicutes Rare + S(0.125/0.25), W(0.06–0.25) S
Staphylococcus saccharolyticus Firmicutes Rare + S
Staphylococcus saprophyticus subsp. saprophyticus Firmicutes Rare + S vr S(>1/>2), W(≤0.5->2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) R(5) M(4/8), W(0.25-8)
Staphylococcus schleiferi subsp. schleiferi Firmicutes Rare + S(2) S(0.12-2) S(2.5-5) M(1-4) S(0.125/0.25), W(0.016–2) S(1/1), W(0.5–1) S(0.125/1), W(0.06–8) S(0.5/1), W(0.25–1) S(0.12) R
Staphylococcus simiae Firmicutes Rare + S S R
Staphylococcus simulans Firmicutes Rare + S(≤0.5/1) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) S(0.1-0.2)
Staphylococcus succinus subsp. succinus Firmicutes Unlikely + S S S S S S R
Staphylococcus warneri Firmicutes Minor + R(12.5/100), W(0.05->200) S(vr) S(0.125/0.25), W(0.06–0.25) S(>1/>2), W(≤0.5->2) S(0.125/0.25), W(0.016–2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(>0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) S(0.025-1)
Staphylococcus xylosus Firmicutes Rare + S(≤0.5/1) S(≤1/>2), W(≤0.5->2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) M(≤0.12/>8), W(≤0.06->8) S(0.25/0.5), W(0.06-2) R(vr)
Starkeya novella Proteobacteria Unlikely neg
Stenotrophomonas acidaminiphila Proteobacteria Unlikely neg S(25KB) S(300U)
Stenotrophomonas bentonitica Proteobacteria Unlikely neg
Stenotrophomonas maltophilia Proteobacteria Minor neg R(16/32), W(4-32) R R(200KB) R R(100) S(0.125/0.5), W(≤0.06-4) R(>32/>32), W(4–>32) R(30KB) R(10KB) M(1/4), W(0.25->8)
Stenotrophomonas rhizophila Proteobacteria Rare neg S S R(vr)
Stomatobaculum longum Firmicutes Minor vr S(50KB) R(25KB) S(5KB) S(10KB)
Streptobacillus hongkongensis Fusobacteria Rare neg S(4) S(2-4) R(>32) S(0.75)
Streptobacillus moniliformis Fusobacteria Unlikely neg S(1) R(>8/256) S(0.25)
Streptococcus acidominimus Firmicutes Unlikely +
Streptococcus agalactiae Firmicutes Minor + R(>512/>512), W(128->512) S(≤0.5/≤0.5) S(-/0.015), W(0.008-0.06) S(0.03/0.06), W(≤0.008-0.06) S(0.3/0.5), W(0.25-0.5) M(>0.06/>16), W(0.03->16) S(0.1-0.2) S(0.25/0.25), W(0.12-0.25) R(16/16), W(16-32)
Streptococcus alactolyticus Firmicutes Rare + S(0.06/0.125), W(0.016–0.125) S(0.25/0.25), W(0.125–0.5) S(0.125/0.25), W(0.06–8) S(0.06/0.06), W(0.06–0.25)
Streptococcus anginosus Firmicutes Widespread + R(>512/>512), W(128->512) S(≤0.5/≤0.5) S(0.5/1), W(0.25-2) S(≤0.12/≤0.12), W(≤0.12->16)
Streptococcus anginosus subsp. whileyi Firmicutes Rare +
Streptococcus australis Firmicutes Minor +
Streptococcus caballi Firmicutes Rare +
Streptococcus canis Firmicutes Unlikely + S(≤0.5/≤0.5) S(0.06/0.125), W(0.016–0.125) S(0.25/0.25), W(0.125–0.5) S(0.125/0.25), W(0.06–8) S(0.06/0.06), W(0.06–0.25)
Streptococcus castoreus Firmicutes Rare +
Streptococcus constellatus subsp. constellatus Firmicutes Minor + S(0.5/0.32), W(0.25–>32) S(0.5/1), W(0.25-2) S(≤0.12/≤0.12), W(≤0.12->16)
Streptococcus cristatus Firmicutes Minor +
Streptococcus danieliae Firmicutes Rare + R(>256) S(1.1) S(<0.016) S(8)
Streptococcus didelphis Firmicutes Rare + R(4) S(0.5)
Streptococcus downei Firmicutes Rare +
Streptococcus dysgalactiae Firmicutes Rare + S(0.25/0.5), W(0.125–0.5) S(≤0.06/≤0.06), W(≤0.06->8)
Streptococcus dysgalactiae subsp. equisimilis Firmicutes Unlikely + S(≤0.5/≤0.5) S(0.06/0.125), W(0.016–0.125) S(0.25/0.25), W(0.125–0.5) S(0.125/0.25), W(0.06–8) S(0.06/0.06), W(0.06–0.25)
Streptococcus equi subsp. equi Firmicutes Rare + M(2.38/2.38) S(0.12/0.12) S R(8/8)
Streptococcus equinus Firmicutes Moderate + S(0.25-8) W(0.5-16) S(0.5/1), W(≤0.25->2) W(≤0.125-≥256) S(≤0.125-1)
Streptococcus ferus Firmicutes Rare +
Streptococcus gallolyticus subsp. gallolyticus Firmicutes Minor + S(0.5/0.5), W(0.25-0.5)
Streptococcus gordonii Firmicutes Minor + S(≤0.5/≤0.5)
Streptococcus gwangjuense Firmicutes Unlikely +
Streptococcus henryi Firmicutes Rare +
Streptococcus hyovaginalis Firmicutes Rare +
Streptococcus ilei Firmicutes Unlikely +
Streptococcus infantarius Firmicutes Minor + S(0.25-8) W(0.5-16) S(≤0.5/≤0.5) W(≤0.125-≥256) S(≤0.125) S(≤0.125-1)
Streptococcus infantarius subsp. infantarius Firmicutes Minor +
Streptococcus infantis Firmicutes Minor +
Streptococcus intermedius Firmicutes Moderate + S(0.5/0.32), W(0.25–>32) S(0.06/1), W(0.015–2) S(>1/>2), W(≤0.5->2) M(2/8), W(≤2->16) S(1/2), W(0.25-4) S(0.125/0.5), W(0.125–>16) S(0.25/0.5), W(0.06-2)
Streptococcus koreensis Firmicutes Unlikely +
Streptococcus lactarius Firmicutes Rare +
Streptococcus lutetiensis Firmicutes Minor +
Streptococcus macedonicus Firmicutes Rare +
Streptococcus merionis Firmicutes Rare +
Streptococcus mitis Firmicutes Moderate + S(1/8), W(0.25–>8) S(0.25/0.5), W(0.25–0.5) M(0.25/>256), W(0.064->256)
Streptococcus mutans Firmicutes Moderate + S(0.5/1), W(0.25-2)
Streptococcus oralis Firmicutes Minor + S(0.5/1), W(0.25-2) M(0.25/>256), W(0.064->256)
Streptococcus oralis subsp. tigurinus Firmicutes Rare +
Streptococcus orisratti Firmicutes Rare +
Streptococcus ovis Firmicutes Rare +
Streptococcus pantholopis Firmicutes Rare +
Streptococcus parasanguinis Firmicutes Widespread + S R R S R R R R R S M(0.125/256), W(0.064->256) S R S
Streptococcus parasuis Firmicutes Rare +
Streptococcus parauberis Firmicutes Rare +
Streptococcus pasteurianus Firmicutes Minor +
Streptococcus periodonticum Firmicutes Unlikely +
Streptococcus peroris Firmicutes Rare +
Streptococcus pluranimalium Firmicutes Unlikely +
Streptococcus plurextorum Firmicutes Rare +
Streptococcus pneumoniae Firmicutes Minor + R(>512/>512), W(128->512) S(1/1), W(0.5–2) S(0.06/0.25), W(0.06–>32)
Streptococcus porci Firmicutes Rare +
Streptococcus pseudopneumoniae Firmicutes Minor + S(≤2/≤2), W(≤2-4) M(≤0.12/≥38), W(≤0.12-≥38); R(39%) S M(≤0.12/≥0.5), W(≤0.12-≥128); R(21%)
Streptococcus pseudoporcinus Firmicutes Rare + S(30KB)
Streptococcus pyogenes Firmicutes Minor + S(<2) R(>512/>512), W(128->512) S(≤0.5/≤0.5) S(0.06/0.125), W(0.016–0.125) S(0.06/0.12), W(0.03-0.25) S(0.25/0.5), W(0.25-0.5) S(0.06/2), W(0.016->64) S(0.04-0.8) S(0.03/0.06), W(0.03-0.5) R(19) R(16/16), W(8-16)
Streptococcus rubneri Firmicutes Rare +
Streptococcus salivarius Firmicutes Widespread + S R R R R R R R R S(≤0.5/≤0.5) S M(0.125/256), W(0.064->256) S R S
Streptococcus sanguinis Firmicutes Moderate + S(0.03/0.06), W(0.008–0.06) M(0.125/256), W(0.064->256)
Streptococcus sinensis Firmicutes Rare + R R
Streptococcus sobrinus Firmicutes Minor +
Streptococcus suis Firmicutes Rare + R(310/310), W(78-620)
Streptococcus thermophilus Firmicutes Widespread +
Streptococcus thoraltensis Firmicutes Rare + M(0.125/256), W(0.064->256)
Streptococcus timonensis Firmicutes Minor + R(25KB) S(30KB)
Streptococcus uberis Firmicutes Rare + S(0.5/1), W(0.25-2)
Streptococcus vestibularis Firmicutes Moderate +
Streptococcus viridans Firmicutes Rare + S(>0.25/>2), W(≤0.25->2) M(3.12/3.12), W(0.78-3.12) M(0.12/8), W(≤0.12->16) S(0.02-1)
Streptomyces albus Actinobacteria Unlikely + R(>256) S(5) S(0.5)
Streptomyces flavogriseus Actinobacteria Unlikely +
Streptomyces hygroscopicus Actinobacteria Unlikely +
Streptomyces koyangensis Actinobacteria Rare +
Streptomyces lividans Actinobacteria Unlikely +
Streptomyces massiliensis Actinobacteria Unlikely +
Streptomyces misionensis Actinobacteria Rare +
Streptomyces specialis Actinobacteria Unlikely +
Streptomyces thermoviolaceus Actinobacteria Rare + S(16) S(32) S(4) S(32)
Streptomyces thermovulgaris Actinobacteria Unlikely +
Streptomyces violaceusniger Actinobacteria Unlikely +
Streptosporangium roseum Actinobacteria Unlikely + R(5) R(25) S(50) R(5)
Subdoligranulum formicile Firmicutes Rare neg
Subdoligranulum variabile Firmicutes Moderate neg
Succinatimonas hippei Proteobacteria Minor neg
Succinivibrio dextrinosolvens Proteobacteria Rare neg
Sulfurospirillum deleyianum Proteobacteria Rare neg
Sutcliffiella cohnii Firmicutes Unlikely +
Sutterella faecalis Proteobacteria Rare neg
Sutterella massiliensis Proteobacteria Rare neg
Sutterella megalosphaeroides Proteobacteria Rare neg S(30KB) R(25KB) R(30KB) S(10KB)
Sutterella parvirubra Proteobacteria Minor neg
Sutterella seckii Proteobacteria Rare neg
Sutterella stercoricanis Proteobacteria Rare neg
Sutterella timonensis Proteobacteria Rare neg
Sutterella wadsworthensis Proteobacteria Widespread neg S(2/8), W(0.25–32) S(0.25/4), W(0.25->128) R(512/1024), W(0.5->1024) M(0.25/>32), W(0.06->32) R(>32/>32), W(>32)
Symbiobacterium thermophilum Firmicutes Unlikely neg
Symbiobacterium toebii Firmicutes Unlikely neg S(2)
Syntrophobotulus glycolicus Firmicutes Unlikely neg
Syntrophococcus sucromutans Firmicutes Rare neg
Syntrophomonas zehnderi Firmicutes Rare vr
Tannerella forsythia Bacteroidetes Minor neg
Tannerella serpentiformis Bacteroidetes Unlikely neg M(10KB) S(5KB)
Taonella mepensis Proteobacteria Unlikely neg R(30KB) R(30KB)
Tatumella ptyseos Proteobacteria Rare neg S(0.5-2) vr vr S
Tepidanaerobacter acetatoxydans Firmicutes Rare vr
Tepiditoga spiralis Thermotogae Unlikely neg
Terrahaemophilus aromaticivorans Proteobacteria Rare neg
Terribacillus aidingensis Firmicutes Rare +
Terribacillus halophilus Firmicutes Unlikely +
Terrisporobacter glycolicus Firmicutes Minor + S(0.5/2), W(0.02-2) S(0.125/0.5), W(≤0.015-1) S(0.25/1), W(0.06–8) S(0.5/2), W(0.25->32) S(0.06/4), W(0.02-8) M(1/8), W(0.06-16)
Terrisporobacter mayombei Firmicutes Rare + S(0.5) S(0.125)
Terrisporobacter othiniensis Firmicutes Rare +
Terrisporobacter petrolearius Firmicutes Rare +
Tessaracoccus massiliensis Actinobacteria Rare + R(4KB) S S(25KB) S(30KB)
Tetragenococcus halophilus Firmicutes Unlikely + S
Tetragenococcus koreensis Firmicutes Rare +
Tetragenococcus solitarius Firmicutes Rare +
Thalassobacillus devorans Firmicutes Non +
Thauera terpenica Proteobacteria Rare neg
Thermaerobacter marianensis Firmicutes Non vr
Thermoanaerobacterium thermosaccharolyticum Firmicutes Rare neg
Thermobacillus composti Firmicutes Unlikely neg
Thermobispora bispora Actinobacteria Unlikely +
Thermoclostridium stercorarium Firmicutes Unlikely neg
Thermolithobacter ferrireducens Firmicutes Non + R(10KB)
Thermomonas carbonis Proteobacteria Unlikely neg
Thermomonospora curvata Actinobacteria Unlikely +
Thermophilibacter immobilis Actinobacteria Unlikely +
Thermophilibacter mediterraneus Actinobacteria Rare +
Thermophilibacter provencensis Actinobacteria Minor +
Thermus scotoductus Deinococcus-Thermus Unlikely neg S(30KB) S(70KB) S(19KB) R(300U)
Thiomonas islandica Proteobacteria Unlikely neg
Thomasclavelia saccharogumia Firmicutes Rare + R(15) S(0.5)
Thomasclavelia spiroformis Firmicutes Moderate + R(256/256), W(256-) R(256/256), W(2-256)
Tidjanibacter inops Bacteroidetes Moderate
Tidjanibacter massiliensis Bacteroidetes Rare neg
Timonella senegalensis Actinobacteria Rare + R R
Tissierella praeacuta Firmicutes Rare + S(2/8), W(0.25–32) S(0.5/1), W(0.25–8) S(1/2), W(0.25–32) M(4/8), W(0.125–>32)
Trabulsiella guamensis Proteobacteria Rare neg S(30KB) vr(250KB) S(25KB) S(10KB)
Tractidigestivibacter scatoligenes Actinobacteria Rare +
Traorella massiliensis Firmicutes Rare neg S S R R S R
Treponema berlinense Spirochaetes Rare neg
Treponema brennaborense Spirochaetes Unlikely neg
Treponema denticola Spirochaetes Rare neg S
Treponema medium Spirochaetes Unlikely neg
Treponema parvum Spirochaetes Unlikely neg
Treponema pectinovorum Spirochaetes Rare neg
Treponema pedis Spirochaetes Unlikely neg
Treponema peruense Spirochaetes Rare neg
Treponema phagedenis Spirochaetes Unlikely neg
Treponema primitia Spirochaetes Unlikely neg
Treponema ruminis Spirochaetes Unlikely neg
Treponema socranskii Spirochaetes Unlikely neg
Treponema succinifaciens Spirochaetes Rare neg S(4KB) R(4KB) R(40U)
Treponema vincentii Spirochaetes Rare neg
Tropheryma whipplei Actinobacteria Unlikely neg
Trueperella bernardiae Actinobacteria Rare +
Trueperella pyogenes Actinobacteria Rare + R R(32/>128), W(0.03->128) S(0.25/0.5), W(0.125–0.5) S(clinic), S(0.5/1), W(0.5–1) S(0.06/0.25), W(0.03–0.5)
Tsukamurella pulmonis Actinobacteria Unlikely + R
Tumebacillus avium Firmicutes Unlikely +
Tumebacillus permanentifrigoris Firmicutes Unlikely + S(30KB)
Turicibacter sanguinis Firmicutes Moderate + S R
Turicimonas muris Proteobacteria Rare neg
Tyzzerella nexilis Firmicutes Widespread + S(1/2), W(0.25–32)
Ureaplasma parvum Tenericutes Rare unk
Ureaplasma urealyticum Tenericutes Rare unk
Ureibacillus massiliensis Firmicutes Rare neg S R S S
Ureibacillus suwonensis Firmicutes Unlikely neg
Ureibacillus thermosphaericus Firmicutes Non neg
Urinicoccus timonensis Firmicutes Rare +
Urmitella timonensis Firmicutes Rare +
Uruburuella suis Proteobacteria Rare neg
Vaginimicrobium propionicum Actinobacteria Unlikely + S
Vagococcus carniphilus Firmicutes Rare + S
Vagococcus fluvialis Firmicutes Rare +
Vagococcus lutrae Firmicutes Rare +
Vagococcus penaei Firmicutes Rare +
Vagococcus teuberi Firmicutes Rare + R(256) R R
Vampirovibrio chlorellavorus Cyanobacteria Unlikely neg
Varibaculum cambriense Actinobacteria Rare + S(1/2), W(0.25–>32) S S(0.06/2), W(0.06–>128)
Varibaculum timonense Actinobacteria Rare +
Variovorax boronicumulans Proteobacteria Rare neg
Variovorax ginsengisoli Proteobacteria Unlikely neg S(100KB) R(15KB) R(5KB)
Variovorax paradoxus Proteobacteria Unlikely neg S(30KB) R(30KB) S(300U)
Veillonella atypica Firmicutes Widespread neg S(2/8), W(0.25–32) S(2/4), W(0.125-4) R(8-256) R(>256/>256), W(64–>256) R(>64/>64), W(64–>64) S(0.06/0.125), W(≤0.03->32) R(>32/>32), W(>32)
Veillonella denticariosi Firmicutes Rare neg S(4KB) R(5KB) S(10KB)
Veillonella dispar Firmicutes Moderate neg S(2/8), W(0.25–32) S(2/4), W(0.125-4) R(8-256) R(>256/>256), W(64–>256) R(>64/>64), W(64–>64) S(0.06/0.125), W(≤0.03->32) R(>32/>32), W(>32)
Veillonella infantium Firmicutes Rare neg S(4KB) R(30KB) S(10KB)
Veillonella magna Firmicutes Rare neg
Veillonella montpellierensis Firmicutes Rare neg S(2/4), W(0.125-4) R(5KB) S(0.06/0.125), W(≤0.03->32) R(10KB)
Veillonella nakazawae Firmicutes Rare neg S(4KB) R(30KB) S(10KB)
Veillonella parvula Firmicutes Widespread neg S(1/4), W(0.5-8) R S(0.5/4), W(0.25–4) S R R R R R R(8-256) R(>256/>256), W(64–>256) R(2048/>8,192), W(256–>8,192) S(0.06/0.125), W(≤0.03->32) S R(>32/>32), W(>32) S S
Veillonella ratti Firmicutes Rare neg S(2/4), W(0.125-4) R(5KB) S(0.06/0.125), W(≤0.03->32) R(10KB)
Veillonella rodentium Firmicutes Unlikely neg S
Veillonella rogosae Firmicutes Minor neg S(2/4), W(0.125-4) S(0.06/0.125), W(≤0.03->32)
Veillonella tobetsuensis Firmicutes Minor neg
Vescimonas coprocola Firmicutes Rare neg
Vescimonas fastidiosa Firmicutes Rare neg
Vibrio alginolyticus Proteobacteria Rare neg S R R
Vibrio cholerae Proteobacteria Unlikely neg S R R
Vibrio cincinnatiensis Proteobacteria Rare neg S(30KB) R S S(50U)
Vibrio fluvialis Proteobacteria Rare neg vr(30KB) vr(250KB) S(1.25KB) R(5KB) S(10KB) W(2-8) W(20-160)
Vibrio furnissii Proteobacteria Rare neg S(30KB) S(250KB) S(10KB) vr(50U)
Vibrio metoecus Proteobacteria Rare neg
Vibrio metschnikovii Proteobacteria Rare neg S R S
Vibrio mimicus Proteobacteria Rare neg S R vr
Vibrio natriegens Proteobacteria Rare neg
Vibrio neptunius Proteobacteria Unlikely neg S(30KB) S(300U)
Vibrio parahaemolyticus Proteobacteria Rare neg S R R
Vibrio proteolyticus Proteobacteria Rare neg
Vibrio rumoiensis Proteobacteria Unlikely neg S
Vibrio vulnificus Proteobacteria Rare neg R
Victivallis vadensis Lentisphaerae Minor neg R(20)
Virgibacillus dakarensis Firmicutes Rare +
Virgibacillus dokdonensis Firmicutes Rare vr
Virgibacillus doumboii Firmicutes Rare + R(>256) S(0.38) S(0.023)
Virgibacillus halodenitrificans Firmicutes Rare vr
Virgibacillus ihumii Firmicutes Rare +
Virgibacillus massiliensis Firmicutes Rare + R S R S
Virgibacillus ndiopensis Firmicutes Rare +
Virgibacillus pantothenticus Firmicutes Rare +
Virgibacillus profundi Firmicutes Unlikely vr S S R
Virgibacillus proomii Firmicutes Rare +
Virgibacillus salexigens Firmicutes Unlikely + S S R
Virgibacillus senegalensis Firmicutes Non + R S S S
Virgibacillus siamensis Firmicutes Unlikely +
Vitreoscilla massiliensis Proteobacteria Rare neg
Vitreoscilla stercoraria Proteobacteria Rare neg
Weeksella virosa Firmicutes Rare neg
Weissella cibaria Firmicutes Minor + R(>16/>16), W(0.5–>16) S(0.125/0.25), W(0.125–0.25)
Weissella confusa Firmicutes Minor + S(4/16), W(1–>32) R(>128/>128), W(0.5–>128) M(1/>64), W(0.06–>64) M(4/>32), W(0.25–>32) S(0.06/2), W(0.03–>128)
Weissella paramesenteroides Firmicutes Minor +
Weissella viridescens Firmicutes Minor +
Weizmannia coagulans Firmicutes Rare +
Winkia neuii Actinobacteria Rare + R(>16/>16), W(1–>16) S(0.5/1), W(0.25–1.0) S(0.06/0.25), W(0.03->32) M(2/32), W(0.03->32)
Wolinella succinogenes Proteobacteria Rare neg M(2-8) S(1-2) R(>128) S(1-2) S(2-4) S(1-8)
Xanthomonas massiliensis Proteobacteria Unlikely neg
Xylanimonas cellulosilytica Actinobacteria Rare +
Yangia pacifica Proteobacteria Non neg
Yersinia aldovae Proteobacteria Rare neg S R vr
Yersinia aleksiciae Proteobacteria Rare neg S R vr
Yersinia alsatica Proteobacteria Rare neg
Yersinia artesiana Proteobacteria Rare neg
Yersinia bercovieri Proteobacteria Rare neg S R vr
Yersinia enterocolitica subsp. enterocolitica Proteobacteria Unlikely neg R(16/128) R(16/16) S(≤0.5/≤0.5), W(≤0.5) R vr
Yersinia frederiksenii Proteobacteria Rare neg S R vr
Yersinia intermedia Proteobacteria Rare neg
Yersinia kristensenii subsp. kristensenii Proteobacteria Rare neg
Yersinia kristensenii subsp. rochesterensis Proteobacteria Rare neg
Yersinia massiliensis Proteobacteria Rare neg
Yersinia mollaretii Proteobacteria Rare neg S R vr
Yersinia occitanica Proteobacteria Rare neg
Yersinia pestis Proteobacteria Non neg S
Yersinia proxima Proteobacteria Rare neg
Yersinia pseudotuberculosis Proteobacteria Unlikely neg S R vr
Yersinia rohdei Proteobacteria Rare neg S(30KB) S(250KB,vr) S(25KB) R S(10KB)
Yersinia vastinensis Proteobacteria Rare neg
Yokenella regensburgei Proteobacteria Rare neg S S R
Yonghaparkia alkaliphila Actinobacteria Non + S(100KB) S(15KB) S(5KB) S(100U)
Zunongwangia profunda Bacteroidetes Non neg

Click on table headings to sort. Table abbreviations: chlp - chloramphenicol; fosf - fosfomycin; ison - isoniazid; metr - metronidazole; nitr - nitrofurantoin; ranb - ranbezolid; slfz - sulfadiazine; slfd - sulfadimethoxine; slfm - sulfamethoxazole; sulf - sulfanilamide; trim - trimethoprim; SXT1 - trimethoprim sulfamethoxazole; SXT2 - cotrimoxazole; dalb - dalbavancin; teic - teicoplanin; vanc - vancomycin; clin - clindamycin; linc - lincomycin; dapt - daptomycin; mone - monensin; novo - novobiocin; coli - colistin; polB - polymyxin B; fusi - fusidic acid; bile - bile salts; V129 - vibriostatin A 0-129;